BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy16913
(81 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9IBD1|CELF3_DANRE CUGBP Elav-like family member 3 OS=Danio rerio GN=celf3 PE=2 SV=2
Length = 452
Score = 124 bits (311), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 62/81 (76%), Positives = 64/81 (79%), Gaps = 14/81 (17%)
Query: 1 MFLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGF 60
MFLPFGNVIS+KVF+DRATNQSKCFG FVSFDNPASA AIQAMNGF
Sbjct: 386 MFLPFGNVISAKVFVDRATNQSKCFG--------------FVSFDNPASAQAAIQAMNGF 431
Query: 61 QIGMKRLKVQLKRPKDAARPY 81
QIGMKRLKVQLKRPKDA RPY
Sbjct: 432 QIGMKRLKVQLKRPKDANRPY 452
>sp|Q91579|CEL3A_XENLA CUGBP Elav-like family member 3-A OS=Xenopus laevis GN=tnrc4-a PE=2
SV=2
Length = 462
Score = 122 bits (306), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 61/81 (75%), Positives = 63/81 (77%), Gaps = 14/81 (17%)
Query: 1 MFLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGF 60
MFLPFGNVIS+KVF+DRATNQSKCFG FVSFDNP SA AIQAMNGF
Sbjct: 396 MFLPFGNVISAKVFVDRATNQSKCFG--------------FVSFDNPGSAQAAIQAMNGF 441
Query: 61 QIGMKRLKVQLKRPKDAARPY 81
QIGMKRLKVQLKRPKDA RPY
Sbjct: 442 QIGMKRLKVQLKRPKDANRPY 462
>sp|A0JM51|CELF5_XENTR CUGBP Elav-like family member 5 OS=Xenopus tropicalis GN=celf5 PE=2
SV=1
Length = 486
Score = 122 bits (306), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 60/81 (74%), Positives = 64/81 (79%), Gaps = 14/81 (17%)
Query: 1 MFLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGF 60
MFLPFGN+ISSKVF+DRATNQSKCFG FVSFDNP+SA TAIQAMNGF
Sbjct: 420 MFLPFGNIISSKVFMDRATNQSKCFG--------------FVSFDNPSSAQTAIQAMNGF 465
Query: 61 QIGMKRLKVQLKRPKDAARPY 81
QIGMKRLKVQLKRPKD +PY
Sbjct: 466 QIGMKRLKVQLKRPKDTTQPY 486
>sp|Q6DGV1|CELF4_DANRE CUGBP Elav-like family member 4 OS=Danio rerio GN=celf4 PE=2 SV=1
Length = 520
Score = 121 bits (303), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 61/81 (75%), Positives = 63/81 (77%), Gaps = 14/81 (17%)
Query: 1 MFLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGF 60
MFLPFGNVISSKVF+DRATNQSKCFG FVSFDNP SA AIQ+MNGF
Sbjct: 454 MFLPFGNVISSKVFVDRATNQSKCFG--------------FVSFDNPGSAQAAIQSMNGF 499
Query: 61 QIGMKRLKVQLKRPKDAARPY 81
QIGMKRLKVQLKRPKDA RPY
Sbjct: 500 QIGMKRLKVQLKRPKDANRPY 520
>sp|Q8N6W0|CELF5_HUMAN CUGBP Elav-like family member 5 OS=Homo sapiens GN=CELF5 PE=1 SV=1
Length = 485
Score = 121 bits (303), Expect = 2e-27, Method: Composition-based stats.
Identities = 60/81 (74%), Positives = 62/81 (76%), Gaps = 14/81 (17%)
Query: 1 MFLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGF 60
MFLPFGN+ISSKVF+DRATNQSKCFG FVSFDNPASA AIQAMNGF
Sbjct: 419 MFLPFGNIISSKVFMDRATNQSKCFG--------------FVSFDNPASAQAAIQAMNGF 464
Query: 61 QIGMKRLKVQLKRPKDAARPY 81
QIGMKRLKVQLKRPKD PY
Sbjct: 465 QIGMKRLKVQLKRPKDPGHPY 485
>sp|Q7ZWM3|CEL3B_XENLA CUGBP Elav-like family member 3-B OS=Xenopus laevis GN=tnrc4-b PE=2
SV=1
Length = 462
Score = 120 bits (302), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 60/81 (74%), Positives = 63/81 (77%), Gaps = 14/81 (17%)
Query: 1 MFLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGF 60
MFLPFGNVIS+KVF+DRATNQSKCFG FVSFDNP SA AIQ+MNGF
Sbjct: 396 MFLPFGNVISAKVFVDRATNQSKCFG--------------FVSFDNPGSAQAAIQSMNGF 441
Query: 61 QIGMKRLKVQLKRPKDAARPY 81
QIGMKRLKVQLKRPKDA RPY
Sbjct: 442 QIGMKRLKVQLKRPKDANRPY 462
>sp|Q8CIN6|CELF3_MOUSE CUGBP Elav-like family member 3 OS=Mus musculus GN=Celf3 PE=2 SV=1
Length = 465
Score = 120 bits (302), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 60/81 (74%), Positives = 64/81 (79%), Gaps = 14/81 (17%)
Query: 1 MFLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGF 60
MF+PFG+VIS+KVF+DRATNQSKCFG FVSFDNPASA AIQAMNGF
Sbjct: 399 MFVPFGHVISAKVFVDRATNQSKCFG--------------FVSFDNPASAQAAIQAMNGF 444
Query: 61 QIGMKRLKVQLKRPKDAARPY 81
QIGMKRLKVQLKRPKDA RPY
Sbjct: 445 QIGMKRLKVQLKRPKDANRPY 465
