RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy16911
         (194 letters)



>d1p32a_ d.25.1.1 (A:) Acidic mitochondrial matrix protein p32
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 209

 Score =  137 bits (346), Expect = 1e-41
 Identities = 71/203 (34%), Positives = 109/203 (53%), Gaps = 9/203 (4%)

Query: 1   EKELFEFLSEEIQAEKKIQKSKSIPSEIDGFQVKLDGPEVSLEKTVGSEKIEIHFNVNHS 60
           +K   +FLS+EI+ E+KIQK K++P    G++++L+G E  L + V  EKI + FN+N+S
Sbjct: 6   DKAFVDFLSDEIKEERKIQKHKTLPKMSGGWELELNGTEAKLVRKVAGEKITVTFNINNS 65

Query: 61  VDA----DAEPQIDPNMDEPEIEMKSKPSFEVNFIK---GNKTLGFTCSFIPPESEPSED 113
           +      + EP     ++E E E+ S P+F V  IK   G K L   C +   E    ++
Sbjct: 66  IPPTFDGEEEPSQGQKVEEQEPELTSTPNFVVEVIKNDDGKKALVLDCHYPEDEVGQEDE 125

Query: 114 GYNDLFSIDEVDTYERENGKT--TTIACLEEVLDGPLYDLLMNYLEEKGISNEFVDKLSN 171
             +D+FSI EV        +   T      + LD  LYD LM++L ++G+ N F D+L  
Sbjct: 126 AESDIFSIREVSFQSTGESEWKDTNYTLNTDSLDWALYDHLMDFLADRGVDNTFADELVE 185

Query: 172 LSTGYEHASYINLLSEIQKFTSQ 194
           LST  EH  YI  L +++ F   
Sbjct: 186 LSTALEHQEYITFLEDLKSFVKS 208


>d1yqfa1 d.25.1.1 (A:14-195) Hypothetical protein Lmaj011689
           {Leishmania major [TaxId: 5664]}
          Length = 182

 Score =  104 bits (262), Expect = 2e-29
 Identities = 33/195 (16%), Positives = 61/195 (31%), Gaps = 19/195 (9%)

Query: 2   KELFEFLSEEIQAEKKIQKSKSIPSEIDGFQVKLD--GPEVSLEKTVGSEKIEIHFNVNH 59
             L +    E++ E         P+   G+QV          L K+   E + + ++ N 
Sbjct: 4   AALADATRRELEEEMGRSDKPEQPTPPAGWQVVRKPGTCTFDLTKSFEGEDLVVRYSTNQ 63

Query: 60  SVDADAEPQIDPNMDEPEIEMKSKPSFEVNFIKGNKTLGFTCSFIPPE-SEPSEDGYNDL 118
             D      I   + +                   +T+    S    E    +   Y++ 
Sbjct: 64  DSDKANSHNIFVYITQK----------------NGQTMQADLSIEEGELVLNNIRFYDEA 107

Query: 119 FSIDEVDTYERENGKTTTIACLEEVLDGPLYDLLMNYLEEKGISNEFVDKLSNLSTGYEH 178
               +                L   LD  L + +M YLE++G+  +  + +   S   E 
Sbjct: 108 ALAKDTGAEAEAKRNELYTGPLVHELDYDLLNCVMTYLEKRGVDEKLGEFVVLYSFWAEQ 167

Query: 179 ASYINLLSEIQKFTS 193
             Y   L+ + KF S
Sbjct: 168 QDYEAWLTTMNKFAS 182


>d1wxia1 c.26.2.1 (A:2-275) NH3-dependent NAD+-synthetase
           {Escherichia coli [TaxId: 562]}
          Length = 274

 Score = 32.5 bits (73), Expect = 0.022
 Identities = 12/38 (31%), Positives = 18/38 (47%)

Query: 141 EEVLDGPLYDLLMNYLEEKGISNEFVDKLSNLSTGYEH 178
           +EV  G  YD + +YLE K +  +    + N     EH
Sbjct: 222 DEVALGVTYDNIDDYLEGKNVPQQVARTIENWYLKTEH 259


