Query psy16913
Match_columns 81
No_of_seqs 214 out of 1042
Neff 8.2
Searched_HMMs 46136
Date Fri Aug 16 16:53:17 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16913.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/16913hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03134 glycine-rich RNA-bind 99.7 7.1E-17 1.5E-21 99.5 8.5 63 1-77 54-116 (144)
2 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.7 5.7E-17 1.2E-21 110.3 8.0 64 1-78 289-352 (352)
3 PF13893 RRM_5: RNA recognitio 99.6 2.6E-15 5.6E-20 78.7 7.2 53 1-72 4-56 (56)
4 KOG0146|consensus 99.6 2.1E-16 4.5E-21 105.6 3.0 67 1-81 305-371 (371)
5 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.6 1.6E-15 3.5E-20 103.1 7.4 63 1-77 23-85 (352)
6 KOG0122|consensus 99.6 3.3E-15 7.1E-20 98.2 6.7 62 1-76 209-270 (270)
7 KOG0148|consensus 99.6 4E-15 8.6E-20 99.2 5.8 61 2-76 83-143 (321)
8 KOG4207|consensus 99.6 1.7E-15 3.7E-20 97.9 2.8 60 1-74 33-92 (256)
9 KOG0125|consensus 99.6 6.1E-15 1.3E-19 100.3 5.3 59 1-75 116-174 (376)
10 smart00361 RRM_1 RNA recogniti 99.5 2.7E-14 6E-19 78.1 6.7 52 4-69 15-69 (70)
11 KOG0145|consensus 99.5 1.2E-14 2.6E-19 97.0 5.9 63 1-77 61-123 (360)
12 TIGR01659 sex-lethal sex-letha 99.5 1.6E-14 3.5E-19 99.7 6.3 61 1-75 127-187 (346)
13 TIGR01645 half-pint poly-U bin 99.5 1.4E-13 2.9E-18 100.5 8.1 62 1-76 224-285 (612)
14 PF00076 RRM_1: RNA recognitio 99.5 2E-13 4.3E-18 73.2 6.1 53 1-68 18-70 (70)
15 TIGR01645 half-pint poly-U bin 99.5 1.3E-13 2.9E-18 100.6 6.9 60 1-74 127-186 (612)
16 KOG0126|consensus 99.5 3.1E-14 6.7E-19 90.6 3.0 58 1-72 55-112 (219)
17 KOG0111|consensus 99.5 4.3E-14 9.3E-19 92.4 3.5 62 2-77 31-92 (298)
18 TIGR01659 sex-lethal sex-letha 99.5 3.2E-13 6.8E-18 93.3 7.6 63 1-77 213-277 (346)
19 TIGR01628 PABP-1234 polyadenyl 99.4 1.8E-13 4E-18 98.5 6.1 62 1-77 305-366 (562)
20 KOG0149|consensus 99.4 1E-13 2.2E-18 90.8 4.0 57 2-73 33-89 (247)
21 TIGR01628 PABP-1234 polyadenyl 99.4 7E-13 1.5E-17 95.5 7.2 60 1-74 20-79 (562)
22 KOG0113|consensus 99.4 7.9E-13 1.7E-17 89.1 6.9 61 2-76 122-182 (335)
23 smart00360 RRM RNA recognition 99.4 1.5E-12 3.3E-17 68.6 6.2 56 1-70 16-71 (71)
24 TIGR01622 SF-CC1 splicing fact 99.4 2E-12 4.2E-17 90.9 7.9 60 1-74 206-265 (457)
25 TIGR01642 U2AF_lg U2 snRNP aux 99.4 2.9E-12 6.3E-17 91.0 7.8 61 1-75 315-375 (509)
26 KOG0131|consensus 99.4 6.6E-13 1.4E-17 84.4 3.5 59 1-73 29-87 (203)
27 KOG0130|consensus 99.3 8.7E-13 1.9E-17 80.7 3.8 62 1-76 92-153 (170)
28 PF14259 RRM_6: RNA recognitio 99.3 7.8E-12 1.7E-16 67.6 7.0 53 1-68 18-70 (70)
29 KOG0117|consensus 99.3 2.9E-12 6.3E-17 90.1 6.4 60 1-74 103-163 (506)
30 KOG0145|consensus 99.3 6.6E-12 1.4E-16 84.0 7.4 61 1-75 298-358 (360)
31 KOG0121|consensus 99.3 1.7E-12 3.7E-17 78.7 4.2 60 1-74 56-115 (153)
32 KOG0108|consensus 99.3 2.8E-12 6E-17 90.7 4.9 63 1-77 38-100 (435)
33 KOG0124|consensus 99.3 2.4E-12 5.1E-17 89.3 4.4 59 2-74 134-192 (544)
34 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.3 1.1E-11 2.3E-16 88.5 7.5 56 1-75 296-351 (481)
35 smart00362 RRM_2 RNA recogniti 99.3 1.7E-11 3.8E-16 64.7 6.2 54 1-70 19-72 (72)
36 TIGR01622 SF-CC1 splicing fact 99.3 1.1E-11 2.3E-16 87.2 6.9 59 1-74 109-167 (457)
37 KOG0107|consensus 99.3 5.4E-12 1.2E-16 79.8 4.8 57 1-76 30-86 (195)
38 KOG0127|consensus 99.3 8.4E-12 1.8E-16 89.7 5.9 62 1-77 137-198 (678)
39 PLN03120 nucleic acid binding 99.3 1.8E-11 3.9E-16 81.6 6.5 56 1-74 24-79 (260)
40 PLN03213 repressor of silencin 99.3 1.1E-11 2.3E-16 88.7 5.8 57 1-75 30-88 (759)
41 KOG4208|consensus 99.3 1.6E-11 3.5E-16 79.2 6.0 60 2-75 70-130 (214)
42 COG0724 RNA-binding proteins ( 99.3 2.1E-11 4.4E-16 77.9 6.4 59 1-73 135-193 (306)
43 TIGR01648 hnRNP-R-Q heterogene 99.2 2.2E-11 4.8E-16 88.7 5.6 58 1-73 78-136 (578)
44 KOG0117|consensus 99.2 1.9E-11 4.1E-16 86.1 5.0 56 1-78 279-334 (506)
45 KOG0144|consensus 99.2 1.7E-11 3.8E-16 86.0 4.6 67 1-81 444-510 (510)
46 TIGR01642 U2AF_lg U2 snRNP aux 99.2 5.3E-11 1.1E-15 84.6 6.8 60 1-74 439-501 (509)
47 KOG0415|consensus 99.2 1.9E-11 4.1E-16 84.5 4.3 60 1-74 259-318 (479)
48 KOG0144|consensus 99.2 1.7E-11 3.7E-16 86.1 3.9 63 1-78 144-209 (510)
49 TIGR01648 hnRNP-R-Q heterogene 99.2 7.3E-11 1.6E-15 86.0 6.9 55 1-77 253-309 (578)
50 KOG0148|consensus 99.2 1.3E-10 2.8E-15 77.9 7.1 57 1-77 184-240 (321)
51 KOG0123|consensus 99.2 6.1E-11 1.3E-15 82.6 5.5 61 1-78 96-156 (369)
52 KOG0147|consensus 99.2 8.4E-11 1.8E-15 84.2 6.1 61 1-75 298-358 (549)
53 cd00590 RRM RRM (RNA recogniti 99.1 3.2E-10 6.9E-15 60.1 6.7 56 1-71 19-74 (74)
54 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.1 2.2E-10 4.8E-15 81.8 6.8 57 1-75 116-174 (481)
55 PLN03121 nucleic acid binding 99.1 3.3E-10 7E-15 74.9 6.2 54 1-72 25-78 (243)
56 KOG0123|consensus 99.1 3E-10 6.6E-15 79.1 6.1 59 1-76 18-76 (369)
57 KOG0114|consensus 99.0 6.6E-10 1.4E-14 65.4 5.6 59 1-76 38-96 (124)
58 KOG4206|consensus 99.0 3.2E-10 7E-15 73.9 4.1 60 1-77 33-92 (221)
59 KOG0109|consensus 99.0 3.7E-10 8.1E-15 76.3 4.4 55 1-77 22-76 (346)
60 KOG0105|consensus 99.0 6.8E-10 1.5E-14 71.3 4.1 58 1-75 26-83 (241)
61 KOG0131|consensus 99.0 4.6E-10 1E-14 71.5 3.2 63 1-77 116-179 (203)
62 KOG4661|consensus 98.9 1.1E-09 2.5E-14 79.6 4.6 61 1-75 425-485 (940)
63 KOG0109|consensus 98.9 1.7E-09 3.6E-14 73.2 4.8 57 1-79 98-154 (346)
64 KOG0127|consensus 98.9 1.6E-09 3.6E-14 78.1 4.4 63 1-77 25-87 (678)
65 KOG0110|consensus 98.8 1.5E-09 3.2E-14 79.8 2.6 62 1-76 633-694 (725)
66 KOG0146|consensus 98.8 1.1E-08 2.4E-13 68.9 4.6 63 1-78 39-104 (371)
67 KOG0124|consensus 98.7 1.9E-08 4.1E-13 70.2 4.1 59 1-73 230-288 (544)
68 KOG0110|consensus 98.7 6.5E-08 1.4E-12 71.4 6.7 62 1-73 535-596 (725)
69 KOG4209|consensus 98.6 1.1E-07 2.4E-12 62.8 5.3 59 2-75 122-180 (231)
70 KOG0226|consensus 98.6 2.1E-08 4.6E-13 66.8 1.8 58 2-73 211-268 (290)
71 KOG4205|consensus 98.5 6.1E-08 1.3E-12 66.4 3.0 62 2-78 27-88 (311)
72 KOG4212|consensus 98.5 2.3E-07 5E-12 66.0 5.6 55 3-72 67-121 (608)
73 KOG1190|consensus 98.5 3.8E-07 8.3E-12 64.3 6.4 56 1-75 318-373 (492)
74 KOG4205|consensus 98.5 1.6E-07 3.4E-12 64.4 4.1 62 2-78 118-179 (311)
75 KOG0132|consensus 98.5 2.4E-07 5.2E-12 69.2 4.9 59 1-79 441-499 (894)
76 KOG2314|consensus 98.3 6.8E-07 1.5E-11 65.1 4.3 56 1-71 84-140 (698)
77 KOG0151|consensus 98.3 7.2E-07 1.6E-11 66.3 4.0 63 1-74 194-256 (877)
78 KOG0153|consensus 98.2 3.9E-06 8.5E-11 58.1 5.8 54 2-75 249-303 (377)
79 KOG0147|consensus 98.2 1.2E-06 2.6E-11 63.3 3.2 58 1-73 199-256 (549)
80 KOG0533|consensus 98.2 4.6E-06 9.9E-11 55.5 5.0 60 1-75 103-162 (243)
81 KOG0120|consensus 98.1 9.4E-06 2E-10 58.7 6.6 62 2-74 430-491 (500)
82 COG5175 MOT2 Transcriptional r 98.1 6.7E-06 1.4E-10 57.2 5.3 63 1-74 140-202 (480)
83 KOG0106|consensus 98.0 3.4E-06 7.3E-11 55.3 1.5 52 1-74 21-72 (216)
84 KOG1548|consensus 97.9 6.2E-05 1.3E-09 52.3 6.7 55 3-75 298-352 (382)
85 KOG4212|consensus 97.9 1.7E-05 3.7E-10 56.7 3.6 52 2-72 557-608 (608)
86 KOG4660|consensus 97.8 3.5E-06 7.6E-11 61.0 -0.6 49 1-68 95-143 (549)
87 KOG0120|consensus 97.8 1.2E-05 2.5E-10 58.2 1.9 60 2-75 310-369 (500)
88 KOG4454|consensus 97.8 1.5E-05 3.2E-10 52.6 2.2 57 1-73 29-85 (267)
89 KOG1457|consensus 97.8 0.00012 2.5E-09 48.6 6.1 38 39-76 79-119 (284)
90 KOG0116|consensus 97.7 6.6E-05 1.4E-09 53.5 4.8 60 1-75 308-367 (419)
91 PF11608 Limkain-b1: Limkain b 97.7 6.9E-05 1.5E-09 42.7 3.5 47 27-73 29-75 (90)
92 KOG1456|consensus 97.6 0.00023 4.9E-09 50.2 6.1 55 1-74 308-362 (494)
93 PF08952 DUF1866: Domain of un 97.5 0.0004 8.7E-09 43.1 5.9 51 2-75 57-107 (146)
94 PF04059 RRM_2: RNA recognitio 97.5 0.00059 1.3E-08 39.7 5.9 56 6-75 28-87 (97)
95 KOG1995|consensus 97.5 5.7E-05 1.2E-09 52.4 1.8 52 11-76 104-155 (351)
96 PF05172 Nup35_RRM: Nup53/35/4 97.4 0.00061 1.3E-08 39.8 5.3 35 38-73 55-90 (100)
97 KOG1456|consensus 97.4 0.00071 1.5E-08 47.8 6.5 56 2-76 143-200 (494)
98 KOG1548|consensus 97.4 0.0004 8.7E-09 48.4 4.9 58 1-73 154-219 (382)
99 KOG2068|consensus 97.3 8.5E-05 1.8E-09 51.2 1.1 63 2-75 101-163 (327)
100 PF14605 Nup35_RRM_2: Nup53/35 97.1 0.00055 1.2E-08 35.5 2.7 33 2-54 21-53 (53)
101 KOG2202|consensus 97.1 0.00015 3.2E-09 48.5 0.2 55 4-73 92-146 (260)
102 KOG4210|consensus 96.9 0.00037 7.9E-09 47.5 1.2 61 2-77 206-266 (285)
103 KOG0106|consensus 96.9 0.00038 8.2E-09 45.7 1.2 36 37-72 133-168 (216)
104 KOG1996|consensus 96.8 0.0043 9.3E-08 42.8 5.3 58 2-72 307-364 (378)
105 KOG4206|consensus 96.3 0.0091 2E-07 39.4 4.4 54 1-73 166-220 (221)
106 KOG4211|consensus 95.9 0.02 4.3E-07 41.7 4.8 48 13-75 39-86 (510)
107 PF08777 RRM_3: RNA binding mo 95.8 0.022 4.7E-07 33.4 4.2 40 1-60 21-60 (105)
108 KOG4307|consensus 95.8 0.02 4.3E-07 43.6 4.7 33 39-71 911-943 (944)
109 KOG1190|consensus 95.7 0.014 3E-07 41.8 3.6 54 1-72 170-225 (492)
110 PF15023 DUF4523: Protein of u 95.6 0.028 6.2E-07 35.1 4.2 50 3-74 112-161 (166)
111 PF03880 DbpA: DbpA RNA bindin 95.5 0.048 1E-06 29.8 4.5 33 39-72 42-74 (74)
112 KOG4285|consensus 95.5 0.021 4.6E-07 39.5 3.5 50 1-71 216-266 (350)
113 KOG1855|consensus 95.4 0.0041 9E-08 44.5 0.1 55 1-61 251-310 (484)
114 KOG0112|consensus 95.3 0.011 2.3E-07 45.7 1.9 55 1-75 475-531 (975)
115 PF11767 SET_assoc: Histone ly 94.7 0.077 1.7E-06 28.7 3.8 29 41-69 37-65 (66)
116 KOG0128|consensus 94.6 0.01 2.3E-07 45.4 0.2 59 1-74 756-814 (881)
117 KOG2135|consensus 94.3 0.022 4.8E-07 41.4 1.3 53 2-75 394-446 (526)
118 PF04847 Calcipressin: Calcipr 94.3 0.13 2.7E-06 33.1 4.6 37 39-75 33-71 (184)
119 PF08675 RNA_bind: RNA binding 94.0 0.18 4E-06 28.7 4.4 36 1-58 28-63 (87)
120 KOG4211|consensus 93.9 0.11 2.3E-06 38.0 4.1 36 36-72 144-179 (510)
121 KOG4574|consensus 93.0 0.043 9.4E-07 42.4 1.0 56 1-76 318-375 (1007)
122 KOG2193|consensus 92.0 0.065 1.4E-06 38.8 0.8 41 37-77 37-78 (584)
123 KOG3152|consensus 92.0 0.036 7.8E-07 37.5 -0.4 56 1-66 94-157 (278)
124 PF07576 BRAP2: BRCA1-associat 91.1 1.2 2.6E-05 26.4 5.5 41 8-64 41-81 (110)
125 KOG4660|consensus 90.8 0.57 1.2E-05 34.7 4.6 41 35-75 429-473 (549)
126 KOG1365|consensus 90.8 0.22 4.7E-06 35.8 2.4 35 37-71 324-358 (508)
127 PF02714 DUF221: Domain of unk 89.0 0.6 1.3E-05 31.7 3.4 35 40-76 1-35 (325)
128 KOG1457|consensus 88.8 0.3 6.5E-06 32.8 1.7 28 36-63 247-274 (284)
129 KOG4849|consensus 87.6 0.43 9.4E-06 34.0 2.0 48 8-69 109-156 (498)
130 KOG2416|consensus 86.0 1.3 2.7E-05 33.6 3.7 36 39-74 483-521 (718)
131 PF10309 DUF2414: Protein of u 85.2 2.7 5.9E-05 22.4 3.9 19 39-57 44-62 (62)
132 KOG0128|consensus 83.5 0.17 3.7E-06 39.2 -1.6 45 2-60 688-732 (881)
133 KOG4676|consensus 81.8 1.3 2.8E-05 32.0 2.3 59 1-71 27-85 (479)
134 KOG0115|consensus 81.2 1.2 2.6E-05 30.3 1.9 42 2-58 52-93 (275)
135 KOG4210|consensus 80.8 1.2 2.6E-05 30.5 1.8 36 38-73 131-166 (285)
136 KOG1365|consensus 74.1 8.1 0.00018 28.1 4.4 20 36-55 205-224 (508)
137 KOG4307|consensus 72.2 2 4.3E-05 33.2 1.1 33 39-71 478-510 (944)
138 PF08206 OB_RNB: Ribonuclease 68.5 1.1 2.4E-05 23.2 -0.6 38 35-73 6-44 (58)
139 KOG0804|consensus 61.8 17 0.00038 26.8 4.1 42 7-64 101-142 (493)
140 PF03439 Spt5-NGN: Early trans 59.5 19 0.00041 19.9 3.3 25 37-61 44-68 (84)
141 KOG0129|consensus 59.0 19 0.00042 26.8 4.0 39 4-56 394-432 (520)
142 KOG4019|consensus 57.1 23 0.00049 23.1 3.6 40 36-75 50-90 (193)
143 PF11823 DUF3343: Protein of u 56.8 18 0.0004 19.3 2.9 27 39-65 3-29 (73)
144 KOG0129|consensus 56.3 80 0.0017 23.7 6.7 20 38-57 307-326 (520)
145 PF07530 PRE_C2HC: Associated 51.6 31 0.00068 18.5 3.2 35 39-76 32-66 (68)
146 KOG2187|consensus 51.3 8.8 0.00019 28.7 1.2 37 38-74 64-100 (534)
147 KOG2591|consensus 48.2 38 0.00083 25.9 4.1 28 40-67 215-244 (684)
148 KOG0112|consensus 46.4 4.2 9E-05 32.2 -1.1 57 1-72 392-448 (975)
149 COG5594 Uncharacterized integr 45.3 35 0.00076 27.0 3.6 29 36-64 356-384 (827)
150 PF05573 NosL: NosL; InterPro 40.6 32 0.0007 21.0 2.4 25 35-59 112-136 (149)
151 KOG2318|consensus 39.4 56 0.0012 25.1 3.8 33 39-71 270-302 (650)
152 PRK08559 nusG transcription an 37.6 55 0.0012 20.1 3.2 24 37-60 46-69 (153)
153 PF03467 Smg4_UPF3: Smg-4/UPF3 35.8 59 0.0013 20.6 3.1 35 39-73 57-96 (176)
154 smart00596 PRE_C2HC PRE_C2HC d 35.7 63 0.0014 17.6 2.8 52 8-76 15-66 (69)
155 TIGR00405 L26e_arch ribosomal 35.7 48 0.001 19.9 2.7 26 36-61 37-62 (145)
156 PF11181 YflT: Heat induced st 34.9 40 0.00088 19.2 2.1 28 42-69 4-31 (103)
157 PRK11634 ATP-dependent RNA hel 34.7 81 0.0017 24.0 4.1 35 38-73 527-561 (629)
158 PF12829 Mhr1: Transcriptional 33.7 67 0.0015 18.4 2.8 22 37-58 51-72 (91)
159 KOG0105|consensus 32.8 92 0.002 20.6 3.6 29 35-63 148-176 (241)
160 COG0150 PurM Phosphoribosylami 32.1 44 0.00096 23.8 2.3 26 35-60 297-322 (345)
161 PF10567 Nab6_mRNP_bdg: RNA-re 32.0 79 0.0017 22.1 3.4 16 2-17 36-51 (309)
162 PF03108 DBD_Tnp_Mut: MuDR fam 31.7 73 0.0016 16.4 2.7 29 42-72 8-36 (67)
163 KOG2891|consensus 31.0 3.9 8.5E-05 28.5 -3.0 52 2-62 182-247 (445)
164 PF07292 NID: Nmi/IFP 35 domai 30.8 1.1E+02 0.0023 17.4 3.9 31 40-71 1-33 (88)
165 KOG1134|consensus 30.7 1E+02 0.0022 24.2 4.1 38 36-75 304-341 (728)
166 PRK00911 dihydroxy-acid dehydr 29.3 1.1E+02 0.0024 23.2 4.0 38 36-76 397-434 (552)
167 PRK12448 dihydroxy-acid dehydr 29.2 1.2E+02 0.0025 23.5 4.1 37 37-76 448-484 (615)
168 PF13689 DUF4154: Domain of un 28.9 1.3E+02 0.0028 18.0 3.8 33 39-72 28-60 (145)
169 smart00738 NGN In Spt5p, this 28.7 48 0.001 18.5 1.7 23 38-60 60-82 (106)
170 TIGR00110 ilvD dihydroxy-acid 28.6 1.2E+02 0.0025 23.0 4.0 38 36-76 382-419 (535)
171 PF04026 SpoVG: SpoVG; InterP 28.2 1.2E+02 0.0025 17.0 3.7 26 7-46 2-27 (84)
172 PF07711 RabGGT_insert: Rab ge 27.6 16 0.00034 21.4 -0.4 38 39-79 14-51 (102)
173 COG5507 Uncharacterized conser 26.2 73 0.0016 18.8 2.2 20 38-57 67-86 (117)
174 COG0129 IlvD Dihydroxyacid deh 25.9 1.4E+02 0.0031 22.8 4.1 33 42-76 419-451 (575)
175 PF11910 NdhO: Cyanobacterial 25.8 1.1E+02 0.0024 16.5 2.6 9 39-47 45-53 (67)
176 PRK08211 putative dehydratase; 23.9 1.5E+02 0.0032 23.1 3.9 37 37-76 470-506 (655)
177 PRK11230 glycolate oxidase sub 23.8 2.8E+02 0.0061 20.5 5.3 40 4-58 216-255 (499)
178 COG2088 SpoVG Uncharacterized 23.7 1.5E+02 0.0032 17.1 3.0 27 7-47 2-28 (95)
179 PRK15464 cold shock-like prote 23.0 46 0.00099 17.9 0.9 35 39-74 18-58 (70)
180 PRK14998 cold shock-like prote 23.0 52 0.0011 17.8 1.1 8 39-46 15-22 (73)
181 PF14657 Integrase_AP2: AP2-li 22.9 1.1E+02 0.0023 14.7 3.2 29 15-57 9-37 (46)
182 TIGR01196 edd 6-phosphoglucona 22.5 1.6E+02 0.0036 22.6 3.9 36 38-76 445-480 (601)
183 PRK09937 stationary phase/star 22.5 51 0.0011 17.9 1.0 8 39-46 15-22 (74)
184 PF14882 GHL12: Hypothetical g 22.5 75 0.0016 16.2 1.6 15 43-57 39-53 (53)
185 TIGR03432 yjhG_yagF probable d 22.4 1.6E+02 0.0036 22.8 3.9 37 37-76 464-500 (640)
186 PRK09054 phosphogluconate dehy 22.2 1.7E+02 0.0036 22.6 3.9 36 38-76 446-481 (603)
187 PLN02805 D-lactate dehydrogena 22.1 3E+02 0.0065 20.8 5.2 20 39-58 313-332 (555)
188 PRK13259 regulatory protein Sp 22.1 1.7E+02 0.0038 16.8 3.7 26 7-46 2-27 (94)
189 PRK15463 cold shock-like prote 22.0 52 0.0011 17.6 0.9 36 39-74 18-58 (70)
190 PRK09507 cspE cold shock prote 21.5 51 0.0011 17.5 0.8 9 39-47 17-25 (69)
191 PF00313 CSD: 'Cold-shock' DNA 21.1 81 0.0018 16.1 1.6 10 39-48 14-23 (66)
192 TIGR02381 cspD cold shock doma 20.7 63 0.0014 17.1 1.1 35 39-74 15-55 (68)
193 PRK10943 cold shock-like prote 20.3 54 0.0012 17.4 0.8 36 39-74 17-57 (69)
194 PF08156 NOP5NT: NOP5NT (NUC12 20.0 74 0.0016 16.9 1.3 19 39-57 46-64 (67)
No 1
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.71 E-value=7.1e-17 Score=99.54 Aligned_cols=63 Identities=33% Similarity=0.667 Sum_probs=59.5
Q ss_pred CccCCceeeEEEEEecCCCCCcccccccccccccCcceEEEEEEcCHHHHHHHHHhhCCcEECCEEEEEEeeCCCCC
Q psy16913 1 MFLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQIGMKRLKVQLKRPKDA 77 (81)
Q Consensus 1 lF~~~G~i~~v~i~~~~~~~~~kg~~~~~~~~~~~~~~~~fV~f~~~~~A~~Ai~~lng~~i~g~~i~V~~a~~~~~ 77 (81)
+|++||+|.++.|+.|+.+++++| ||||+|.+.++|+.|++.||+..|+|+.|+|+++.++..
T Consensus 54 ~F~~~G~I~~v~i~~d~~tg~~kG--------------faFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~a~~~~~ 116 (144)
T PLN03134 54 AFAHFGDVVDAKVIVDRETGRSRG--------------FGFVNFNDEGAATAAISEMDGKELNGRHIRVNPANDRPS 116 (144)
T ss_pred HHhcCCCeEEEEEEecCCCCCcce--------------EEEEEECCHHHHHHHHHHcCCCEECCEEEEEEeCCcCCC
Confidence 589999999999999999999999 999999999999999999999999999999999977653
No 2
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.70 E-value=5.7e-17 Score=110.28 Aligned_cols=64 Identities=41% Similarity=0.620 Sum_probs=60.8
Q ss_pred CccCCceeeEEEEEecCCCCCcccccccccccccCcceEEEEEEcCHHHHHHHHHhhCCcEECCEEEEEEeeCCCCCC
Q psy16913 1 MFLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQIGMKRLKVQLKRPKDAA 78 (81)
Q Consensus 1 lF~~~G~i~~v~i~~~~~~~~~kg~~~~~~~~~~~~~~~~fV~f~~~~~A~~Ai~~lng~~i~g~~i~V~~a~~~~~~ 78 (81)
+|++||+|.+++|++|+.|+.++| ||||+|.+.++|..||..|||..++||.|+|+|+.++..+
T Consensus 289 ~F~~fG~v~~v~i~~d~~t~~skG--------------~aFV~F~~~~~A~~Ai~~lnG~~~~gr~i~V~~~~~~~~~ 352 (352)
T TIGR01661 289 LFGPFGAVQNVKIIRDLTTNQCKG--------------YGFVSMTNYDEAAMAILSLNGYTLGNRVLQVSFKTNKAYR 352 (352)
T ss_pred HHHhCCCeEEEEEeEcCCCCCccc--------------eEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEccCCCCC
Confidence 589999999999999999999999 9999999999999999999999999999999999887653
No 3
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.63 E-value=2.6e-15 Score=78.71 Aligned_cols=53 Identities=36% Similarity=0.599 Sum_probs=47.7
Q ss_pred CccCCceeeEEEEEecCCCCCcccccccccccccCcceEEEEEEcCHHHHHHHHHhhCCcEECCEEEEEEee
Q psy16913 1 MFLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQIGMKRLKVQLK 72 (81)
Q Consensus 1 lF~~~G~i~~v~i~~~~~~~~~kg~~~~~~~~~~~~~~~~fV~f~~~~~A~~Ai~~lng~~i~g~~i~V~~a 72 (81)
+|++||+|.++.+..++ ++ +|||+|.+.++|+.|++.|||..+.|++|+|+||
T Consensus 4 ~f~~fG~V~~i~~~~~~-----~~--------------~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 4 LFSKFGEVKKIKIFKKK-----RG--------------FAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHTTTS-EEEEEEETTS-----TT--------------EEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred HhCCcccEEEEEEEeCC-----CC--------------EEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 48999999999987654 46 9999999999999999999999999999999986
No 4
>KOG0146|consensus
Probab=99.62 E-value=2.1e-16 Score=105.56 Aligned_cols=67 Identities=88% Similarity=1.397 Sum_probs=65.3
Q ss_pred CccCCceeeEEEEEecCCCCCcccccccccccccCcceEEEEEEcCHHHHHHHHHhhCCcEECCEEEEEEeeCCCCCCCC
Q psy16913 1 MFLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQIGMKRLKVQLKRPKDAARP 80 (81)
Q Consensus 1 lF~~~G~i~~v~i~~~~~~~~~kg~~~~~~~~~~~~~~~~fV~f~~~~~A~~Ai~~lng~~i~g~~i~V~~a~~~~~~~~ 80 (81)
+|-.||.|++.++..|+.|+.||+ ||||.|+++.+|+.||..|||+.|..++|+|++.+|++..+|
T Consensus 305 mF~PFGhivSaKVFvDRATNQSKC--------------FGFVSfDNp~SaQaAIqAMNGFQIGMKRLKVQLKRPkdanRP 370 (371)
T KOG0146|consen 305 MFLPFGHIVSAKVFVDRATNQSKC--------------FGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQLKRPKDANRP 370 (371)
T ss_pred Hhccccceeeeeeeehhccccccc--------------eeeEecCCchhHHHHHHHhcchhhhhhhhhhhhcCccccCCC
Confidence 488999999999999999999999 999999999999999999999999999999999999999999
Q ss_pred C
Q psy16913 81 Y 81 (81)
Q Consensus 81 ~ 81 (81)
|
T Consensus 371 Y 371 (371)
T KOG0146|consen 371 Y 371 (371)
T ss_pred C
Confidence 8
No 5
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.62 E-value=1.6e-15 Score=103.13 Aligned_cols=63 Identities=33% Similarity=0.629 Sum_probs=59.6
Q ss_pred CccCCceeeEEEEEecCCCCCcccccccccccccCcceEEEEEEcCHHHHHHHHHhhCCcEECCEEEEEEeeCCCCC
Q psy16913 1 MFLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQIGMKRLKVQLKRPKDA 77 (81)
Q Consensus 1 lF~~~G~i~~v~i~~~~~~~~~kg~~~~~~~~~~~~~~~~fV~f~~~~~A~~Ai~~lng~~i~g~~i~V~~a~~~~~ 77 (81)
+|++||+|.+|+|++|+.+|+++| ||||+|.++++|++||+.|||..+.|+.|.|.++.+...
T Consensus 23 ~F~~~G~i~~v~i~~d~~~g~s~g--------------~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a~~~~~ 85 (352)
T TIGR01661 23 LFTSIGEIESCKLVRDKVTGQSLG--------------YGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYARPSSD 85 (352)
T ss_pred HHHccCCEEEEEEEEcCCCCccce--------------EEEEEECcHHHHHHHHhhcccEEECCeeEEEEeeccccc
Confidence 589999999999999999999999 999999999999999999999999999999999987653
No 6
>KOG0122|consensus
Probab=99.59 E-value=3.3e-15 Score=98.24 Aligned_cols=62 Identities=32% Similarity=0.574 Sum_probs=59.8
Q ss_pred CccCCceeeEEEEEecCCCCCcccccccccccccCcceEEEEEEcCHHHHHHHHHhhCCcEECCEEEEEEeeCCCC
Q psy16913 1 MFLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQIGMKRLKVQLKRPKD 76 (81)
Q Consensus 1 lF~~~G~i~~v~i~~~~~~~~~kg~~~~~~~~~~~~~~~~fV~f~~~~~A~~Ai~~lng~~i~g~~i~V~~a~~~~ 76 (81)
||.+||+|.++.+.+|+.||.++| ||||+|.+.++|++||..|||+-+++-.|+|+|++|+.