>sp|Q5SZQ8|CELF3_HUMAN CUGBP Elav-like family member 3 OS=Homo sapiens GN=CELF3 PE=1 SV=1
Length = 465
Score = 120 bits (301), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 60/81 (74%), Positives = 64/81 (79%), Gaps = 14/81 (17%)
Query: 1 MFLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGF 60
MF+PFG+VIS+KVF+DRATNQSKCFG FVSFDNPASA AIQAMNGF
Sbjct: 399 MFVPFGHVISAKVFVDRATNQSKCFG--------------FVSFDNPASAQAAIQAMNGF 444
Query: 61 QIGMKRLKVQLKRPKDAARPY 81
QIGMKRLKVQLKRPKDA RPY
Sbjct: 445 QIGMKRLKVQLKRPKDANRPY 465
>sp|Q08E07|CELF3_BOVIN CUGBP Elav-like family member 3 OS=Bos taurus GN=CELF3 PE=2 SV=1
Length = 461
Score = 120 bits (301), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 60/81 (74%), Positives = 64/81 (79%), Gaps = 14/81 (17%)
Query: 1 MFLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGF 60
MF+PFG+VIS+KVF+DRATNQSKCFG FVSFDNPASA AIQAMNGF
Sbjct: 395 MFVPFGHVISAKVFVDRATNQSKCFG--------------FVSFDNPASAQAAIQAMNGF 440
Query: 61 QIGMKRLKVQLKRPKDAARPY 81
QIGMKRLKVQLKRPKDA RPY
Sbjct: 441 QIGMKRLKVQLKRPKDANRPY 461
>sp|Q7TN33|CELF6_MOUSE CUGBP Elav-like family member 6 OS=Mus musculus GN=Celf6 PE=2 SV=1
Length = 460
Score = 117 bits (294), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 59/80 (73%), Positives = 62/80 (77%), Gaps = 14/80 (17%)
Query: 2 FLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQ 61
FLPFG V+S+KVF+DRATNQSKCFG FVSFDNP SA TAIQAMNGFQ
Sbjct: 395 FLPFGAVVSAKVFVDRATNQSKCFG--------------FVSFDNPTSAQTAIQAMNGFQ 440
Query: 62 IGMKRLKVQLKRPKDAARPY 81
IGMKRLKVQLKRPKDA RPY
Sbjct: 441 IGMKRLKVQLKRPKDANRPY 460
>sp|Q96J87|CELF6_HUMAN CUGBP Elav-like family member 6 OS=Homo sapiens GN=CELF6 PE=1 SV=1
Length = 481
Score = 117 bits (294), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 59/80 (73%), Positives = 62/80 (77%), Gaps = 14/80 (17%)
Query: 2 FLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQ 61
FLPFG V+S+KVF+DRATNQSKCFG FVSFDNP SA TAIQAMNGFQ
Sbjct: 416 FLPFGAVVSAKVFVDRATNQSKCFG--------------FVSFDNPTSAQTAIQAMNGFQ 461
Query: 62 IGMKRLKVQLKRPKDAARPY 81
IGMKRLKVQLKRPKDA RPY
Sbjct: 462 IGMKRLKVQLKRPKDANRPY 481
>sp|A4IIM2|CELF2_XENTR CUGBP Elav-like family member 2 OS=Xenopus tropicalis GN=celf2 PE=2
SV=1
Length = 513
Score = 107 bits (268), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 53/81 (65%), Positives = 60/81 (74%), Gaps = 14/81 (17%)
Query: 1 MFLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGF 60
MF+PFGNVIS+KVFID+ TN SKCFG FVS+DNP SA AIQAMNGF
Sbjct: 447 MFMPFGNVISAKVFIDKQTNLSKCFG--------------FVSYDNPVSAQAAIQAMNGF 492
Query: 61 QIGMKRLKVQLKRPKDAARPY 81
QIGMKRLKVQLKR K+ ++PY
Sbjct: 493 QIGMKRLKVQLKRSKNDSKPY 513
>sp|Q792H5|CELF2_RAT CUGBP Elav-like family member 2 OS=Rattus norvegicus GN=Celf2 PE=2
SV=1
Length = 508
Score = 107 bits (267), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 53/81 (65%), Positives = 60/81 (74%), Gaps = 14/81 (17%)
Query: 1 MFLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGF 60
MF+PFGNVIS+KVFID+ TN SKCFG FVS+DNP SA AIQAMNGF
Sbjct: 442 MFMPFGNVISAKVFIDKQTNLSKCFG--------------FVSYDNPVSAQAAIQAMNGF 487
Query: 61 QIGMKRLKVQLKRPKDAARPY 81
QIGMKRLKVQLKR K+ ++PY
Sbjct: 488 QIGMKRLKVQLKRSKNDSKPY 508
>sp|Q9Z0H4|CELF2_MOUSE CUGBP Elav-like family member 2 OS=Mus musculus GN=Celf2 PE=1 SV=1
Length = 508
Score = 107 bits (267), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 53/81 (65%), Positives = 60/81 (74%), Gaps = 14/81 (17%)
Query: 1 MFLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGF 60
MF+PFGNVIS+KVFID+ TN SKCFG FVS+DNP SA AIQAMNGF
Sbjct: 442 MFMPFGNVISAKVFIDKQTNLSKCFG--------------FVSYDNPVSAQAAIQAMNGF 487
Query: 61 QIGMKRLKVQLKRPKDAARPY 81
QIGMKRLKVQLKR K+ ++PY
Sbjct: 488 QIGMKRLKVQLKRSKNDSKPY 508
>sp|Q7T2T1|CELF2_CHICK CUGBP Elav-like family member 2 OS=Gallus gallus GN=CELF2 PE=1 SV=2
Length = 484
