Query psy16913
Match_columns 81
No_of_seqs 214 out of 1042
Neff 8.2
Searched_HMMs 29240
Date Fri Aug 16 16:53:35 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16913.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/16913hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fxv_A ELAV-like protein 1; RN 99.8 3.9E-20 1.3E-24 106.4 6.8 60 1-74 39-98 (99)
2 3s8s_A Histone-lysine N-methyl 99.8 1.6E-19 5.6E-24 105.6 6.1 62 1-76 26-87 (110)
3 2cq0_A Eukaryotic translation 99.8 1.8E-18 6E-23 99.1 9.2 66 1-80 35-100 (103)
4 3md1_A Nuclear and cytoplasmic 99.8 1.9E-18 6.6E-23 95.3 7.8 62 1-76 21-82 (83)
5 3bs9_A Nucleolysin TIA-1 isofo 99.8 3.1E-18 1E-22 95.2 7.2 61 1-75 26-86 (87)
6 2cpz_A CUG triplet repeat RNA- 99.8 2.2E-18 7.5E-23 100.5 6.6 66 1-80 45-110 (115)
7 3ns6_A Eukaryotic translation 99.8 3.2E-19 1.1E-23 102.4 2.9 62 1-76 32-94 (100)
8 2dnz_A Probable RNA-binding pr 99.7 3.3E-18 1.1E-22 96.5 6.7 65 1-79 25-89 (95)
9 2lxi_A RNA-binding protein 10; 99.7 3.3E-19 1.1E-23 100.9 2.3 64 1-78 21-86 (91)
10 2cqb_A Peptidyl-prolyl CIS-tra 99.7 2.3E-18 7.9E-23 98.4 5.8 65 1-79 32-96 (102)
11 1whw_A Hypothetical protein ri 99.7 4E-18 1.4E-22 96.9 6.8 65 1-79 28-92 (99)
12 3p5t_L Cleavage and polyadenyl 99.7 2.6E-19 8.9E-24 100.8 1.7 66 1-80 21-88 (90)
13 2dgo_A Cytotoxic granule-assoc 99.7 9.5E-18 3.2E-22 97.7 8.0 64 1-78 35-98 (115)
14 2x1f_A MRNA 3'-END-processing 99.7 6.2E-18 2.1E-22 95.9 7.0 63 1-77 22-84 (96)
15 1oo0_B CG8781-PA, drosophila Y 99.7 4.3E-18 1.5E-22 98.5 6.4 64 1-78 46-109 (110)
16 2cpi_A CCR4-NOT transcription 99.7 1.6E-17 5.4E-22 96.7 8.8 65 1-76 38-102 (111)
17 1x5t_A Splicing factor 3B subu 99.7 3.2E-18 1.1E-22 96.8 5.6 65 1-79 25-90 (96)
18 2dgs_A DAZ-associated protein 99.7 6.6E-18 2.2E-22 96.1 6.8 64 1-79 30-93 (99)
19 2do4_A Squamous cell carcinoma 99.7 1E-17 3.5E-22 95.5 7.2 63 1-78 37-99 (100)
20 1p27_B RNA-binding protein 8A; 99.7 4.1E-18 1.4E-22 97.9 5.2 63 1-77 43-105 (106)
21 2dgx_A KIAA0430 protein; RRM d 99.7 8.5E-18 2.9E-22 95.6 6.5 63 1-80 33-95 (96)
22 3mdf_A Peptidyl-prolyl CIS-tra 99.7 9E-18 3.1E-22 92.9 6.3 59 1-73 27-85 (85)
23 4a8x_A RNA-binding protein wit 99.7 7.7E-18 2.6E-22 93.6 6.0 64 1-78 24-88 (88)
24 2dnm_A SRP46 splicing factor; 99.7 4.8E-18 1.6E-22 97.3 5.1 64 1-78 33-96 (103)
25 2e5h_A Zinc finger CCHC-type a 99.7 2E-17 6.7E-22 93.2 7.4 59 1-73 36-94 (94)