T Consensus 209 Lf~~fg~i~rvylardK~TG~~kG--------------FAFVtF~sRddA~rAI~~LnG~gyd~LILrvEwskP~~ 270 (270)
T KOG0122|consen 209 LFRPFGPITRVYLARDKETGLSKG--------------FAFVTFESRDDAARAIADLNGYGYDNLILRVEWSKPSN 270 (270)
T ss_pred HhhccCccceeEEEEccccCcccc--------------eEEEEEecHHHHHHHHHHccCcccceEEEEEEecCCCC
Confidence 688999999999999999999999 99999999999999999999999999999999999873
No 7
>KOG0148|consensus
Probab=99.58 E-value=4e-15 Score=99.22 Aligned_cols=61 Identities=43% Similarity=0.653 Sum_probs=58.9
Q ss_pred ccCCceeeEEEEEecCCCCCcccccccccccccCcceEEEEEEcCHHHHHHHHHhhCCcEECCEEEEEEeeCCCC
Q psy16913 2 FLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQIGMKRLKVQLKRPKD 76 (81)
Q Consensus 2 F~~~G~i~~v~i~~~~~~~~~kg~~~~~~~~~~~~~~~~fV~f~~~~~A~~Ai~~lng~~i~g~~i~V~~a~~~~ 76 (81)
|.+||+|.+++|++|..|+++|| ||||.|.+.++|++||..|||.-|.+|.|+-+||..|.
T Consensus 83 F~pFGevS~akvirD~~T~KsKG--------------YgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNWATRKp 143 (321)
T KOG0148|consen 83 FAPFGEVSDAKVIRDMNTGKSKG--------------YGFVSFPNKEDAENAIQQMNGQWLGRRTIRTNWATRKP 143 (321)
T ss_pred hccccccccceEeecccCCcccc--------------eeEEeccchHHHHHHHHHhCCeeeccceeeccccccCc
Confidence 78999999999999999999999 99999999999999999999999999999999997765
No 8
>KOG4207|consensus
Probab=99.56 E-value=1.7e-15 Score=97.93 Aligned_cols=60 Identities=35% Similarity=0.515 Sum_probs=57.8
Q ss_pred CccCCceeeEEEEEecCCCCCcccccccccccccCcceEEEEEEcCHHHHHHHHHhhCCcEECCEEEEEEeeCC
Q psy16913 1 MFLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQIGMKRLKVQLKRP 74 (81)
Q Consensus 1 lF~~~G~i~~v~i~~~~~~~~~kg~~~~~~~~~~~~~~~~fV~f~~~~~A~~Ai~~lng~~i~g~~i~V~~a~~ 74 (81)
+|++||.|-+|.|++|+.|+.++| ||||-|.+..||+.|+++|+|.+|+|+.|.|++|+-
T Consensus 33 vFekYG~vgDVyIPrdr~Tr~sRg--------------FaFVrf~~k~daedA~damDG~~ldgRelrVq~ary 92 (256)
T KOG4207|consen 33 VFEKYGRVGDVYIPRDRYTRQSRG--------------FAFVRFHDKRDAEDALDAMDGAVLDGRELRVQMARY 92 (256)
T ss_pred HHHHhCcccceecccccccccccc--------------eeEEEeeecchHHHHHHhhcceeeccceeeehhhhc
Confidence 599999999999999999999999 999999999999999999999999999999999854
No 9
>KOG0125|consensus
Probab=99.55 E-value=6.1e-15 Score=100.29 Aligned_cols=59 Identities=31% Similarity=0.592 Sum_probs=53.8
Q ss_pred CccCCceeeEEEEEecCCCCCcccccccccccccCcceEEEEEEcCHHHHHHHHHhhCCcEECCEEEEEEeeCCC
Q psy16913 1 MFLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQIGMKRLKVQLKRPK 75 (81)
Q Consensus 1 lF~~~G~i~~v~i~~~~~~~~~kg~~~~~~~~~~~~~~~~fV~f~~~~~A~~Ai~~lng~~i~g~~i~V~~a~~~ 75 (81)
+|++||+|.+|.||.+. .-||| ||||+|++++||++|.++|||..+.||+|.|+.|.++
T Consensus 116 MF~kfG~VldVEIIfNE--RGSKG--------------FGFVTmen~~dadRARa~LHgt~VEGRkIEVn~ATar 174 (376)
T KOG0125|consen 116 MFEKFGKVLDVEIIFNE--RGSKG--------------FGFVTMENPADADRARAELHGTVVEGRKIEVNNATAR 174 (376)
T ss_pred HHHhhCceeeEEEEecc--CCCCc--------------cceEEecChhhHHHHHHHhhcceeeceEEEEeccchh
Confidence 59999999999999985 34566 9999999999999999999999999999999999664
No 10
>smart00361 RRM_1 RNA recognition motif.
Probab=99.55 E-value=2.7e-14 Score=78.11 Aligned_cols=52 Identities=25% Similarity=0.418 Sum_probs=47.6
Q ss_pred CCceeeEEE-EEecCCC--CCcccccccccccccCcceEEEEEEcCHHHHHHHHHhhCCcEECCEEEEE
Q psy16913 4 PFGNVISSK-VFIDRAT--NQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQIGMKRLKV 69 (81)
Q Consensus 4 ~~G~i~~v~-i~~~~~~--~~~kg~~~~~~~~~~~~~~~~fV~f~~~~~A~~Ai~~lng~~i~g~~i~V 69 (81)
+||+|.++. ++.++.+ +.++| ||||+|.++++|.+|+..|||..+.|+.|++
T Consensus 15 ~fG~v~~v~~v~~~~~~~~~~~rG--------------~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~ 69 (70)
T smart00361 15 YFGEVGKINKIYIDNVGYENHKRG--------------NVYITFERSEDAARAIVDLNGRYFDGRTVKA 69 (70)
T ss_pred hcCCeeEEEEEEeCCCCCCCCCcE--------------EEEEEECCHHHHHHHHHHhCCCEECCEEEEe
Confidence 899999995 7777766 88888 9999999999999999999999999999986
No 11
>KOG0145|consensus
Probab=99.54 E-value=1.2e-14 Score=96.96 Aligned_cols=63 Identities=35% Similarity=0.608 Sum_probs=60.6
Q ss_pred CccCCceeeEEEEEecCCCCCcccccccccccccCcceEEEEEEcCHHHHHHHHHhhCCcEECCEEEEEEeeCCCCC
Q psy16913 1 MFLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQIGMKRLKVQLKRPKDA 77 (81)
Q Consensus 1 lF~~~G~i~~v~i~~~~~~~~~kg~~~~~~~~~~~~~~~~fV~f~~~~~A~~Ai~~lng~~i~g~~i~V~~a~~~~~ 77 (81)
||+..|+|++|++++|+.+|++-| ||||-|.+++||++||..|||..+..+.|+|.+|+|..+
T Consensus 61 LF~SiGeiEScKLvRDKitGqSLG--------------YGFVNYv~p~DAe~AintlNGLrLQ~KTIKVSyARPSs~ 123 (360)
T KOG0145|consen 61 LFGSIGEIESCKLVRDKITGQSLG--------------YGFVNYVRPKDAEKAINTLNGLRLQNKTIKVSYARPSSD 123 (360)
T ss_pred Hhhcccceeeeeeeeccccccccc--------------cceeeecChHHHHHHHhhhcceeeccceEEEEeccCChh
Confidence 689999999999999999999999 999999999999999999999999999999999999754
No 12
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.54 E-value=1.6e-14 Score=99.66 Aligned_cols=61 Identities=33% Similarity=0.558 Sum_probs=58.2
Q ss_pred CccCCceeeEEEEEecCCCCCcccccccccccccCcceEEEEEEcCHHHHHHHHHhhCCcEECCEEEEEEeeCCC
Q psy16913 1 MFLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQIGMKRLKVQLKRPK 75 (81)
Q Consensus 1 lF~~~G~i~~v~i~~~~~~~~~kg~~~~~~~~~~~~~~~~fV~f~~~~~A~~Ai~~lng~~i~g~~i~V~~a~~~ 75 (81)
+|+.||+|.+|+|+.|+.+++++| ||||+|.++++|++|++.|||..+.+++|+|.++.+.
T Consensus 127 lF~~~G~V~~v~i~~d~~tg~srG--------------yaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~~a~p~ 187 (346)
T TIGR01659 127 LFRTIGPINTCRIMRDYKTGYSFG--------------YAFVDFGSEADSQRAIKNLNGITVRNKRLKVSYARPG 187 (346)
T ss_pred HHHhcCCEEEEEEEecCCCCccCc--------------EEEEEEccHHHHHHHHHHcCCCccCCceeeeeccccc
Confidence 589999999999999999999999 9999999999999999999999999999999998764
No 13
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.49 E-value=1.4e-13 Score=100.49 Aligned_cols=62 Identities=26% Similarity=0.442 Sum_probs=58.6
Q ss_pred CccCCceeeEEEEEecCCCCCcccccccccccccCcceEEEEEEcCHHHHHHHHHhhCCcEECCEEEEEEeeCCCC
Q psy16913 1 MFLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQIGMKRLKVQLKRPKD 76 (81)
Q Consensus 1 lF~~~G~i~~v~i~~~~~~~~~kg~~~~~~~~~~~~~~~~fV~f~~~~~A~~Ai~~lng~~i~g~~i~V~~a~~~~ 76 (81)
+|+.||+|.+++|++|+.++.++| ||||+|.+.++|.+||+.|||..++|+.|+|.++.++.
T Consensus 224 lFs~FG~I~svrl~~D~~tgksKG--------------fGFVeFe~~e~A~kAI~amNg~elgGr~LrV~kAi~pP 285 (612)
T TIGR01645 224 VFEAFGEIVKCQLARAPTGRGHKG--------------YGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCVTPP 285 (612)
T ss_pred HHhhcCCeeEEEEEecCCCCCcCC--------------eEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEecCCCc
Confidence 589999999999999998999999 99999999999999999999999999999999997643
No 14
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.47 E-value=2e-13 Score=73.22 Aligned_cols=53 Identities=30% Similarity=0.612 Sum_probs=48.9
Q ss_pred CccCCceeeEEEEEecCCCCCcccccccccccccCcceEEEEEEcCHHHHHHHHHhhCCcEECCEEEE
Q psy16913 1 MFLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQIGMKRLK 68 (81)
Q Consensus 1 lF~~~G~i~~v~i~~~~~~~~~kg~~~~~~~~~~~~~~~~fV~f~~~~~A~~Ai~~lng~~i~g~~i~ 68 (81)
+|++||+|..+.++.+ .++.+++ +|||+|.+.++|+.|++.|||..+.|+.|+
T Consensus 18 ~f~~~g~i~~~~~~~~-~~~~~~~--------------~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 18 FFSQFGKIESIKVMRN-SSGKSKG--------------YAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp HHHTTSTEEEEEEEEE-TTSSEEE--------------EEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred HHHHhhhccccccccc-ccccccc--------------eEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 4889999999999998 5778888 999999999999999999999999999885
No 15
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.47 E-value=1.3e-13 Score=100.56 Aligned_cols=60 Identities=35% Similarity=0.552 Sum_probs=56.5
Q ss_pred CccCCceeeEEEEEecCCCCCcccccccccccccCcceEEEEEEcCHHHHHHHHHhhCCcEECCEEEEEEeeCC
Q psy16913 1 MFLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQIGMKRLKVQLKRP 74 (81)
Q Consensus 1 lF~~~G~i~~v~i~~~~~~~~~kg~~~~~~~~~~~~~~~~fV~f~~~~~A~~Ai~~lng~~i~g~~i~V~~a~~ 74 (81)
+|++||+|.+|+|+.|+.+++++| ||||+|.++++|++|++.|||..++|+.|+|+++..
T Consensus 127 lF~~fG~I~sV~I~~D~~TgkskG--------------fAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp~~ 186 (612)
T TIGR01645 127 AFDPFGPIKSINMSWDPATGKHKG--------------FAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPSN 186 (612)
T ss_pred HHHccCCEEEEEEeecCCCCCcCC--------------eEEEEeCcHHHHHHHHHhcCCeEEecceeeeccccc
Confidence 589999999999999999999999 999999999999999999999999999999987543
No 16
>KOG0126|consensus
Probab=99.47 E-value=3.1e-14 Score=90.58 Aligned_cols=58 Identities=24% Similarity=0.525 Sum_probs=55.7
Q ss_pred CccCCceeeEEEEEecCCCCCcccccccccccccCcceEEEEEEcCHHHHHHHHHhhCCcEECCEEEEEEee
Q psy16913 1 MFLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQIGMKRLKVQLK 72 (81)
Q Consensus 1 lF~~~G~i~~v~i~~~~~~~~~kg~~~~~~~~~~~~~~~~fV~f~~~~~A~~Ai~~lng~~i~g~~i~V~~a 72 (81)
+|++||.|+.|.+++|+.||+|+| |||++|++..+.--|+..|||..|.||.|+|+..
T Consensus 55 VFSqyGe~vdinLiRDk~TGKSKG--------------FaFLcYEDQRSTILAVDN~NGiki~gRtirVDHv 112 (219)
T KOG0126|consen 55 VFSQYGEIVDINLIRDKKTGKSKG--------------FAFLCYEDQRSTILAVDNLNGIKILGRTIRVDHV 112 (219)
T ss_pred EeeccCceEEEEEEecCCCCcccc--------------eEEEEecCccceEEEEeccCCceecceeEEeeec
Confidence 599999999999999999999999 9999999999999999999999999999999875
No 17
>KOG0111|consensus
Probab=99.46 E-value=4.3e-14 Score=92.41 Aligned_cols=62 Identities=29% Similarity=0.622 Sum_probs=59.0
Q ss_pred ccCCceeeEEEEEecCCCCCcccccccccccccCcceEEEEEEcCHHHHHHHHHhhCCcEECCEEEEEEeeCCCCC
Q psy16913 2 FLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQIGMKRLKVQLKRPKDA 77 (81)
Q Consensus 2 F~~~G~i~~v~i~~~~~~~~~kg~~~~~~~~~~~~~~~~fV~f~~~~~A~~Ai~~lng~~i~g~~i~V~~a~~~~~ 77 (81)
|-+||.|..|.++.|-.++++|| ||||+|+..+||..||..||+.++.||.|+|++|+|.+.
T Consensus 31 FIPFGDI~dIqiPlDyesqkHRg--------------FgFVefe~aEDAaaAiDNMnesEL~GrtirVN~AkP~ki 92 (298)
T KOG0111|consen 31 FIPFGDIKDIQIPLDYESQKHRG--------------FGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLAKPEKI 92 (298)
T ss_pred cccccchhhcccccchhcccccc--------------eeEEEeeccchhHHHhhcCchhhhcceeEEEeecCCccc
Confidence 67899999999999999999999 999999999999999999999999999999999998653
No 18
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.45 E-value=3.2e-13 Score=93.27 Aligned_cols=63 Identities=24% Similarity=0.432 Sum_probs=57.9
Q ss_pred CccCCceeeEEEEEecCCCCCcccccccccccccCcceEEEEEEcCHHHHHHHHHhhCCcEECC--EEEEEEeeCCCCC
Q psy16913 1 MFLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQIGM--KRLKVQLKRPKDA 77 (81)
Q Consensus 1 lF~~~G~i~~v~i~~~~~~~~~kg~~~~~~~~~~~~~~~~fV~f~~~~~A~~Ai~~lng~~i~g--~~i~V~~a~~~~~ 77 (81)
+|++||.|..++|+.|+.+++++| ||||+|.+.++|++||+.||+..+.+ ++|.|.++..+..
T Consensus 213 ~F~~fG~V~~v~i~~d~~tg~~kG--------------~aFV~F~~~e~A~~Ai~~lng~~~~g~~~~l~V~~a~~~~~ 277 (346)
T TIGR01659 213 IFGKYGQIVQKNILRDKLTGTPRG--------------VAFVRFNKREEAQEAISALNNVIPEGGSQPLTVRLAEEHGK 277 (346)
T ss_pred HHHhcCCEEEEEEeecCCCCccce--------------EEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEECCcccc
Confidence 589999999999999999999999 99999999999999999999999876 7899999976543
No 19
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.44 E-value=1.8e-13 Score=98.51 Aligned_cols=62 Identities=39% Similarity=0.648 Sum_probs=58.1
Q ss_pred CccCCceeeEEEEEecCCCCCcccccccccccccCcceEEEEEEcCHHHHHHHHHhhCCcEECCEEEEEEeeCCCCC
Q psy16913 1 MFLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQIGMKRLKVQLKRPKDA 77 (81)
Q Consensus 1 lF~~~G~i~~v~i~~~~~~~~~kg~~~~~~~~~~~~~~~~fV~f~~~~~A~~Ai~~lng~~i~g~~i~V~~a~~~~~ 77 (81)
+|++||.|.+++++.| .+|.++| ||||+|.+.++|.+|+..|||..+.|++|.|.+|.++..
T Consensus 305 ~F~~~G~i~~~~i~~d-~~g~~~g--------------~gfV~f~~~~~A~~A~~~~~g~~~~gk~l~V~~a~~k~~ 366 (562)
T TIGR01628 305 LFSECGEITSAKVMLD-EKGVSRG--------------FGFVCFSNPEEANRAVTEMHGRMLGGKPLYVALAQRKEQ 366 (562)
T ss_pred HHHhcCCeEEEEEEEC-CCCCcCC--------------eEEEEeCCHHHHHHHHHHhcCCeeCCceeEEEeccCcHH
Confidence 5899999999999999 4899999 999999999999999999999999999999999987654
No 20
>KOG0149|consensus
Probab=99.44 E-value=1e-13 Score=90.78 Aligned_cols=57 Identities=30% Similarity=0.508 Sum_probs=53.3
Q ss_pred ccCCceeeEEEEEecCCCCCcccccccccccccCcceEEEEEEcCHHHHHHHHHhhCCcEECCEEEEEEeeC
Q psy16913 2 FLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQIGMKRLKVQLKR 73 (81)
Q Consensus 2 F~~~G~i~~v~i~~~~~~~~~kg~~~~~~~~~~~~~~~~fV~f~~~~~A~~Ai~~lng~~i~g~~i~V~~a~ 73 (81)
|++||+|+++.||.|+.||+||| ||||+|.+.+.|.+|++..| -.|+||+-.+++|.
T Consensus 33 FeqfGeI~eavvitd~~t~rskG--------------yGfVTf~d~~aa~rAc~dp~-piIdGR~aNcnlA~ 89 (247)
T KOG0149|consen 33 FEQFGEIVEAVVITDKNTGRSKG--------------YGFVTFRDAEAATRACKDPN-PIIDGRKANCNLAS 89 (247)
T ss_pred HHHhCceEEEEEEeccCCccccc--------------eeeEEeecHHHHHHHhcCCC-Ccccccccccchhh
Confidence 89999999999999999999999 99999999999999999655 67999999999974
No 21
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.41 E-value=7e-13 Score=95.51 Aligned_cols=60 Identities=37% Similarity=0.643 Sum_probs=57.1
Q ss_pred CccCCceeeEEEEEecCCCCCcccccccccccccCcceEEEEEEcCHHHHHHHHHhhCCcEECCEEEEEEeeCC
Q psy16913 1 MFLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQIGMKRLKVQLKRP 74 (81)
Q Consensus 1 lF~~~G~i~~v~i~~~~~~~~~kg~~~~~~~~~~~~~~~~fV~f~~~~~A~~Ai~~lng~~i~g~~i~V~~a~~ 74 (81)
+|++||+|.+|+|++|+.|++++| ||||+|.++++|++|++.+|+..+.|+.|+|.|+..
T Consensus 20 ~F~~~G~v~~v~v~~d~~t~~s~G--------------~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~~s~~ 79 (562)
T TIGR01628 20 LFKPFGPVLSVRVCRDSVTRRSLG--------------YGYVNFQNPADAERALETMNFKRLGGKPIRIMWSQR 79 (562)
T ss_pred HHHhcCCEEEEEEEecCCCCCcce--------------EEEEEECCHHHHHHHHHHhCCCEECCeeEEeecccc
Confidence 589999999999999999999999 999999999999999999999999999999999854
No 22
>KOG0113|consensus
Probab=99.41 E-value=7.9e-13 Score=89.13 Aligned_cols=61 Identities=21% Similarity=0.498 Sum_probs=57.9
Q ss_pred ccCCceeeEEEEEecCCCCCcccccccccccccCcceEEEEEEcCHHHHHHHHHhhCCcEECCEEEEEEeeCCCC
Q psy16913 2 FLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQIGMKRLKVQLKRPKD 76 (81)
Q Consensus 2 F~~~G~i~~v~i~~~~~~~~~kg~~~~~~~~~~~~~~~~fV~f~~~~~A~~Ai~~lng~~i~g~~i~V~~a~~~~ 76 (81)
|+.||+|..+.|+.|+.||+++| ||||+|+++.+...|-+..+|.+|+|+.|.|++...+.
T Consensus 122 F~~YG~IkrirlV~d~vTgkskG--------------YAFIeye~erdm~~AYK~adG~~Idgrri~VDvERgRT 182 (335)
T KOG0113|consen 122 FEKYGPIKRIRLVRDKVTGKSKG--------------YAFIEYEHERDMKAAYKDADGIKIDGRRILVDVERGRT 182 (335)
T ss_pred HHhcCcceeEEEeeecccCCccc--------------eEEEEeccHHHHHHHHHhccCceecCcEEEEEeccccc
Confidence 88999999999999999999999 99999999999999999999999999999999876554
No 23
>smart00360 RRM RNA recognition motif.
Probab=99.39 E-value=1.5e-12 Score=68.58 Aligned_cols=56 Identities=36% Similarity=0.631 Sum_probs=51.4
Q ss_pred CccCCceeeEEEEEecCCCCCcccccccccccccCcceEEEEEEcCHHHHHHHHHhhCCcEECCEEEEEE
Q psy16913 1 MFLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQIGMKRLKVQ 70 (81)
Q Consensus 1 lF~~~G~i~~v~i~~~~~~~~~kg~~~~~~~~~~~~~~~~fV~f~~~~~A~~Ai~~lng~~i~g~~i~V~ 70 (81)
+|++||+|..+.++.++.++.++| +|||+|.+.++|..|+..+++..+.|+.|.|+
T Consensus 16 ~f~~~g~v~~~~i~~~~~~~~~~~--------------~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 16 LFSKFGKIESVRLVRDKDTGKSKG--------------FAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred HHHhhCCEeEEEEEeCCCCCCCCc--------------eEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 478899999999999887788888 99999999999999999999999999998874
No 24
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.38 E-value=2e-12 Score=90.90 Aligned_cols=60 Identities=33% Similarity=0.667 Sum_probs=56.9
Q ss_pred CccCCceeeEEEEEecCCCCCcccccccccccccCcceEEEEEEcCHHHHHHHHHhhCCcEECCEEEEEEeeCC
Q psy16913 1 MFLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQIGMKRLKVQLKRP 74 (81)
Q Consensus 1 lF~~~G~i~~v~i~~~~~~~~~kg~~~~~~~~~~~~~~~~fV~f~~~~~A~~Ai~~lng~~i~g~~i~V~~a~~ 74 (81)
+|++||+|..|.++.++.+|.++| ||||+|.+.++|..|++.|||..|.|+.|.|.++..
T Consensus 206 ~f~~~G~i~~v~~~~d~~~g~~~g--------------~afV~f~~~e~A~~A~~~l~g~~i~g~~i~v~~a~~ 265 (457)
T TIGR01622 206 IFEPFGDIEDVQLHRDPETGRSKG--------------FGFIQFHDAEEAKEALEVMNGFELAGRPIKVGYAQD 265 (457)
T ss_pred HHHhcCCeEEEEEEEcCCCCccce--------------EEEEEECCHHHHHHHHHhcCCcEECCEEEEEEEccC
Confidence 589999999999999998899999 999999999999999999999999999999999753
No 25
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.36 E-value=2.9e-12 Score=90.97 Aligned_cols=61 Identities=30% Similarity=0.467 Sum_probs=57.4
Q ss_pred CccCCceeeEEEEEecCCCCCcccccccccccccCcceEEEEEEcCHHHHHHHHHhhCCcEECCEEEEEEeeCCC
Q psy16913 1 MFLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQIGMKRLKVQLKRPK 75 (81)
Q Consensus 1 lF~~~G~i~~v~i~~~~~~~~~kg~~~~~~~~~~~~~~~~fV~f~~~~~A~~Ai~~lng~~i~g~~i~V~~a~~~ 75 (81)
+|+.||+|..+.++.++.+|.++| ||||+|.+.++|+.|++.|||..+.|+.|.|.+|...
T Consensus 315 ~f~~~G~i~~~~~~~~~~~g~~~g--------------~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a~~~ 375 (509)
T TIGR01642 315 LLESFGDLKAFNLIKDIATGLSKG--------------YAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRACVG 375 (509)
T ss_pred HHHhcCCeeEEEEEecCCCCCcCe--------------EEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECccC
Confidence 588999999999999998999999 9999999999999999999999999999999998543
No 26
>KOG0131|consensus
Probab=99.35 E-value=6.6e-13 Score=84.38 Aligned_cols=59 Identities=24% Similarity=0.426 Sum_probs=56.1
Q ss_pred CccCCceeeEEEEEecCCCCCcccccccccccccCcceEEEEEEcCHHHHHHHHHhhCCcEECCEEEEEEeeC
Q psy16913 1 MFLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQIGMKRLKVQLKR 73 (81)
Q Consensus 1 lF~~~G~i~~v~i~~~~~~~~~kg~~~~~~~~~~~~~~~~fV~f~~~~~A~~Ai~~lng~~i~g~~i~V~~a~ 73 (81)
||-+.|+|++++|++|+.+..++| |||++|.++++|+-||+.||+..+.||+|+|+.+.
T Consensus 29 L~iqagpVv~i~iPkDrv~~~~qG--------------ygF~Ef~~eedadYAikiln~VkLYgrpIrv~kas 87 (203)
T KOG0131|consen 29 LFIQAGPVVNLHIPKDRVTQKHQG--------------YGFAEFRTEEDADYAIKILNMVKLYGRPIRVNKAS 87 (203)
T ss_pred HHHhcCceeeeecchhhhcccccc--------------eeEEEEechhhhHHHHHHHHHHHhcCceeEEEecc
Confidence 467889999999999999999999 99999999999999999999999999999999886
No 27
>KOG0130|consensus
Probab=99.35 E-value=8.7e-13 Score=80.74 Aligned_cols=62 Identities=24% Similarity=0.377 Sum_probs=58.1
Q ss_pred CccCCceeeEEEEEecCCCCCcccccccccccccCcceEEEEEEcCHHHHHHHHHhhCCcEECCEEEEEEeeCCCC
Q psy16913 1 MFLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQIGMKRLKVQLKRPKD 76 (81)
Q Consensus 1 lF~~~G~i~~v~i~~~~~~~~~kg~~~~~~~~~~~~~~~~fV~f~~~~~A~~Ai~~lng~~i~g~~i~V~~a~~~~ 76 (81)
.|..||+|+.+++-.|+.||-.+| |++|+|+..++|+.|+..|||..|.|..|.|+|+..+.
T Consensus 92 ~F~dyGeiKNihLNLDRRtGy~KG--------------YaLvEYet~keAq~A~~~~Ng~~ll~q~v~VDw~Fv~g 153 (170)
T KOG0130|consen 92 KFADYGEIKNIHLNLDRRTGYVKG--------------YALVEYETLKEAQAAIDALNGAELLGQNVSVDWCFVKG 153 (170)
T ss_pred HHhhcccccceeeccccccccccc--------------eeeeehHhHHHHHHHHHhccchhhhCCceeEEEEEecC
Confidence 388999999999999999999999 99999999999999999999999999999999985443
No 28
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.34 E-value=7.8e-12 Score=67.58 Aligned_cols=53 Identities=30% Similarity=0.575 Sum_probs=49.0
Q ss_pred CccCCceeeEEEEEecCCCCCcccccccccccccCcceEEEEEEcCHHHHHHHHHhhCCcEECCEEEE
Q psy16913 1 MFLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQIGMKRLK 68 (81)
Q Consensus 1 lF~~~G~i~~v~i~~~~~~~~~kg~~~~~~~~~~~~~~~~fV~f~~~~~A~~Ai~~lng~~i~g~~i~ 68 (81)
+|+.||.|..+.++.++. +.+++ +|||+|.++++|.+|++.++|..++|+.|+
T Consensus 18 ~f~~~g~v~~v~~~~~~~-~~~~~--------------~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 18 FFSRFGPVEKVRLIKNKD-GQSRG--------------FAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp HCTTSSBEEEEEEEESTT-SSEEE--------------EEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred HHHhcCCcceEEEEeeec-cccCC--------------EEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 488999999999999986 88888 999999999999999999999999999875
No 29
>KOG0117|consensus
Probab=99.34 E-value=2.9e-12 Score=90.10 Aligned_cols=60 Identities=23% Similarity=0.451 Sum_probs=56.3
Q ss_pred CccCCceeeEEEEEecCCCCCcccccccccccccCcceEEEEEEcCHHHHHHHHHhhCCcEEC-CEEEEEEeeCC
Q psy16913 1 MFLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQIG-MKRLKVQLKRP 74 (81)
Q Consensus 1 lF~~~G~i~~v~i~~~~~~~~~kg~~~~~~~~~~~~~~~~fV~f~~~~~A~~Ai~~lng~~i~-g~~i~V~~a~~ 74 (81)
||++.|+|.+++|++|+.+|.+|| ||||+|.+.++|+.||+.||+++|. |+.|.|+.+..
T Consensus 103 lfEkiG~I~elRLMmD~~sG~nRG--------------YAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igvc~Sva 163 (506)
T KOG0117|consen 103 LFEKIGKIYELRLMMDPFSGDNRG--------------YAFVTFCTKEEAQEAIKELNNYEIRPGKLLGVCVSVA 163 (506)
T ss_pred HHHhccceeeEEEeecccCCCCcc--------------eEEEEeecHHHHHHHHHHhhCccccCCCEeEEEEeee
Confidence 689999999999999999999999 9999999999999999999999986 99999887644
No 30
>KOG0145|consensus
Probab=99.33 E-value=6.6e-12 Score=83.96 Aligned_cols=61 Identities=43% Similarity=0.682 Sum_probs=58.2
Q ss_pred CccCCceeeEEEEEecCCCCCcccccccccccccCcceEEEEEEcCHHHHHHHHHhhCCcEECCEEEEEEeeCCC
Q psy16913 1 MFLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQIGMKRLKVQLKRPK 75 (81)
Q Consensus 1 lF~~~G~i~~v~i~~~~~~~~~kg~~~~~~~~~~~~~~~~fV~f~~~~~A~~Ai~~lng~~i~g~~i~V~~a~~~ 75 (81)
||++||.|..|++++|..|.+.+| ||||++.+.++|.-||..|||+.+.+|.|.|.+...+
T Consensus 298 lFgpFGAv~nVKvirD~ttnkCKG--------------fgFVtMtNYdEAamAi~sLNGy~lg~rvLQVsFKtnk 358 (360)
T KOG0145|consen 298 LFGPFGAVTNVKVIRDFTTNKCKG--------------FGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNK 358 (360)
T ss_pred HhCcccceeeEEEEecCCcccccc--------------eeEEEecchHHHHHHHHHhcCccccceEEEEEEecCC
Confidence 699999999999999999999999 9999999999999999999999999999999987664
No 31
>KOG0121|consensus
Probab=99.33 E-value=1.7e-12 Score=78.73 Aligned_cols=60 Identities=17% Similarity=0.324 Sum_probs=56.8
Q ss_pred CccCCceeeEEEEEecCCCCCcccccccccccccCcceEEEEEEcCHHHHHHHHHhhCCcEECCEEEEEEeeCC
Q psy16913 1 MFLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQIGMKRLKVQLKRP 74 (81)
Q Consensus 1 lF~~~G~i~~v~i~~~~~~~~~kg~~~~~~~~~~~~~~~~fV~f~~~~~A~~Ai~~lng~~i~g~~i~V~~a~~ 74 (81)
||+++|+|..|-|-.|+.+..+.| ||||+|.+.++|..|+..++|+.++.++|+++|...