Score = 107 bits (267), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 53/81 (65%), Positives = 60/81 (74%), Gaps = 14/81 (17%)
Query: 1 MFLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGF 60
MF+PFGNVIS+KVFID+ TN SKCFG FVS+DNP SA AIQAMNGF
Sbjct: 418 MFMPFGNVISAKVFIDKQTNLSKCFG--------------FVSYDNPVSAQAAIQAMNGF 463
Query: 61 QIGMKRLKVQLKRPKDAARPY 81
QIGMKRLKVQLKR K+ ++PY
Sbjct: 464 QIGMKRLKVQLKRSKNDSKPY 484
>sp|Q7ZXE2|CELF2_XENLA CUGBP Elav-like family member 2 OS=Xenopus laevis GN=celf2 PE=1
SV=1
Length = 536
Score = 107 bits (267), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 53/81 (65%), Positives = 60/81 (74%), Gaps = 14/81 (17%)
Query: 1 MFLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGF 60
MF+PFGNVIS+KVFID+ TN SKCFG FVS+DNP SA AIQAMNGF
Sbjct: 470 MFMPFGNVISAKVFIDKQTNLSKCFG--------------FVSYDNPVSAQAAIQAMNGF 515
Query: 61 QIGMKRLKVQLKRPKDAARPY 81
QIGMKRLKVQLKR K+ ++PY
Sbjct: 516 QIGMKRLKVQLKRSKNDSKPY 536
>sp|Q5R8Y8|CELF2_PONAB CUGBP Elav-like family member 2 OS=Pongo abelii GN=CELF2 PE=2 SV=2
Length = 508
Score = 107 bits (267), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 53/81 (65%), Positives = 60/81 (74%), Gaps = 14/81 (17%)
Query: 1 MFLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGF 60
MF+PFGNVIS+KVFID+ TN SKCFG FVS+DNP SA AIQAMNGF
Sbjct: 442 MFMPFGNVISAKVFIDKQTNLSKCFG--------------FVSYDNPVSAQAAIQAMNGF 487
Query: 61 QIGMKRLKVQLKRPKDAARPY 81
QIGMKRLKVQLKR K+ ++PY
Sbjct: 488 QIGMKRLKVQLKRSKNDSKPY 508
>sp|O95319|CELF2_HUMAN CUGBP Elav-like family member 2 OS=Homo sapiens GN=CELF2 PE=1 SV=1
Length = 508
Score = 107 bits (267), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 53/81 (65%), Positives = 60/81 (74%), Gaps = 14/81 (17%)
Query: 1 MFLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGF 60
MF+PFGNVIS+KVFID+ TN SKCFG FVS+DNP SA AIQAMNGF
Sbjct: 442 MFMPFGNVISAKVFIDKQTNLSKCFG--------------FVSYDNPVSAQAAIQAMNGF 487
Query: 61 QIGMKRLKVQLKRPKDAARPY 81
QIGMKRLKVQLKR K+ ++PY
Sbjct: 488 QIGMKRLKVQLKRSKNDSKPY 508
>sp|Q6P0B1|CELF2_DANRE CUGBP Elav-like family member 2 OS=Danio rerio GN=celf2 PE=2 SV=1
Length = 514
Score = 107 bits (267), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 52/81 (64%), Positives = 60/81 (74%), Gaps = 14/81 (17%)
Query: 1 MFLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGF 60
MF+PFGNV+S+KVFID+ TN SKCFG FVS+DNP SA AIQAMNGF
Sbjct: 448 MFMPFGNVVSAKVFIDKQTNLSKCFG--------------FVSYDNPVSAQAAIQAMNGF 493
Query: 61 QIGMKRLKVQLKRPKDAARPY 81
QIGMKRLKVQLKR K+ ++PY
Sbjct: 494 QIGMKRLKVQLKRSKNDSKPY 514
>sp|O57406|CEL1A_XENLA CUGBP Elav-like family member 1-A OS=Xenopus laevis GN=cugbp1-a
PE=1 SV=1
Length = 489
Score = 106 bits (265), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 52/81 (64%), Positives = 60/81 (74%), Gaps = 14/81 (17%)
Query: 1 MFLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGF 60
MF+PFGNV+SSKVFID+ TN SKCFG FVS+DNP SA AIQ+MNGF
Sbjct: 423 MFMPFGNVVSSKVFIDKQTNLSKCFG--------------FVSYDNPVSAQAAIQSMNGF 468
Query: 61 QIGMKRLKVQLKRPKDAARPY 81
QIGMKRLKVQLKR K+ ++PY
Sbjct: 469 QIGMKRLKVQLKRSKNDSKPY 489
>sp|Q28HE9|CELF1_XENTR CUGBP Elav-like family member 1 OS=Xenopus tropicalis GN=celf1 PE=2
SV=1
Length = 490
Score = 105 bits (262), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 51/81 (62%), Positives = 60/81 (74%), Gaps = 14/81 (17%)
Query: 1 MFLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGF 60
MF+PFGNV+S+KVFID+ TN SKCFG FVS+DNP SA AIQ+MNGF
Sbjct: 424 MFMPFGNVVSAKVFIDKQTNLSKCFG--------------FVSYDNPVSAQAAIQSMNGF 469
Query: 61 QIGMKRLKVQLKRPKDAARPY 81
QIGMKRLKVQLKR K+ ++PY
Sbjct: 470 QIGMKRLKVQLKRSKNDSKPY 490
>sp|P28659|CELF1_MOUSE CUGBP Elav-like family member 1 OS=Mus musculus GN=Celf1 PE=1 SV=2
Length = 486
Score = 105 bits (262), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 51/81 (62%), Positives = 60/81 (74%), Gaps = 14/81 (17%)
Query: 1 MFLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGF 60