>d2c1wa1 d.294.1.1 (A:6-289) EndoU {African clawed frog (Xenopus
           laevis) [TaxId: 8355]}
          Length = 284

 Score = 28.7 bits (64), Expect = 0.35
 Identities = 17/81 (20%), Positives = 30/81 (37%), Gaps = 27/81 (33%)

Query: 125 DTYERENGKTTTI---------ACLEEVLDGPLYDLLMNYLEEKGIS----NEFVDKLSN 171
           D YE + G    +           L+ +L+  +  +  +YL  K  +    N+F  +L N
Sbjct: 77  DNYEMDTGVAEVVTPEEIAENNNFLDAILETKVMKMAHDYLVRKNQAKPTRNDFKVQLYN 136

Query: 172 L--------------STGYEH 178
           +              S G+EH
Sbjct: 137 IWFQLYSRAPGSRPDSCGFEH 157


>d2peqa1 a.280.1.1 (A:2-109) RuBisCo chaperone RbcX {Synechococcus
           sp. pcc 7002 [TaxId: 32049]}
          Length = 108

 Score = 25.5 bits (56), Expect = 2.3
 Identities = 4/37 (10%), Positives = 11/37 (29%), Gaps = 3/37 (8%)

Query: 135 TTIACLEEVLDGPLYDLLMNYLEEKGISN--EFVDKL 169
                L E  +      L  + +   I     +++ +
Sbjct: 24  LISQQLSET-NPGQAIWLGEFSKRHPIQESDLYLEAM 59


>d1kqpa_ c.26.2.1 (A:) NH3-dependent NAD+-synthetase {Bacillus
           subtilis [TaxId: 1423]}
          Length = 271

 Score = 26.0 bits (56), Expect = 2.7
 Identities = 11/33 (33%), Positives = 17/33 (51%)

Query: 146 GPLYDLLMNYLEEKGISNEFVDKLSNLSTGYEH 178
           G  YD + +YLE K +S +  + L    +  EH
Sbjct: 225 GISYDEIDDYLEGKEVSAKVSEALEKRYSMTEH 257


>d1r4xa1 b.1.10.3 (A:600-762) Coatomer gamma subunit C-terminal
           domain, first subdomain {Human (Homo sapiens) [TaxId:
           9606]}
          Length = 163

 Score = 25.1 bits (55), Expect = 4.0
 Identities = 7/31 (22%), Positives = 16/31 (51%), Gaps = 1/31 (3%)

Query: 96  TLGFT-CSFIPPESEPSEDGYNDLFSIDEVD 125
            + FT     P   E  ++GY D + +++++
Sbjct: 128 MMKFTVKDCDPTTGETDDEGYEDEYVLEDLE 158


>d2fe5a1 b.36.1.1 (A:223-314) Synapse-associated protein 102 {Human
           (Homo sapiens) [TaxId: 9606]}
          Length = 92

 Score = 24.5 bits (53), Expect = 4.6
 Identities = 9/15 (60%), Positives = 11/15 (73%)

Query: 86  FEVNFIKGNKTLGFT 100
            EVN +KG K LGF+
Sbjct: 3   MEVNLLKGPKGLGFS 17


>d2gc6a2 c.72.2.2 (A:1-296) Folylpolyglutamate synthetase
           {Lactobacillus casei [TaxId: 1582]}
          Length = 296

 Score = 24.7 bits (52), Expect = 9.9
 Identities = 5/14 (35%), Positives = 7/14 (50%)

Query: 131 NGKTTTIACLEEVL 144
           NGK +    +  VL
Sbjct: 48  NGKGSAANAIAHVL 61


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.309    0.132    0.362 

Gapped
Lambda     K      H
   0.267   0.0675    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 721,473
Number of extensions: 34016
Number of successful extensions: 111
Number of sequences better than 10.0: 1
Number of HSP's gapped: 106
Number of HSP's successfully gapped: 15
Length of query: 194
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 113
Effective length of database: 1,295,466
Effective search space: 146387658
Effective search space used: 146387658
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 50 (23.1 bits)