T Consensus 56 LFs~cG~irriiMGLdr~kktpCG--------------FCFVeyy~~~dA~~AlryisgtrLddr~ir~D~D~G 115 (153)
T KOG0121|consen 56 LFSKCGDIRRIIMGLDRFKKTPCG--------------FCFVEYYSRDDAEDALRYISGTRLDDRPIRIDWDAG 115 (153)
T ss_pred HHHhccchheeEeccccCCcCccc--------------eEEEEEecchhHHHHHHHhccCcccccceeeecccc
Confidence 699999999999999999999999 999999999999999999999999999999998743
No 32
>KOG0108|consensus
Probab=99.31 E-value=2.8e-12 Score=90.71 Aligned_cols=63 Identities=30% Similarity=0.560 Sum_probs=59.5
Q ss_pred CccCCceeeEEEEEecCCCCCcccccccccccccCcceEEEEEEcCHHHHHHHHHhhCCcEECCEEEEEEeeCCCCC
Q psy16913 1 MFLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQIGMKRLKVQLKRPKDA 77 (81)
Q Consensus 1 lF~~~G~i~~v~i~~~~~~~~~kg~~~~~~~~~~~~~~~~fV~f~~~~~A~~Ai~~lng~~i~g~~i~V~~a~~~~~ 77 (81)
+|+..|+|.+++++.|+.||+++| |||++|.++++|..|++.|||.++.|++|+|+|+...+.
T Consensus 38 ~~~~~g~v~s~~~v~D~~tG~~~G--------------~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~~~ 100 (435)
T KOG0108|consen 38 IFSGVGPVLSFRLVYDRETGKPKG--------------FGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNRKN 100 (435)
T ss_pred HHhccCccceeeecccccCCCcCc--------------eeeEecCchhhHHHHHHhcCCcccCCceEEeecccccch
Confidence 478899999999999999999999 999999999999999999999999999999999976554
No 33
>KOG0124|consensus
Probab=99.31 E-value=2.4e-12 Score=89.33 Aligned_cols=59 Identities=36% Similarity=0.566 Sum_probs=55.8
Q ss_pred ccCCceeeEEEEEecCCCCCcccccccccccccCcceEEEEEEcCHHHHHHHHHhhCCcEECCEEEEEEeeCC
Q psy16913 2 FLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQIGMKRLKVQLKRP 74 (81)
Q Consensus 2 F~~~G~i~~v~i~~~~~~~~~kg~~~~~~~~~~~~~~~~fV~f~~~~~A~~Ai~~lng~~i~g~~i~V~~a~~ 74 (81)
|..||+|+++.|-.|+.|++++| |+||+|+-+|.|+-|++.|||.++.||.|+|....+
T Consensus 134 F~PFGPIKSInMSWDp~T~kHKg--------------FAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgrPsN 192 (544)
T KOG0124|consen 134 FDPFGPIKSINMSWDPATGKHKG--------------FAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPSN 192 (544)
T ss_pred ccCCCCcceeecccccccccccc--------------eEEEEEeCcHHHHHHHHHhccccccCccccccCCCC
Confidence 78999999999999999999999 999999999999999999999999999999985543
No 34
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.30 E-value=1.1e-11 Score=88.46 Aligned_cols=56 Identities=25% Similarity=0.415 Sum_probs=51.7
Q ss_pred CccCCceeeEEEEEecCCCCCcccccccccccccCcceEEEEEEcCHHHHHHHHHhhCCcEECCEEEEEEeeCCC
Q psy16913 1 MFLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQIGMKRLKVQLKRPK 75 (81)
Q Consensus 1 lF~~~G~i~~v~i~~~~~~~~~kg~~~~~~~~~~~~~~~~fV~f~~~~~A~~Ai~~lng~~i~g~~i~V~~a~~~ 75 (81)
||+.||.|.+|+++.++ +| ||||+|.+.++|+.|+..|||..|.|++|+|.+++.+
T Consensus 296 lF~~yG~V~~vki~~~~-----~g--------------~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~~s~~~ 351 (481)
T TIGR01649 296 LFCVYGNVERVKFMKNK-----KE--------------TALIEMADPYQAQLALTHLNGVKLFGKPLRVCPSKQQ 351 (481)
T ss_pred HHHhcCCeEEEEEEeCC-----CC--------------EEEEEECCHHHHHHHHHHhCCCEECCceEEEEEcccc
Confidence 68999999999999874 57 9999999999999999999999999999999998653
No 35
>smart00362 RRM_2 RNA recognition motif.
Probab=99.29 E-value=1.7e-11 Score=64.72 Aligned_cols=54 Identities=39% Similarity=0.653 Sum_probs=48.5
Q ss_pred CccCCceeeEEEEEecCCCCCcccccccccccccCcceEEEEEEcCHHHHHHHHHhhCCcEECCEEEEEE
Q psy16913 1 MFLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQIGMKRLKVQ 70 (81)
Q Consensus 1 lF~~~G~i~~v~i~~~~~~~~~kg~~~~~~~~~~~~~~~~fV~f~~~~~A~~Ai~~lng~~i~g~~i~V~ 70 (81)
+|++||+|..+.+..++ +.++| +|||+|.+.++|+.|++.++|..+.|+.|.|+
T Consensus 19 ~~~~~g~v~~~~~~~~~--~~~~~--------------~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 19 LFSKFGPIESVKIPKDT--GKSKG--------------FAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred HHHhcCCEEEEEEecCC--CCCCc--------------eEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 47889999999988876 66777 99999999999999999999999999998874
No 36
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.29 E-value=1.1e-11 Score=87.19 Aligned_cols=59 Identities=24% Similarity=0.334 Sum_probs=55.3
Q ss_pred CccCCceeeEEEEEecCCCCCcccccccccccccCcceEEEEEEcCHHHHHHHHHhhCCcEECCEEEEEEeeCC
Q psy16913 1 MFLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQIGMKRLKVQLKRP 74 (81)
Q Consensus 1 lF~~~G~i~~v~i~~~~~~~~~kg~~~~~~~~~~~~~~~~fV~f~~~~~A~~Ai~~lng~~i~g~~i~V~~a~~ 74 (81)
+|++||+|.+|.|+.|+.++.++| ||||+|.+.++|.+|+. |+|..+.|++|.|+++..
T Consensus 109 ~F~~~G~v~~v~i~~d~~~~~skg--------------~afVeF~~~e~A~~Al~-l~g~~~~g~~i~v~~~~~ 167 (457)
T TIGR01622 109 FFSKVGKVRDVQCIKDRNSRRSKG--------------VAYVEFYDVESVIKALA-LTGQMLLGRPIIVQSSQA 167 (457)
T ss_pred HHHhcCCeeEEEEeecCCCCCcce--------------EEEEEECCHHHHHHHHH-hCCCEECCeeeEEeecch
Confidence 589999999999999999999999 99999999999999997 999999999999998654
No 37
>KOG0107|consensus
Probab=99.28 E-value=5.4e-12 Score=79.83 Aligned_cols=57 Identities=28% Similarity=0.477 Sum_probs=51.3
Q ss_pred CccCCceeeEEEEEecCCCCCcccccccccccccCcceEEEEEEcCHHHHHHHHHhhCCcEECCEEEEEEeeCCCC
Q psy16913 1 MFLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQIGMKRLKVQLKRPKD 76 (81)
Q Consensus 1 lF~~~G~i~~v~i~~~~~~~~~kg~~~~~~~~~~~~~~~~fV~f~~~~~A~~Ai~~lng~~i~g~~i~V~~a~~~~ 76 (81)
+|..||+|.+|.|-..+ .| ||||+|+++.||+.|+..|||..|.|..|+|+++..+.
T Consensus 30 ~F~~yG~lrsvWvArnP-----PG--------------fAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~G~~ 86 (195)
T KOG0107|consen 30 AFSKYGPLRSVWVARNP-----PG--------------FAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELSTGRP 86 (195)
T ss_pred HHHhcCcceeEEEeecC-----CC--------------ceEEeccCcccHHHHHhhcCCccccCceEEEEeecCCc
Confidence 48899999999888765 67 99999999999999999999999999999999986543
No 38
>KOG0127|consensus
Probab=99.27 E-value=8.4e-12 Score=89.70 Aligned_cols=62 Identities=26% Similarity=0.404 Sum_probs=56.8
Q ss_pred CccCCceeeEEEEEecCCCCCcccccccccccccCcceEEEEEEcCHHHHHHHHHhhCCcEECCEEEEEEeeCCCCC
Q psy16913 1 MFLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQIGMKRLKVQLKRPKDA 77 (81)
Q Consensus 1 lF~~~G~i~~v~i~~~~~~~~~kg~~~~~~~~~~~~~~~~fV~f~~~~~A~~Ai~~lng~~i~g~~i~V~~a~~~~~ 77 (81)
+|+.||.|.+|.|++.+ .|.-+| ||||.|....+|..|++.+||.+|+||+|-|+||.+++.
T Consensus 137 vFs~~G~V~Ei~IP~k~-dgklcG--------------FaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV~Kd~ 198 (678)
T KOG0127|consen 137 VFSNFGKVVEIVIPRKK-DGKLCG--------------FAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDWAVDKDT 198 (678)
T ss_pred HHhhcceEEEEEcccCC-CCCccc--------------eEEEEEeeHHHHHHHHHhccCceecCceeEEeeeccccc
Confidence 58999999999999776 555569 999999999999999999999999999999999998864
No 39
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.26 E-value=1.8e-11 Score=81.59 Aligned_cols=56 Identities=18% Similarity=0.311 Sum_probs=50.8
Q ss_pred CccCCceeeEEEEEecCCCCCcccccccccccccCcceEEEEEEcCHHHHHHHHHhhCCcEECCEEEEEEeeCC
Q psy16913 1 MFLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQIGMKRLKVQLKRP 74 (81)
Q Consensus 1 lF~~~G~i~~v~i~~~~~~~~~kg~~~~~~~~~~~~~~~~fV~f~~~~~A~~Ai~~lng~~i~g~~i~V~~a~~ 74 (81)
+|+.||+|.++.|+.++. ++| ||||+|.++++|+.|+. |||..|.|+.|.|.++..
T Consensus 24 fFS~~G~I~~V~I~~d~~---~~G--------------fAFVtF~d~eaAe~All-LnG~~l~gr~V~Vt~a~~ 79 (260)
T PLN03120 24 FFSFSGDIEYVEMQSENE---RSQ--------------IAYVTFKDPQGAETALL-LSGATIVDQSVTITPAED 79 (260)
T ss_pred HHHhcCCeEEEEEeecCC---CCC--------------EEEEEeCcHHHHHHHHH-hcCCeeCCceEEEEeccC
Confidence 589999999999998863 467 99999999999999996 999999999999999863
No 40
>PLN03213 repressor of silencing 3; Provisional
Probab=99.26 E-value=1.1e-11 Score=88.72 Aligned_cols=57 Identities=21% Similarity=0.430 Sum_probs=51.6
Q ss_pred CccCCceeeEEEEEecCCCCCcccccccccccccCcceEEEEEEcCH--HHHHHHHHhhCCcEECCEEEEEEeeCCC
Q psy16913 1 MFLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNP--ASAHTAIQAMNGFQIGMKRLKVQLKRPK 75 (81)
Q Consensus 1 lF~~~G~i~~v~i~~~~~~~~~kg~~~~~~~~~~~~~~~~fV~f~~~--~~A~~Ai~~lng~~i~g~~i~V~~a~~~ 75 (81)
+|+.||.|.+|.|+ +.+| || ||||+|... .++.+||..|||..+.|+.|+|+.|++.
T Consensus 30 vFSeFGsVkdVEIp--RETG--RG--------------FAFVEMssdddaEeeKAISaLNGAEWKGR~LKVNKAKP~ 88 (759)
T PLN03213 30 IFSPMGTVDAVEFV--RTKG--RS--------------FAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLEKAKEH 88 (759)
T ss_pred HHHhcCCeeEEEEe--cccC--Cc--------------eEEEEecCCcHHHHHHHHHHhcCCeecCceeEEeeccHH
Confidence 48999999999999 4466 88 999999988 6899999999999999999999999764
No 41
>KOG4208|consensus
Probab=99.26 E-value=1.6e-11 Score=79.18 Aligned_cols=60 Identities=27% Similarity=0.463 Sum_probs=54.7
Q ss_pred ccCC-ceeeEEEEEecCCCCCcccccccccccccCcceEEEEEEcCHHHHHHHHHhhCCcEECCEEEEEEeeCCC
Q psy16913 2 FLPF-GNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQIGMKRLKVQLKRPK 75 (81)
Q Consensus 2 F~~~-G~i~~v~i~~~~~~~~~kg~~~~~~~~~~~~~~~~fV~f~~~~~A~~Ai~~lng~~i~g~~i~V~~a~~~ 75 (81)
|.+| |.+...++-+++.||.|+| ||||+|++++.|.-|.+.||++.+.|+.|.+.+-.|.
T Consensus 70 ~~q~~g~v~r~rlsRnkrTGNSKg--------------YAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~vmppe 130 (214)
T KOG4208|consen 70 FRQFGGTVTRFRLSRNKRTGNSKG--------------YAFVEFESEEVAKIAAETMNNYLLMEHLLECHVMPPE 130 (214)
T ss_pred hhhcCCeeEEEEeecccccCCcCc--------------eEEEEeccHHHHHHHHHHhhhhhhhhheeeeEEeCch
Confidence 4555 8899999999999999999 9999999999999999999999999999999876654
No 42
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.25 E-value=2.1e-11 Score=77.91 Aligned_cols=59 Identities=36% Similarity=0.588 Sum_probs=56.3
Q ss_pred CccCCceeeEEEEEecCCCCCcccccccccccccCcceEEEEEEcCHHHHHHHHHhhCCcEECCEEEEEEeeC
Q psy16913 1 MFLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQIGMKRLKVQLKR 73 (81)
Q Consensus 1 lF~~~G~i~~v~i~~~~~~~~~kg~~~~~~~~~~~~~~~~fV~f~~~~~A~~Ai~~lng~~i~g~~i~V~~a~ 73 (81)
+|.+||+|..+.+..++.++.++| ||||+|.++++|..|+..++|..+.|+.|.|.++.
T Consensus 135 ~F~~~g~~~~~~~~~d~~~~~~~g--------------~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~ 193 (306)
T COG0724 135 LFKKFGPVKRVRLVRDRETGKSRG--------------FAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQ 193 (306)
T ss_pred HHHhcCceeEEEeeeccccCccCc--------------eEEEEecCHHHHHHHHHHcCCCeECCceeEeeccc
Confidence 488999999999999998999999 99999999999999999999999999999999965
No 43
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.21 E-value=2.2e-11 Score=88.69 Aligned_cols=58 Identities=22% Similarity=0.438 Sum_probs=52.9
Q ss_pred CccCCceeeEEEEEecCCCCCcccccccccccccCcceEEEEEEcCHHHHHHHHHhhCCcEEC-CEEEEEEeeC
Q psy16913 1 MFLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQIG-MKRLKVQLKR 73 (81)
Q Consensus 1 lF~~~G~i~~v~i~~~~~~~~~kg~~~~~~~~~~~~~~~~fV~f~~~~~A~~Ai~~lng~~i~-g~~i~V~~a~ 73 (81)
+|++||+|.+++|++| .+++++| ||||+|.+.++|++||+.||+..+. |+.|.|.++.
T Consensus 78 ~F~~~G~I~~vrl~~D-~sG~sRG--------------faFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V~~S~ 136 (578)
T TIGR01648 78 LFEKAGPIYELRLMMD-FSGQNRG--------------YAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGVCISV 136 (578)
T ss_pred HHHhhCCEEEEEEEEC-CCCCccc--------------eEEEEeCCHHHHHHHHHHcCCCeecCCccccccccc
Confidence 5899999999999999 6999999 9999999999999999999999985 7888777664
No 44
>KOG0117|consensus
Probab=99.21 E-value=1.9e-11 Score=86.06 Aligned_cols=56 Identities=30% Similarity=0.479 Sum_probs=52.1
Q ss_pred CccCCceeeEEEEEecCCCCCcccccccccccccCcceEEEEEEcCHHHHHHHHHhhCCcEECCEEEEEEeeCCCCCC
Q psy16913 1 MFLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQIGMKRLKVQLKRPKDAA 78 (81)
Q Consensus 1 lF~~~G~i~~v~i~~~~~~~~~kg~~~~~~~~~~~~~~~~fV~f~~~~~A~~Ai~~lng~~i~g~~i~V~~a~~~~~~ 78 (81)
+|++||.|.+|+.++| ||||+|.+.++|.+|++.|||+.|+|..|.|.+|+|.++.
T Consensus 279 ~F~~~G~veRVkk~rD----------------------YaFVHf~eR~davkAm~~~ngkeldG~~iEvtLAKP~~k~ 334 (506)
T KOG0117|consen 279 LFNEFGKVERVKKPRD----------------------YAFVHFAEREDAVKAMKETNGKELDGSPIEVTLAKPVDKK 334 (506)
T ss_pred HHHhccceEEeecccc----------------------eeEEeecchHHHHHHHHHhcCceecCceEEEEecCChhhh
Confidence 5899999999998866 9999999999999999999999999999999999997654
No 45
>KOG0144|consensus
Probab=99.21 E-value=1.7e-11 Score=86.05 Aligned_cols=67 Identities=66% Similarity=1.047 Sum_probs=62.9
Q ss_pred CccCCceeeEEEEEecCCCCCcccccccccccccCcceEEEEEEcCHHHHHHHHHhhCCcEECCEEEEEEeeCCCCCCCC
Q psy16913 1 MFLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQIGMKRLKVQLKRPKDAARP 80 (81)
Q Consensus 1 lF~~~G~i~~v~i~~~~~~~~~kg~~~~~~~~~~~~~~~~fV~f~~~~~A~~Ai~~lng~~i~g~~i~V~~a~~~~~~~~ 80 (81)
+|..||.|.++++..|+.|+-+++ |+||+|++..+|..||..|||..|.+++++|++.+.+....|
T Consensus 444 ~f~pfG~Vlsakvfidk~tnlskc--------------fgfvSyen~~sa~~aI~amngfQig~KrlkVQlk~~~~np~~ 509 (510)
T KOG0144|consen 444 TFQPFGGVLSAKVFIDKVTNLSKC--------------FGFVSYENAQSAQNAISAMNGFQIGSKRLKVQLKRDRNNPYP 509 (510)
T ss_pred HhccccceeEEEEEEecccCHhhh--------------cCcccccchhhhHHHHHHhcchhhccccceEEeeeccCCCCC
Confidence 478999999999999999999999 999999999999999999999999999999999988887666
Q ss_pred C
Q psy16913 81 Y 81 (81)
Q Consensus 81 ~ 81 (81)
|
T Consensus 510 ~ 510 (510)
T KOG0144|consen 510 R 510 (510)
T ss_pred C
Confidence 4
No 46
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.20 E-value=5.3e-11 Score=84.57 Aligned_cols=60 Identities=17% Similarity=0.232 Sum_probs=51.8
Q ss_pred CccCCceeeEEEEEecCC---CCCcccccccccccccCcceEEEEEEcCHHHHHHHHHhhCCcEECCEEEEEEeeCC
Q psy16913 1 MFLPFGNVISSKVFIDRA---TNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQIGMKRLKVQLKRP 74 (81)
Q Consensus 1 lF~~~G~i~~v~i~~~~~---~~~~kg~~~~~~~~~~~~~~~~fV~f~~~~~A~~Ai~~lng~~i~g~~i~V~~a~~ 74 (81)
+|++||.|.+|.|+++.. ++...| ++||+|.+.++|++|+..|||..+.|+.|.|.|...
T Consensus 439 ~f~~~G~v~~v~i~~~~~~~~~~~~~G--------------~~fV~F~~~e~A~~A~~~lnGr~~~gr~v~~~~~~~ 501 (509)
T TIGR01642 439 EFSKYGPLINIVIPRPNGDRNSTPGVG--------------KVFLEYADVRSAEKAMEGMNGRKFNDRVVVAAFYGE 501 (509)
T ss_pred HHHhcCCeeEEEeeccCcCCCcCCCcc--------------eEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEeCH
Confidence 378999999999987632 234456 999999999999999999999999999999998754
No 47
>KOG0415|consensus
Probab=99.20 E-value=1.9e-11 Score=84.46 Aligned_cols=60 Identities=30% Similarity=0.552 Sum_probs=57.6
Q ss_pred CccCCceeeEEEEEecCCCCCcccccccccccccCcceEEEEEEcCHHHHHHHHHhhCCcEECCEEEEEEeeCC
Q psy16913 1 MFLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQIGMKRLKVQLKRP 74 (81)
Q Consensus 1 lF~~~G~i~~v~i~~~~~~~~~kg~~~~~~~~~~~~~~~~fV~f~~~~~A~~Ai~~lng~~i~g~~i~V~~a~~ 74 (81)
||+.||+|.+|.||+|+.||.+-. ||||+|++.+++++|.-.|+...|+.++|.|.++++
T Consensus 259 IFSrFG~i~sceVIRD~ktgdsLq--------------yaFiEFen~escE~AyFKMdNvLIDDrRIHVDFSQS 318 (479)
T KOG0415|consen 259 IFSRFGKIVSCEVIRDRKTGDSLQ--------------YAFIEFENKESCEQAYFKMDNVLIDDRRIHVDFSQS 318 (479)
T ss_pred HHhhcccceeeeEEecccccchhh--------------eeeeeecchhhHHHHHhhhcceeeccceEEeehhhh
Confidence 699999999999999999999998 999999999999999999999999999999999854
No 48
>KOG0144|consensus
Probab=99.19 E-value=1.7e-11 Score=86.09 Aligned_cols=63 Identities=27% Similarity=0.415 Sum_probs=57.3
Q ss_pred CccCCceeeEEEEEecCCCCCcccccccccccccCcceEEEEEEcCHHHHHHHHHhhCCcE-ECC--EEEEEEeeCCCCC
Q psy16913 1 MFLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQ-IGM--KRLKVQLKRPKDA 77 (81)
Q Consensus 1 lF~~~G~i~~v~i~~~~~~~~~kg~~~~~~~~~~~~~~~~fV~f~~~~~A~~Ai~~lng~~-i~g--~~i~V~~a~~~~~ 77 (81)
||++||.|.+|.|++|. .+.+|| ||||+|...+.|..||+.|||.. +.| .+|.|+||.++++
T Consensus 144 iFs~fG~Ied~~ilrd~-~~~sRG--------------caFV~fstke~A~~Aika~ng~~tmeGcs~PLVVkFADtqkd 208 (510)
T KOG0144|consen 144 IFSRFGHIEDCYILRDP-DGLSRG--------------CAFVKFSTKEMAVAAIKALNGTQTMEGCSQPLVVKFADTQKD 208 (510)
T ss_pred HHHhhCccchhhheecc-cccccc--------------eeEEEEehHHHHHHHHHhhccceeeccCCCceEEEecccCCC
Confidence 69999999999999997 789999 99999999999999999999976 555 7999999998876
Q ss_pred C
Q psy16913 78 A 78 (81)
Q Consensus 78 ~ 78 (81)
+
T Consensus 209 k 209 (510)
T KOG0144|consen 209 K 209 (510)
T ss_pred c
Confidence 5
No 49
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.18 E-value=7.3e-11 Score=86.02 Aligned_cols=55 Identities=29% Similarity=0.528 Sum_probs=49.6
Q ss_pred CccCC--ceeeEEEEEecCCCCCcccccccccccccCcceEEEEEEcCHHHHHHHHHhhCCcEECCEEEEEEeeCCCCC
Q psy16913 1 MFLPF--GNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQIGMKRLKVQLKRPKDA 77 (81)
Q Consensus 1 lF~~~--G~i~~v~i~~~~~~~~~kg~~~~~~~~~~~~~~~~fV~f~~~~~A~~Ai~~lng~~i~g~~i~V~~a~~~~~ 77 (81)
+|++| |+|.+|+++ ++ ||||+|.+.++|++|++.|||..|+|+.|+|+|++|+..
T Consensus 253 ~F~~f~~G~I~rV~~~--------rg--------------fAFVeF~s~e~A~kAi~~lnG~~i~Gr~I~V~~Akp~~~ 309 (578)
T TIGR01648 253 SFSEFKPGKVERVKKI--------RD--------------YAFVHFEDREDAVKAMDELNGKELEGSEIEVTLAKPVDK 309 (578)
T ss_pred HHHhcCCCceEEEEee--------cC--------------eEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEccCCCc
Confidence 48899 999998765 34 999999999999999999999999999999999988643
No 50
>KOG0148|consensus
Probab=99.17 E-value=1.3e-10 Score=77.85 Aligned_cols=57 Identities=32% Similarity=0.559 Sum_probs=52.5
Q ss_pred CccCCceeeEEEEEecCCCCCcccccccccccccCcceEEEEEEcCHHHHHHHHHhhCCcEECCEEEEEEeeCCCCC
Q psy16913 1 MFLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQIGMKRLKVQLKRPKDA 77 (81)
Q Consensus 1 lF~~~G~i~~v~i~~~~~~~~~kg~~~~~~~~~~~~~~~~fV~f~~~~~A~~Ai~~lng~~i~g~~i~V~~a~~~~~ 77 (81)
.|++||+|.+|++..++ | |+||.|++.|.|.+||..||+.+|.|..+++.|-+....
T Consensus 184 ~Fs~fG~I~EVRvFk~q------G--------------YaFVrF~tkEaAahAIv~mNntei~G~~VkCsWGKe~~~ 240 (321)
T KOG0148|consen 184 TFSPFGPIQEVRVFKDQ------G--------------YAFVRFETKEAAAHAIVQMNNTEIGGQLVRCSWGKEGDD 240 (321)
T ss_pred hcccCCcceEEEEeccc------c--------------eEEEEecchhhHHHHHHHhcCceeCceEEEEeccccCCC
Confidence 48999999999999885 6 999999999999999999999999999999999876543
No 51
>KOG0123|consensus
Probab=99.16 E-value=6.1e-11 Score=82.62 Aligned_cols=61 Identities=38% Similarity=0.594 Sum_probs=55.4
Q ss_pred CccCCceeeEEEEEecCCCCCcccccccccccccCcceEEEEEEcCHHHHHHHHHhhCCcEECCEEEEEEeeCCCCCC
Q psy16913 1 MFLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQIGMKRLKVQLKRPKDAA 78 (81)
Q Consensus 1 lF~~~G~i~~v~i~~~~~~~~~kg~~~~~~~~~~~~~~~~fV~f~~~~~A~~Ai~~lng~~i~g~~i~V~~a~~~~~~ 78 (81)
+|+.||+|++|++.++. .| ++| | ||+|+++++|++||+.+||..+.|+.|.|....++..+
T Consensus 96 ~f~~~g~ilS~kv~~~~-~g-~kg--------------~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~~~~~er 156 (369)
T KOG0123|consen 96 TFSEFGNILSCKVATDE-NG-SKG--------------Y-FVQFESEESAKKAIEKLNGMLLNGKKIYVGLFERKEER 156 (369)
T ss_pred HHHhhcCeeEEEEEEcC-CC-cee--------------e-EEEeCCHHHHHHHHHHhcCcccCCCeeEEeeccchhhh
Confidence 48999999999999997 44 788 9 99999999999999999999999999999998776654
No 52
>KOG0147|consensus
Probab=99.15 E-value=8.4e-11 Score=84.21 Aligned_cols=61 Identities=33% Similarity=0.640 Sum_probs=57.0
Q ss_pred CccCCceeeEEEEEecCCCCCcccccccccccccCcceEEEEEEcCHHHHHHHHHhhCCcEECCEEEEEEeeCCC
Q psy16913 1 MFLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQIGMKRLKVQLKRPK 75 (81)
Q Consensus 1 lF~~~G~i~~v~i~~~~~~~~~kg~~~~~~~~~~~~~~~~fV~f~~~~~A~~Ai~~lng~~i~g~~i~V~~a~~~ 75 (81)
+|+.||+|..|.+++|..||.++| |||++|.+.++|.+|+..|||..|-|+.|+|..-..+
T Consensus 298 ifepfg~Ie~v~l~~d~~tG~skg--------------fGfi~f~~~~~ar~a~e~lngfelAGr~ikV~~v~~r 358 (549)
T KOG0147|consen 298 IFEPFGKIENVQLTKDSETGRSKG--------------FGFITFVNKEDARKALEQLNGFELAGRLIKVSVVTER 358 (549)
T ss_pred hccCcccceeeeeccccccccccC--------------cceEEEecHHHHHHHHHHhccceecCceEEEEEeeee
Confidence 699999999999999999999999 9999999999999999999999999999998876443
No 53
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.14 E-value=3.2e-10 Score=60.06 Aligned_cols=56 Identities=38% Similarity=0.695 Sum_probs=49.5
Q ss_pred CccCCceeeEEEEEecCCCCCcccccccccccccCcceEEEEEEcCHHHHHHHHHhhCCcEECCEEEEEEe
Q psy16913 1 MFLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQIGMKRLKVQL 71 (81)
Q Consensus 1 lF~~~G~i~~v~i~~~~~~~~~kg~~~~~~~~~~~~~~~~fV~f~~~~~A~~Ai~~lng~~i~g~~i~V~~ 71 (81)
+|+.+|+|..+.+..++.+ .++| +|||+|.+.++|..|++.+++..+.|+.+.|.+
T Consensus 19 ~~~~~g~i~~~~~~~~~~~-~~~~--------------~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 19 LFSKFGKVESVRIVRDKDT-KSKG--------------FAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred HHHhcCCEEEEEEeeCCCC-Ccce--------------EEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 3678899999999988744 6667 999999999999999999999999999999864
No 54
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.12 E-value=2.2e-10 Score=81.75 Aligned_cols=57 Identities=30% Similarity=0.481 Sum_probs=49.8
Q ss_pred CccCCceeeEEEEEecCCCCCcccccccccccccCcceEEEEEEcCHHHHHHHHHhhCCcEECC--EEEEEEeeCCC
Q psy16913 1 MFLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQIGM--KRLKVQLKRPK 75 (81)
Q Consensus 1 lF~~~G~i~~v~i~~~~~~~~~kg~~~~~~~~~~~~~~~~fV~f~~~~~A~~Ai~~lng~~i~g--~~i~V~~a~~~ 75 (81)
+|+.||+|.+|.|++++. ++ +|||+|.+.++|.+|++.|||..|.| ..|+|+|+++.