MF+PFGNV+S+KVFID+ TN SKCFG FVS+DNP SA AIQ+MNGF
Sbjct: 420 MFMPFGNVVSAKVFIDKQTNLSKCFG--------------FVSYDNPVSAQAAIQSMNGF 465
Query: 61 QIGMKRLKVQLKRPKDAARPY 81
QIGMKRLKVQLKR K+ ++PY
Sbjct: 466 QIGMKRLKVQLKRSKNDSKPY 486
>sp|Q92879|CELF1_HUMAN CUGBP Elav-like family member 1 OS=Homo sapiens GN=CELF1 PE=1 SV=2
Length = 486
Score = 105 bits (262), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 51/81 (62%), Positives = 60/81 (74%), Gaps = 14/81 (17%)
Query: 1 MFLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGF 60
MF+PFGNV+S+KVFID+ TN SKCFG FVS+DNP SA AIQ+MNGF
Sbjct: 420 MFMPFGNVVSAKVFIDKQTNLSKCFG--------------FVSYDNPVSAQAAIQSMNGF 465
Query: 61 QIGMKRLKVQLKRPKDAARPY 81
QIGMKRLKVQLKR K+ ++PY
Sbjct: 466 QIGMKRLKVQLKRSKNDSKPY 486
>sp|Q4QQT3|CELF1_RAT CUGBP Elav-like family member 1 OS=Rattus norvegicus GN=Celf1 PE=2
SV=1
Length = 487
Score = 105 bits (262), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 51/81 (62%), Positives = 60/81 (74%), Gaps = 14/81 (17%)
Query: 1 MFLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGF 60
MF+PFGNV+S+KVFID+ TN SKCFG FVS+DNP SA AIQ+MNGF
Sbjct: 421 MFMPFGNVVSAKVFIDKQTNLSKCFG--------------FVSYDNPVSAQAAIQSMNGF 466
Query: 61 QIGMKRLKVQLKRPKDAARPY 81
QIGMKRLKVQLKR K+ ++PY
Sbjct: 467 QIGMKRLKVQLKRSKNDSKPY 487
>sp|Q5R995|CELF1_PONAB CUGBP Elav-like family member 1 OS=Pongo abelii GN=CELF1 PE=2 SV=1
Length = 513
Score = 105 bits (262), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 51/81 (62%), Positives = 60/81 (74%), Gaps = 14/81 (17%)
Query: 1 MFLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGF 60
MF+PFGNV+S+KVFID+ TN SKCFG FVS+DNP SA AIQ+MNGF
Sbjct: 447 MFMPFGNVVSAKVFIDKQTNLSKCFG--------------FVSYDNPVSAQAAIQSMNGF 492
Query: 61 QIGMKRLKVQLKRPKDAARPY 81
QIGMKRLKVQLKR K+ ++PY
Sbjct: 493 QIGMKRLKVQLKRSKNDSKPY 513
>sp|Q5F3T7|CELF1_CHICK CUGBP Elav-like family member 1 OS=Gallus gallus GN=CELF1 PE=1 SV=2
Length = 489
Score = 105 bits (261), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 51/81 (62%), Positives = 60/81 (74%), Gaps = 14/81 (17%)
Query: 1 MFLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGF 60
MF+PFGNV+S+KVFID+ TN SKCFG FVS+DNP SA AIQ+MNGF
Sbjct: 423 MFMPFGNVVSAKVFIDKQTNLSKCFG--------------FVSYDNPVSAQAAIQSMNGF 468
Query: 61 QIGMKRLKVQLKRPKDAARPY 81
QIGMKRLKVQLKR K+ ++PY
Sbjct: 469 QIGMKRLKVQLKRSKNDSKPY 489
>sp|Q9IBD0|CELF1_DANRE CUGBP Elav-like family member 1 OS=Danio rerio GN=celf1 PE=1 SV=1
Length = 501
Score = 104 bits (260), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 51/81 (62%), Positives = 60/81 (74%), Gaps = 14/81 (17%)
Query: 1 MFLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGF 60
MF+PFGNVIS+KVFID+ TN SKCFG FVS+DNP S+ AIQ+MNGF
Sbjct: 435 MFMPFGNVISAKVFIDKQTNLSKCFG--------------FVSYDNPVSSQAAIQSMNGF 480
Query: 61 QIGMKRLKVQLKRPKDAARPY 81
QIGMKRLKVQLKR K+ ++PY
Sbjct: 481 QIGMKRLKVQLKRSKNDSKPY 501
>sp|Q6PF35|CEL1B_XENLA CUGBP Elav-like family member 1-B OS=Xenopus laevis GN=cugbp1-b
PE=2 SV=1
Length = 489
Score = 104 bits (260), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 49/81 (60%), Positives = 60/81 (74%), Gaps = 14/81 (17%)
Query: 1 MFLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGF 60
MF+PFGN++S+KVFID+ TN SKCFG F+S+DNP SA AIQ+MNGF
Sbjct: 423 MFMPFGNIVSAKVFIDKQTNLSKCFG--------------FISYDNPVSAQAAIQSMNGF 468
Query: 61 QIGMKRLKVQLKRPKDAARPY 81
QIGMKRLKVQLKR K+ ++PY
Sbjct: 469 QIGMKRLKVQLKRSKNDSKPY 489
>sp|Q7TSY6|CELF4_MOUSE CUGBP Elav-like family member 4 OS=Mus musculus GN=Celf4 PE=1 SV=2
Length = 486
Score = 87.4 bits (215), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 41/43 (95%), Positives = 41/43 (95%)
Query: 39 FGFVSFDNPASAHTAIQAMNGFQIGMKRLKVQLKRPKDAARPY 81
FGFVSFDNPASA TAIQAMNGFQIGMKRLKVQLKRPKDA RPY
Sbjct: 444 FGFVSFDNPASAQTAIQAMNGFQIGMKRLKVQLKRPKDANRPY 486
>sp|Q4R535|CELF4_MACFA CUGBP Elav-like family member 4 OS=Macaca fascicularis GN=CELF4