26 4f25_A Polyadenylate-binding p 99.7 1.3E-17 4.5E-22 97.7 6.9 62 1-78 25-86 (115)
27 1x5u_A Splicing factor 3B subu 99.7 5.9E-18 2E-22 97.1 5.2 65 1-79 35-99 (105)
28 1h2v_Z 20 kDa nuclear CAP bind 99.7 2.3E-17 7.8E-22 100.7 8.2 65 1-79 59-123 (156)
29 2cpf_A RNA binding motif prote 99.7 1.2E-17 3.9E-22 94.9 6.3 65 1-79 25-92 (98)
30 2d9p_A Polyadenylate-binding p 99.7 1.9E-17 6.7E-22 94.7 7.3 63 1-79 35-97 (103)
31 2lkz_A RNA-binding protein 5; 99.7 3.8E-18 1.3E-22 97.7 4.2 60 1-74 29-94 (95)
32 2cqc_A Arginine/serine-rich sp 99.7 1.9E-17 6.4E-22 93.3 7.0 60 1-74 35-94 (95)
33 1x4h_A RNA-binding protein 28; 99.7 1.4E-17 4.7E-22 96.3 6.6 65 1-79 35-105 (111)
34 2dnh_A Bruno-like 5, RNA bindi 99.7 1.1E-17 3.9E-22 95.9 6.1 65 1-80 35-102 (105)
35 2kxn_B Transformer-2 protein h 99.7 8E-18 2.7E-22 100.7 5.5 63 1-77 66-128 (129)
36 2jrs_A RNA-binding protein 39; 99.7 7.7E-18 2.6E-22 97.9 5.2 63 1-77 46-108 (108)
37 1x5s_A Cold-inducible RNA-bind 99.7 4.3E-18 1.5E-22 97.3 4.0 65 1-79 32-96 (102)
38 1u6f_A Tcubp1, RNA-binding pro 99.7 1.6E-17 5.4E-22 99.6 6.3 65 1-79 62-126 (139)
39 2cph_A RNA binding motif prote 99.7 1.6E-17 5.4E-22 95.5 5.9 65 1-79 35-101 (107)
40 3ucg_A Polyadenylate-binding p 99.7 3.6E-17 1.2E-21 91.2 7.1 61 1-76 26-86 (89)
41 2dng_A Eukaryotic translation 99.7 5.7E-17 1.9E-21 92.9 8.1 63 1-79 35-97 (103)
42 2pe8_A Splicing factor 45; RRM 99.7 6.1E-17 2.1E-21 94.1 7.8 60 1-74 33-93 (105)
43 2cpe_A RNA-binding protein EWS 99.7 2.4E-17 8.2E-22 95.7 5.9 65 1-79 35-107 (113)
44 2kn4_A Immunoglobulin G-bindin 99.7 1.7E-17 5.7E-22 101.2 5.5 65 1-79 90-154 (158)
45 1wi8_A EIF-4B, eukaryotic tran 99.7 7.1E-17 2.4E-21 92.6 7.2 62 1-78 35-97 (104)
46 2khc_A Testis-specific RNP-typ 99.7 4.2E-17 1.4E-21 95.3 6.3 59 1-73 60-118 (118)
47 2do0_A HnRNP M, heterogeneous 99.7 1.3E-16 4.4E-21 92.7 8.4 62 1-77 35-96 (114)
48 2cqd_A RNA-binding region cont 99.7 5.8E-17 2E-21 94.6 6.9 62 1-77 37-98 (116)
49 2dgp_A Bruno-like 4, RNA bindi 99.7 1.5E-17 5.1E-22 95.6 4.2 65 1-79 33-100 (106)
50 2cqi_A Nucleolysin TIAR; RNA r 99.7 9.6E-17 3.3E-21 91.8 7.5 63 1-79 35-97 (103)
51 2fy1_A RNA-binding motif prote 99.7 2.6E-17 8.8E-22 96.7 5.2 62 1-77 27-88 (116)
52 3n9u_C Cleavage and polyadenyl 99.7 2.5E-17 8.6E-22 101.4 5.3 61 1-75 75-137 (156)
53 3ex7_B RNA-binding protein 8A; 99.7 1.8E-17 6.2E-22 97.9 4.5 64 1-78 42-105 (126)
54 2dh8_A DAZ-associated protein 99.7 3.6E-17 1.2E-21 93.9 5.6 64 1-79 36-99 (105)