T Consensus 116 ~F~~~G~V~~v~i~~~~~----~~--------------~afVef~~~~~A~~A~~~Lng~~i~~~~~~l~v~~sk~~ 174 (481)
T TIGR01649 116 IFNPYGKVLRIVTFTKNN----VF--------------QALVEFESVNSAQHAKAALNGADIYNGCCTLKIEYAKPT 174 (481)
T ss_pred HHhccCCEEEEEEEecCC----ce--------------EEEEEECCHHHHHHHHHHhcCCcccCCceEEEEEEecCC
Confidence 589999999999887642 36 99999999999999999999999975 58999998764
No 55
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.09 E-value=3.3e-10 Score=74.87 Aligned_cols=54 Identities=19% Similarity=0.338 Sum_probs=48.3
Q ss_pred CccCCceeeEEEEEecCCCCCcccccccccccccCcceEEEEEEcCHHHHHHHHHhhCCcEECCEEEEEEee
Q psy16913 1 MFLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQIGMKRLKVQLK 72 (81)
Q Consensus 1 lF~~~G~i~~v~i~~~~~~~~~kg~~~~~~~~~~~~~~~~fV~f~~~~~A~~Ai~~lng~~i~g~~i~V~~a 72 (81)
+|+.||+|.+|+|++|. ..++ ||||+|.++++|+.|+. |||..|.+++|.|..+
T Consensus 25 fFS~~G~I~~V~I~~D~---et~g--------------fAfVtF~d~~aaetAll-LnGa~l~d~~I~It~~ 78 (243)
T PLN03121 25 FFSHCGAIEHVEIIRSG---EYAC--------------TAYVTFKDAYALETAVL-LSGATIVDQRVCITRW 78 (243)
T ss_pred HHHhcCCeEEEEEecCC---Ccce--------------EEEEEECCHHHHHHHHh-cCCCeeCCceEEEEeC
Confidence 59999999999999884 4456 99999999999999995 9999999999998874
No 56
>KOG0123|consensus
Probab=99.08 E-value=3e-10 Score=79.14 Aligned_cols=59 Identities=31% Similarity=0.435 Sum_probs=55.1
Q ss_pred CccCCceeeEEEEEecCCCCCcccccccccccccCcceEEEEEEcCHHHHHHHHHhhCCcEECCEEEEEEeeCCCC
Q psy16913 1 MFLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQIGMKRLKVQLKRPKD 76 (81)
Q Consensus 1 lF~~~G~i~~v~i~~~~~~~~~kg~~~~~~~~~~~~~~~~fV~f~~~~~A~~Ai~~lng~~i~g~~i~V~~a~~~~ 76 (81)
+|+.+|++.++++.+|- | +-| ||||.|.++.+|.+|++.||...+.|++|++.|+....
T Consensus 18 ~f~~~~~v~s~rvc~d~-t--slg--------------y~yvnf~~~~da~~A~~~~n~~~~~~~~~rim~s~rd~ 76 (369)
T KOG0123|consen 18 KFSPAGPVLSIRVCRDA-T--SLG--------------YAYVNFQQPADAERALDTMNFDVLKGKPIRIMWSQRDP 76 (369)
T ss_pred HhcccCCceeEEEeecC-C--ccc--------------eEEEecCCHHHHHHHHHHcCCcccCCcEEEeehhccCC
Confidence 58999999999999998 6 888 99999999999999999999999999999999987653
No 57
>KOG0114|consensus
Probab=99.04 E-value=6.6e-10 Score=65.43 Aligned_cols=59 Identities=19% Similarity=0.406 Sum_probs=52.4
Q ss_pred CccCCceeeEEEEEecCCCCCcccccccccccccCcceEEEEEEcCHHHHHHHHHhhCCcEECCEEEEEEeeCCCC
Q psy16913 1 MFLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQIGMKRLKVQLKRPKD 76 (81)
Q Consensus 1 lF~~~G~i~~v~i~~~~~~~~~kg~~~~~~~~~~~~~~~~fV~f~~~~~A~~Ai~~lng~~i~g~~i~V~~a~~~~ 76 (81)
||++||+|..++|-..+. .+| -|||.|++..+|.+|+..|+|+-+.++.+.|-+-++.+
T Consensus 38 lFGkyg~IrQIRiG~~k~---TrG--------------TAFVVYedi~dAk~A~dhlsg~n~~~ryl~vlyyq~~~ 96 (124)
T KOG0114|consen 38 LFGKYGTIRQIRIGNTKE---TRG--------------TAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLYYQPED 96 (124)
T ss_pred HhhcccceEEEEecCccC---cCc--------------eEEEEehHhhhHHHHHHHhcccccCCceEEEEecCHHH
Confidence 699999999999876653 477 99999999999999999999999999999998876643
No 58
>KOG4206|consensus
Probab=99.02 E-value=3.2e-10 Score=73.85 Aligned_cols=60 Identities=25% Similarity=0.502 Sum_probs=53.9
Q ss_pred CccCCceeeEEEEEecCCCCCcccccccccccccCcceEEEEEEcCHHHHHHHHHhhCCcEECCEEEEEEeeCCCCC
Q psy16913 1 MFLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQIGMKRLKVQLKRPKDA 77 (81)
Q Consensus 1 lF~~~G~i~~v~i~~~~~~~~~kg~~~~~~~~~~~~~~~~fV~f~~~~~A~~Ai~~lng~~i~g~~i~V~~a~~~~~ 77 (81)
||++||.|..|.... |.+.+| -|||.|.+.+.|..|+..|+|..+.|+++++++|+.+.+
T Consensus 33 LFsqfG~ildI~a~k---t~KmRG--------------QA~VvFk~~~~As~A~r~l~gfpFygK~mriqyA~s~sd 92 (221)
T KOG4206|consen 33 LFSQFGKILDISAFK---TPKMRG--------------QAFVVFKETEAASAALRALQGFPFYGKPMRIQYAKSDSD 92 (221)
T ss_pred HHHhhCCeEEEEecC---CCCccC--------------ceEEEecChhHHHHHHHHhcCCcccCchhheecccCccc
Confidence 699999999987664 567788 999999999999999999999999999999999987653
No 59
>KOG0109|consensus
Probab=99.02 E-value=3.7e-10 Score=76.32 Aligned_cols=55 Identities=22% Similarity=0.577 Sum_probs=51.5
Q ss_pred CccCCceeeEEEEEecCCCCCcccccccccccccCcceEEEEEEcCHHHHHHHHHhhCCcEECCEEEEEEeeCCCCC
Q psy16913 1 MFLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQIGMKRLKVQLKRPKDA 77 (81)
Q Consensus 1 lF~~~G~i~~v~i~~~~~~~~~kg~~~~~~~~~~~~~~~~fV~f~~~~~A~~Ai~~lng~~i~g~~i~V~~a~~~~~ 77 (81)
||++||+|.+|.|+++ ||||..++...|..||..|+|+.|+|..|+|+-+++|..
T Consensus 22 lFe~ygkVlECDIvKN----------------------YgFVHiEdktaaedairNLhgYtLhg~nInVeaSksKsk 76 (346)
T KOG0109|consen 22 LFEQYGKVLECDIVKN----------------------YGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSKSK 76 (346)
T ss_pred HHHhhCceEeeeeecc----------------------cceEEeecccccHHHHhhcccceecceEEEEEeccccCC
Confidence 6999999999999976 999999999999999999999999999999999988743
No 60
>KOG0105|consensus
Probab=98.97 E-value=6.8e-10 Score=71.26 Aligned_cols=58 Identities=26% Similarity=0.480 Sum_probs=49.7
Q ss_pred CccCCceeeEEEEEecCCCCCcccccccccccccCcceEEEEEEcCHHHHHHHHHhhCCcEECCEEEEEEeeCCC
Q psy16913 1 MFLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQIGMKRLKVQLKRPK 75 (81)
Q Consensus 1 lF~~~G~i~~v~i~~~~~~~~~kg~~~~~~~~~~~~~~~~fV~f~~~~~A~~Ai~~lng~~i~g~~i~V~~a~~~ 75 (81)
||.+||.|..|.+...+ .... ||||+|+++.||+.||..-||+.++|..|+|+++..-
T Consensus 26 lFyKyg~i~~ieLK~r~---g~pp--------------fafVeFEd~RDAeDAiygRdGYdydg~rLRVEfprgg 83 (241)
T KOG0105|consen 26 LFYKYGRIREIELKNRP---GPPP--------------FAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFPRGG 83 (241)
T ss_pred HHhhhcceEEEEeccCC---CCCC--------------eeEEEecCccchhhhhhcccccccCcceEEEEeccCC
Confidence 68999999998765433 2234 9999999999999999999999999999999998653
No 61
>KOG0131|consensus
Probab=98.97 E-value=4.6e-10 Score=71.52 Aligned_cols=63 Identities=32% Similarity=0.511 Sum_probs=57.5
Q ss_pred CccCCceeeEE-EEEecCCCCCcccccccccccccCcceEEEEEEcCHHHHHHHHHhhCCcEECCEEEEEEeeCCCCC
Q psy16913 1 MFLPFGNVISS-KVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQIGMKRLKVQLKRPKDA 77 (81)
Q Consensus 1 lF~~~G~i~~v-~i~~~~~~~~~kg~~~~~~~~~~~~~~~~fV~f~~~~~A~~Ai~~lng~~i~g~~i~V~~a~~~~~ 77 (81)
+|+.||.|.+. ++++++.||.++| ||||.|.+.+.+++|+..|||..+..+++.|.++..++.
T Consensus 116 tFsafG~l~~~P~i~rd~~tg~~~~--------------~g~i~~~sfeasd~ai~s~ngq~l~nr~itv~ya~k~~~ 179 (203)
T KOG0131|consen 116 TFSAFGVLISPPKIMRDPDTGNPKG--------------FGFINYASFEASDAAIGSMNGQYLCNRPITVSYAFKKDT 179 (203)
T ss_pred HHHhccccccCCcccccccCCCCCC--------------CeEEechhHHHHHHHHHHhccchhcCCceEEEEEEecCC
Confidence 48899998774 8899999999999 999999999999999999999999999999999977653
No 62
>KOG4661|consensus
Probab=98.94 E-value=1.1e-09 Score=79.62 Aligned_cols=61 Identities=21% Similarity=0.527 Sum_probs=53.6
Q ss_pred CccCCceeeEEEEEecCCCCCcccccccccccccCcceEEEEEEcCHHHHHHHHHhhCCcEECCEEEEEEeeCCC
Q psy16913 1 MFLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQIGMKRLKVQLKRPK 75 (81)
Q Consensus 1 lF~~~G~i~~v~i~~~~~~~~~kg~~~~~~~~~~~~~~~~fV~f~~~~~A~~Ai~~lng~~i~g~~i~V~~a~~~ 75 (81)
||++||+|+-++|+++..+--. +||+||++.+.++|.+||+.|+.+.|.|+.|.|..+++.
T Consensus 425 lFSKyGKVvGAKVVTNaRsPGa--------------RCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEkaKNE 485 (940)
T KOG4661|consen 425 LFSKYGKVVGAKVVTNARSPGA--------------RCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEKAKNE 485 (940)
T ss_pred HHHHhcceeceeeeecCCCCCc--------------ceeEEEEecchHHHHHHHHHhhhhhhcceeeeeeecccC
Confidence 6999999999999987644333 459999999999999999999999999999999988653
No 63
>KOG0109|consensus
Probab=98.93 E-value=1.7e-09 Score=73.23 Aligned_cols=57 Identities=30% Similarity=0.501 Sum_probs=52.2
Q ss_pred CccCCceeeEEEEEecCCCCCcccccccccccccCcceEEEEEEcCHHHHHHHHHhhCCcEECCEEEEEEeeCCCCCCC
Q psy16913 1 MFLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQIGMKRLKVQLKRPKDAAR 79 (81)
Q Consensus 1 lF~~~G~i~~v~i~~~~~~~~~kg~~~~~~~~~~~~~~~~fV~f~~~~~A~~Ai~~lng~~i~g~~i~V~~a~~~~~~~ 79 (81)
.|++||+|.+++|++| |+||.|+-.++|..||..||++++.|+++.|+++.++-...
T Consensus 98 ~fe~ygpviecdivkd----------------------y~fvh~d~~eda~~air~l~~~~~~gk~m~vq~stsrlrta 154 (346)
T KOG0109|consen 98 KFEKYGPVIECDIVKD----------------------YAFVHFDRAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTA 154 (346)
T ss_pred hhcccCCceeeeeecc----------------------eeEEEEeeccchHHHHhcccccccccceeeeeeeccccccC
Confidence 4899999999999876 99999999999999999999999999999999998875543
No 64
>KOG0127|consensus
Probab=98.90 E-value=1.6e-09 Score=78.12 Aligned_cols=63 Identities=17% Similarity=0.340 Sum_probs=59.0
Q ss_pred CccCCceeeEEEEEecCCCCCcccccccccccccCcceEEEEEEcCHHHHHHHHHhhCCcEECCEEEEEEeeCCCCC
Q psy16913 1 MFLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQIGMKRLKVQLKRPKDA 77 (81)
Q Consensus 1 lF~~~G~i~~v~i~~~~~~~~~kg~~~~~~~~~~~~~~~~fV~f~~~~~A~~Ai~~lng~~i~g~~i~V~~a~~~~~ 77 (81)
+|+.+|+|..+.++.++.++.++| ||||+|.-.+|+++|+..+++..+.|+.|+|..|.++..
T Consensus 25 ~FS~vGPik~~~vVt~~gs~~~RG--------------fgfVtFam~ED~qrA~~e~~~~kf~Gr~l~v~~A~~R~r 87 (678)
T KOG0127|consen 25 FFSYVGPIKHAVVVTNKGSSEKRG--------------FGFVTFAMEEDVQRALAETEQSKFEGRILNVDPAKKRAR 87 (678)
T ss_pred hhhcccCcceeEEecCCCcccccC--------------ccceeeehHhHHHHHHHHhhcCcccceeccccccccccc
Confidence 589999999999999998889999 999999999999999999999999999999999977653
No 65
>KOG0110|consensus
Probab=98.85 E-value=1.5e-09 Score=79.76 Aligned_cols=62 Identities=24% Similarity=0.448 Sum_probs=56.1
Q ss_pred CccCCceeeEEEEEecCCCCCcccccccccccccCcceEEEEEEcCHHHHHHHHHhhCCcEECCEEEEEEeeCCCC
Q psy16913 1 MFLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQIGMKRLKVQLKRPKD 76 (81)
Q Consensus 1 lF~~~G~i~~v~i~~~~~~~~~kg~~~~~~~~~~~~~~~~fV~f~~~~~A~~Ai~~lng~~i~g~~i~V~~a~~~~ 76 (81)
||..||.|.+|+|+.-...+.++| ||||+|.++.+|.+|+.+|.++.++||+|.++||....
T Consensus 633 LF~aFGqlksvRlPKK~~k~a~rG--------------F~Fv~f~t~~ea~nA~~al~STHlyGRrLVLEwA~~d~ 694 (725)
T KOG0110|consen 633 LFTAFGQLKSVRLPKKIGKGAHRG--------------FGFVDFLTPREAKNAFDALGSTHLYGRRLVLEWAKSDN 694 (725)
T ss_pred HHhcccceeeeccchhhcchhhcc--------------ceeeeccCcHHHHHHHHhhcccceechhhheehhccch
Confidence 699999999999998755566788 99999999999999999999999999999999997653
No 66
>KOG0146|consensus
Probab=98.77 E-value=1.1e-08 Score=68.88 Aligned_cols=63 Identities=32% Similarity=0.458 Sum_probs=55.7
Q ss_pred CccCCceeeEEEEEecCCCCCcccccccccccccCcceEEEEEEcCHHHHHHHHHhhCCcEEC-C--EEEEEEeeCCCCC
Q psy16913 1 MFLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQIG-M--KRLKVQLKRPKDA 77 (81)
Q Consensus 1 lF~~~G~i~~v~i~~~~~~~~~kg~~~~~~~~~~~~~~~~fV~f~~~~~A~~Ai~~lng~~i~-g--~~i~V~~a~~~~~ 77 (81)
||..||.|.+|.+.+.. .|.+|| ++||.|.+..+|+.||..|+|.... | ..|.|+++...++
T Consensus 39 lf~pfG~~~e~tvlrg~-dg~sKG--------------CAFVKf~s~~eAqaAI~aLHgSqTmpGASSSLVVK~ADTdkE 103 (371)
T KOG0146|consen 39 LFQPFGNIEECTVLRGP-DGNSKG--------------CAFVKFSSHAEAQAAINALHGSQTMPGASSSLVVKFADTDKE 103 (371)
T ss_pred HhcccCCcceeEEecCC-CCCCCC--------------ceEEEeccchHHHHHHHHhcccccCCCCccceEEEeccchHH
Confidence 58999999999999987 789999 9999999999999999999997644 3 6889999987665
Q ss_pred C
Q psy16913 78 A 78 (81)
Q Consensus 78 ~ 78 (81)
|
T Consensus 104 R 104 (371)
T KOG0146|consen 104 R 104 (371)
T ss_pred H
Confidence 4
No 67
>KOG0124|consensus
Probab=98.70 E-value=1.9e-08 Score=70.20 Aligned_cols=59 Identities=27% Similarity=0.471 Sum_probs=55.1
Q ss_pred CccCCceeeEEEEEecCCCCCcccccccccccccCcceEEEEEEcCHHHHHHHHHhhCCcEECCEEEEEEeeC
Q psy16913 1 MFLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQIGMKRLKVQLKR 73 (81)
Q Consensus 1 lF~~~G~i~~v~i~~~~~~~~~kg~~~~~~~~~~~~~~~~fV~f~~~~~A~~Ai~~lng~~i~g~~i~V~~a~ 73 (81)
+|+.||+|+.|.+-+++.++.++| |||++|.+......||..||-+.+.|..|+|-.+.
T Consensus 230 VFEAFG~I~~C~LAr~pt~~~HkG--------------yGfiEy~n~qs~~eAiasMNlFDLGGQyLRVGk~v 288 (544)
T KOG0124|consen 230 VFEAFGEIVKCQLARAPTGRGHKG--------------YGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCV 288 (544)
T ss_pred HHHhhcceeeEEeeccCCCCCccc--------------eeeEEeccccchHHHhhhcchhhcccceEeccccc
Confidence 488999999999999998888999 99999999999999999999999999999998764
No 68
>KOG0110|consensus
Probab=98.68 E-value=6.5e-08 Score=71.36 Aligned_cols=62 Identities=27% Similarity=0.502 Sum_probs=50.9
Q ss_pred CccCCceeeEEEEEecCCCCCcccccccccccccCcceEEEEEEcCHHHHHHHHHhhCCcEECCEEEEEEeeC
Q psy16913 1 MFLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQIGMKRLKVQLKR 73 (81)
Q Consensus 1 lF~~~G~i~~v~i~~~~~~~~~kg~~~~~~~~~~~~~~~~fV~f~~~~~A~~Ai~~lng~~i~g~~i~V~~a~ 73 (81)
+|...|.|.++.|..-+.... +- .++|||||+|.++++|++|++.|+|+.|+|+.|.|+++.
T Consensus 535 ~F~k~G~VlS~~I~kkkd~~~-k~----------lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S~ 596 (725)
T KOG0110|consen 535 LFSKQGTVLSIEISKKKDPAN-KY----------LSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKISE 596 (725)
T ss_pred HHHhcCeEEEEEEeccccccc-cc----------cccceeEEEecCHHHHHHHHHHhcCceecCceEEEEecc
Confidence 377889999998876653221 21 233499999999999999999999999999999999987
No 69
>KOG4209|consensus
Probab=98.59 E-value=1.1e-07 Score=62.83 Aligned_cols=59 Identities=25% Similarity=0.380 Sum_probs=54.8
Q ss_pred ccCCceeeEEEEEecCCCCCcccccccccccccCcceEEEEEEcCHHHHHHHHHhhCCcEECCEEEEEEeeCCC
Q psy16913 2 FLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQIGMKRLKVQLKRPK 75 (81)
Q Consensus 2 F~~~G~i~~v~i~~~~~~~~~kg~~~~~~~~~~~~~~~~fV~f~~~~~A~~Ai~~lng~~i~g~~i~V~~a~~~ 75 (81)
|+.||.|..+.|+.|+.+++++| |+||+|.+.+.+..|+. |||..|.|+.+.|.+.+-+
T Consensus 122 f~~Cg~i~~~ti~~d~~~~~~k~--------------~~yvef~~~~~~~~ay~-l~gs~i~~~~i~vt~~r~~ 180 (231)
T KOG4209|consen 122 FESCGGINRVTVPKDKFRGHPKG--------------FAYVEFSSYELVEEAYK-LDGSEIPGPAIEVTLKRTN 180 (231)
T ss_pred eeccCCccceeeeccccCCCcce--------------eEEEecccHhhhHHHhh-cCCcccccccceeeeeeee
Confidence 78899999999999999999999 99999999999999999 9999999999999887543
No 70
>KOG0226|consensus
Probab=98.59 E-value=2.1e-08 Score=66.82 Aligned_cols=58 Identities=36% Similarity=0.592 Sum_probs=50.9
Q ss_pred ccCCceeeEEEEEecCCCCCcccccccccccccCcceEEEEEEcCHHHHHHHHHhhCCcEECCEEEEEEeeC
Q psy16913 2 FLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQIGMKRLKVQLKR 73 (81)
Q Consensus 2 F~~~G~i~~v~i~~~~~~~~~kg~~~~~~~~~~~~~~~~fV~f~~~~~A~~Ai~~lng~~i~g~~i~V~~a~ 73 (81)
|.+|-.-...++++|+.||+++| |+||.|.++.|+.+|+.+|||.-++.+.|++.-+.
T Consensus 211 f~Kfpsf~~akviRdkRTgKSkg--------------ygfVSf~~pad~~rAmrem~gkyVgsrpiklRkS~ 268 (290)
T KOG0226|consen 211 FKKFPSFQKAKVIRDKRTGKSKG--------------YGFVSFRDPADYVRAMREMNGKYVGSRPIKLRKSE 268 (290)
T ss_pred HHhccchhhcccccccccccccc--------------ceeeeecCHHHHHHHHHhhcccccccchhHhhhhh
Confidence 45566666788999999999999 99999999999999999999999999998876543
No 71
>KOG4205|consensus
Probab=98.54 E-value=6.1e-08 Score=66.40 Aligned_cols=62 Identities=24% Similarity=0.482 Sum_probs=54.9
Q ss_pred ccCCceeeEEEEEecCCCCCcccccccccccccCcceEEEEEEcCHHHHHHHHHhhCCcEECCEEEEEEeeCCCCCC
Q psy16913 2 FLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQIGMKRLKVQLKRPKDAA 78 (81)
Q Consensus 2 F~~~G~i~~v~i~~~~~~~~~kg~~~~~~~~~~~~~~~~fV~f~~~~~A~~Ai~~lng~~i~g~~i~V~~a~~~~~~ 78 (81)
|++||+|.++.+++|+.+++++| |+||+|.+++...+++.. .-..|+|+.|.+..|.++...
T Consensus 27 f~~~Gev~d~~vm~d~~t~rsrg--------------Fgfv~f~~~~~v~~vl~~-~~h~~dgr~ve~k~av~r~~~ 88 (311)
T KOG4205|consen 27 FSQFGEVTDCVVMRDPSTGRSRG--------------FGFVTFATPEGVDAVLNA-RTHKLDGRSVEPKRAVSREDQ 88 (311)
T ss_pred hcccCceeeEEEeccCCCCCccc--------------ccceecCCCcchheeecc-cccccCCccccceeccCcccc
Confidence 68999999999999999999999 999999999998888774 347799999999999887653
No 72
>KOG4212|consensus
Probab=98.52 E-value=2.3e-07 Score=66.00 Aligned_cols=55 Identities=18% Similarity=0.414 Sum_probs=50.4
Q ss_pred cCCceeeEEEEEecCCCCCcccccccccccccCcceEEEEEEcCHHHHHHHHHhhCCcEECCEEEEEEee
Q psy16913 3 LPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQIGMKRLKVQLK 72 (81)
Q Consensus 3 ~~~G~i~~v~i~~~~~~~~~kg~~~~~~~~~~~~~~~~fV~f~~~~~A~~Ai~~lng~~i~g~~i~V~~a 72 (81)
++-|+|..|.+..|. +|+++| +|.|+|.++|.+++|++.||.+.+.||+|.|+-.
T Consensus 67 ekvGev~yveLl~D~-~GK~rG--------------cavVEFk~~E~~qKa~E~lnk~~~~GR~l~vKEd 121 (608)
T KOG4212|consen 67 EKVGEVEYVELLFDE-SGKARG--------------CAVVEFKDPENVQKALEKLNKYEVNGRELVVKED 121 (608)
T ss_pred HhcCceEeeeeeccc-CCCcCC--------------ceEEEeeCHHHHHHHHHHhhhccccCceEEEecc
Confidence 356899999999986 899999 9999999999999999999999999999999854
No 73
>KOG1190|consensus
Probab=98.51 E-value=3.8e-07 Score=64.27 Aligned_cols=56 Identities=20% Similarity=0.412 Sum_probs=51.0
Q ss_pred CccCCceeeEEEEEecCCCCCcccccccccccccCcceEEEEEEcCHHHHHHHHHhhCCcEECCEEEEEEeeCCC
Q psy16913 1 MFLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQIGMKRLKVQLKRPK 75 (81)
Q Consensus 1 lF~~~G~i~~v~i~~~~~~~~~kg~~~~~~~~~~~~~~~~fV~f~~~~~A~~Ai~~lng~~i~g~~i~V~~a~~~ 75 (81)
||+.||.|.+|+|..++. - -|.|+|.+...|+-|++.|+|..+.|++|+|.+++-.
T Consensus 318 lFgvYGdVqRVkil~nkk-----d--------------~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SKH~ 373 (492)
T KOG1190|consen 318 LFGVYGDVQRVKILYNKK-----D--------------NALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSKHT 373 (492)
T ss_pred HHhhhcceEEEEeeecCC-----c--------------ceeeeecchhHHHHHHHHhhcceecCceEEEeeccCc
Confidence 689999999999998873 3 7899999999999999999999999999999998644
No 74
>KOG4205|consensus
Probab=98.49 E-value=1.6e-07 Score=64.37 Aligned_cols=62 Identities=27% Similarity=0.484 Sum_probs=56.6
Q ss_pred ccCCceeeEEEEEecCCCCCcccccccccccccCcceEEEEEEcCHHHHHHHHHhhCCcEECCEEEEEEeeCCCCCC
Q psy16913 2 FLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQIGMKRLKVQLKRPKDAA 78 (81)
Q Consensus 2 F~~~G~i~~v~i~~~~~~~~~kg~~~~~~~~~~~~~~~~fV~f~~~~~A~~Ai~~lng~~i~g~~i~V~~a~~~~~~ 78 (81)
|++||.|..+.++.|+.+.+++| |+||+|.+++.+++++. ..-+.|.|+.+.|..|.|+...
T Consensus 118 fe~~g~v~~~~~~~d~~~~~~rg--------------Fgfv~~~~e~sVdkv~~-~~f~~~~gk~vevkrA~pk~~~ 179 (311)
T KOG4205|consen 118 FEQFGKVADVVIMYDKTTSRPRG--------------FGFVTFDSEDSVDKVTL-QKFHDFNGKKVEVKRAIPKEVM 179 (311)
T ss_pred hhccceeEeeEEeeccccccccc--------------ceeeEeccccccceecc-cceeeecCceeeEeeccchhhc
Confidence 78999999999999999999999 99999999999998876 6778999999999999998654
No 75
>KOG0132|consensus
Probab=98.47 E-value=2.4e-07 Score=69.20 Aligned_cols=59 Identities=19% Similarity=0.317 Sum_probs=52.7
Q ss_pred CccCCceeeEEEEEecCCCCCcccccccccccccCcceEEEEEEcCHHHHHHHHHhhCCcEECCEEEEEEeeCCCCCCC
Q psy16913 1 MFLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQIGMKRLKVQLKRPKDAAR 79 (81)
Q Consensus 1 lF~~~G~i~~v~i~~~~~~~~~kg~~~~~~~~~~~~~~~~fV~f~~~~~A~~Ai~~lng~~i~g~~i~V~~a~~~~~~~ 79 (81)
+|+.||+|.+|.++.. +| +|||++....+|.+|+..|+...+.++.|+|.||..+..+.
T Consensus 441 ~feefGeiqSi~li~~------R~--------------cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~g~G~ks 499 (894)
T KOG0132|consen 441 LFEEFGEIQSIILIPP------RG--------------CAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAVGKGPKS 499 (894)
T ss_pred HHHhcccceeEeeccC------Cc--------------eeEEEEeehhHHHHHHHHHhcccccceeeEEeeeccCCcch
Confidence 5899999999988865 45 99999999999999999999999999999999998765543
No 76
>KOG2314|consensus
Probab=98.33 E-value=6.8e-07 Score=65.11 Aligned_cols=56 Identities=23% Similarity=0.398 Sum_probs=48.8
Q ss_pred CccCCceeeEEEEEecCCCCCcccccccccccccCcceEEEEEEcCHHHHHHHHHhhCCcEEC-CEEEEEEe
Q psy16913 1 MFLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQIG-MKRLKVQL 71 (81)
Q Consensus 1 lF~~~G~i~~v~i~~~~~~~~~kg~~~~~~~~~~~~~~~~fV~f~~~~~A~~Ai~~lng~~i~-g~~i~V~~ 71 (81)
+|+++|+|+...++.+..+| .+| |.|++|.+..+|+.|++.|||+.++ .+.+.|..
T Consensus 84 vfsk~gk~vn~~~P~~e~gg-tkG--------------~lf~E~~~~~~A~~aVK~l~G~~ldknHtf~v~~ 140 (698)
T KOG2314|consen 84 VFSKAGKIVNMYYPIDEEGG-TKG--------------YLFVEYASMRDAKKAVKSLNGKRLDKNHTFFVRL 140 (698)
T ss_pred HHHhhccccceeeccCccCC-eee--------------EEEEEecChhhHHHHHHhcccceecccceEEeeh
Confidence 58999999999999888655 888 9999999999999999999999998 45555553
No 77
>KOG0151|consensus
Probab=98.31 E-value=7.2e-07 Score=66.31 Aligned_cols=63 Identities=25% Similarity=0.448 Sum_probs=52.1
Q ss_pred CccCCceeeEEEEEecCCCCCcccccccccccccCcceEEEEEEcCHHHHHHHHHhhCCcEECCEEEEEEeeCC
Q psy16913 1 MFLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQIGMKRLKVQLKRP 74 (81)
Q Consensus 1 lF~~~G~i~~v~i~~~~~~~~~kg~~~~~~~~~~~~~~~~fV~f~~~~~A~~Ai~~lng~~i~g~~i~V~~a~~ 74 (81)
.|+.||+|.+++|+..+....++ +.+.+|||.|.+..||++|++.|+|..+.++.+++-|+++
T Consensus 194 tfGrfgPlasvKimwpRtEeEk~-----------r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~K~gWgk~ 256 (877)
T KOG0151|consen 194 TFGRFGPLASVKIMWPRTEEEKR-----------RERNCGFVAFMNRADAERALKELQGIIVMEYEMKLGWGKA 256 (877)
T ss_pred HhcccCcccceeeecccchhhhc-----------cccccceeeehhhhhHHHHHHHhcceeeeeeeeeeccccc
Confidence 38899999999999877332221 1234899999999999999999999999999999999843
No 78
>KOG0153|consensus
Probab=98.22 E-value=3.9e-06 Score=58.07 Aligned_cols=54 Identities=30% Similarity=0.518 Sum_probs=46.8
Q ss_pred ccCCceeeEEEEEecCCCCCcccccccccccccCcceEEEEEEcCHHHHHHHHHh-hCCcEECCEEEEEEeeCCC
Q psy16913 2 FLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQA-MNGFQIGMKRLKVQLKRPK 75 (81)
Q Consensus 2 F~~~G~i~~v~i~~~~~~~~~kg~~~~~~~~~~~~~~~~fV~f~~~~~A~~Ai~~-lng~~i~g~~i~V~~a~~~ 75 (81)
|.+||+|.++.+...+ + +|||+|.+.+.|+.|... +|-..|+|++|.|.|..++
T Consensus 249 FyqyGeirsi~~~~~~------~--------------CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~i~Wg~~~ 303 (377)
T KOG0153|consen 249 FYQYGEIRSIRILPRK------G--------------CAFVTFTTREAAEKAAEKSFNKLVINGFRLKIKWGRPK 303 (377)
T ss_pred HhhcCCeeeEEeeccc------c--------------cceeeehhhHHHHHHHHhhcceeeecceEEEEEeCCCc
Confidence 7899999999887653 4 899999999999998766 6767799999999999883
No 79
>KOG0147|consensus
Probab=98.20 E-value=1.2e-06 Score=63.26 Aligned_cols=58 Identities=28% Similarity=0.366 Sum_probs=54.1
Q ss_pred CccCCceeeEEEEEecCCCCCcccccccccccccCcceEEEEEEcCHHHHHHHHHhhCCcEECCEEEEEEeeC
Q psy16913 1 MFLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQIGMKRLKVQLKR 73 (81)
Q Consensus 1 lF~~~G~i~~v~i~~~~~~~~~kg~~~~~~~~~~~~~~~~fV~f~~~~~A~~Ai~~lng~~i~g~~i~V~~a~ 73 (81)
+|+.+|+|..|.||.|+.++.++| .+||+|.+.+....||. |.|..+.|.+|.|+...