PE=2 SV=1
Length = 474
Score = 87.4 bits (215), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 41/43 (95%), Positives = 41/43 (95%)
Query: 39 FGFVSFDNPASAHTAIQAMNGFQIGMKRLKVQLKRPKDAARPY 81
FGFVSFDNPASA TAIQAMNGFQIGMKRLKVQLKRPKDA RPY
Sbjct: 432 FGFVSFDNPASAQTAIQAMNGFQIGMKRLKVQLKRPKDANRPY 474
>sp|Q5NVC8|CELF4_PONAB CUGBP Elav-like family member 4 OS=Pongo abelii GN=CELF4 PE=2 SV=2
Length = 486
Score = 87.4 bits (215), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 41/43 (95%), Positives = 41/43 (95%)
Query: 39 FGFVSFDNPASAHTAIQAMNGFQIGMKRLKVQLKRPKDAARPY 81
FGFVSFDNPASA TAIQAMNGFQIGMKRLKVQLKRPKDA RPY
Sbjct: 444 FGFVSFDNPASAQTAIQAMNGFQIGMKRLKVQLKRPKDANRPY 486
>sp|Q9BZC1|CELF4_HUMAN CUGBP Elav-like family member 4 OS=Homo sapiens GN=CELF4 PE=1 SV=1
Length = 486
Score = 87.4 bits (215), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 41/43 (95%), Positives = 41/43 (95%)
Query: 39 FGFVSFDNPASAHTAIQAMNGFQIGMKRLKVQLKRPKDAARPY 81
FGFVSFDNPASA TAIQAMNGFQIGMKRLKVQLKRPKDA RPY
Sbjct: 444 FGFVSFDNPASAQTAIQAMNGFQIGMKRLKVQLKRPKDANRPY 486
>sp|Q0V9L3|CELF4_XENTR CUGBP Elav-like family member 4 OS=Xenopus tropicalis GN=celf4 PE=2
SV=1
Length = 424
Score = 85.5 bits (210), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 40/43 (93%), Positives = 40/43 (93%)
Query: 39 FGFVSFDNPASAHTAIQAMNGFQIGMKRLKVQLKRPKDAARPY 81
FGFVSFDNPASA AIQAMNGFQIGMKRLKVQLKRPKDA RPY
Sbjct: 382 FGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQLKRPKDANRPY 424
>sp|Q91W59|RBMS1_MOUSE RNA-binding motif, single-stranded-interacting protein 1 OS=Mus
musculus GN=Rbms1 PE=2 SV=1
Length = 403
Score = 46.2 bits (108), Expect = 5e-05, Method: Composition-based stats.
Identities = 26/69 (37%), Positives = 39/69 (56%), Gaps = 16/69 (23%)
Query: 4 PFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAM--NGFQ 61
P+G ++S+K +D+ATN KC G +GFV FD+PA+A A+ A+ NG Q
Sbjct: 84 PYGKIVSTKAILDKATN--KCKG------------YGFVDFDSPAAAQKAVSALKANGVQ 129
Query: 62 IGMKRLKVQ 70
M + + Q
Sbjct: 130 AQMAKQQEQ 138
>sp|Q5PQP1|RBMS1_RAT RNA-binding motif, single-stranded-interacting protein 1 OS=Rattus
norvegicus GN=Rbms1 PE=2 SV=1
Length = 403
Score = 45.4 bits (106), Expect = 1e-04, Method: Composition-based stats.
Identities = 24/73 (32%), Positives = 39/73 (53%), Gaps = 14/73 (19%)
Query: 4 PFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQIG 63
P+G ++S+K +D+ATN KC G +GFV FD+PA+A A+ A+ +
Sbjct: 84 PYGKIVSTKAILDKATN--KCKG------------YGFVDFDSPAAAQKAVSALKASGVQ 129
Query: 64 MKRLKVQLKRPKD 76
+ K Q + P +
Sbjct: 130 AQMAKQQEQDPTN 142
>sp|Q1JQ73|ELV1A_XENLA ELAV-like protein 1-A OS=Xenopus laevis GN=elavl1-a PE=1 SV=1
Length = 337
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 38/75 (50%), Gaps = 14/75 (18%)
Query: 1 MFLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGF 60
MF PFG V + KV D TN KC K FGFV+ N A AI ++NG+
Sbjct: 274 MFGPFGAVTNVKVIRDFNTN--KC------------KGFGFVTMTNYEEAAMAIASLNGY 319
Query: 61 QIGMKRLKVQLKRPK 75
++G K L+V K K
Sbjct: 320 RLGDKTLQVSFKTSK 334
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 32/61 (52%), Gaps = 14/61 (22%)
Query: 1 MFLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGF 60
MFLPFG++I+S+V +D+AT S + F+ FD + A AI + NG
Sbjct: 136 MFLPFGHIINSRVLVDQATGLS--------------RGVAFIRFDKRSEAEEAIASFNGH 181
Query: 61 Q 61
+
Sbjct: 182 K 182
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 35/74 (47%), Gaps = 3/74 (4%)
Query: 1 MFLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGF 60
+F G V S+K+ D+ ++ S+ +GFV++ N A AI +NG
Sbjct: 39 LFSSIGEVESAKLIRDKVAGFEMRSSSLSKGHSLG---YGFVNYLNAKDAERAINTLNGL 95
Query: 61 QIGMKRLKVQLKRP 74
++ K +KV RP
Sbjct: 96 RLQSKTIKVSFARP 109
>sp|P13824|ARP2_PLAFA Clustered-asparagine-rich protein OS=Plasmodium falciparum PE=4
SV=2
Length = 443
Score = 44.7 bits (104), Expect = 2e-04, Method: Composition-based stats.