55 3ulh_A THO complex subunit 4; 99.7 8.3E-17 2.8E-21 92.5 7.1 58 1-73 49-106 (107)
56 2jwn_A Embryonic polyadenylate 99.7 1.2E-16 4E-21 94.1 7.8 62 1-77 56-117 (124)
57 2kt5_A RNA and export factor-b 99.7 8.3E-17 2.8E-21 95.0 7.1 64 1-79 55-118 (124)
58 1x4b_A Heterogeneous nuclear r 99.7 7.9E-17 2.7E-21 94.0 6.9 64 1-79 47-110 (116)
59 2div_A TRNA selenocysteine ass 99.7 2.4E-17 8.3E-22 93.7 4.4 63 1-77 29-96 (99)
60 2la6_A RNA-binding protein FUS 99.7 3.1E-17 1.1E-21 93.4 4.9 59 1-73 33-99 (99)
61 2rs2_A Musashi-1, RNA-binding 99.7 1.2E-16 4.1E-21 92.9 7.4 63 1-78 45-107 (109)
62 2cq3_A RNA-binding protein 9; 99.7 2.3E-16 8E-21 90.2 8.5 62 1-78 35-96 (103)
63 1p1t_A Cleavage stimulation fa 99.7 2E-17 6.8E-22 94.7 3.9 63 1-77 28-90 (104)
64 2ywk_A Putative RNA-binding pr 99.7 9.5E-17 3.2E-21 90.5 6.6 59 1-74 36-94 (95)
65 1rk8_A CG8781-PA, CG8781-PA pr 99.7 7.8E-17 2.7E-21 99.4 6.6 63 1-77 92-154 (165)
66 2ki2_A SS-DNA binding protein 99.7 1.1E-17 3.7E-22 93.7 2.3 63 1-78 21-83 (90)
67 2cqp_A RNA-binding protein 12; 99.7 4.1E-17 1.4E-21 92.6 4.7 62 1-76 35-96 (98)
68 2cq4_A RNA binding motif prote 99.7 5E-17 1.7E-21 94.6 4.8 61 1-76 45-105 (114)
69 2dhg_A TRNA selenocysteine ass 99.7 3.7E-17 1.3E-21 93.6 3.6 63 1-78 29-93 (104)
70 2j76_E EIF-4B, EIF4B, eukaryot 99.7 6E-17 2.1E-21 92.6 4.5 60 1-76 39-99 (100)
71 2ek1_A RNA-binding protein 12; 99.7 8E-17 2.7E-21 90.8 4.5 60 1-74 35-94 (95)
72 1jmt_A Splicing factor U2AF 35 99.7 1.6E-16 5.6E-21 92.0 5.9 55 3-72 49-103 (104)
73 1x4e_A RNA binding motif, sing 99.7 3E-17 1E-21 91.0 2.7 59 1-73 25-83 (85)
74 2nlw_A Eukaryotic translation 99.7 9.1E-17 3.1E-21 92.7 4.6 61 1-77 41-102 (105)
75 2wbr_A GW182, gawky, LD47780P; 99.7 1.6E-16 5.5E-21 90.2 5.4 53 1-73 27-79 (89)
76 2dgv_A HnRNP M, heterogeneous 99.7 1.5E-16 5E-21 89.2 5.2 63 1-79 28-90 (92)
77 3v4m_A Splicing factor U2AF 65 99.7 3.5E-16 1.2E-20 90.8 6.9 60 1-74 35-96 (105)
78 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.7 1.9E-16 6.5E-21 94.5 5.8 58 1-72 83-140 (140)
79 2lea_A Serine/arginine-rich sp 99.6 4.4E-17 1.5E-21 98.0 2.9 64 1-78 67-130 (135)
80 1x5o_A RNA binding motif, sing 99.6 3.7E-16 1.3E-20 90.8 6.7 61 1-76 45-113 (114)
81 3s7r_A Heterogeneous nuclear r 99.6 4.8E-16 1.7E-20 86.4 6.9 57 1-72 31-87 (87)
82 2cqg_A TDP-43, TAR DNA-binding 99.6 7.1E-16 2.4E-20 88.2 7.7 62 1-78 35-96 (103)