T Consensus 199 fFs~~gkVrdVriI~Dr~s~rskg--------------i~Yvef~D~~sVp~aia-LsGqrllg~pv~vq~sE 256 (549)
T KOG0147|consen 199 FFSIVGKVRDVRIIGDRNSRRSKG--------------IAYVEFCDEQSVPLAIA-LSGQRLLGVPVIVQLSE 256 (549)
T ss_pred HHHhhcCcceeEeeccccchhhcc--------------eeEEEEecccchhhHhh-hcCCcccCceeEecccH
Confidence 589999999999999999999999 99999999999999995 99999999999998753
No 80
>KOG0533|consensus
Probab=98.16 E-value=4.6e-06 Score=55.53 Aligned_cols=60 Identities=25% Similarity=0.407 Sum_probs=54.3
Q ss_pred CccCCceeeEEEEEecCCCCCcccccccccccccCcceEEEEEEcCHHHHHHHHHhhCCcEECCEEEEEEeeCCC
Q psy16913 1 MFLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQIGMKRLKVQLKRPK 75 (81)
Q Consensus 1 lF~~~G~i~~v~i~~~~~~~~~kg~~~~~~~~~~~~~~~~fV~f~~~~~A~~Ai~~lng~~i~g~~i~V~~a~~~ 75 (81)
||..||.+..+-+-+++ +|.+.| .|-|.|...+||..|++.+||..++|+.|.+....+.
T Consensus 103 LF~~~~~~~r~~vhy~~-~G~s~G--------------ta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~i~~~ 162 (243)
T KOG0533|consen 103 LFAEFGELKRVAVHYDR-AGRSLG--------------TADVSFNRRDDAERAVKKYNGVALDGRPMKIEIISSP 162 (243)
T ss_pred HHHHhccceEEeeccCC-CCCCCc--------------cceeeecchHhHHHHHHHhcCcccCCceeeeEEecCc
Confidence 58899999999888887 888888 9999999999999999999999999999998887554
No 81
>KOG0120|consensus
Probab=98.14 E-value=9.4e-06 Score=58.68 Aligned_cols=62 Identities=16% Similarity=0.217 Sum_probs=49.4
Q ss_pred ccCCceeeEEEEEecCCCCCcccccccccccccCcceEEEEEEcCHHHHHHHHHhhCCcEECCEEEEEEeeCC
Q psy16913 2 FLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQIGMKRLKVQLKRP 74 (81)
Q Consensus 2 F~~~G~i~~v~i~~~~~~~~~kg~~~~~~~~~~~~~~~~fV~f~~~~~A~~Ai~~lng~~i~g~~i~V~~a~~ 74 (81)
+++||.|.+|.++++-..+.. ....|--||+|.+.+++++|.++|+|.++.||.+...|-.+
T Consensus 430 c~k~g~v~~v~ipr~~~~~~~-----------~~G~GkVFVefas~ed~qrA~~~L~GrKF~nRtVvtsYyde 491 (500)
T KOG0120|consen 430 CAKFGAVRSVEIPRPYPDENP-----------VPGTGKVFVEFADTEDSQRAMEELTGRKFANRTVVASYYDE 491 (500)
T ss_pred hcccCceeEEecCCCCCCCCc-----------CCCcccEEEEecChHHHHHHHHHccCceeCCcEEEEEecCH
Confidence 478999999999988323221 12244789999999999999999999999999988877543
No 82
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=98.12 E-value=6.7e-06 Score=57.19 Aligned_cols=63 Identities=14% Similarity=0.212 Sum_probs=45.3
Q ss_pred CccCCceeeEEEEEecCCCCCcccccccccccccCcceEEEEEEcCHHHHHHHHHhhCCcEECCEEEEEEeeCC
Q psy16913 1 MFLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQIGMKRLKVQLKRP 74 (81)
Q Consensus 1 lF~~~G~i~~v~i~~~~~~~~~kg~~~~~~~~~~~~~~~~fV~f~~~~~A~~Ai~~lng~~i~g~~i~V~~a~~ 74 (81)
.|++||.|..+.|-+...+..+.. +. .=.|++|...+||.+||.+.+|..++||.|+..+...
T Consensus 140 yFGQyGkI~KIvvNkkt~s~nst~---------~h--~gvYITy~~kedAarcIa~vDgs~~DGr~lkatYGTT 202 (480)
T COG5175 140 YFGQYGKIKKIVVNKKTSSLNSTA---------SH--AGVYITYSTKEDAARCIAEVDGSLLDGRVLKATYGTT 202 (480)
T ss_pred hhhhccceeEEEeccccccccccc---------cc--ceEEEEecchHHHHHHHHHhccccccCceEeeecCch
Confidence 489999999875433221111111 00 0149999999999999999999999999999887643
No 83
>KOG0106|consensus
Probab=97.96 E-value=3.4e-06 Score=55.27 Aligned_cols=52 Identities=29% Similarity=0.563 Sum_probs=45.0
Q ss_pred CccCCceeeEEEEEecCCCCCcccccccccccccCcceEEEEEEcCHHHHHHHHHhhCCcEECCEEEEEEeeCC
Q psy16913 1 MFLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQIGMKRLKVQLKRP 74 (81)
Q Consensus 1 lF~~~G~i~~v~i~~~~~~~~~kg~~~~~~~~~~~~~~~~fV~f~~~~~A~~Ai~~lng~~i~g~~i~V~~a~~ 74 (81)
+|..||.|.++.|.. | |+||+|++..+|..|+..+|+..+.|-.+.|+++..
T Consensus 21 ~f~~yg~~~d~~mk~--------g--------------f~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~ 72 (216)
T KOG0106|consen 21 FFKGYGKIPDADMKN--------G--------------FGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARG 72 (216)
T ss_pred HHhhccccccceeec--------c--------------cceeccCchhhhhcccchhcCceecceeeeeecccc
Confidence 477788888776543 4 999999999999999999999999998899999875
No 84
>KOG1548|consensus
Probab=97.90 E-value=6.2e-05 Score=52.29 Aligned_cols=55 Identities=31% Similarity=0.376 Sum_probs=46.0
Q ss_pred cCCceeeEEEEEecCCCCCcccccccccccccCcceEEEEEEcCHHHHHHHHHhhCCcEECCEEEEEEeeCCC
Q psy16913 3 LPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQIGMKRLKVQLKRPK 75 (81)
Q Consensus 3 ~~~G~i~~v~i~~~~~~~~~kg~~~~~~~~~~~~~~~~fV~f~~~~~A~~Ai~~lng~~i~g~~i~V~~a~~~ 75 (81)
++||+|.+|.|. ++ .+.| .+-|.|.+.++|+.||+.|+|.-++||.|..++...+
T Consensus 298 ~K~G~v~~vvv~-d~---hPdG--------------vvtV~f~n~eeA~~ciq~m~GR~fdgRql~A~i~DG~ 352 (382)
T KOG1548|consen 298 EKFGQVRKVVVY-DR---HPDG--------------VVTVSFRNNEEADQCIQTMDGRWFDGRQLTASIWDGK 352 (382)
T ss_pred HHhCCcceEEEe-cc---CCCc--------------eeEEEeCChHHHHHHHHHhcCeeecceEEEEEEeCCc
Confidence 578999888654 32 4566 9999999999999999999999999999998876443
No 85
>KOG4212|consensus
Probab=97.86 E-value=1.7e-05 Score=56.74 Aligned_cols=52 Identities=29% Similarity=0.441 Sum_probs=43.5
Q ss_pred ccCCceeeEEEEEecCCCCCcccccccccccccCcceEEEEEEcCHHHHHHHHHhhCCcEECCEEEEEEee
Q psy16913 2 FLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQIGMKRLKVQLK 72 (81)
Q Consensus 2 F~~~G~i~~v~i~~~~~~~~~kg~~~~~~~~~~~~~~~~fV~f~~~~~A~~Ai~~lng~~i~g~~i~V~~a 72 (81)
|-.||.|..+.|+ ..|+++| .|.|.++++|++|+..|||..++||.|+|.+.
T Consensus 557 fre~G~v~yadim---e~GkskG----------------VVrF~s~edAEra~a~Mngs~l~Gr~I~V~y~ 608 (608)
T KOG4212|consen 557 FREIGHVLYADIM---ENGKSKG----------------VVRFFSPEDAERACALMNGSRLDGRNIKVTYF 608 (608)
T ss_pred HHhccceehhhhh---ccCCccc----------------eEEecCHHHHHHHHHHhccCcccCceeeeeeC
Confidence 5567888877773 2466665 89999999999999999999999999999873
No 86
>KOG4660|consensus
Probab=97.80 E-value=3.5e-06 Score=60.99 Aligned_cols=49 Identities=29% Similarity=0.440 Sum_probs=42.3
Q ss_pred CccCCceeeEEEEEecCCCCCcccccccccccccCcceEEEEEEcCHHHHHHHHHhhCCcEECCEEEE
Q psy16913 1 MFLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQIGMKRLK 68 (81)
Q Consensus 1 lF~~~G~i~~v~i~~~~~~~~~kg~~~~~~~~~~~~~~~~fV~f~~~~~A~~Ai~~lng~~i~g~~i~ 68 (81)
+|+.||+|..++. |-..+| ..||+|.|..+|++|+++||+..+.|+.|+
T Consensus 95 ~f~~yGeir~ir~-----t~~~~~--------------~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k 143 (549)
T KOG4660|consen 95 IFGAYGEIREIRE-----TPNKRG--------------IVFVEFYDVRDAERALKALNRREIAGKRIK 143 (549)
T ss_pred HHHhhcchhhhhc-----ccccCc--------------eEEEEEeehHhHHHHHHHHHHHHhhhhhhc
Confidence 5889999998653 334467 999999999999999999999999999887
No 87
>KOG0120|consensus
Probab=97.78 E-value=1.2e-05 Score=58.18 Aligned_cols=60 Identities=33% Similarity=0.501 Sum_probs=54.8
Q ss_pred ccCCceeeEEEEEecCCCCCcccccccccccccCcceEEEEEEcCHHHHHHHHHhhCCcEECCEEEEEEeeCCC
Q psy16913 2 FLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQIGMKRLKVQLKRPK 75 (81)
Q Consensus 2 F~~~G~i~~v~i~~~~~~~~~kg~~~~~~~~~~~~~~~~fV~f~~~~~A~~Ai~~lng~~i~g~~i~V~~a~~~ 75 (81)
.+.||++..-.++.|..+|.++| |||.+|.++.....|+..|||..+.++.|.|+.|.+.
T Consensus 310 l~~fg~lk~f~lv~d~~~g~skg--------------~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~A~~g 369 (500)
T KOG0120|consen 310 LDSFGPLKAFRLVKDSATGNSKG--------------FAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQRAIVG 369 (500)
T ss_pred HHhcccchhheeecccccccccc--------------eeeeeeeCCcchhhhhcccchhhhcCceeEeehhhcc
Confidence 35689999999999998899999 9999999999999999999999999999999998654
No 88
>KOG4454|consensus
Probab=97.78 E-value=1.5e-05 Score=52.59 Aligned_cols=57 Identities=25% Similarity=0.308 Sum_probs=48.5
Q ss_pred CccCCceeeEEEEEecCCCCCcccccccccccccCcceEEEEEEcCHHHHHHHHHhhCCcEECCEEEEEEeeC
Q psy16913 1 MFLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQIGMKRLKVQLKR 73 (81)
Q Consensus 1 lF~~~G~i~~v~i~~~~~~~~~kg~~~~~~~~~~~~~~~~fV~f~~~~~A~~Ai~~lng~~i~g~~i~V~~a~ 73 (81)
||-+-|+|..|.|+.++ .++.+ ||||.|.++-...-|++.|||..+.++.+.+++-.
T Consensus 29 lfiqaGPV~kv~ip~~~-d~~~k---------------Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~r~ 85 (267)
T KOG4454|consen 29 LFIQAGPVYKVGIPSGQ-DQEQK---------------FAYVFFPNENSVQLAGQLENGDDLEEDEEQRTLRC 85 (267)
T ss_pred HhhccCceEEEeCCCCc-cCCCc---------------eeeeecccccchhhhhhhcccchhccchhhccccc
Confidence 46678999999998876 33333 99999999999999999999999999999888643
No 89
>KOG1457|consensus
Probab=97.77 E-value=0.00012 Score=48.63 Aligned_cols=38 Identities=24% Similarity=0.451 Sum_probs=34.9
Q ss_pred EEEEEEcCHHHHHHHHHhhCCcEEC---CEEEEEEeeCCCC
Q psy16913 39 FGFVSFDNPASAHTAIQAMNGFQIG---MKRLKVQLKRPKD 76 (81)
Q Consensus 39 ~~fV~f~~~~~A~~Ai~~lng~~i~---g~~i~V~~a~~~~ 76 (81)
+|||+|.+..+|..|+..|||..++ +..|.+++|+...
T Consensus 79 vaFatF~s~q~A~aamnaLNGvrFDpE~~stLhiElAKSNt 119 (284)
T KOG1457|consen 79 VAFATFTSHQFALAAMNALNGVRFDPETGSTLHIELAKSNT 119 (284)
T ss_pred eEEEEecchHHHHHHHHHhcCeeeccccCceeEeeehhcCc
Confidence 9999999999999999999999998 7899999986654
No 90
>KOG0116|consensus
Probab=97.72 E-value=6.6e-05 Score=53.47 Aligned_cols=60 Identities=35% Similarity=0.702 Sum_probs=47.7
Q ss_pred CccCCceeeEEEEEecCCCCCcccccccccccccCcceEEEEEEcCHHHHHHHHHhhCCcEECCEEEEEEeeCCC
Q psy16913 1 MFLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQIGMKRLKVQLKRPK 75 (81)
Q Consensus 1 lF~~~G~i~~v~i~~~~~~~~~kg~~~~~~~~~~~~~~~~fV~f~~~~~A~~Ai~~lng~~i~g~~i~V~~a~~~ 75 (81)
+|.+||+|+...|..-...+...+ ||||+|.+.++++.||++ +-..|+++++.|+.-++.
T Consensus 308 ~Fk~FG~Ik~~~I~vr~~~~~~~~--------------fgFV~f~~~~~~~~~i~A-sp~~ig~~kl~Veek~~~ 367 (419)
T KOG0116|consen 308 VFKQFGPIKEGGIQVRSPGGKNPC--------------FGFVEFENAAAVQNAIEA-SPLEIGGRKLNVEEKRPG 367 (419)
T ss_pred HHhhcccccccceEEeccCCCcCc--------------eEEEEEeecchhhhhhhc-CccccCCeeEEEEecccc
Confidence 488999999988776542333335 999999999999999985 467889999999976653
No 91
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=97.67 E-value=6.9e-05 Score=42.65 Aligned_cols=47 Identities=21% Similarity=0.261 Sum_probs=32.9
Q ss_pred ccccccccCcceEEEEEEcCHHHHHHHHHhhCCcEECCEEEEEEeeC
Q psy16913 27 ECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQIGMKRLKVQLKR 73 (81)
Q Consensus 27 ~~~~~~~~~~~~~~fV~f~~~~~A~~Ai~~lng~~i~g~~i~V~~a~ 73 (81)
.|.+++..-..+-|.|.|.+++.|++|.+.|+|..+.|..|.|++..
T Consensus 29 NCGGkVl~v~~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~~~~ 75 (90)
T PF11608_consen 29 NCGGKVLSVSGGTAILRFPNQEFAERAQKRMEGEDVFGNKISVSFSP 75 (90)
T ss_dssp TTT--EEE--TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEESS-
T ss_pred ccCCEEEEEeCCEEEEEeCCHHHHHHHHHhhcccccccceEEEEEcC
Confidence 35556655556799999999999999999999999999999999873
No 92
>KOG1456|consensus
Probab=97.61 E-value=0.00023 Score=50.25 Aligned_cols=55 Identities=18% Similarity=0.300 Sum_probs=49.4
Q ss_pred CccCCceeeEEEEEecCCCCCcccccccccccccCcceEEEEEEcCHHHHHHHHHhhCCcEECCEEEEEEeeCC
Q psy16913 1 MFLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQIGMKRLKVQLKRP 74 (81)
Q Consensus 1 lF~~~G~i~~v~i~~~~~~~~~kg~~~~~~~~~~~~~~~~fV~f~~~~~A~~Ai~~lng~~i~g~~i~V~~a~~ 74 (81)
||..||.|.+|+.++.+ .| -|.|++.++...++|+..||+..+-|.+|.|..++.
T Consensus 308 l~ClYGNV~rvkFmkTk-----~g--------------tamVemgd~~aver~v~hLnn~~lfG~kl~v~~SkQ 362 (494)
T KOG1456|consen 308 LFCLYGNVERVKFMKTK-----PG--------------TAMVEMGDAYAVERAVTHLNNIPLFGGKLNVCVSKQ 362 (494)
T ss_pred hhhhcCceeeEEEeecc-----cc--------------eeEEEcCcHHHHHHHHHHhccCccccceEEEeeccc
Confidence 57889999999999876 45 899999999999999999999999999999888754
No 93
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=97.54 E-value=0.0004 Score=43.08 Aligned_cols=51 Identities=31% Similarity=0.576 Sum_probs=39.4
Q ss_pred ccCCceeeEEEEEecCCCCCcccccccccccccCcceEEEEEEcCHHHHHHHHHhhCCcEECCEEEEEEeeCCC
Q psy16913 2 FLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQIGMKRLKVQLKRPK 75 (81)
Q Consensus 2 F~~~G~i~~v~i~~~~~~~~~kg~~~~~~~~~~~~~~~~fV~f~~~~~A~~Ai~~lng~~i~g~~i~V~~a~~~ 75 (81)
|..||.+.-++..-+ --.|+|.+.+.|-+|+. ++|.++.|+.|.|.+..|.
T Consensus 57 ~~~~GevvLvRfv~~----------------------~mwVTF~dg~sALaals-~dg~~v~g~~l~i~LKtpd 107 (146)
T PF08952_consen 57 FAQYGEVVLVRFVGD----------------------TMWVTFRDGQSALAALS-LDGIQVNGRTLKIRLKTPD 107 (146)
T ss_dssp HHCCS-ECEEEEETT----------------------CEEEEESSCHHHHHHHH-GCCSEETTEEEEEEE----
T ss_pred HHhCCceEEEEEeCC----------------------eEEEEECccHHHHHHHc-cCCcEECCEEEEEEeCCcc
Confidence 567888777766654 35899999999999988 9999999999999987664
No 94
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=97.50 E-value=0.00059 Score=39.66 Aligned_cols=56 Identities=23% Similarity=0.243 Sum_probs=45.1
Q ss_pred ceeeEEEEEecCCCCCcccccccccccccCcceEEEEEEcCHHHHHHHHHhhCCcEEC----CEEEEEEeeCCC
Q psy16913 6 GNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQIG----MKRLKVQLKRPK 75 (81)
Q Consensus 6 G~i~~v~i~~~~~~~~~kg~~~~~~~~~~~~~~~~fV~f~~~~~A~~Ai~~lng~~i~----g~~i~V~~a~~~ 75 (81)
|...-+-++.|-.++.+.| ||||-|.+++.|.+-.+.++|..+. .+.+.|.+|+-+
T Consensus 28 g~yDF~YLPiDf~~~~N~G--------------YAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i~yAriQ 87 (97)
T PF04059_consen 28 GKYDFFYLPIDFKNKCNLG--------------YAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEISYARIQ 87 (97)
T ss_pred CcceEEEeeeeccCCCceE--------------EEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEEehhHhh
Confidence 3444456777777777777 9999999999999999999999986 577788888643
No 95
>KOG1995|consensus
Probab=97.49 E-value=5.7e-05 Score=52.41 Aligned_cols=52 Identities=27% Similarity=0.417 Sum_probs=44.4
Q ss_pred EEEEecCCCCCcccccccccccccCcceEEEEEEcCHHHHHHHHHhhCCcEECCEEEEEEeeCCCC
Q psy16913 11 SKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQIGMKRLKVQLKRPKD 76 (81)
Q Consensus 11 v~i~~~~~~~~~kg~~~~~~~~~~~~~~~~fV~f~~~~~A~~Ai~~lng~~i~g~~i~V~~a~~~~ 76 (81)
+.|-+|+.|+.+|| =|.|+|+++..|+.||..+++..+.+..|+|.+|..+.
T Consensus 104 i~~y~dkeT~~~KG--------------eatvS~~D~~~akaai~~~agkdf~gn~ikvs~a~~r~ 155 (351)
T KOG1995|consen 104 IKIYTDKETGAPKG--------------EATVSYEDPPAAKAAIEWFAGKDFCGNTIKVSLAERRT 155 (351)
T ss_pred hhccccccccCcCC--------------ceeeeecChhhhhhhhhhhccccccCCCchhhhhhhcc
Confidence 34556666777777 99999999999999999999999999999999886654
No 96
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=97.42 E-value=0.00061 Score=39.79 Aligned_cols=35 Identities=29% Similarity=0.356 Sum_probs=28.7
Q ss_pred eEEEEEEcCHHHHHHHHHhhCCcEECCEEE-EEEeeC
Q psy16913 38 CFGFVSFDNPASAHTAIQAMNGFQIGMKRL-KVQLKR 73 (81)
Q Consensus 38 ~~~fV~f~~~~~A~~Ai~~lng~~i~g~~i-~V~~a~ 73 (81)
++-.|+|.++.+|.+|+. -||..+.|..| -|.+.+
T Consensus 55 NWi~I~Y~~~~~A~rAL~-~NG~i~~g~~mvGV~~~~ 90 (100)
T PF05172_consen 55 NWIHITYDNPLSAQRALQ-KNGTIFSGSLMVGVKPCD 90 (100)
T ss_dssp TEEEEEESSHHHHHHHHT-TTTEEETTCEEEEEEE-H
T ss_pred CEEEEECCCHHHHHHHHH-hCCeEEcCcEEEEEEEcH
Confidence 389999999999999998 69999998644 476663
No 97
>KOG1456|consensus
Probab=97.41 E-value=0.00071 Score=47.82 Aligned_cols=56 Identities=29% Similarity=0.387 Sum_probs=45.8
Q ss_pred ccCCceeeEEEEEecCCCCCcccccccccccccCcceEEEEEEcCHHHHHHHHHhhCCcEEC-C-EEEEEEeeCCCC
Q psy16913 2 FLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQIG-M-KRLKVQLKRPKD 76 (81)
Q Consensus 2 F~~~G~i~~v~i~~~~~~~~~kg~~~~~~~~~~~~~~~~fV~f~~~~~A~~Ai~~lng~~i~-g-~~i~V~~a~~~~ 76 (81)
.-..|+|.+|.|.+. +|- -|.|+|++.+.|++|-..|||..|+ | ..|+|++|+|.+
T Consensus 143 cnp~GkVlRIvIfkk--ngV-----------------QAmVEFdsv~~AqrAk~alNGADIYsGCCTLKIeyAkP~r 200 (494)
T KOG1456|consen 143 CNPQGKVLRIVIFKK--NGV-----------------QAMVEFDSVEVAQRAKAALNGADIYSGCCTLKIEYAKPTR 200 (494)
T ss_pred cCCCCceEEEEEEec--cce-----------------eeEEeechhHHHHHHHhhcccccccccceeEEEEecCcce
Confidence 345788888877754 333 6899999999999999999999988 3 688999998854
No 98
>KOG1548|consensus
Probab=97.38 E-value=0.0004 Score=48.36 Aligned_cols=58 Identities=17% Similarity=0.271 Sum_probs=46.5
Q ss_pred CccCCceeeE--------EEEEecCCCCCcccccccccccccCcceEEEEEEcCHHHHHHHHHhhCCcEECCEEEEEEee
Q psy16913 1 MFLPFGNVIS--------SKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQIGMKRLKVQLK 72 (81)
Q Consensus 1 lF~~~G~i~~--------v~i~~~~~~~~~kg~~~~~~~~~~~~~~~~fV~f~~~~~A~~Ai~~lng~~i~g~~i~V~~a 72 (81)
+|++||-|.+ |++-++. .|..+| =|.++|...++..-|++.|++..+.|+.|+|+.|
T Consensus 154 ~~sKcGiI~~d~~t~epk~KlYrd~-~G~lKG--------------DaLc~y~K~ESVeLA~~ilDe~~~rg~~~rVerA 218 (382)
T KOG1548|consen 154 VMSKCGIIMRDPQTGEPKVKLYRDN-QGKLKG--------------DALCCYIKRESVELAIKILDEDELRGKKLRVERA 218 (382)
T ss_pred HHHhcceEeccCCCCCeeEEEEecC-CCCccC--------------ceEEEeecccHHHHHHHHhCcccccCcEEEEehh
Confidence 3567776653 4455554 466666 8999999999999999999999999999999988
Q ss_pred C
Q psy16913 73 R 73 (81)
Q Consensus 73 ~ 73 (81)
+
T Consensus 219 k 219 (382)
T KOG1548|consen 219 K 219 (382)
T ss_pred h
Confidence 4
No 99
>KOG2068|consensus
Probab=97.32 E-value=8.5e-05 Score=51.22 Aligned_cols=63 Identities=21% Similarity=0.359 Sum_probs=47.8
Q ss_pred ccCCceeeEEEEEecCCCCCcccccccccccccCcceEEEEEEcCHHHHHHHHHhhCCcEECCEEEEEEeeCCC
Q psy16913 2 FLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQIGMKRLKVQLKRPK 75 (81)
Q Consensus 2 F~~~G~i~~v~i~~~~~~~~~kg~~~~~~~~~~~~~~~~fV~f~~~~~A~~Ai~~lng~~i~g~~i~V~~a~~~ 75 (81)
|++||.|.++.+-.++....+.+ ..+-++|+|...++|..||...+|..++|+.++..+..++
T Consensus 101 fgqygki~ki~~~~~~S~~s~~~-----------~~~s~yITy~~~eda~rci~~v~g~~~dg~~lka~~gttk 163 (327)
T KOG2068|consen 101 FGQYGKINKIVKNKDPSSSSSSG-----------GTCSVYITYEEEEDADRCIDDVDGFVDDGRALKASLGTTK 163 (327)
T ss_pred ccccccceEEeecCCcccccCCC-----------CCCcccccccchHhhhhHHHHhhhHHhhhhhhHHhhCCCc
Confidence 78999999988776652111111 2234899999999999999999999999998877766554
No 100
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.13 E-value=0.00055 Score=35.48 Aligned_cols=33 Identities=18% Similarity=0.406 Sum_probs=26.8
Q ss_pred ccCCceeeEEEEEecCCCCCcccccccccccccCcceEEEEEEcCHHHHHHHH
Q psy16913 2 FLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAI 54 (81)
Q Consensus 2 F~~~G~i~~v~i~~~~~~~~~kg~~~~~~~~~~~~~~~~fV~f~~~~~A~~Ai 54 (81)
|.+||+|....+... .. +.+|.|.+..+|++|+
T Consensus 21 F~~fGeI~~~~~~~~------~~--------------~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 21 FASFGEIVDIYVPES------TN--------------WMYLKYKSRKDAEKAL 53 (53)
T ss_pred HHhcCCEEEEEcCCC------Cc--------------EEEEEECCHHHHHhhC
Confidence 778999999876621 22 8999999999999985
No 101
>KOG2202|consensus
Probab=97.07 E-value=0.00015 Score=48.53 Aligned_cols=55 Identities=15% Similarity=0.207 Sum_probs=45.4
Q ss_pred CCceeeEEEEEecCCCCCcccccccccccccCcceEEEEEEcCHHHHHHHHHhhCCcEECCEEEEEEeeC
Q psy16913 4 PFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQIGMKRLKVQLKR 73 (81)
Q Consensus 4 ~~G~i~~v~i~~~~~~~~~kg~~~~~~~~~~~~~~~~fV~f~~~~~A~~Ai~~lng~~i~g~~i~V~~a~ 73 (81)
+||+|.++.|..+. .-.-.| -.+|.|...++|++|++.||+.-+.|++|...+..
T Consensus 92 kygEiee~~Vc~Nl-~~hl~G--------------NVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~p 146 (260)
T KOG2202|consen 92 KYGEIEELNVCDNL-GDHLVG--------------NVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSP 146 (260)
T ss_pred Hhhhhhhhhhhccc-chhhhh--------------hhhhhcccHHHHHHHHHHHcCccccCCcceeeecC
Confidence 78998887655443 334456 79999999999999999999999999999988763
No 102
>KOG4210|consensus
Probab=96.93 E-value=0.00037 Score=47.46 Aligned_cols=61 Identities=25% Similarity=0.441 Sum_probs=54.7
Q ss_pred ccCCceeeEEEEEecCCCCCcccccccccccccCcceEEEEEEcCHHHHHHHHHhhCCcEECCEEEEEEeeCCCCC
Q psy16913 2 FLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQIGMKRLKVQLKRPKDA 77 (81)
Q Consensus 2 F~~~G~i~~v~i~~~~~~~~~kg~~~~~~~~~~~~~~~~fV~f~~~~~A~~Ai~~lng~~i~g~~i~V~~a~~~~~ 77 (81)
|..+|.|..++++.++.++..+| |++|.|....++..|+.. +...+.++++.+....++..
T Consensus 206 ~~~~~~i~~~r~~~~~~s~~~kg--------------~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 266 (285)
T KOG4210|consen 206 FVSSGEITSVRLPTDEESGDSKG--------------FAYVDFSAGNSKKLALND-QTRSIGGRPLRLEEDEPRPK 266 (285)
T ss_pred ccCcCcceeeccCCCCCccchhh--------------hhhhhhhhchhHHHHhhc-ccCcccCcccccccCCCCcc
Confidence 66789999999999999999999 999999999999999887 78889999999998877643
No 103
>KOG0106|consensus
Probab=96.93 E-value=0.00038 Score=45.74 Aligned_cols=36 Identities=25% Similarity=0.562 Sum_probs=32.6
Q ss_pred ceEEEEEEcCHHHHHHHHHhhCCcEECCEEEEEEee
Q psy16913 37 KCFGFVSFDNPASAHTAIQAMNGFQIGMKRLKVQLK 72 (81)
Q Consensus 37 ~~~~fV~f~~~~~A~~Ai~~lng~~i~g~~i~V~~a 72 (81)
.+++||+|...++|.+|+..|++..+.++.|.+..+
T Consensus 133 ~~~~~v~Fs~~~da~ra~~~l~~~~~~~~~l~~~~~ 168 (216)
T KOG0106|consen 133 RNFAFVEFSEQEDAKRALEKLDGKKLNGRRISVEKN 168 (216)
T ss_pred ccccceeehhhhhhhhcchhccchhhcCceeeeccc
Confidence 349999999999999999999999999999998443
No 104
>KOG1996|consensus
Probab=96.78 E-value=0.0043 Score=42.75 Aligned_cols=58 Identities=21% Similarity=0.241 Sum_probs=44.3
Q ss_pred ccCCceeeEEEEEecCCCCCcccccccccccccCcceEEEEEEcCHHHHHHHHHhhCCcEECCEEEEEEee
Q psy16913 2 FLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQIGMKRLKVQLK 72 (81)
Q Consensus 2 F~~~G~i~~v~i~~~~~~~~~kg~~~~~~~~~~~~~~~~fV~f~~~~~A~~Ai~~lng~~i~g~~i~V~~a 72 (81)
.++||.|..|-|.-++..-.... .--||+|...++|-+|+-.|||.-+.||.+...+-
T Consensus 307 ceKyg~V~~viifeip~~p~dea-------------vRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~Fy 364 (378)
T KOG1996|consen 307 CEKYGKVGNVIIFEIPSQPEDEA-------------VRIFVEFERVESAIKAVVDLNGRYFGGRVVSACFY 364 (378)
T ss_pred HHhhcceeeEEEEecCCCccchh-------------heeeeeeccHHHHHHHHHhcCCceecceeeeheec
Confidence 36799999987766642222111 14699999999999999999999999998876653
No 105
>KOG4206|consensus
Probab=96.30 E-value=0.0091 Score=39.36 Aligned_cols=54 Identities=24% Similarity=0.431 Sum_probs=42.7
Q ss_pred CccCCceeeEEEEEecCCCCCcccccccccccccCcceEEEEEEcCHHHHHHHHHhhCCcEEC-CEEEEEEeeC
Q psy16913 1 MFLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQIG-MKRLKVQLKR 73 (81)
Q Consensus 1 lF~~~G~i~~v~i~~~~~~~~~kg~~~~~~~~~~~~~~~~fV~f~~~~~A~~Ai~~lng~~i~-g~~i~V~~a~ 73 (81)
+|.+|.--..++++... ++ .|||+|.+...|..|.+.+.|..|- ...+.|.++.