Identities = 22/35 (62%), Positives = 26/35 (74%)
Query: 39 FGFVSFDNPASAHTAIQAMNGFQIGMKRLKVQLKR 73
FGFVS+DN SA AIQ MNG+ + K LKVQLK+
Sbjct: 400 FGFVSYDNVISAQHAIQFMNGYFVNNKYLKVQLKK 434
>sp|Q5U259|ELV1B_XENLA ELAV-like protein 1-B OS=Xenopus laevis GN=elavl1-b PE=1 SV=1
Length = 326
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 38/75 (50%), Gaps = 14/75 (18%)
Query: 1 MFLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGF 60
MF PFG V + KV D TN KC K FGFV+ N A AI ++NG+
Sbjct: 263 MFGPFGAVTNVKVIRDFNTN--KC------------KGFGFVTMTNYEEAAMAIASLNGY 308
Query: 61 QIGMKRLKVQLKRPK 75
++G K L+V K K
Sbjct: 309 RLGDKTLQVSFKTSK 323
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 32/61 (52%), Gaps = 14/61 (22%)
Query: 1 MFLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGF 60
MFLPFG++I+S+V +D+AT S + F+ FD + A AI + NG
Sbjct: 125 MFLPFGHIINSRVLVDQATGLS--------------RGVAFIRFDKRSEAEEAIASFNGH 170
Query: 61 Q 61
+
Sbjct: 171 K 171
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 34/74 (45%), Gaps = 14/74 (18%)
Query: 1 MFLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGF 60
+F G V S+K+ D KV+ + +GFV++ N A AI +NG
Sbjct: 39 LFSSIGEVESAKLIRD--------------KVAGHSLGYGFVNYLNAKDAERAINTLNGL 84
Query: 61 QIGMKRLKVQLKRP 74
++ K +KV RP
Sbjct: 85 RLQSKTIKVSFARP 98
>sp|Q8VC70|RBMS2_MOUSE RNA-binding motif, single-stranded-interacting protein 2 OS=Mus
musculus GN=Rbms2 PE=2 SV=1
Length = 383
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 38/73 (52%), Gaps = 14/73 (19%)
Query: 4 PFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQIG 63
P+G ++S+K +D+ TN KC K +GFV FD+P+SA A+ A+ +
Sbjct: 80 PYGKIVSTKAILDKTTN--KC------------KGYGFVDFDSPSSAQKAVTALKASGVQ 125
Query: 64 MKRLKVQLKRPKD 76
+ K Q + P +
Sbjct: 126 AQMAKQQEQDPTN 138
>sp|P29558|RBMS1_HUMAN RNA-binding motif, single-stranded-interacting protein 1 OS=Homo
sapiens GN=RBMS1 PE=1 SV=3
Length = 406
Score = 43.9 bits (102), Expect = 3e-04, Method: Composition-based stats.
Identities = 23/73 (31%), Positives = 38/73 (52%), Gaps = 14/73 (19%)
Query: 4 PFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQIG 63
P+G ++S+K +D+ TN KC G +GFV FD+PA+A A+ A+ +
Sbjct: 84 PYGKIVSTKAILDKTTN--KCKG------------YGFVDFDSPAAAQKAVSALKASGVQ 129
Query: 64 MKRLKVQLKRPKD 76
+ K Q + P +
Sbjct: 130 AQMAKQQEQDPTN 142
>sp|Q3ZBP3|RBMS1_BOVIN RNA-binding motif, single-stranded-interacting protein 1 OS=Bos
taurus GN=RBMS1 PE=2 SV=1
Length = 403
Score = 43.9 bits (102), Expect = 3e-04, Method: Composition-based stats.