83 2dis_A Unnamed protein product 99.6 1.1E-16 3.7E-21 92.3 4.2 63 1-77 28-94 (109)
84 2a3j_A U1 small nuclear ribonu 99.6 9.6E-17 3.3E-21 96.1 4.0 60 1-77 53-112 (127)
85 2mss_A Protein (musashi1); RNA 99.6 3.6E-17 1.2E-21 88.8 2.0 57 1-72 19-75 (75)
86 1x4a_A Splicing factor, argini 99.6 8.9E-16 3E-20 88.6 7.6 62 1-79 42-103 (109)
87 3md3_A Nuclear and cytoplasmic 99.6 7.5E-16 2.6E-20 93.0 7.4 60 1-74 107-166 (166)
88 2dgw_A Probable RNA-binding pr 99.6 9.2E-16 3.1E-20 86.0 6.8 60 1-77 30-89 (91)
89 2m2b_A RNA-binding protein 10; 99.6 2.7E-17 9.2E-22 98.1 0.4 62 1-77 43-110 (131)
90 2lcw_A RNA-binding protein FUS 99.4 2.4E-17 8.2E-22 96.3 0.0 64 1-78 27-98 (116)
91 1x5p_A Negative elongation fac 99.6 2E-15 6.8E-20 85.6 8.0 59 1-79 33-91 (97)
92 1uaw_A Mouse-musashi-1; RNP-ty 99.6 1.5E-16 5.2E-21 86.5 3.0 58 1-73 20-77 (77)
93 2err_A Ataxin-2-binding protei 99.6 5E-16 1.7E-20 90.1 5.3 60 1-76 49-108 (109)
94 1s79_A Lupus LA protein; RRM, 99.6 2.6E-16 9E-21 91.0 4.1 58 1-74 31-88 (103)
95 2qfj_A FBP-interacting repress 99.6 8.3E-16 2.8E-20 96.6 6.7 64 1-78 145-208 (216)
96 3q2s_C Cleavage and polyadenyl 99.6 2.3E-16 7.8E-21 102.2 4.0 60 1-74 88-149 (229)
97 3ue2_A Poly(U)-binding-splicin 99.6 1.2E-15 4.2E-20 90.4 6.7 59 2-74 46-108 (118)
98 2yh0_A Splicing factor U2AF 65 99.6 1.1E-15 3.9E-20 94.9 6.8 64 1-78 134-197 (198)
99 2fc9_A NCL protein; structure 99.6 1.8E-15 6.3E-20 86.2 7.2 60 1-78 35-94 (101)
100 2fc8_A NCL protein; structure 99.6 4.3E-15 1.5E-19 84.6 8.2 62 1-79 35-96 (102)
101 1x4d_A Matrin 3; structural ge 99.6 1.4E-15 4.9E-20 88.1 6.1 56 1-76 36-93 (102)
102 2krb_A Eukaryotic translation 99.6 1.7E-16 5.7E-21 87.5 1.8 54 1-70 27-81 (81)
103 1x4g_A Nucleolysin TIAR; struc 99.6 1.7E-15 5.9E-20 87.5 6.2 59 1-79 45-103 (109)
104 1b7f_A Protein (SXL-lethal pro 99.6 2.4E-15 8.3E-20 91.1 7.1 63 1-77 23-85 (168)
105 2j8a_A Histone-lysine N-methyl 99.6 7.9E-16 2.7E-20 92.9 4.8 60 1-74 26-95 (136)
106 1x4c_A Splicing factor, argini 99.6 2.8E-15 9.6E-20 86.6 7.0 57 1-78 35-96 (108)
107 1fxl_A Paraneoplastic encephal 99.6 2.9E-15 9.8E-20 90.5 7.1 63 1-77 22-84 (167)
108 2dit_A HIV TAT specific factor 99.6 3.1E-15 1E-19 87.1 7.0 59 1-77 46-104 (112)
109 2g4b_A Splicing factor U2AF 65 99.6 2E-15 6.7E-20 92.0 6.4 59 1-73 114-172 (172)
110 2cq1_A PTB-like protein L; RRM 99.6 9E-15 3.1E-19 84.4 8.7 58 1-78 35-94 (101)