T Consensus 166 lf~qf~g~keir~i~~~-----~~--------------iAfve~~~d~~a~~a~~~lq~~~it~~~~m~i~~a~ 220 (221)
T KOG4206|consen 166 LFEQFPGFKEIRLIPPR-----SG--------------IAFVEFLSDRQASAAQQALQGFKITKKNTMQITFAK 220 (221)
T ss_pred HHhhCcccceeEeccCC-----Cc--------------eeEEecchhhhhHHHhhhhccceeccCceEEecccC
Confidence 46667777777766544 34 9999999999999999999999987 7777877664
No 106
>KOG4211|consensus
Probab=95.88 E-value=0.02 Score=41.66 Aligned_cols=48 Identities=15% Similarity=0.221 Sum_probs=39.5
Q ss_pred EEecCCCCCcccccccccccccCcceEEEEEEcCHHHHHHHHHhhCCcEECCEEEEEEeeCCC
Q psy16913 13 VFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQIGMKRLKVQLKRPK 75 (81)
Q Consensus 13 i~~~~~~~~~kg~~~~~~~~~~~~~~~~fV~f~~~~~A~~Ai~~lng~~i~g~~i~V~~a~~~ 75 (81)
++..+.+|+..| =|||+|.+++|+++|++ .|...+..|-|.|=.+.+.
T Consensus 39 ~~~~r~~Gr~sG--------------eA~Ve~~seedv~~Alk-kdR~~mg~RYIEVf~~~~~ 86 (510)
T KOG4211|consen 39 LEIPRRNGRPSG--------------EAYVEFTSEEDVEKALK-KDRESMGHRYIEVFTAGGA 86 (510)
T ss_pred EEEeccCCCcCc--------------ceEEEeechHHHHHHHH-hhHHHhCCceEEEEccCCc
Confidence 445555788888 99999999999999998 6878888899998776544
No 107
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=95.84 E-value=0.022 Score=33.39 Aligned_cols=40 Identities=25% Similarity=0.438 Sum_probs=23.7
Q ss_pred CccCCceeeEEEEEecCCCCCcccccccccccccCcceEEEEEEcCHHHHHHHHHhhCCc
Q psy16913 1 MFLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGF 60 (81)
Q Consensus 1 lF~~~G~i~~v~i~~~~~~~~~kg~~~~~~~~~~~~~~~~fV~f~~~~~A~~Ai~~lng~ 60 (81)
+|++||+|..|.+..... -|+|-|.+++.|+.|+..+.-.
T Consensus 21 ~f~~~g~V~yVD~~~G~~--------------------~g~VRf~~~~~A~~a~~~~~~~ 60 (105)
T PF08777_consen 21 AFSQFGEVAYVDFSRGDT--------------------EGYVRFKTPEAAQKALEKLKEA 60 (105)
T ss_dssp HT-SS--EEEEE--TT-S--------------------EEEEEESS---HHHHHHHHHHT
T ss_pred HHHhcCCcceEEecCCCC--------------------EEEEEECCcchHHHHHHHHHhc
Confidence 378899888887665431 6899999999999999876433
No 108
>KOG4307|consensus
Probab=95.81 E-value=0.02 Score=43.56 Aligned_cols=33 Identities=18% Similarity=0.334 Sum_probs=31.2
Q ss_pred EEEEEEcCHHHHHHHHHhhCCcEECCEEEEEEe
Q psy16913 39 FGFVSFDNPASAHTAIQAMNGFQIGMKRLKVQL 71 (81)
Q Consensus 39 ~~fV~f~~~~~A~~Ai~~lng~~i~g~~i~V~~ 71 (81)
-|-|-|++.++|.+|...|++..|..+.+++.+
T Consensus 911 e~mvAfes~~eAr~A~~dl~~~~i~nr~V~l~i 943 (944)
T KOG4307|consen 911 ECMVAFESQEEARRASMDLDGQKIRNRVVSLRI 943 (944)
T ss_pred ceeEeecCHHHHHhhhhccccCcccceeEEEEe
Confidence 899999999999999999999999999988764
No 109
>KOG1190|consensus
Probab=95.74 E-value=0.014 Score=41.80 Aligned_cols=54 Identities=26% Similarity=0.437 Sum_probs=39.9
Q ss_pred CccCCceeeEEEEEecCCCCCcccccccccccccCcceEEEEEEcCHHHHHHHHHhhCCcEECC--EEEEEEee
Q psy16913 1 MFLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQIGM--KRLKVQLK 72 (81)
Q Consensus 1 lF~~~G~i~~v~i~~~~~~~~~kg~~~~~~~~~~~~~~~~fV~f~~~~~A~~Ai~~lng~~i~g--~~i~V~~a 72 (81)
+|++||.|..+--.. + .-|+ -|.|+|.+++.|+.|-..|+|.-|.. ..|+++++
T Consensus 170 vFS~fG~VlKIiTF~-K----nn~F-------------QALvQy~d~~sAq~AK~aLdGqnIyngcCtLrId~S 225 (492)
T KOG1190|consen 170 VFSKFGFVLKIITFT-K----NNGF-------------QALVQYTDAVSAQAAKLALDGQNIYNGCCTLRIDFS 225 (492)
T ss_pred HHhhcceeEEEEEEe-c----ccch-------------hhhhhccchhhHHHHHHhccCCcccCceeEEEeehh
Confidence 599999998764322 1 2331 38999999999999999999999874 45555554
No 110
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=95.62 E-value=0.028 Score=35.10 Aligned_cols=50 Identities=18% Similarity=0.189 Sum_probs=39.0
Q ss_pred cCCceeeEEEEEecCCCCCcccccccccccccCcceEEEEEEcCHHHHHHHHHhhCCcEECCEEEEEEeeCC
Q psy16913 3 LPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQIGMKRLKVQLKRP 74 (81)
Q Consensus 3 ~~~G~i~~v~i~~~~~~~~~kg~~~~~~~~~~~~~~~~fV~f~~~~~A~~Ai~~lng~~i~g~~i~V~~a~~ 74 (81)
+.||+|.+|.+.- + - -|.|+|.+..+|=+|+.++.. ...|..+.+.|-.+
T Consensus 112 s~fGpI~SVT~cG-----r--q--------------savVvF~d~~SAC~Av~Af~s-~~pgtm~qCsWqqr 161 (166)
T PF15023_consen 112 SVFGPIQSVTLCG-----R--Q--------------SAVVVFKDITSACKAVSAFQS-RAPGTMFQCSWQQR 161 (166)
T ss_pred HhcCCcceeeecC-----C--c--------------eEEEEehhhHHHHHHHHhhcC-CCCCceEEeecccc
Confidence 5789999886442 1 2 689999999999999998875 66788888887654
No 111
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=95.51 E-value=0.048 Score=29.79 Aligned_cols=33 Identities=30% Similarity=0.515 Sum_probs=20.7
Q ss_pred EEEEEEcCHHHHHHHHHhhCCcEECCEEEEEEee
Q psy16913 39 FGFVSFDNPASAHTAIQAMNGFQIGMKRLKVQLK 72 (81)
Q Consensus 39 ~~fV~f~~~~~A~~Ai~~lng~~i~g~~i~V~~a 72 (81)
|.||+-.. +.|+.++..|++..+.|++++|+.|
T Consensus 42 ~S~vev~~-~~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 42 FSFVEVPE-EVAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp -EEEEE-T-T-HHHHHHHHTT--SSS----EEE-
T ss_pred EEEEEECH-HHHHHHHHHhcCCCCCCeeEEEEEC
Confidence 89999876 4789999999999999999999875
No 112
>KOG4285|consensus
Probab=95.46 E-value=0.021 Score=39.46 Aligned_cols=50 Identities=20% Similarity=0.259 Sum_probs=38.1
Q ss_pred CccCCceeeEEEEEecCCCCCcccccccccccccCcceEEEEEEcCHHHHHHHHHhhCCcEECCEEE-EEEe
Q psy16913 1 MFLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQIGMKRL-KVQL 71 (81)
Q Consensus 1 lF~~~G~i~~v~i~~~~~~~~~kg~~~~~~~~~~~~~~~~fV~f~~~~~A~~Ai~~lng~~i~g~~i-~V~~ 71 (81)
+|++||.|++.... +.|+ +-+|.|.+..+|++||. -||..|+|-.+ -|..
T Consensus 216 ~F~~cG~Vvkhv~~-------~ngN-------------wMhirYssr~~A~KALs-kng~ii~g~vmiGVkp 266 (350)
T KOG4285|consen 216 LFSRCGEVVKHVTP-------SNGN-------------WMHIRYSSRTHAQKALS-KNGTIIDGDVMIGVKP 266 (350)
T ss_pred HHHhhCeeeeeecC-------CCCc-------------eEEEEecchhHHHHhhh-hcCeeeccceEEeeee
Confidence 48899998875432 2232 89999999999999998 79999998644 3544
No 113
>KOG1855|consensus
Probab=95.44 E-value=0.0041 Score=44.53 Aligned_cols=55 Identities=18% Similarity=0.239 Sum_probs=37.5
Q ss_pred CccCCceeeEEEEEec---CCCCC--cccccccccccccCcceEEEEEEcCHHHHHHHHHhhCCcE
Q psy16913 1 MFLPFGNVISSKVFID---RATNQ--SKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQ 61 (81)
Q Consensus 1 lF~~~G~i~~v~i~~~---~~~~~--~kg~~~~~~~~~~~~~~~~fV~f~~~~~A~~Ai~~lng~~ 61 (81)
||+.+|.|..|+|... +.+.+ +++.. +...+-+|+|+|+..+.|.+|.+.||-..
T Consensus 251 iFg~~G~IksIRIckPgaip~d~r~~~~~~~------~~~tk~~AlvEye~~~~A~KA~e~~~~e~ 310 (484)
T KOG1855|consen 251 IFGTVGSIKSIRICKPGAIPEDVRGFPKKYF------ELQTKECALVEYEEVEAARKARELLNPEQ 310 (484)
T ss_pred HhhcccceeeeeecCCCCCCcccccCCccch------hhhhhhhhhhhhhhhHHHHHHHHhhchhh
Confidence 6999999999998766 33222 22100 00122389999999999999999876443
No 114
>KOG0112|consensus
Probab=95.31 E-value=0.011 Score=45.70 Aligned_cols=55 Identities=25% Similarity=0.512 Sum_probs=44.9
Q ss_pred CccCCceeeEEEEEecCCCCCcccccccccccccCcceEEEEEEcCHHHHHHHHHhhCCcEECC--EEEEEEeeCCC
Q psy16913 1 MFLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQIGM--KRLKVQLKRPK 75 (81)
Q Consensus 1 lF~~~G~i~~v~i~~~~~~~~~kg~~~~~~~~~~~~~~~~fV~f~~~~~A~~Ai~~lng~~i~g--~~i~V~~a~~~ 75 (81)
.|..||+|..|.+-.. .- |++|.|++...|+.|+..|-|..+.+ +.+.|.++.+.
T Consensus 475 ~fd~fGpir~Idy~hg------q~--------------yayi~yes~~~aq~a~~~~rgap~G~P~~r~rvdla~~~ 531 (975)
T KOG0112|consen 475 EFDRFGPIRIIDYRHG------QP--------------YAYIQYESPPAAQAATHDMRGAPLGGPPRRLRVDLASPP 531 (975)
T ss_pred HhhccCcceeeecccC------Cc--------------ceeeecccCccchhhHHHHhcCcCCCCCcccccccccCC
Confidence 3788999988654322 12 99999999999999999999999985 77999998654
No 115
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=94.71 E-value=0.077 Score=28.72 Aligned_cols=29 Identities=17% Similarity=0.386 Sum_probs=26.4
Q ss_pred EEEEcCHHHHHHHHHhhCCcEECCEEEEE
Q psy16913 41 FVSFDNPASAHTAIQAMNGFQIGMKRLKV 69 (81)
Q Consensus 41 fV~f~~~~~A~~Ai~~lng~~i~g~~i~V 69 (81)
||.|.+.++|++|....||..+.+..|.+
T Consensus 37 YIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 37 YIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred EEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 79999999999999999999998887764
No 116
>KOG0128|consensus
Probab=94.61 E-value=0.01 Score=45.45 Aligned_cols=59 Identities=20% Similarity=0.219 Sum_probs=51.1
Q ss_pred CccCCceeeEEEEEecCCCCCcccccccccccccCcceEEEEEEcCHHHHHHHHHhhCCcEECCEEEEEEeeCC
Q psy16913 1 MFLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQIGMKRLKVQLKRP 74 (81)
Q Consensus 1 lF~~~G~i~~v~i~~~~~~~~~kg~~~~~~~~~~~~~~~~fV~f~~~~~A~~Ai~~lng~~i~g~~i~V~~a~~ 74 (81)
|++.+|.+.+..++..+ .|+++| .++|.|.++.++.+++..++...+..+.+.|+.+.|
T Consensus 756 l~~~~gn~~~~~~vt~r-~gkpkg--------------~a~v~y~~ea~~s~~~~s~d~~~~rE~~~~v~vsnp 814 (881)
T KOG0128|consen 756 LASKTGNVTSLRLVTVR-AGKPKG--------------KARVDYNTEADASRKVASVDVAGKRENNGEVQVSNP 814 (881)
T ss_pred hccccCCccccchhhhh-cccccc--------------ceeccCCCcchhhhhcccchhhhhhhcCccccccCC
Confidence 46788888888888776 788888 999999999999999999998888888888888655
No 117
>KOG2135|consensus
Probab=94.32 E-value=0.022 Score=41.36 Aligned_cols=53 Identities=23% Similarity=0.327 Sum_probs=43.3
Q ss_pred ccCCceeeEEEEEecCCCCCcccccccccccccCcceEEEEEEcCHHHHHHHHHhhCCcEECCEEEEEEeeCCC
Q psy16913 2 FLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQIGMKRLKVQLKRPK 75 (81)
Q Consensus 2 F~~~G~i~~v~i~~~~~~~~~kg~~~~~~~~~~~~~~~~fV~f~~~~~A~~Ai~~lng~~i~g~~i~V~~a~~~ 75 (81)
|.+||+|..|-+-... - -|.|+|....+|-.|.. ..+..|++|.|+|-|..+.
T Consensus 394 fA~fG~i~n~qv~~~~------~--------------~a~vTF~t~aeag~a~~-s~~avlnnr~iKl~whnps 446 (526)
T KOG2135|consen 394 FAQFGEIENIQVDYSS------L--------------HAVVTFKTRAEAGEAYA-SHGAVLNNRFIKLFWHNPS 446 (526)
T ss_pred hhhcCccccccccCch------h--------------hheeeeeccccccchhc-cccceecCceeEEEEecCC
Confidence 7889999988655442 1 57999999999977765 6899999999999998773
No 118
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=94.26 E-value=0.13 Score=33.13 Aligned_cols=37 Identities=35% Similarity=0.449 Sum_probs=28.3
Q ss_pred EEEEEEcCHHHHHHHHHhhC--CcEECCEEEEEEeeCCC
Q psy16913 39 FGFVSFDNPASAHTAIQAMN--GFQIGMKRLKVQLKRPK 75 (81)
Q Consensus 39 ~~fV~f~~~~~A~~Ai~~ln--g~~i~g~~i~V~~a~~~ 75 (81)
=..|.|.+.++|.+|...|+ +..+.|..+++-++.+.
T Consensus 33 Ri~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~~ 71 (184)
T PF04847_consen 33 RIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQPT 71 (184)
T ss_dssp EEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----S
T ss_pred EEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEcccc
Confidence 46899999999999999999 99999999999988543
No 119
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=94.03 E-value=0.18 Score=28.67 Aligned_cols=36 Identities=25% Similarity=0.520 Sum_probs=29.9
Q ss_pred CccCCceeeEEEEEecCCCCCcccccccccccccCcceEEEEEEcCHHHHHHHHHhhC
Q psy16913 1 MFLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMN 58 (81)
Q Consensus 1 lF~~~G~i~~v~i~~~~~~~~~kg~~~~~~~~~~~~~~~~fV~f~~~~~A~~Ai~~ln 58 (81)
||+.||.|. |..+.|. -|||...+.+.|..++..++
T Consensus 28 lFspfG~I~-VsWi~dT---------------------SAfV~l~~r~~~~~v~~~~~ 63 (87)
T PF08675_consen 28 LFSPFGQIY-VSWINDT---------------------SAFVALHNRDQAKVVMNTLK 63 (87)
T ss_dssp HCCCCCCEE-EEEECTT---------------------EEEEEECCCHHHHHHHHHHT
T ss_pred HhccCCcEE-EEEEcCC---------------------cEEEEeecHHHHHHHHHHhc
Confidence 589999984 5666665 79999999999999988776
No 120
>KOG4211|consensus
Probab=93.89 E-value=0.11 Score=38.00 Aligned_cols=36 Identities=25% Similarity=0.301 Sum_probs=29.7
Q ss_pred cceEEEEEEcCHHHHHHHHHhhCCcEECCEEEEEEee
Q psy16913 36 QKCFGFVSFDNPASAHTAIQAMNGFQIGMKRLKVQLK 72 (81)
Q Consensus 36 ~~~~~fV~f~~~~~A~~Ai~~lng~~i~g~~i~V~~a 72 (81)
++|-|||+|++.+.|+.|+. -|...|..|-|.|-.+
T Consensus 144 ~tGEAfVqF~sqe~ae~Al~-rhre~iGhRYIEvF~S 179 (510)
T KOG4211|consen 144 PTGEAFVQFESQESAEIALG-RHRENIGHRYIEVFRS 179 (510)
T ss_pred cccceEEEecCHHHHHHHHH-HHHHhhccceEEeehh
Confidence 33499999999999999998 5667888888887654
No 121
>KOG4574|consensus
Probab=93.01 E-value=0.043 Score=42.43 Aligned_cols=56 Identities=23% Similarity=0.328 Sum_probs=47.0
Q ss_pred CccCCceeeEEEEEecCCCCCcccccccccccccCcceEEEEEEcCHHHHHHHHHhhCCcEEC--CEEEEEEeeCCCC
Q psy16913 1 MFLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQIG--MKRLKVQLKRPKD 76 (81)
Q Consensus 1 lF~~~G~i~~v~i~~~~~~~~~kg~~~~~~~~~~~~~~~~fV~f~~~~~A~~Ai~~lng~~i~--g~~i~V~~a~~~~ 76 (81)
||+.||.|.++...++-. .+.|+|...+.|-.|++++.|+++- |-+.+|.+|+.-.
T Consensus 318 l~s~yg~v~s~wtlr~~N--------------------~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak~~~ 375 (1007)
T KOG4574|consen 318 LCSDYGSVASAWTLRDLN--------------------MALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAKTLP 375 (1007)
T ss_pred HHHhhcchhhheeccccc--------------------chhhhhHHHHHHHHhhhhhcCCcccccCCceeEEeccccc
Confidence 477899999988777642 7899999999999999999999865 7788999887644
No 122
>KOG2193|consensus
Probab=92.02 E-value=0.065 Score=38.80 Aligned_cols=41 Identities=27% Similarity=0.389 Sum_probs=36.2
Q ss_pred ceEEEEEEcCHHHHHHHHHhhCCcE-ECCEEEEEEeeCCCCC
Q psy16913 37 KCFGFVSFDNPASAHTAIQAMNGFQ-IGMKRLKVQLKRPKDA 77 (81)
Q Consensus 37 ~~~~fV~f~~~~~A~~Ai~~lng~~-i~g~~i~V~~a~~~~~ 77 (81)
.||+||.+.+...|.+|++.++|.. +.|+++.|....+++.
T Consensus 37 ~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv~kkq 78 (584)
T KOG2193|consen 37 SGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSVPKKQ 78 (584)
T ss_pred cceeeccCCchhhhhhhHHhhchhhhhcCceeeccchhhHHH
Confidence 3599999999999999999999875 7899999998877654
No 123
>KOG3152|consensus
Probab=92.01 E-value=0.036 Score=37.47 Aligned_cols=56 Identities=18% Similarity=0.206 Sum_probs=40.7
Q ss_pred CccCCceeeEEEEEecCCC--------CCcccccccccccccCcceEEEEEEcCHHHHHHHHHhhCCcEECCEE
Q psy16913 1 MFLPFGNVISSKVFIDRAT--------NQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQIGMKR 66 (81)
Q Consensus 1 lF~~~G~i~~v~i~~~~~~--------~~~kg~~~~~~~~~~~~~~~~fV~f~~~~~A~~Ai~~lng~~i~g~~ 66 (81)
||++||.|-+|-+-....+ |.... ..---|.|+|.+...|..+...||+..|.|+.
T Consensus 94 il~~yGeVGRvylqpE~~s~~~~r~~~~~n~~----------~~y~EGWvEF~~KrvAK~iAe~Lnn~~Iggkk 157 (278)
T KOG3152|consen 94 ILSQYGEVGRVYLQPEDDSKRAARKRKGGNYK----------KLYSEGWVEFISKRVAKRIAELLNNTPIGGKK 157 (278)
T ss_pred HHHhccccceEEecchhhHHHHHHhhcCCCcc----------ccchhHHHHHHHHHHHHHHHHHhCCCccCCCC
Confidence 4788999999988766544 11111 00002579999999999999999999999864
No 124
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=91.13 E-value=1.2 Score=26.36 Aligned_cols=41 Identities=15% Similarity=0.280 Sum_probs=32.3
Q ss_pred eeEEEEEecCCCCCcccccccccccccCcceEEEEEEcCHHHHHHHHHhhCCcEECC
Q psy16913 8 VISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQIGM 64 (81)
Q Consensus 8 i~~v~i~~~~~~~~~kg~~~~~~~~~~~~~~~~fV~f~~~~~A~~Ai~~lng~~i~g 64 (81)
|..++|++|.. ..+- -+.+.|.+.++|+.=...+||+.+..
T Consensus 41 i~~~riird~~--pnry--------------mVLikF~~~~~Ad~Fy~~fNGk~Fns 81 (110)
T PF07576_consen 41 IEHIRIIRDGT--PNRY--------------MVLIKFRDQESADEFYEEFNGKPFNS 81 (110)
T ss_pred EEEEEEeeCCC--CceE--------------EEEEEECCHHHHHHHHHHhCCCccCC
Confidence 66778887642 2333 68899999999999999999998873
No 125
>KOG4660|consensus
Probab=90.82 E-value=0.57 Score=34.74 Aligned_cols=41 Identities=17% Similarity=0.264 Sum_probs=32.5
Q ss_pred CcceEEEEEEcCHHHHHHHHHhhCCcEEC----CEEEEEEeeCCC
Q psy16913 35 NQKCFGFVSFDNPASAHTAIQAMNGFQIG----MKRLKVQLKRPK 75 (81)
Q Consensus 35 ~~~~~~fV~f~~~~~A~~Ai~~lng~~i~----g~~i~V~~a~~~ 75 (81)
-+.|||||-|-+++++..+.++.||+.+. .+...+.||+-+
T Consensus 429 cNvGYAFINm~sp~ai~~F~kAFnGk~W~~FnS~Kia~itYArIQ 473 (549)
T KOG4660|consen 429 CNVGYAFINMTSPEAIIRFYKAFNGKKWEKFNSEKIASITYARIQ 473 (549)
T ss_pred cccceeEEeecCHHHHHHHHHHHcCCchhhhcceeeeeeehhhhh
Confidence 34559999999999999999999999875 355567776543
No 126
>KOG1365|consensus
Probab=90.78 E-value=0.22 Score=35.78 Aligned_cols=35 Identities=17% Similarity=0.149 Sum_probs=28.9
Q ss_pred ceEEEEEEcCHHHHHHHHHhhCCcEECCEEEEEEe
Q psy16913 37 KCFGFVSFDNPASAHTAIQAMNGFQIGMKRLKVQL 71 (81)
Q Consensus 37 ~~~~fV~f~~~~~A~~Ai~~lng~~i~g~~i~V~~ 71 (81)
+|-|||+|.+.++|..|....+.+....|.|.|--
T Consensus 324 SGeAFIqm~nae~a~aaaqk~hk~~mk~RYiEvfp 358 (508)
T KOG1365|consen 324 SGEAFIQMRNAERARAAAQKCHKKLMKSRYIEVFP 358 (508)
T ss_pred ChhhhhhhhhhHHHHHHHHHHHHhhcccceEEEee
Confidence 33999999999999999988887777788887643
No 127
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=89.02 E-value=0.6 Score=31.73 Aligned_cols=35 Identities=26% Similarity=0.344 Sum_probs=26.0
Q ss_pred EEEEEcCHHHHHHHHHhhCCcEECCEEEEEEeeCCCC
Q psy16913 40 GFVSFDNPASAHTAIQAMNGFQIGMKRLKVQLKRPKD 76 (81)
Q Consensus 40 ~fV~f~~~~~A~~Ai~~lng~~i~g~~i~V~~a~~~~ 76 (81)
|||+|.+..+|+.|++.+.... .+.+.+..|.+.+
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~~--~~~~~v~~APeP~ 35 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSKR--PNSWRVSPAPEPD 35 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcCC--CCCceEeeCCCcc
Confidence 6999999999999999655333 3556777775544
No 128
>KOG1457|consensus
Probab=88.77 E-value=0.3 Score=32.79 Aligned_cols=28 Identities=18% Similarity=0.316 Sum_probs=24.5
Q ss_pred cceEEEEEEcCHHHHHHHHHhhCCcEEC
Q psy16913 36 QKCFGFVSFDNPASAHTAIQAMNGFQIG 63 (81)
Q Consensus 36 ~~~~~fV~f~~~~~A~~Ai~~lng~~i~ 63 (81)
..+.+|++|++.+.|..|+..|.|..|.
T Consensus 247 g~~vaf~~~~~~~~at~am~~lqg~~~s 274 (284)
T KOG1457|consen 247 GMPVAFADFEEIEQATDAMNHLQGNLLS 274 (284)
T ss_pred CcceEeecHHHHHHHHHHHHHhhcceec
Confidence 3458999999999999999999998874
No 129
>KOG4849|consensus
Probab=87.62 E-value=0.43 Score=33.97 Aligned_cols=48 Identities=19% Similarity=0.283 Sum_probs=39.1
Q ss_pred eeEEEEEecCCCCCcccccccccccccCcceEEEEEEcCHHHHHHHHHhhCCcEECCEEEEE
Q psy16913 8 VISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQIGMKRLKV 69 (81)
Q Consensus 8 i~~v~i~~~~~~~~~kg~~~~~~~~~~~~~~~~fV~f~~~~~A~~Ai~~lng~~i~g~~i~V 69 (81)
+.+++...++.+|++|| ||+|...+.....+.++.|.-+.|.|+.=.|
T Consensus 109 ~~dmKFFENR~NGQSKG--------------~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V 156 (498)
T KOG4849|consen 109 FADMKFFENRTNGQSKG--------------YALLVLNSDAAVKQTMEILPTKTIHGQSPTV 156 (498)
T ss_pred HhhhhhhhcccCCcccc--------------eEEEEecchHHHHHHHHhcccceecCCCCee
Confidence 34455666778899999 9999999999899999999999999865443
No 130
>KOG2416|consensus
Probab=85.99 E-value=1.3 Score=33.58 Aligned_cols=36 Identities=22% Similarity=0.292 Sum_probs=31.6
Q ss_pred EEEEEEcCHHHHHHHHHhhCCcEEC---CEEEEEEeeCC
Q psy16913 39 FGFVSFDNPASAHTAIQAMNGFQIG---MKRLKVQLKRP 74 (81)
Q Consensus 39 ~~fV~f~~~~~A~~Ai~~lng~~i~---g~~i~V~~a~~ 74 (81)
.|||.|.+.++|...+.+|||..+- .+.|.+.|...
T Consensus 483 hCyV~yss~eEA~atr~AlhnV~WP~sNPK~L~adf~~~ 521 (718)
T KOG2416|consen 483 HCYVSYSSVEEAAATREALHNVQWPPSNPKHLIADFVRA 521 (718)
T ss_pred ceeEecccHHHHHHHHHHHhccccCCCCCceeEeeecch
Confidence 7999999999999999999998874 68888888754
No 131
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=85.22 E-value=2.7 Score=22.41 Aligned_cols=19 Identities=26% Similarity=0.274 Sum_probs=16.6
Q ss_pred EEEEEEcCHHHHHHHHHhh
Q psy16913 39 FGFVSFDNPASAHTAIQAM 57 (81)
Q Consensus 39 ~~fV~f~~~~~A~~Ai~~l 57 (81)
-|-|.|.+++.|.+|+.+|
T Consensus 44 ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 44 SCNVVFKDEETAARALVAL 62 (62)
T ss_pred cEEEEECCHHHHHHHHHcC
Confidence 5779999999999999764
No 132
>KOG0128|consensus
Probab=83.48 E-value=0.17 Score=39.17 Aligned_cols=45 Identities=20% Similarity=0.361 Sum_probs=30.4
Q ss_pred ccCCceeeEEEEEecCCCCCcccccccccccccCcceEEEEEEcCHHHHHHHHHhhCCc
Q psy16913 2 FLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGF 60 (81)
Q Consensus 2 F~~~G~i~~v~i~~~~~~~~~kg~~~~~~~~~~~~~~~~fV~f~~~~~A~~Ai~~lng~ 60 (81)
|+.+|.+..+.+..-...++.+| +||++|..++++.+||.-.++.
T Consensus 688 ~~~~~~~e~vqi~~h~n~~~~rG--------------~~Y~~F~~~~~~~aaV~f~d~~ 732 (881)
T KOG0128|consen 688 FSPSGTIEVVQIVIHKNEKRFRG--------------KAYVEFLKPEHAGAAVAFRDSC 732 (881)
T ss_pred cCccchhhhHHHHHHhhcccccc--------------ceeeEeecCCchhhhhhhhhhh
Confidence 44555555544433334566666 9999999999999999844433
No 133
>KOG4676|consensus
Probab=81.83 E-value=1.3 Score=31.98 Aligned_cols=59 Identities=19% Similarity=0.194 Sum_probs=37.8
Q ss_pred CccCCceeeEEEEEecCCCCCcccccccccccccCcceEEEEEEcCHHHHHHHHHhhCCcEECCEEEEEEe
Q psy16913 1 MFLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQIGMKRLKVQL 71 (81)
Q Consensus 1 lF~~~G~i~~v~i~~~~~~~~~kg~~~~~~~~~~~~~~~~fV~f~~~~~A~~Ai~~lng~~i~g~~i~V~~ 71 (81)
||+-.|+|..+.+..... .++. .-....|||-|.++..+..| +.|..+.+-++-|.|-.