Identities = 23/73 (31%), Positives = 38/73 (52%), Gaps = 14/73 (19%)
Query: 4 PFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQIG 63
P+G ++S+K +D+ TN KC G +GFV FD+PA+A A+ A+ +
Sbjct: 84 PYGKIVSTKAILDKTTN--KCKG------------YGFVDFDSPAAAQKAVSALKASGVQ 129
Query: 64 MKRLKVQLKRPKD 76
+ K Q + P +
Sbjct: 130 AQMAKQQEQDPTN 142
>sp|P70372|ELAV1_MOUSE ELAV-like protein 1 OS=Mus musculus GN=Elavl1 PE=1 SV=2
Length = 326
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 38/75 (50%), Gaps = 14/75 (18%)
Query: 1 MFLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGF 60
MF PFG V + KV D TN KC K FGFV+ N A AI ++NG+
Sbjct: 263 MFGPFGAVTNVKVIRDFNTN--KC------------KGFGFVTMTNYEEAAMAIASLNGY 308
Query: 61 QIGMKRLKVQLKRPK 75
++G K L+V K K
Sbjct: 309 RLGDKILQVSFKTNK 323
Score = 32.7 bits (73), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 33/74 (44%), Gaps = 14/74 (18%)
Query: 1 MFLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGF 60
+F G V S+K+ D KV+ + +GFV++ A AI +NG
Sbjct: 39 LFSSIGEVESAKLIRD--------------KVAGHSLGYGFVNYVTAKDAERAISTLNGL 84
Query: 61 QIGMKRLKVQLKRP 74
++ K +KV RP
Sbjct: 85 RLQSKTIKVSYARP 98
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 14/61 (22%)
Query: 1 MFLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGF 60
MF FG +I+S+V +D+ T S+ F+ FD + A AI + NG
Sbjct: 125 MFSRFGRIINSRVLVDQTTGLSRGVA--------------FIRFDKRSEAEEAITSFNGH 170
Query: 61 Q 61
+
Sbjct: 171 K 171
>sp|Q15717|ELAV1_HUMAN ELAV-like protein 1 OS=Homo sapiens GN=ELAVL1 PE=1 SV=2
Length = 326
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 38/75 (50%), Gaps = 14/75 (18%)
Query: 1 MFLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGF 60
MF PFG V + KV D TN KC K FGFV+ N A AI ++NG+
Sbjct: 263 MFGPFGAVTNVKVIRDFNTN--KC------------KGFGFVTMTNYEEAAMAIASLNGY 308
Query: 61 QIGMKRLKVQLKRPK 75
++G K L+V K K
Sbjct: 309 RLGDKILQVSFKTNK 323
Score = 32.7 bits (73), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 33/74 (44%), Gaps = 14/74 (18%)
Query: 1 MFLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGF 60
+F G V S+K+ D KV+ + +GFV++ A AI +NG
Sbjct: 39 LFSSIGEVESAKLIRD--------------KVAGHSLGYGFVNYVTAKDAERAINTLNGL 84
Query: 61 QIGMKRLKVQLKRP 74
++ K +KV RP
Sbjct: 85 RLQSKTIKVSYARP 98
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 14/61 (22%)
Query: 1 MFLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGF 60
MF FG +I+S+V +D+ T S+ F+ FD + A AI + NG
Sbjct: 125 MFSRFGRIINSRVLVDQTTGLSRGVA--------------FIRFDKRSEAEEAITSFNGH 170
Query: 61 Q 61
+
Sbjct: 171 K 171
>sp|P23241|ELAV_DROVI Protein elav OS=Drosophila virilis GN=elav PE=3 SV=1
Length = 519
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 38/75 (50%), Gaps = 14/75 (18%)
Query: 1 MFLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGF 60
+F PFG V S K+ D TNQ C K +GFVS N A AI+A+NG+
Sbjct: 457 LFGPFGAVQSVKIVKDPTTNQ------C--------KGYGFVSMTNYDEAAMAIRALNGY 502
Query: 61 QIGMKRLKVQLKRPK 75
+G + L+V K K
Sbjct: 503 TMGNRVLQVSFKTNK 517
Score = 35.8 bits (81), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 8/68 (11%)
Query: 11 SKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQIGMKRLKVQ 70
S+V+ID Q+ G+ +GFV++ P A A+ +NG ++ K +KV
Sbjct: 221 SQVYIDPLNPQAPSKGQS--------LGYGFVNYVRPQDAEQAVNVLNGLRLQNKTIKVS 272
Query: 71 LKRPKDAA 78
RP A
Sbjct: 273 FARPSSDA 280
Score = 30.4 bits (67), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 13/59 (22%)
Query: 1 MFLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNG 59
+F PFG +I+S++ + A N ++ K GF+ FD A AI A+NG
Sbjct: 303 IFAPFGAIITSRI-LQNAGNDTQT------------KGVGFIRFDKREEATRAIIALNG 348
>sp|P16914|ELAV_DROME Protein elav OS=Drosophila melanogaster GN=elav PE=2 SV=1
Length = 483
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 38/75 (50%), Gaps = 14/75 (18%)
Query: 1 MFLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGF 60
+F PFG V S K+ D TNQ C K +GFVS N A AI+A+NG+
Sbjct: 421 LFGPFGAVQSVKIVKDPTTNQ------C--------KGYGFVSMTNYDEAAMAIRALNGY 466
Query: 61 QIGMKRLKVQLKRPK 75
+G + L+V K K
Sbjct: 467 TMGNRVLQVSFKTNK 481
Score = 36.2 bits (82), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 8/68 (11%)
Query: 11 SKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQIGMKRLKVQ 70
S+V+ID Q+ G+ +GFV++ P A A+ +NG ++ K +KV
Sbjct: 185 SQVYIDPLNPQAPSKGQS--------LGYGFVNYVRPQDAEQAVNVLNGLRLQNKTIKVS 236
Query: 71 LKRPKDAA 78
RP A
Sbjct: 237 FARPSSDA 244
Score = 30.4 bits (67), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 13/59 (22%)
Query: 1 MFLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNG 59
+F PFG +I+S++ + A N ++ K GF+ FD A AI A+NG
Sbjct: 267 IFAPFGAIITSRI-LQNAGNDTQT------------KGVGFIRFDKREEATRAIIALNG 312
>sp|Q8BWL5|RBMS3_MOUSE RNA-binding motif, single-stranded-interacting protein 3 OS=Mus
musculus GN=Rbms3 PE=2 SV=2
Length = 431
Score = 43.1 bits (100), Expect = 4e-04, Method: Composition-based stats.