111 2cpx_A Hypothetical protein FL 99.6 1.5E-16 5E-21 92.5 1.1 65 1-79 45-109 (115)
112 3zzy_A Polypyrimidine tract-bi 99.6 6E-15 2.1E-19 88.9 8.2 58 1-77 48-108 (130)
113 1nu4_A U1A RNA binding domain; 99.6 5.9E-16 2E-20 87.5 3.5 60 1-77 32-91 (97)
114 1sjq_A Polypyrimidine tract-bi 99.6 1.1E-15 3.6E-20 89.2 4.6 58 1-78 36-95 (105)
115 2cjk_A Nuclear polyadenylated 99.6 6E-16 2.1E-20 93.9 3.4 61 1-76 107-167 (167)
116 1fj7_A Nucleolin RBD1, protein 99.6 5.3E-17 1.8E-21 92.6 -1.3 63 1-79 37-99 (101)
117 2dnq_A RNA-binding protein 4B; 99.6 2.8E-15 9.5E-20 83.9 5.8 57 1-79 28-84 (90)
118 2xs2_A Deleted in azoospermia- 99.6 1.1E-15 3.7E-20 87.2 4.2 60 1-77 29-88 (102)
119 2cpy_A RNA-binding protein 12; 99.6 7.5E-16 2.6E-20 89.9 3.5 60 1-76 35-95 (114)
120 1l3k_A Heterogeneous nuclear r 99.6 4E-15 1.4E-19 92.2 6.9 64 1-79 124-187 (196)
121 2dgt_A RNA-binding protein 30; 99.6 6.1E-15 2.1E-19 82.8 7.1 57 1-79 30-86 (92)
122 3pgw_S U1-70K; protein-RNA com 99.6 3.5E-15 1.2E-19 104.2 7.3 63 1-77 122-184 (437)
123 1wez_A HnRNP H', FTP-3, hetero 99.6 2.7E-15 9.1E-20 86.4 5.5 60 1-77 35-94 (102)
124 4f02_A Polyadenylate-binding p 99.6 1.4E-15 4.8E-20 96.6 4.6 60 1-76 123-182 (213)
125 2hvz_A Splicing factor, argini 99.6 5.9E-16 2E-20 88.2 2.5 58 1-77 20-77 (101)
126 1why_A Hypothetical protein ri 99.6 2.5E-15 8.5E-20 85.1 5.0 58 1-78 37-96 (97)
127 3r27_A HnRNP L, heterogeneous 99.6 4E-15 1.4E-19 86.1 5.9 56 1-76 41-98 (100)
128 1wg5_A Heterogeneous nuclear r 99.6 4.1E-15 1.4E-19 85.5 5.6 61 1-77 35-96 (104)
129 1fjc_A Nucleolin RBD2, protein 99.6 2.8E-15 9.5E-20 84.6 4.7 60 1-79 36-95 (96)
130 4f02_A Polyadenylate-binding p 99.6 9.4E-15 3.2E-19 92.8 7.5 62 1-76 35-96 (213)
131 1wex_A Hypothetical protein (r 99.6 2.4E-15 8.2E-20 87.2 4.4 59 1-79 35-95 (104)
132 1iqt_A AUF1, heterogeneous nuc 99.6 3.6E-16 1.2E-20 84.7 0.5 57 1-72 19-75 (75)
133 2dnp_A RNA-binding protein 14; 99.6 7.9E-15 2.7E-19 82.0 6.0 57 1-79 29-85 (90)
134 2f3j_A RNA and export factor b 99.6 1.9E-15 6.6E-20 94.6 3.7 62 1-77 108-169 (177)
135 1wf1_A RNA-binding protein RAL 99.6 5.2E-15 1.8E-19 85.6 5.3 57 1-79 48-104 (110)
136 2db1_A Heterogeneous nuclear r 99.6 2.5E-15 8.4E-20 88.4 4.0 59 1-75 37-98 (118)
137 1wel_A RNA-binding protein 12; 99.6 3.8E-16 1.3E-20 92.3 0.4 61 1-76 45-105 (124)
138 2jvo_A Nucleolar protein 3; nu 99.6 8E-15 2.7E-19 85.1 6.0 56 1-78 51-106 (108)
139 2la4_A Nuclear and cytoplasmic 99.6 3.3E-15 1.1E-19 85.1 4.3 55 1-75 47-101 (101)