T Consensus 27 lFg~lGkI~elrlyp~~~--d~~~---------pv~sRtcyVkf~d~~sv~va-QhLtntvfvdraliv~p 85 (479)
T KOG4676|consen 27 LFGNLGKIPELRLYPNVD--DSKI---------PVISRTCYVKFLDSQSVTVA-QHLTNTVFVDRALIVRP 85 (479)
T ss_pred HHhhccccccccccCCCC--CccC---------cceeeeEEEeccCCcceeHH-hhhccceeeeeeEEEEe
Confidence 578888998887764321 1111 01122799999999888877 45666776666665543
No 134
>KOG0115|consensus
Probab=81.22 E-value=1.2 Score=30.31 Aligned_cols=42 Identities=21% Similarity=0.326 Sum_probs=34.4
Q ss_pred ccCCceeeEEEEEecCCCCCcccccccccccccCcceEEEEEEcCHHHHHHHHHhhC
Q psy16913 2 FLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMN 58 (81)
Q Consensus 2 F~~~G~i~~v~i~~~~~~~~~kg~~~~~~~~~~~~~~~~fV~f~~~~~A~~Ai~~ln 58 (81)
|+.||+|.+..++.|. .+++.+ -++|.|...-.|.+|+...+
T Consensus 52 f~~fg~~e~av~~vD~-r~k~t~--------------eg~v~~~~k~~a~~a~rr~~ 93 (275)
T KOG0115|consen 52 FRRFGPIERAVAKVDD-RGKPTR--------------EGIVEFAKKPNARKAARRCR 93 (275)
T ss_pred hhhcCccchheeeecc-cccccc--------------cchhhhhcchhHHHHHHHhc
Confidence 7889999998887775 566656 78999999999999888764
No 135
>KOG4210|consensus
Probab=80.81 E-value=1.2 Score=30.47 Aligned_cols=36 Identities=11% Similarity=0.001 Sum_probs=26.6
Q ss_pred eEEEEEEcCHHHHHHHHHhhCCcEECCEEEEEEeeC
Q psy16913 38 CFGFVSFDNPASAHTAIQAMNGFQIGMKRLKVQLKR 73 (81)
Q Consensus 38 ~~~fV~f~~~~~A~~Ai~~lng~~i~g~~i~V~~a~ 73 (81)
|++.+.|...+.+..|+...-...+.+..+...+..
T Consensus 131 ~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~~~dl~~ 166 (285)
T KOG4210|consen 131 GGLSVHFAGKSQFFAALEESGSKVLDGNKGEKDLNT 166 (285)
T ss_pred cceeeccccHHHHHHHHHhhhccccccccccCcccc
Confidence 399999999999999998544456666665554443
No 136
>KOG1365|consensus
Probab=74.13 E-value=8.1 Score=28.06 Aligned_cols=20 Identities=25% Similarity=0.255 Sum_probs=17.6
Q ss_pred cceEEEEEEcCHHHHHHHHH
Q psy16913 36 QKCFGFVSFDNPASAHTAIQ 55 (81)
Q Consensus 36 ~~~~~fV~f~~~~~A~~Ai~ 55 (81)
++|=|||.|..+++|+.|+.
T Consensus 205 pTGdAFvlfa~ee~aq~aL~ 224 (508)
T KOG1365|consen 205 PTGDAFVLFACEEDAQFALR 224 (508)
T ss_pred cccceEEEecCHHHHHHHHH
Confidence 33499999999999999987
No 137
>KOG4307|consensus
Probab=72.25 E-value=2 Score=33.24 Aligned_cols=33 Identities=27% Similarity=0.397 Sum_probs=26.9
Q ss_pred EEEEEEcCHHHHHHHHHhhCCcEECCEEEEEEe
Q psy16913 39 FGFVSFDNPASAHTAIQAMNGFQIGMKRLKVQL 71 (81)
Q Consensus 39 ~~fV~f~~~~~A~~Ai~~lng~~i~g~~i~V~~ 71 (81)
-|||.|..++++.+|...-..+-+..+.|+|.-
T Consensus 478 ~afv~F~~~~a~~~a~~~~~k~y~G~r~irv~s 510 (944)
T KOG4307|consen 478 AAFVAFIHPTAPLTASSVKTKFYPGHRIIRVDS 510 (944)
T ss_pred hhhheeccccccchhhhcccccccCceEEEeec
Confidence 899999999999999876665556678888864
No 138
>PF08206 OB_RNB: Ribonuclease B OB domain; InterPro: IPR013223 This domain includes the N-terminal OB domain found in ribonuclease B proteins in one or two copies.; PDB: 2ID0_D 2IX1_A 2IX0_A.
Probab=68.52 E-value=1.1 Score=23.19 Aligned_cols=38 Identities=24% Similarity=0.384 Sum_probs=16.7
Q ss_pred CcceEEEEEEcC-HHHHHHHHHhhCCcEECCEEEEEEeeC
Q psy16913 35 NQKCFGFVSFDN-PASAHTAIQAMNGFQIGMKRLKVQLKR 73 (81)
Q Consensus 35 ~~~~~~fV~f~~-~~~A~~Ai~~lng~~i~g~~i~V~~a~ 73 (81)
++.|||||...+ .+|.--.-..|++. ++|-.+.|....
T Consensus 6 ~~~GfGFv~~~~~~~DifIp~~~l~~A-~~gD~V~v~i~~ 44 (58)
T PF08206_consen 6 HPKGFGFVIPDDGGEDIFIPPRNLNGA-MDGDKVLVRITP 44 (58)
T ss_dssp -SSS-EEEEECT-TEEEEE-HHHHTTS--TT-EEEEEEEE
T ss_pred EcCCCEEEEECCCCCCEEECHHHHCCC-CCCCEEEEEEec
Confidence 345599999887 22211122334432 344445555554
No 139
>KOG0804|consensus
Probab=61.83 E-value=17 Score=26.78 Aligned_cols=42 Identities=21% Similarity=0.349 Sum_probs=32.9
Q ss_pred eeeEEEEEecCCCCCcccccccccccccCcceEEEEEEcCHHHHHHHHHhhCCcEECC
Q psy16913 7 NVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQIGM 64 (81)
Q Consensus 7 ~i~~v~i~~~~~~~~~kg~~~~~~~~~~~~~~~~fV~f~~~~~A~~Ai~~lng~~i~g 64 (81)
.|.++++++|.... += -..+.|.+.++|..--+++||..+..
T Consensus 101 ~I~~irivRd~~pn--ry--------------mvLIkFr~q~da~~Fy~efNGk~Fn~ 142 (493)
T KOG0804|consen 101 QISDIRIVRDGMPN--RY--------------MVLIKFRDQADADTFYEEFNGKQFNS 142 (493)
T ss_pred hhheeEEeecCCCc--eE--------------EEEEEeccchhHHHHHHHcCCCcCCC
Confidence 47788889865321 11 47899999999999999999998873
No 140
>PF03439 Spt5-NGN: Early transcription elongation factor of RNA pol II, NGN section; InterPro: IPR005100 Spt5p and prokaryotic NusG are shown to contain a novel 'NGN' domain. The combined NGN and KOW motif regions of Spt5 form the binding domain with Spt4 []. Spt5 complexes with Spt4 as a 1:1 heterodimer snf this Spt5-Spt4 complex regulates early transcription elongation by RNA polymerase II and has an imputed role in pre-mRNA processing via its physical association with mRNA capping enzymes. The Schizosaccharomyces pombe core Spt5-Spt4 complex is a heterodimer bearing a trypsin-resistant Spt4-binding domain within the Spt5 subunit []. ; PDB: 3H7H_B 3QQC_D 3P8B_B 2EXU_A.
Probab=59.51 E-value=19 Score=19.94 Aligned_cols=25 Identities=16% Similarity=0.337 Sum_probs=20.1
Q ss_pred ceEEEEEEcCHHHHHHHHHhhCCcE
Q psy16913 37 KCFGFVSFDNPASAHTAIQAMNGFQ 61 (81)
Q Consensus 37 ~~~~fV~f~~~~~A~~Ai~~lng~~ 61 (81)
+||-||+=.++.+...|++.+.+..
T Consensus 44 kGyIyVEA~~~~~V~~ai~gi~~i~ 68 (84)
T PF03439_consen 44 KGYIYVEAERESDVKEAIRGIRHIR 68 (84)
T ss_dssp TSEEEEEESSHHHHHHHHTT-TTEE
T ss_pred ceEEEEEeCCHHHHHHHHhccccee
Confidence 3499999999999999998776543
No 141
>KOG0129|consensus
Probab=58.97 E-value=19 Score=26.83 Aligned_cols=39 Identities=31% Similarity=0.321 Sum_probs=34.4
Q ss_pred CCceeeEEEEEecCCCCCcccccccccccccCcceEEEEEEcCHHHHHHHHHh
Q psy16913 4 PFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQA 56 (81)
Q Consensus 4 ~~G~i~~v~i~~~~~~~~~kg~~~~~~~~~~~~~~~~fV~f~~~~~A~~Ai~~ 56 (81)
-||-|.-+-|-+|++-+-++| -|-|+|.+...--+||.+
T Consensus 394 lyGgV~yaGIDtD~k~KYPkG--------------aGRVtFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 394 LFGGVLYVGIDTDPKLKYPKG--------------AGRVTFSNQQAYIKAISA 432 (520)
T ss_pred hcCceEEEEeccCcccCCCCC--------------cceeeecccHHHHHHHhh
Confidence 589999999999987778888 899999999988889874
No 142
>KOG4019|consensus
Probab=57.13 E-value=23 Score=23.10 Aligned_cols=40 Identities=23% Similarity=0.244 Sum_probs=32.2
Q ss_pred cceEEEEEEcCHHHHHHHHHhhCCcEECCE-EEEEEeeCCC
Q psy16913 36 QKCFGFVSFDNPASAHTAIQAMNGFQIGMK-RLKVQLKRPK 75 (81)
Q Consensus 36 ~~~~~fV~f~~~~~A~~Ai~~lng~~i~g~-~i~V~~a~~~ 75 (81)
+-+.--|.|.+++.|..|...++++.+.|+ .++.=++++.
T Consensus 50 sfrrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k~yfaQ~~ 90 (193)
T KOG4019|consen 50 SFRRVRINFSNPEAAADARIKLHSTSFNGKNELKLYFAQPG 90 (193)
T ss_pred hhceeEEeccChhHHHHHHHHhhhcccCCCceEEEEEccCC
Confidence 334667899999999999999999999988 7776666553
No 143
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=56.79 E-value=18 Score=19.26 Aligned_cols=27 Identities=15% Similarity=0.261 Sum_probs=21.7
Q ss_pred EEEEEEcCHHHHHHHHHhhCCcEECCE
Q psy16913 39 FGFVSFDNPASAHTAIQAMNGFQIGMK 65 (81)
Q Consensus 39 ~~fV~f~~~~~A~~Ai~~lng~~i~g~ 65 (81)
+.++.|.+..+|-+|-+.|....+..+
T Consensus 3 ~~~i~F~st~~a~~~ek~lk~~gi~~~ 29 (73)
T PF11823_consen 3 YYLITFPSTHDAMKAEKLLKKNGIPVR 29 (73)
T ss_pred eEEEEECCHHHHHHHHHHHHHCCCcEE
Confidence 789999999999998887776655444
No 144
>KOG0129|consensus
Probab=56.34 E-value=80 Score=23.74 Aligned_cols=20 Identities=20% Similarity=0.446 Sum_probs=15.8
Q ss_pred eEEEEEEcCHHHHHHHHHhh
Q psy16913 38 CFGFVSFDNPASAHTAIQAM 57 (81)
Q Consensus 38 ~~~fV~f~~~~~A~~Ai~~l 57 (81)
||.|+.|+++...+.-+.+.
T Consensus 307 ~YvflvFe~E~sV~~Ll~aC 326 (520)
T KOG0129|consen 307 GYVFLVFEDERSVQSLLSAC 326 (520)
T ss_pred cEEEEEecchHHHHHHHHHH
Confidence 59999999998887655543
No 145
>PF07530 PRE_C2HC: Associated with zinc fingers; InterPro: IPR006579 This domain is present in proteins found exclusively in the arthropods, including a number of Drosophila species, the silk moth and the gypsy moth. These proteins are possibly involved in RNA binding or single strand DNA binding.
Probab=51.64 E-value=31 Score=18.46 Aligned_cols=35 Identities=17% Similarity=0.218 Sum_probs=23.5
Q ss_pred EEEEEEcCHHHHHHHHHhhCCcEECCEEEEEEeeCCCC
Q psy16913 39 FGFVSFDNPASAHTAIQAMNGFQIGMKRLKVQLKRPKD 76 (81)
Q Consensus 39 ~~fV~f~~~~~A~~Ai~~lng~~i~g~~i~V~~a~~~~ 76 (81)
.-||+.....+.. +.++=..+.+..++|+....+.
T Consensus 32 mf~veL~p~~~~k---~i~~Ik~l~~~~V~vE~~~k~~ 66 (68)
T PF07530_consen 32 MFFVELEPKPNNK---EIYKIKTLCGQRVKVERPRKRR 66 (68)
T ss_pred EEEEeeccCcccc---ceeehHhhCCeEEEEecCCCCC
Confidence 7788887765533 3355567788888888765544
No 146
>KOG2187|consensus
Probab=51.29 E-value=8.8 Score=28.69 Aligned_cols=37 Identities=30% Similarity=0.489 Sum_probs=32.6
Q ss_pred eEEEEEEcCHHHHHHHHHhhCCcEECCEEEEEEeeCC
Q psy16913 38 CFGFVSFDNPASAHTAIQAMNGFQIGMKRLKVQLKRP 74 (81)
Q Consensus 38 ~~~fV~f~~~~~A~~Ai~~lng~~i~g~~i~V~~a~~ 74 (81)
.++++.|+++.++.+|+..++|....+..+.+..+.+
T Consensus 64 ~~~~~~~et~~~~~ka~~~v~g~~~k~~~~~~~~~~~ 100 (534)
T KOG2187|consen 64 KYAYVTFETPSDAGKAINLVDGLLYKGFILRVQLGAT 100 (534)
T ss_pred CceEEEEeccchhhhHHHHHhhhhhhcchhhhhhccc
Confidence 5899999999999999999999999888877776644
No 147
>KOG2591|consensus
Probab=48.23 E-value=38 Score=25.87 Aligned_cols=28 Identities=14% Similarity=0.262 Sum_probs=19.5
Q ss_pred EEEEEcCHHHHHHHHHhhCC--cEECCEEE
Q psy16913 40 GFVSFDNPASAHTAIQAMNG--FQIGMKRL 67 (81)
Q Consensus 40 ~fV~f~~~~~A~~Ai~~lng--~~i~g~~i 67 (81)
-||+|++..||+.|.+.|.- +.|.|++|
T Consensus 215 WyITfesd~DAQqAykylreevk~fqgKpI 244 (684)
T KOG2591|consen 215 WYITFESDTDAQQAYKYLREEVKTFQGKPI 244 (684)
T ss_pred eEEEeecchhHHHHHHHHHHHHHhhcCcch
Confidence 48999999999998765531 23445444
No 148
>KOG0112|consensus
Probab=46.37 E-value=4.2 Score=32.20 Aligned_cols=57 Identities=21% Similarity=0.217 Sum_probs=40.6
Q ss_pred CccCCceeeEEEEEecCCCCCcccccccccccccCcceEEEEEEcCHHHHHHHHHhhCCcEECCEEEEEEee
Q psy16913 1 MFLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQIGMKRLKVQLK 72 (81)
Q Consensus 1 lF~~~G~i~~v~i~~~~~~~~~kg~~~~~~~~~~~~~~~~fV~f~~~~~A~~Ai~~lng~~i~g~~i~V~~a 72 (81)
.|..+|.|.+|.|-+.+. +.-.. |+||.|.+...+-.|...+.+..|..-.+++.+.
T Consensus 392 af~e~gkve~VDiKtP~~-~~esa--------------~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~glG 448 (975)
T KOG0112|consen 392 AFDESGKVEEVDIKTPHI-KTESA--------------YAFVSLLNTDMTPSAKFEESGPLIGNGTHRIGLG 448 (975)
T ss_pred hhhhhccccccccccCCC-Ccccc--------------hhhhhhhccccCcccchhhcCCccccCccccccc
Confidence 377889998887765542 22222 8999999999999999888888776444444444
No 149
>COG5594 Uncharacterized integral membrane protein [Function unknown]
Probab=45.34 E-value=35 Score=27.00 Aligned_cols=29 Identities=28% Similarity=0.229 Sum_probs=21.8
Q ss_pred cceEEEEEEcCHHHHHHHHHhhCCcEECC
Q psy16913 36 QKCFGFVSFDNPASAHTAIQAMNGFQIGM 64 (81)
Q Consensus 36 ~~~~~fV~f~~~~~A~~Ai~~lng~~i~g 64 (81)
+...|||+|++..+|+.|.+..-+..+.+
T Consensus 356 ~~~~~FItFkSq~~Aq~~aQ~~~~sr~~~ 384 (827)
T COG5594 356 PTKSGFITFKSQASAQIAAQSQIYSRVLG 384 (827)
T ss_pred ccccEEEEEehhHHHHHHHHhhhhhhhhc
Confidence 34589999999999999988753444433
No 150
>PF05573 NosL: NosL; InterPro: IPR008719 NosL is one of the accessory proteins of the nos (nitrous oxide reductase) gene cluster. NosL is a monomeric protein of 18,540 MW that specifically and stoichiometrically binds Cu(I). The copper ion in NosL is ligated by a Cys residue, and one Met and one His are thought to serve as the other ligands. It is possible that NosL is a copper chaperone involved in metallocentre assembly []. This entry also contains HTH-type transcriptional repressors, including YcnK. YcnK may act as a negative transcriptional regulator of YcnJ in the presence of copper and may use copper as a corepressor. The gene, ycnK, is significantly induced under copper-limiting conditions.; PDB: 2HQ3_A 2HPU_A.
Probab=40.60 E-value=32 Score=21.04 Aligned_cols=25 Identities=12% Similarity=0.192 Sum_probs=17.5
Q ss_pred CcceEEEEEEcCHHHHHHHHHhhCC
Q psy16913 35 NQKCFGFVSFDNPASAHTAIQAMNG 59 (81)
Q Consensus 35 ~~~~~~fV~f~~~~~A~~Ai~~lng 59 (81)
.+.|...+-|.+.++|++-.+...|
T Consensus 112 ~pMg~~~~aF~~~~~A~~F~~~~GG 136 (149)
T PF05573_consen 112 GPMGPDLIAFASKEDAEAFAKEHGG 136 (149)
T ss_dssp -TTS--EEEES-HHHHHHHHHHTEE
T ss_pred CCCCCcccccCCHHHHHHHHHHcCC
Confidence 6778999999999999998886533
No 151
>KOG2318|consensus
Probab=39.35 E-value=56 Score=25.05 Aligned_cols=33 Identities=18% Similarity=0.340 Sum_probs=27.2
Q ss_pred EEEEEEcCHHHHHHHHHhhCCcEECCEEEEEEe
Q psy16913 39 FGFVSFDNPASAHTAIQAMNGFQIGMKRLKVQL 71 (81)
Q Consensus 39 ~~fV~f~~~~~A~~Ai~~lng~~i~g~~i~V~~ 71 (81)
||.|+|.+.+.|.......+|..+...-..+.+
T Consensus 270 yAVvecDsi~tA~~vYe~CDG~EfEsS~~~~DL 302 (650)
T KOG2318|consen 270 YAVVECDSIETAKAVYEECDGIEFESSANKLDL 302 (650)
T ss_pred EEEEEecCchHHHHHHHhcCcceeccccceeee
Confidence 589999999999999999999998854444443
No 152
>PRK08559 nusG transcription antitermination protein NusG; Validated
Probab=37.57 E-value=55 Score=20.11 Aligned_cols=24 Identities=17% Similarity=0.279 Sum_probs=20.0
Q ss_pred ceEEEEEEcCHHHHHHHHHhhCCc
Q psy16913 37 KCFGFVSFDNPASAHTAIQAMNGF 60 (81)
Q Consensus 37 ~~~~fV~f~~~~~A~~Ai~~lng~ 60 (81)
.||-||+....+++..++..+.+.
T Consensus 46 pGYVfVe~~~~~~~~~~i~~v~~v 69 (153)
T PRK08559 46 KGYVLVEAESKGAVEEAIRGIPHV 69 (153)
T ss_pred CcEEEEEEEChHHHHHHHhcCCCE
Confidence 349999999889999999887753
No 153
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=35.83 E-value=59 Score=20.58 Aligned_cols=35 Identities=14% Similarity=0.208 Sum_probs=26.6
Q ss_pred EEEEEEcCHHHHHHHHHhhCCcEECC-----EEEEEEeeC
Q psy16913 39 FGFVSFDNPASAHTAIQAMNGFQIGM-----KRLKVQLKR 73 (81)
Q Consensus 39 ~~fV~f~~~~~A~~Ai~~lng~~i~g-----~~i~V~~a~ 73 (81)
-|||.|.+.+++..-...++|+.+.+ .+-.|++|-
T Consensus 57 RaYi~F~~~~~~~~F~~~~~g~~F~D~kg~~~~~~VE~Ap 96 (176)
T PF03467_consen 57 RAYINFKNPEDLLEFRDRFDGHVFVDSKGNEYPAVVEFAP 96 (176)
T ss_dssp EEEEEESSCHHHHHHHHHCTTEEEE-TTS-EEEEEEEE-S
T ss_pred EEEEEeCCHHHHHHHHHhcCCcEEECCCCCCcceeEEEcc
Confidence 58999999999999999999987642 344566663
No 154
>smart00596 PRE_C2HC PRE_C2HC domain.
Probab=35.68 E-value=63 Score=17.61 Aligned_cols=52 Identities=17% Similarity=0.204 Sum_probs=31.1
Q ss_pred eeEEEEEecCCCCCcccccccccccccCcceEEEEEEcCHHHHHHHHHhhCCcEECCEEEEEEeeCCCC
Q psy16913 8 VISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQIGMKRLKVQLKRPKD 76 (81)
Q Consensus 8 i~~v~i~~~~~~~~~kg~~~~~~~~~~~~~~~~fV~f~~~~~A~~Ai~~lng~~i~g~~i~V~~a~~~~ 76 (81)
+..+.-|..+.++.+.. .-+|+.....+-.. .++=+.+.|+++.|+....+.
T Consensus 15 v~~i~~m~~~~~r~P~n--------------mf~vel~~~~~~~~---Il~ik~Lg~~~V~VEr~~k~~ 66 (69)
T smart00596 15 VLFIHNMLNRDTKNPQN--------------MFEVELVPAANGKE---ILNIKTLGGQRVTVERPHKRK 66 (69)
T ss_pred eeEEEcccccCCCCcce--------------eEEEEeeecCCCcc---eEeehhhCCeeEEEecCcccC
Confidence 55666666654444333 66787766544333 355567788888887654443
No 155
>TIGR00405 L26e_arch ribosomal protein L24p/L26e, archaeal. This protein contains a KOW domain, shared by bacterial NusG and the L24p/L26e family of ribosomal proteins. Although called archaeal NusG in several publications, it is the only close homolog of eukaryotic L26e in archaeal genomes, shares an operon with L11 in many genomes, and has been sequenced from purified ribosomes. It is here designated as a ribosomal protein for these reasons.
Probab=35.67 E-value=48 Score=19.94 Aligned_cols=26 Identities=12% Similarity=0.130 Sum_probs=20.2
Q ss_pred cceEEEEEEcCHHHHHHHHHhhCCcE
Q psy16913 36 QKCFGFVSFDNPASAHTAIQAMNGFQ 61 (81)
Q Consensus 36 ~~~~~fV~f~~~~~A~~Ai~~lng~~ 61 (81)
..||-||+.....+...++..+.|..
T Consensus 37 fpGYvFV~~~~~~~~~~~i~~~~gv~ 62 (145)
T TIGR00405 37 LKGYILVEAETKIDMRNPIIGVPHVR 62 (145)
T ss_pred CCcEEEEEEECcHHHHHHHhCCCCEE
Confidence 34499999998888888888777643
No 156
>PF11181 YflT: Heat induced stress protein YflT
Probab=34.87 E-value=40 Score=19.18 Aligned_cols=28 Identities=21% Similarity=0.259 Sum_probs=21.0
Q ss_pred EEEcCHHHHHHHHHhhCCcEECCEEEEE
Q psy16913 42 VSFDNPASAHTAIQAMNGFQIGMKRLKV 69 (81)
Q Consensus 42 V~f~~~~~A~~Ai~~lng~~i~g~~i~V 69 (81)
-.|.+.++|..||+.|...-+....|.|
T Consensus 4 gv~~~~~E~~~~I~~L~~~Gy~~ddI~V 31 (103)
T PF11181_consen 4 GVYDNEEEALSAIEELKAQGYSEDDIYV 31 (103)
T ss_pred EEECCHHHHHHHHHHHHHcCCCcccEEE
Confidence 3688999999999998765555555554
No 157
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=34.69 E-value=81 Score=24.02 Aligned_cols=35 Identities=14% Similarity=0.147 Sum_probs=29.7
Q ss_pred eEEEEEEcCHHHHHHHHHhhCCcEECCEEEEEEeeC
Q psy16913 38 CFGFVSFDNPASAHTAIQAMNGFQIGMKRLKVQLKR 73 (81)
Q Consensus 38 ~~~fV~f~~~~~A~~Ai~~lng~~i~g~~i~V~~a~ 73 (81)
.|.||+... ..|...+..|++..+.|+.+.|+.+.
T Consensus 527 ~~s~v~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 561 (629)
T PRK11634 527 SHSTIELPK-GMPGEVLQHFTRTRILNKPMNMQLLG 561 (629)
T ss_pred CceEEEcCh-hhHHHHHHHhccccccCCceEEEECC
Confidence 478888865 45888999999999999999999875
No 158
>PF12829 Mhr1: Transcriptional regulation of mitochondrial recombination; InterPro: IPR024629 These proteins are involved in regulation of RNA polymerase II-dependent transcription. They are also involved in regulation of mitochondrial DNA recombination, maintenance, repair, and generation of homoplasmic cells [, , , ].
Probab=33.66 E-value=67 Score=18.41 Aligned_cols=22 Identities=23% Similarity=0.255 Sum_probs=18.1
Q ss_pred ceEEEEEEcCHHHHHHHHHhhC
Q psy16913 37 KCFGFVSFDNPASAHTAIQAMN 58 (81)
Q Consensus 37 ~~~~fV~f~~~~~A~~Ai~~ln 58 (81)
+++|-|+|.+.+.+..|-+.|-
T Consensus 51 ~pm~vv~f~~~~~g~~~yq~Lr 72 (91)
T PF12829_consen 51 RPMCVVNFPNYEVGVSAYQKLR 72 (91)
T ss_pred eEeEEEECCChHHHHHHHHHHH
Confidence 3589999999999988877653
No 159
>KOG0105|consensus
Probab=32.81 E-value=92 Score=20.64 Aligned_cols=29 Identities=10% Similarity=0.243 Sum_probs=24.4
Q ss_pred CcceEEEEEEcCHHHHHHHHHhhCCcEEC
Q psy16913 35 NQKCFGFVSFDNPASAHTAIQAMNGFQIG 63 (81)
Q Consensus 35 ~~~~~~fV~f~~~~~A~~Ai~~lng~~i~ 63 (81)
...|++.|+|...+|.+-|+..|+...+.
T Consensus 148 ~rDg~GvV~~~r~eDMkYAvr~ld~~~~~ 176 (241)
T KOG0105|consen 148 QRDGVGVVEYLRKEDMKYAVRKLDDQKFR 176 (241)
T ss_pred ecccceeeeeeehhhHHHHHHhhcccccc
Confidence 44458899999999999999999877654
No 160
>COG0150 PurM Phosphoribosylaminoimidazole (AIR) synthetase [Nucleotide transport and metabolism]
Probab=32.13 E-value=44 Score=23.76 Aligned_cols=26 Identities=15% Similarity=0.104 Sum_probs=23.7
Q ss_pred CcceEEEEEEcCHHHHHHHHHhhCCc
Q psy16913 35 NQKCFGFVSFDNPASAHTAIQAMNGF 60 (81)
Q Consensus 35 ~~~~~~fV~f~~~~~A~~Ai~~lng~ 60 (81)
.+.|.|||..-.+++++++++.|.+.
T Consensus 297 FNmGvG~v~iv~~e~~~~~~~~l~~~ 322 (345)
T COG0150 297 FNMGVGMVLIVPEEDAEKALALLKEQ 322 (345)
T ss_pred hcCccceEEEEcHHHHHHHHHHHHhc
Confidence 67889999999999999999999875
No 161
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=31.96 E-value=79 Score=22.15 Aligned_cols=16 Identities=25% Similarity=0.440 Sum_probs=14.1
Q ss_pred ccCCceeeEEEEEecC
Q psy16913 2 FLPFGNVISSKVFIDR 17 (81)
Q Consensus 2 F~~~G~i~~v~i~~~~ 17 (81)
|-+||+|.+|.++.+.
T Consensus 36 fv~~~pIESiYL~~~~ 51 (309)
T PF10567_consen 36 FVKFGPIESIYLIKSN 51 (309)
T ss_pred hhccCceeEEEEecCC
Confidence 6789999999999775
No 162
>PF03108 DBD_Tnp_Mut: MuDR family transposase; InterPro: IPR004332 The plant MuDR transposase domain is present in plant proteins that are presumed to be the transposases for Mutator transposable elements [, ]. The function of these proteins is unknown. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=31.69 E-value=73 Score=16.39 Aligned_cols=29 Identities=14% Similarity=0.112 Sum_probs=18.8
Q ss_pred EEEcCHHHHHHHHHhhCCcEECCEEEEEEee
Q psy16913 42 VSFDNPASAHTAIQAMNGFQIGMKRLKVQLK 72 (81)
Q Consensus 42 V~f~~~~~A~~Ai~~lng~~i~g~~i~V~~a 72 (81)
.+|.+.++...|+.... ...+..+.|...
T Consensus 8 ~~F~~~~e~k~av~~ya--i~~~~~~~v~ks 36 (67)
T PF03108_consen 8 QTFPSKEEFKEAVREYA--IKNGFEFKVKKS 36 (67)
T ss_pred CEECCHHHHHHHHHHHH--HhcCcEEEEecc
Confidence 57999999999987643 333444444433
No 163
>KOG2891|consensus
Probab=30.98 E-value=3.9 Score=28.51 Aligned_cols=52 Identities=23% Similarity=0.448 Sum_probs=29.5
Q ss_pred ccCCceeeEEEEEe-cC----CCCCcccccccccccccCcceEE---------EEEEcCHHHHHHHHHhhCCcEE
Q psy16913 2 FLPFGNVISSKVFI-DR----ATNQSKCFGECNRKVSVNQKCFG---------FVSFDNPASAHTAIQAMNGFQI 62 (81)
Q Consensus 2 F~~~G~i~~v~i~~-~~----~~~~~kg~~~~~~~~~~~~~~~~---------fV~f~~~~~A~~Ai~~lng~~i 62 (81)
|+.||.|..|.|+. |+ .+|+..| .-..||+ ||+|.....-..|+..|.|..+
T Consensus 182 ~eafg~ir~vdipicdplr~~mn~kisg---------iq~~gfg~g~dlffeayvqfmeykgfa~amdalr~~k~ 247 (445)
T KOG2891|consen 182 FEAFGEIRNVDIPICDPLREEMNGKISG---------IQFHGFGFGGDLFFEAYVQFMEYKGFAQAMDALRGMKL 247 (445)
T ss_pred HHHhccceecCCcccchhHHHhcCcccc---------ceeeccccCcchhHHHHHHHHHHHhHHHHHHHHhcchH
Confidence 77899999988752 22 3343333 0111233 4566555566667777776554
No 164
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=30.77 E-value=1.1e+02 Score=17.39 Aligned_cols=31 Identities=10% Similarity=0.290 Sum_probs=20.8
Q ss_pred EEEEEcCHHHHHHHHHhhCCcE--ECCEEEEEEe
Q psy16913 40 GFVSFDNPASAHTAIQAMNGFQ--IGMKRLKVQL 71 (81)
Q Consensus 40 ~fV~f~~~~~A~~Ai~~lng~~--i~g~~i~V~~ 71 (81)
|.|+|.++.-|++-++ +..+. +++..+.|..
T Consensus 1 AlITF~e~~VA~~i~~-~~~~~v~l~~~~~~V~v 33 (88)
T PF07292_consen 1 ALITFEEEGVAQRILK-KKKHPVPLEDCCVRVKV 33 (88)
T ss_pred CEEEeCcHHHHHHHHh-CCEEEEEECCEEEEEEE
Confidence 5799999998888776 33343 4455555543
No 165
>KOG1134|consensus
Probab=30.71 E-value=1e+02 Score=24.15 Aligned_cols=38 Identities=16% Similarity=0.163 Sum_probs=26.2
Q ss_pred cceEEEEEEcCHHHHHHHHHhhCCcEECCEEEEEEeeCCC
Q psy16913 36 QKCFGFVSFDNPASAHTAIQAMNGFQIGMKRLKVQLKRPK 75 (81)
Q Consensus 36 ~~~~~fV~f~~~~~A~~Ai~~lng~~i~g~~i~V~~a~~~ 75 (81)
..+.|||+|.+.-.|+.|.+....... ....+.+|...