Identities = 23/69 (33%), Positives = 37/69 (53%), Gaps = 16/69 (23%)
Query: 4 PFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAM--NGFQ 61
P+G ++S+K +D+ TNQ K +GFV FD+PA+A A+ ++ NG Q
Sbjct: 78 PYGKIVSTKAILDKNTNQC--------------KGYGFVDFDSPAAAQKAVASLKANGVQ 123
Query: 62 IGMKRLKVQ 70
M + + Q
Sbjct: 124 AQMAKQQEQ 132
>sp|Q6GLB5|ELAV1_XENTR ELAV-like protein 1 OS=Xenopus tropicalis GN=elavl1 PE=2 SV=1
Length = 326
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 38/75 (50%), Gaps = 14/75 (18%)
Query: 1 MFLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGF 60
MF PFG V + KV D TN KC K FGFV+ N A AI ++NG+
Sbjct: 263 MFGPFGAVTNVKVIRDFNTN--KC------------KGFGFVTMTNYEEAAMAIASLNGY 308
Query: 61 QIGMKRLKVQLKRPK 75
++G K L+V K K
Sbjct: 309 RLGDKTLQVFFKTSK 323
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 31/61 (50%), Gaps = 14/61 (22%)
Query: 1 MFLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGF 60
MFLPFG +I+S+V +D+AT S + F+ FD + A AI + NG
Sbjct: 125 MFLPFGRIINSRVLVDQATGLS--------------RGVAFIRFDKRSEAEEAIASFNGH 170
Query: 61 Q 61
+
Sbjct: 171 K 171
Score = 35.4 bits (80), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 35/74 (47%), Gaps = 14/74 (18%)
Query: 1 MFLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGF 60
+F G V S+K+ D KV+ + +GFV++ N A AI +NG
Sbjct: 39 LFSSIGEVESAKLIRD--------------KVAGHSLGYGFVNYLNAKDAERAINTLNGL 84
Query: 61 QIGMKRLKVQLKRP 74
++ K +KV + RP
Sbjct: 85 RLQSKTIKVSVARP 98
>sp|A5DW14|PABP_LODEL Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Lodderomyces elongisporus (strain ATCC 11503 / CBS
2605 / JCM 1781 / NBRC 1676 / NRRL YB-4239) GN=PAB1 PE=3
SV=1
Length = 661
Score = 43.1 bits (100), Expect = 5e-04, Method: Composition-based stats.
Identities = 29/78 (37%), Positives = 33/78 (42%), Gaps = 15/78 (19%)
Query: 2 FLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQ 61
F PFG + SSKV +D A K FGFV F P A AI MN
Sbjct: 371 FKPFGTITSSKVMVDDAGKS---------------KGFGFVCFSTPEEATKAITEMNQRM 415
Query: 62 IGMKRLKVQLKRPKDAAR 79
+ K L V L + KD R
Sbjct: 416 VNGKPLYVALAQRKDVRR 433
Score = 31.6 bits (70), Expect = 1.4, Method: Composition-based stats.
Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 15/68 (22%)
Query: 2 FLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQ 61
F FG ++S KV D G+ KCFGFV ++ +A AI+++NG
Sbjct: 175 FSAFGKILSVKVATDD-------LGQ--------SKCFGFVHYETEEAAQAAIESVNGML 219
Query: 62 IGMKRLKV 69
+ + + V
Sbjct: 220 LNDREVYV 227
>sp|Q5RBD3|RBMS3_PONAB RNA-binding motif, single-stranded-interacting protein 3 OS=Pongo
abelii GN=RBMS3 PE=2 SV=1
Length = 436
Score = 43.1 bits (100), Expect = 5e-04, Method: Composition-based stats.
Identities = 23/69 (33%), Positives = 37/69 (53%), Gaps = 16/69 (23%)
Query: 4 PFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAM--NGFQ 61
P+G ++S+K +D+ TNQ K +GFV FD+PA+A A+ ++ NG Q
Sbjct: 82 PYGKIVSTKAILDKNTNQC--------------KGYGFVDFDSPAAAQKAVASLKANGVQ 127
Query: 62 IGMKRLKVQ 70
M + + Q
Sbjct: 128 AQMAKQQEQ 136
>sp|Q6XE24|RBMS3_HUMAN RNA-binding motif, single-stranded-interacting protein 3 OS=Homo
sapiens GN=RBMS3 PE=1 SV=1
Length = 437
Score = 43.1 bits (100), Expect = 5e-04, Method: Composition-based stats.
Identities = 23/69 (33%), Positives = 37/69 (53%), Gaps = 16/69 (23%)
Query: 4 PFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAM--NGFQ 61
P+G ++S+K +D+ TNQ K +GFV FD+PA+A A+ ++ NG Q
Sbjct: 83 PYGKIVSTKAILDKNTNQC--------------KGYGFVDFDSPAAAQKAVASLKANGVQ 128
Query: 62 IGMKRLKVQ 70
M + + Q
Sbjct: 129 AQMAKQQEQ 137
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.325 0.136 0.412
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 26,849,698
Number of Sequences: 539616
Number of extensions: 799212
Number of successful extensions: 2620
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 237
Number of HSP's successfully gapped in prelim test: 59
Number of HSP's that attempted gapping in prelim test: 1995
Number of HSP's gapped (non-prelim): 540
length of query: 81
length of database: 191,569,459
effective HSP length: 52
effective length of query: 29
effective length of database: 163,509,427
effective search space: 4741773383
effective search space used: 4741773383
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (25.8 bits)