T Consensus 304 ~~~~aFVtf~sr~~A~~~aq~~~~~~~--~~w~~~~APeP 341 (728)
T KOG1134|consen 304 PLPAAFVTFKSRYGAAVAAQTQQSLNP--TKWLTEFAPEP 341 (728)
T ss_pred CCceEEEEEEeeHHHHHHHHhhhcCCC--CceEEEecCCc
Confidence 456999999999999999886333222 33566666443
No 166
>PRK00911 dihydroxy-acid dehydratase; Provisional
Probab=29.30 E-value=1.1e+02 Score=23.24 Aligned_cols=38 Identities=21% Similarity=0.156 Sum_probs=29.2
Q ss_pred cceEEEEEEcCHHHHHHHHHhhCCcEECCEEEEEEeeCCCC
Q psy16913 36 QKCFGFVSFDNPASAHTAIQAMNGFQIGMKRLKVQLKRPKD 76 (81)
Q Consensus 36 ~~~~~fV~f~~~~~A~~Ai~~lng~~i~g~~i~V~~a~~~~ 76 (81)
.+|=| ++|+++++|.+||. +|..-.|--|.+.+.-|+-
T Consensus 397 ~~GpA-~VF~see~a~~ai~--~g~I~~gdVvViRyeGPkG 434 (552)
T PRK00911 397 FTGPA-RVFDSEEEAMEAIL--AGKIKAGDVVVIRYEGPKG 434 (552)
T ss_pred eeeeE-EEECCHHHHHHHHh--cCCCCCCeEEEEeCCCCCC
Confidence 34455 77999999999997 4666678888888877764
No 167
>PRK12448 dihydroxy-acid dehydratase; Provisional
Probab=29.19 E-value=1.2e+02 Score=23.47 Aligned_cols=37 Identities=19% Similarity=0.172 Sum_probs=28.9
Q ss_pred ceEEEEEEcCHHHHHHHHHhhCCcEECCEEEEEEeeCCCC
Q psy16913 37 KCFGFVSFDNPASAHTAIQAMNGFQIGMKRLKVQLKRPKD 76 (81)
Q Consensus 37 ~~~~fV~f~~~~~A~~Ai~~lng~~i~g~~i~V~~a~~~~ 76 (81)
+|=| ++|+++++|.+||. +|..-.|--+.+.+.-|+.
T Consensus 448 ~GpA-~VFdsee~a~~ai~--~g~I~~gdVvVIRyeGPkG 484 (615)
T PRK12448 448 TGPA-RVFESQDDAVEAIL--GGKVKAGDVVVIRYEGPKG 484 (615)
T ss_pred EEeE-EEECCHHHHHHHHh--cCCCCCCeEEEEeCCCCCC
Confidence 4444 78999999999997 4666678888888877764
No 168
>PF13689 DUF4154: Domain of unknown function (DUF4154)
Probab=28.85 E-value=1.3e+02 Score=18.02 Aligned_cols=33 Identities=18% Similarity=0.358 Sum_probs=25.3
Q ss_pred EEEEEEcCHHHHHHHHHhhCCcEECCEEEEEEee
Q psy16913 39 FGFVSFDNPASAHTAIQAMNGFQIGMKRLKVQLK 72 (81)
Q Consensus 39 ~~fV~f~~~~~A~~Ai~~lng~~i~g~~i~V~~a 72 (81)
+-+..+.+.. ...++..+.+..+.|+++.|..-
T Consensus 28 ~~icv~g~~~-~~~~L~~l~~~~~~~~~i~v~~~ 60 (145)
T PF13689_consen 28 FRICVLGDDP-FAEALSTLAGKQVGGRPIRVRRL 60 (145)
T ss_pred eEEEEECChH-HHHHHHHhhhcccCCCcEEEEEC
Confidence 5566666554 55688899999999999998754
No 169
>smart00738 NGN In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. In Spt5p, this domain may confer affinity for Spt4p.Spt4p
Probab=28.69 E-value=48 Score=18.46 Aligned_cols=23 Identities=30% Similarity=0.341 Sum_probs=18.1
Q ss_pred eEEEEEEcCHHHHHHHHHhhCCc
Q psy16913 38 CFGFVSFDNPASAHTAIQAMNGF 60 (81)
Q Consensus 38 ~~~fV~f~~~~~A~~Ai~~lng~ 60 (81)
||-||.....++...++..+.|.
T Consensus 60 GYvFv~~~~~~~~~~~i~~~~~v 82 (106)
T smart00738 60 GYIFVEADLEDEVWTAIRGTPGV 82 (106)
T ss_pred CEEEEEEEeCCcHHHHHhcCCCc
Confidence 49999998777777888877763
No 170
>TIGR00110 ilvD dihydroxy-acid dehydratase. This model generates scores of up to 150 bits vs. 6-phosphogluconate dehydratase, a homologous enzyme.
Probab=28.64 E-value=1.2e+02 Score=23.03 Aligned_cols=38 Identities=18% Similarity=0.141 Sum_probs=29.6
Q ss_pred cceEEEEEEcCHHHHHHHHHhhCCcEECCEEEEEEeeCCCC
Q psy16913 36 QKCFGFVSFDNPASAHTAIQAMNGFQIGMKRLKVQLKRPKD 76 (81)
Q Consensus 36 ~~~~~fV~f~~~~~A~~Ai~~lng~~i~g~~i~V~~a~~~~ 76 (81)
.+|-| +.|+++++|..||. +|..-.|--+.|.+.-|+.
T Consensus 382 ~~G~A-~VF~see~a~~ai~--~g~i~~gdVvViRyeGPkG 419 (535)
T TIGR00110 382 FEGPA-KVFESEEEALEAIL--GGKIKEGDVVVIRYEGPKG 419 (535)
T ss_pred EEEeE-EEECCHHHHHHHHh--cCCCCCCeEEEEeCCCCCC
Confidence 34455 67999999999997 5666678888888887763
No 171
>PF04026 SpoVG: SpoVG; InterPro: IPR007170 This is a stage V sporulation protein G. It is essential for sporulation and specific to stage V sporulation in Bacillus megaterium and Bacillus subtilis []. In B. subtilis, expression decreases after 30-60 minutes of cold shock [].; GO: 0030435 sporulation resulting in formation of a cellular spore; PDB: 2IA9_F 2I9X_B 2I9Z_A.
Probab=28.19 E-value=1.2e+02 Score=17.00 Aligned_cols=26 Identities=19% Similarity=0.349 Sum_probs=16.8
Q ss_pred eeeEEEEEecCCCCCcccccccccccccCcceEEEEEEcC
Q psy16913 7 NVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDN 46 (81)
Q Consensus 7 ~i~~v~i~~~~~~~~~kg~~~~~~~~~~~~~~~~fV~f~~ 46 (81)
+|.+++|-.-...++-++ ||=|+|.+
T Consensus 2 ~itdVri~~~~~~~~lka--------------~asV~~dd 27 (84)
T PF04026_consen 2 KITDVRIRKIEPEGKLKA--------------FASVTFDD 27 (84)
T ss_dssp -EEEEEEEETTSSSSEEE--------------EEEEEETT
T ss_pred ccEEEEEEEecCCCCEEE--------------EEEEEECC
Confidence 356666655444466667 88888876
No 172
>PF07711 RabGGT_insert: Rab geranylgeranyl transferase alpha-subunit, insert domain ; InterPro: IPR009087 Rab geranylgeranyltransferase (RabGGT) catalyses the transfer of geranylgeranyl groups to the C-terminal cysteine residues of Rab proteins, Ras-related small GTPases that function in intracellular vesicular transport []. RabGGT is only able to prenylate Rab when it is complexed to the Rab escort protein (REP), after which REP remains bound to the prenylated Rab and delivers it to its target membrane. RabGGT is a member of the protein prenyltransferase family (IPR008940 from INTERPRO), all of which are heterodimers consisting of alpha and beta subunits. RabGGT is distinct from other members of the prenyltransferase family because of the presence of an Ig-like insert domain in the alpha subunit that is folded into an eight-stranded sandwich between two helices in the helical domain.; GO: 0004663 Rab geranylgeranyltransferase activity, 0008270 zinc ion binding; PDB: 1DCE_C 1LTX_A.
Probab=27.64 E-value=16 Score=21.44 Aligned_cols=38 Identities=18% Similarity=0.315 Sum_probs=19.9
Q ss_pred EEEEEEcCHHHHHHHHHhhCCcEECCEEEEEEeeCCCCCCC
Q psy16913 39 FGFVSFDNPASAHTAIQAMNGFQIGMKRLKVQLKRPKDAAR 79 (81)
Q Consensus 39 ~~fV~f~~~~~A~~Ai~~lng~~i~g~~i~V~~a~~~~~~~ 79 (81)
.--|.|..+-.| ....|. ..++|+++.|+|-.|....+
T Consensus 14 ~l~V~FSrPv~v--~~~~Ll-L~~D~~Pl~VeWRtp~gr~r 51 (102)
T PF07711_consen 14 CLTVAFSRPVNV--GSETLL-LFVDGSPLTVEWRTPDGRNR 51 (102)
T ss_dssp EEEEEEEEEE-S--TTB-EE-EEESSSEE----B-TTSS--
T ss_pred eEEEEecceeee--eeeeEE-EEEcCCceEEEeeCCCCCCC
Confidence 566888888776 222222 45789999999998876544
No 173
>COG5507 Uncharacterized conserved protein [Function unknown]
Probab=26.24 E-value=73 Score=18.79 Aligned_cols=20 Identities=15% Similarity=0.360 Sum_probs=15.8
Q ss_pred eEEEEEEcCHHHHHHHHHhh
Q psy16913 38 CFGFVSFDNPASAHTAIQAM 57 (81)
Q Consensus 38 ~~~fV~f~~~~~A~~Ai~~l 57 (81)
.|..++|.+.+.++.|...+
T Consensus 67 vFsW~~Y~skq~rDA~~~km 86 (117)
T COG5507 67 VFSWIEYPSKQVRDAANAKM 86 (117)
T ss_pred EEEEEEcCchhHHHHHHHHh
Confidence 38899999998888776543
No 174
>COG0129 IlvD Dihydroxyacid dehydratase/phosphogluconate dehydratase [Amino acid transport and metabolism / Carbohydrate transport and metabolism]
Probab=25.87 E-value=1.4e+02 Score=22.81 Aligned_cols=33 Identities=24% Similarity=0.279 Sum_probs=26.8
Q ss_pred EEEcCHHHHHHHHHhhCCcEECCEEEEEEeeCCCC
Q psy16913 42 VSFDNPASAHTAIQAMNGFQIGMKRLKVQLKRPKD 76 (81)
Q Consensus 42 V~f~~~~~A~~Ai~~lng~~i~g~~i~V~~a~~~~ 76 (81)
++|+++++|.+||. +|..-.|--+.|.+.-|+.
T Consensus 419 ~VFds~e~~~~ai~--~g~l~~g~VvVIRyeGPkG 451 (575)
T COG0129 419 RVFDSQEDAIKAIL--DGELKAGDVVVIRYEGPKG 451 (575)
T ss_pred EEECCHHHHHHHHh--cCCCCCCeEEEEeccCCCC
Confidence 78999999999986 6666667778888887764
No 175
>PF11910 NdhO: Cyanobacterial and plant NDH-1 subunit O; InterPro: IPR020905 NAD(P)H-quinone oxidoreductase (NDH-1) shuttles electrons from an unknown electron donor, via FMN and iron-sulphur (Fe-S) centres, to quinones in the respiratory and/or the photosynthetic chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. It couples the redox reaction to proton translocation, and thus conserves the redox energy in a proton gradient. Cyanobacterial NDH-1 also plays a role in inorganic carbon-concentration. NDH-1 can be composed of about 15 different subunits, although different subcomplexes with different compositions have been identified which probably have different functions. This entry represents subunit O. ; GO: 0016655 oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor, 0055114 oxidation-reduction process, 0005886 plasma membrane
Probab=25.81 E-value=1.1e+02 Score=16.54 Aligned_cols=9 Identities=33% Similarity=0.678 Sum_probs=7.0
Q ss_pred EEEEEEcCH
Q psy16913 39 FGFVSFDNP 47 (81)
Q Consensus 39 ~~fV~f~~~ 47 (81)
||+|.|.-|
T Consensus 45 Ya~vr~~~P 53 (67)
T PF11910_consen 45 YAQVRFRVP 53 (67)
T ss_pred EEEEEecCC
Confidence 999998544
No 176
>PRK08211 putative dehydratase; Provisional
Probab=23.88 E-value=1.5e+02 Score=23.12 Aligned_cols=37 Identities=22% Similarity=0.082 Sum_probs=28.0
Q ss_pred ceEEEEEEcCHHHHHHHHHhhCCcEECCEEEEEEeeCCCC
Q psy16913 37 KCFGFVSFDNPASAHTAIQAMNGFQIGMKRLKVQLKRPKD 76 (81)
Q Consensus 37 ~~~~fV~f~~~~~A~~Ai~~lng~~i~g~~i~V~~a~~~~ 76 (81)
+|=| ++|+++++|.+||. +|..-.|--|.+.+.-|+-
T Consensus 470 ~GpA-rVF~seeda~~AI~--~g~I~~GdVvVIRyeGPkG 506 (655)
T PRK08211 470 TGRA-RVFTSEKSAIAAIK--HGEIKAGDILVLIGGGPSG 506 (655)
T ss_pred EEeE-EEECCHHHHHHHHh--CCCCCCCcEEEEeCCCCCC
Confidence 3344 78999999999997 6665568788888877654
No 177
>PRK11230 glycolate oxidase subunit GlcD; Provisional
Probab=23.79 E-value=2.8e+02 Score=20.47 Aligned_cols=40 Identities=20% Similarity=0.117 Sum_probs=27.1
Q ss_pred CCceeeEEEEEecCCCCCcccccccccccccCcceEEEEEEcCHHHHHHHHHhhC
Q psy16913 4 PFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMN 58 (81)
Q Consensus 4 ~~G~i~~v~i~~~~~~~~~kg~~~~~~~~~~~~~~~~fV~f~~~~~A~~Ai~~ln 58 (81)
.+|-|.++.+-..+... ... ..++.|.+.++|..|+..+-
T Consensus 216 tlGIIt~atlkl~p~p~-~~~--------------~~~~~f~~~~~a~~~~~~~~ 255 (499)
T PRK11230 216 MLGVVTEVTVKLLPKPP-VAR--------------VLLASFDSVEKAGLAVGDII 255 (499)
T ss_pred ccEEEEEEEEEEEcCCc-ceE--------------EEEEECCCHHHHHHHHHHHH
Confidence 56777777665554322 122 66788999999999887754
No 178
>COG2088 SpoVG Uncharacterized protein, involved in the regulation of septum location [Cell envelope biogenesis, outer membrane]
Probab=23.73 E-value=1.5e+02 Score=17.11 Aligned_cols=27 Identities=15% Similarity=0.235 Sum_probs=19.6
Q ss_pred eeeEEEEEecCCCCCcccccccccccccCcceEEEEEEcCH
Q psy16913 7 NVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNP 47 (81)
Q Consensus 7 ~i~~v~i~~~~~~~~~kg~~~~~~~~~~~~~~~~fV~f~~~ 47 (81)
.|.+++|-+-...|+-+. |+-|+|.+.
T Consensus 2 ~iTdVRirkv~~dgrmkA--------------~vsvT~D~e 28 (95)
T COG2088 2 EITDVRIRKVDTDGRMKA--------------YVSVTLDNE 28 (95)
T ss_pred cceeEEEEEecCCCcEEE--------------EEEEEecce
Confidence 366777776666677777 888888764
No 179
>PRK15464 cold shock-like protein CspH; Provisional
Probab=23.04 E-value=46 Score=17.93 Aligned_cols=35 Identities=14% Similarity=0.085 Sum_probs=18.6
Q ss_pred EEEEEEcCH-HHHH---HHHHhhCCc--EECCEEEEEEeeCC
Q psy16913 39 FGFVSFDNP-ASAH---TAIQAMNGF--QIGMKRLKVQLKRP 74 (81)
Q Consensus 39 ~~fV~f~~~-~~A~---~Ai~~lng~--~i~g~~i~V~~a~~ 74 (81)
||||+=.+. +|.- .|+.. +|. ...|..+..++...
T Consensus 18 fGFI~~~~g~~DvFvH~s~l~~-~g~~~l~~G~~V~f~v~~~ 58 (70)
T PRK15464 18 KGFIIPSDGRKEVQVHISAFTP-RDAEVLIPGLRVEFCRVNG 58 (70)
T ss_pred eEEEccCCCCccEEEEehhehh-cCCCCCCCCCEEEEEEEEC
Confidence 999987653 2321 34432 232 34476666666543
No 180
>PRK14998 cold shock-like protein CspD; Provisional
Probab=23.01 E-value=52 Score=17.81 Aligned_cols=8 Identities=38% Similarity=0.962 Sum_probs=6.5
Q ss_pred EEEEEEcC
Q psy16913 39 FGFVSFDN 46 (81)
Q Consensus 39 ~~fV~f~~ 46 (81)
||||+=.+
T Consensus 15 fGFI~~~~ 22 (73)
T PRK14998 15 FGFICPEG 22 (73)
T ss_pred eEEEecCC
Confidence 99997655
No 181
>PF14657 Integrase_AP2: AP2-like DNA-binding integrase domain
Probab=22.89 E-value=1.1e+02 Score=14.70 Aligned_cols=29 Identities=21% Similarity=0.193 Sum_probs=18.7
Q ss_pred ecCCCCCcccccccccccccCcceEEEEEEcCHHHHHHHHHhh
Q psy16913 15 IDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAM 57 (81)
Q Consensus 15 ~~~~~~~~kg~~~~~~~~~~~~~~~~fV~f~~~~~A~~Ai~~l 57 (81)
.++.+|+.+- .----|.+..+|..++..+
T Consensus 9 ~~~~~Gkrk~--------------~~k~GF~TkkeA~~~~~~~ 37 (46)
T PF14657_consen 9 YDDETGKRKQ--------------KTKRGFKTKKEAEKALAKI 37 (46)
T ss_pred EECCCCCEEE--------------EEcCCCCcHHHHHHHHHHH
Confidence 5566776554 3333377888998887654
No 182
>TIGR01196 edd 6-phosphogluconate dehydratase. A close homolog, designated MocB (mannityl opine catabolism), is found in a mannopine catabolism region of a plasmid of Agrobacterium tumefaciens. However, it is not essential for mannopine catabolism, branches within the cluster of 6-phosphogluconate dehydratases (with a short branch length) in a tree rooted by the presence of other dehydyatases. It may represent an authentic 6-phosphogluconate dehydratase, redundant with the chromosomal copy shown to exist in plasmid-cured strains. This model includes mocB above the trusted cutoff, although the designation is somewhat tenuous.
Probab=22.54 E-value=1.6e+02 Score=22.61 Aligned_cols=36 Identities=19% Similarity=0.193 Sum_probs=28.0
Q ss_pred eEEEEEEcCHHHHHHHHHhhCCcEECCEEEEEEeeCCCC
Q psy16913 38 CFGFVSFDNPASAHTAIQAMNGFQIGMKRLKVQLKRPKD 76 (81)
Q Consensus 38 ~~~fV~f~~~~~A~~Ai~~lng~~i~g~~i~V~~a~~~~ 76 (81)
|=| +.|++++++..|+. +|..-.|--+.|.+.-|+-
T Consensus 445 GpA-~VFdsee~~~~ai~--~g~i~~g~VvViR~eGPkg 480 (601)
T TIGR01196 445 APA-IVFNDQAEVLAAFK--AGELERDFVAVVRFQGPKA 480 (601)
T ss_pred eeE-EEECCHHHHHHHHh--CCCCCCCcEEEEeCCCCCC
Confidence 344 67999999999987 6666668788888877764
No 183
>PRK09937 stationary phase/starvation inducible regulatory protein CspD; Provisional
Probab=22.52 E-value=51 Score=17.91 Aligned_cols=8 Identities=38% Similarity=0.962 Sum_probs=6.2
Q ss_pred EEEEEEcC
Q psy16913 39 FGFVSFDN 46 (81)
Q Consensus 39 ~~fV~f~~ 46 (81)
||||+=.+
T Consensus 15 fGFI~~~~ 22 (74)
T PRK09937 15 FGFICPEG 22 (74)
T ss_pred eEEEeeCC
Confidence 99997654
No 184
>PF14882 GHL12: Hypothetical glycosyl hydrolase 12
Probab=22.49 E-value=75 Score=16.18 Aligned_cols=15 Identities=13% Similarity=0.082 Sum_probs=10.9
Q ss_pred EEcCHHHHHHHHHhh
Q psy16913 43 SFDNPASAHTAIQAM 57 (81)
Q Consensus 43 ~f~~~~~A~~Ai~~l 57 (81)
.|.+.++|.+|...|
T Consensus 39 ~Y~t~~eA~~Aa~~L 53 (53)
T PF14882_consen 39 FYPTYEEASKAAIKL 53 (53)
T ss_pred ccCCHHHHHHHHHhC
Confidence 466788899887654
No 185
>TIGR03432 yjhG_yagF probable dehydratase, YjhG/YagF family. This homolog of dihydroxy-acid dehydratases has an odd, sparse distribution. Members are found in two Acidobacteria, two Planctomycetes, Bacillus clausii KSM-K16, and (in two copies each) in strains K12-MG1655 and W3110 of Escherichia coli. The local context is not well conserved, but a few members are adjacent to homologs of the gluconate:H+ symporter (see TIGR00791).
Probab=22.37 E-value=1.6e+02 Score=22.80 Aligned_cols=37 Identities=22% Similarity=0.118 Sum_probs=28.0
Q ss_pred ceEEEEEEcCHHHHHHHHHhhCCcEECCEEEEEEeeCCCC
Q psy16913 37 KCFGFVSFDNPASAHTAIQAMNGFQIGMKRLKVQLKRPKD 76 (81)
Q Consensus 37 ~~~~fV~f~~~~~A~~Ai~~lng~~i~g~~i~V~~a~~~~ 76 (81)
+|=| ++|+++++|.+||. +|..-.|--+.+.+.-|+-
T Consensus 464 ~GpA-rVFdsee~a~~AI~--~g~I~~GdVvVIRyeGPkG 500 (640)
T TIGR03432 464 TGPA-RVFSSEKSAIAAIK--HGKIEAGDVLVLIGRGPSG 500 (640)
T ss_pred EEeE-EEECCHHHHHHHHh--CCCCCCCcEEEEeCCCCCC
Confidence 4444 67999999999986 6665567788888876654
No 186
>PRK09054 phosphogluconate dehydratase; Validated
Probab=22.18 E-value=1.7e+02 Score=22.57 Aligned_cols=36 Identities=19% Similarity=0.181 Sum_probs=28.0
Q ss_pred eEEEEEEcCHHHHHHHHHhhCCcEECCEEEEEEeeCCCC
Q psy16913 38 CFGFVSFDNPASAHTAIQAMNGFQIGMKRLKVQLKRPKD 76 (81)
Q Consensus 38 ~~~fV~f~~~~~A~~Ai~~lng~~i~g~~i~V~~a~~~~ 76 (81)
|=| +.|++++++..|+. +|..-.|--+.|.+.-|+-
T Consensus 446 GpA-~VFdsee~~~~Ai~--~g~l~~g~VvViR~eGPkg 481 (603)
T PRK09054 446 APA-RVFDSQEEVQAAFK--AGELDRDFVVVVRFQGPKA 481 (603)
T ss_pred eeE-EEECCHHHHHHHHh--CCCCCCCcEEEEeCCCCCC
Confidence 344 77999999999987 6666667788888877764
No 187
>PLN02805 D-lactate dehydrogenase [cytochrome]
Probab=22.10 E-value=3e+02 Score=20.79 Aligned_cols=20 Identities=15% Similarity=0.102 Sum_probs=16.0
Q ss_pred EEEEEEcCHHHHHHHHHhhC
Q psy16913 39 FGFVSFDNPASAHTAIQAMN 58 (81)
Q Consensus 39 ~~fV~f~~~~~A~~Ai~~ln 58 (81)
.+++.|.+.++|..|+..+-
T Consensus 313 ~~~~~f~~~~~a~~av~~i~ 332 (555)
T PLN02805 313 VAMCNFPTIKDAADVAIATM 332 (555)
T ss_pred EEEEEcCCHHHHHHHHHHHH
Confidence 67889999999888877643
No 188
>PRK13259 regulatory protein SpoVG; Reviewed
Probab=22.08 E-value=1.7e+02 Score=16.83 Aligned_cols=26 Identities=19% Similarity=0.252 Sum_probs=15.9
Q ss_pred eeeEEEEEecCCCCCcccccccccccccCcceEEEEEEcC
Q psy16913 7 NVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDN 46 (81)
Q Consensus 7 ~i~~v~i~~~~~~~~~kg~~~~~~~~~~~~~~~~fV~f~~ 46 (81)
+|.+|++-.-...|+-++ ||=|+|.+
T Consensus 2 ~ITdVri~~~~~~g~lka--------------~asit~dd 27 (94)
T PRK13259 2 EVTDVRLRKVNTEGRMKA--------------IVSITFDN 27 (94)
T ss_pred eEEEEEEEEeCCCCcEEE--------------EEEEEECC
Confidence 355666544333456666 88888876
No 189
>PRK15463 cold shock-like protein CspF; Provisional
Probab=22.03 E-value=52 Score=17.64 Aligned_cols=36 Identities=8% Similarity=-0.007 Sum_probs=18.3
Q ss_pred EEEEEEcCH-HHHH---HHHHhh-CCcEECCEEEEEEeeCC
Q psy16913 39 FGFVSFDNP-ASAH---TAIQAM-NGFQIGMKRLKVQLKRP 74 (81)
Q Consensus 39 ~~fV~f~~~-~~A~---~Ai~~l-ng~~i~g~~i~V~~a~~ 74 (81)
||||+=.+. +|.- .|+..- ....-.|..+..++...
T Consensus 18 fGFI~~~~g~~DvFvH~sal~~~g~~~l~~G~~V~f~v~~~ 58 (70)
T PRK15463 18 KGLITPSDGRKDVQVHISALNLRDAEELTTGLRVEFCRING 58 (70)
T ss_pred eEEEecCCCCccEEEEehhhhhcCCCCCCCCCEEEEEEEEC
Confidence 999987653 2221 344422 12233466666655543
No 190
>PRK09507 cspE cold shock protein CspE; Reviewed
Probab=21.48 E-value=51 Score=17.55 Aligned_cols=9 Identities=33% Similarity=0.914 Sum_probs=7.0
Q ss_pred EEEEEEcCH
Q psy16913 39 FGFVSFDNP 47 (81)
Q Consensus 39 ~~fV~f~~~ 47 (81)
||||+=.+.
T Consensus 17 yGFI~~~~g 25 (69)
T PRK09507 17 FGFITPEDG 25 (69)
T ss_pred cEEEecCCC
Confidence 999986653
No 191
>PF00313 CSD: 'Cold-shock' DNA-binding domain; InterPro: IPR002059 When Escherichia coli is exposed to a temperature drop from 37 to 10 degrees centigrade, a 4-5 hour lag phase occurs, after which growth is resumed at a reduced rate []. During the lag phase, the expression of around 13 proteins, which contain specific DNA-binding regions [], is increased 2-10 fold. These so-called 'cold shock' proteins are thought to help the cell to survive in temperatures lower than optimum growth temperature, by contrast with heat shock proteins, which help the cell to survive in temperatures greater than the optimum, possibly by condensation of the chromosome and organisation of the prokaryotic nucleoid []. A conserved domain of about 70 amino acids has been found in prokaryotic and eukaryotic DNA-binding proteins [, , ]. This domain is known as the 'cold-shock domain' (CSD), part of which is highly similar [] to the RNP-1 RNA-binding motif.; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1HZC_A 1I5F_A 1HZ9_B 1C9O_B 1HZB_B 1HZA_A 2HAX_B 2L15_A 2LSS_A 3I2Z_B ....
Probab=21.07 E-value=81 Score=16.10 Aligned_cols=10 Identities=30% Similarity=0.876 Sum_probs=8.1
Q ss_pred EEEEEEcCHH
Q psy16913 39 FGFVSFDNPA 48 (81)
Q Consensus 39 ~~fV~f~~~~ 48 (81)
||||+-.+..
T Consensus 14 yGFI~~~~~~ 23 (66)
T PF00313_consen 14 YGFITSDDGG 23 (66)
T ss_dssp EEEEEETTSS
T ss_pred ceEEEEcccc
Confidence 9999987754
No 192
>TIGR02381 cspD cold shock domain protein CspD. This model represents what appears to be a phylogenetically distinct clade, containing E. coli CspD and related proteobacterial proteins within the larger family of cold shock domain proteins described by pfam model pfam00313. The gene symbol cspD may have been used idependently for other subfamilies of cold shock domain proteins, such as for B. subtilis CspD. These proteins typically are shorter than 70 amino acids. In E. coli, CspD is a stress response protein induced in stationary phase. This homodimer binds single-stranded DNA and appears to inhibit DNA replication.
Probab=20.70 E-value=63 Score=17.06 Aligned_cols=35 Identities=17% Similarity=0.370 Sum_probs=18.1
Q ss_pred EEEEEEcCH-HHHH---HHHHhhCC--cEECCEEEEEEeeCC
Q psy16913 39 FGFVSFDNP-ASAH---TAIQAMNG--FQIGMKRLKVQLKRP 74 (81)
Q Consensus 39 ~~fV~f~~~-~~A~---~Ai~~lng--~~i~g~~i~V~~a~~ 74 (81)
||||+=.+. ++.- .++.. +| ..-.|..+.......
T Consensus 15 fGFI~~~~g~~dvfvH~s~~~~-~g~~~l~~G~~V~f~~~~~ 55 (68)
T TIGR02381 15 FGFICPEGVDGDIFAHYSTIQM-DGYRTLKAGQKVQFEVVQG 55 (68)
T ss_pred eEEEecCCCCccEEEEHHHhhh-cCCCCCCCCCEEEEEEEEC
Confidence 999987663 3322 23332 23 223466666555543
No 193
>PRK10943 cold shock-like protein CspC; Provisional
Probab=20.25 E-value=54 Score=17.43 Aligned_cols=36 Identities=17% Similarity=0.280 Sum_probs=17.8
Q ss_pred EEEEEEcCH-HHHH---HHHHhhC-CcEECCEEEEEEeeCC
Q psy16913 39 FGFVSFDNP-ASAH---TAIQAMN-GFQIGMKRLKVQLKRP 74 (81)
Q Consensus 39 ~~fV~f~~~-~~A~---~Ai~~ln-g~~i~g~~i~V~~a~~ 74 (81)
||||+=.+. ++.- .|+..-. ...-.|..+.......
T Consensus 17 fGFI~~~~g~~dvFvH~s~l~~~g~~~l~~G~~V~f~~~~~ 57 (69)
T PRK10943 17 FGFITPADGSKDVFVHFSAIQGNGFKTLAEGQNVEFEIQDG 57 (69)
T ss_pred cEEEecCCCCeeEEEEhhHccccCCCCCCCCCEEEEEEEEC
Confidence 999986553 2221 2333211 1223466666555543
No 194
>PF08156 NOP5NT: NOP5NT (NUC127) domain; InterPro: IPR012974 This N-terminal domain is found in RNA-binding proteins of the NOP5 family [].
Probab=20.01 E-value=74 Score=16.92 Aligned_cols=19 Identities=21% Similarity=0.307 Sum_probs=13.1
Q ss_pred EEEEEEcCHHHHHHHHHhh
Q psy16913 39 FGFVSFDNPASAHTAIQAM 57 (81)
Q Consensus 39 ~~fV~f~~~~~A~~Ai~~l 57 (81)
.+|.-|.+.++|-.++..+
T Consensus 46 ~aF~pF~s~~~ALe~~~ai 64 (67)
T PF08156_consen 46 KAFSPFKSAEEALENANAI 64 (67)
T ss_pred hhccCCCCHHHHHHHHHHh
Confidence 5688888877776666544
Done!