140 2dgu_A Heterogeneous nuclear r 99.6 9.5E-15 3.2E-19 83.6 6.2 56 1-78 31-86 (103)
141 3lqv_A PRE-mRNA branch site pr 99.6 2E-15 6.9E-20 87.8 3.3 59 1-76 28-86 (115)
142 2cpj_A Non-POU domain-containi 99.5 6.5E-15 2.2E-19 83.7 5.2 57 1-77 35-91 (99)
143 2ad9_A Polypyrimidine tract-bi 99.5 5.4E-15 1.8E-19 87.8 4.9 59 1-79 51-111 (119)
144 2xnq_A Nuclear polyadenylated 99.5 2.3E-14 8E-19 81.6 7.1 54 1-76 43-96 (97)
145 2bz2_A Negative elongation fac 99.5 5.2E-15 1.8E-19 87.6 4.5 58 1-78 57-114 (121)
146 1sjr_A Polypyrimidine tract-bi 99.5 8.2E-15 2.8E-19 91.3 5.5 58 1-76 66-125 (164)
147 3md3_A Nuclear and cytoplasmic 99.5 3E-14 1E-18 85.9 7.8 62 1-77 20-81 (166)
148 1b7f_A Protein (SXL-lethal pro 99.5 9.5E-15 3.2E-19 88.5 5.6 58 1-72 109-168 (168)
149 2hgl_A HNRPF protein, heteroge 99.5 1.8E-15 6.2E-20 91.5 2.3 59 1-75 64-125 (136)
150 2e5j_A Methenyltetrahydrofolat 99.5 3.9E-15 1.3E-19 84.4 3.3 58 1-77 39-96 (97)
151 2i2y_A Fusion protein consists 99.5 5E-15 1.7E-19 89.7 4.0 57 1-76 93-149 (150)
152 2cq2_A Hypothetical protein LO 99.5 8.4E-15 2.9E-19 86.5 4.7 60 1-80 47-111 (114)
153 2jvr_A Nucleolar protein 3; RN 99.5 6E-15 2.1E-19 86.5 4.1 58 1-76 48-106 (111)
154 3smz_A Protein raver-1, ribonu 99.5 1.2E-14 4E-19 95.1 5.8 63 1-78 205-267 (284)
155 2e5i_A Heterogeneous nuclear r 99.5 2.9E-14 9.9E-19 85.2 6.9 56 1-76 45-103 (124)
156 1whx_A Hypothetical protein ri 99.5 8.3E-15 2.8E-19 85.3 4.4 55 1-75 30-84 (111)
157 3egn_A RNA-binding protein 40; 99.5 1.6E-15 5.5E-20 91.3 1.4 63 1-77 65-132 (143)
158 3s6e_A RNA-binding protein 39; 99.5 1.7E-14 5.9E-19 85.0 5.8 56 1-74 37-92 (114)
159 3tyt_A Heterogeneous nuclear r 99.5 2.1E-14 7.2E-19 91.4 6.4 55 1-74 25-79 (205)
160 2d9o_A DNAJ (HSP40) homolog, s 99.5 1.8E-14 6.1E-19 83.2 5.5 57 1-78 37-93 (100)
161 1x4f_A Matrin 3; structural ge 99.5 1E-14 3.6E-19 85.8 4.6 58 1-78 46-105 (112)
162 2dnn_A RNA-binding protein 12; 99.5 1.7E-14 5.9E-19 84.2 5.5 58 1-75 36-93 (109)
163 2ytc_A PRE-mRNA-splicing facto 99.5 2.2E-14 7.6E-19 79.1 5.7 53 1-73 32-85 (85)
164 2ghp_A U4/U6 snRNA-associated 99.5 1.9E-14 6.5E-19 94.4 6.2 61 1-76 231-292 (292)
165 2cpd_A Apobec-1 stimulating pr 99.5 5.1E-14 1.7E-18 79.9 7.2 56 1-78 35-92 (99)
166 1fxl_A Paraneoplastic encephal 99.5 1.5E-14 5.1E-19 87.3 5.1 58 1-72 108-167 (167)
167 2kvi_A Nuclear polyadenylated 99.5 9.2E-15 3.1E-19 82.8 3.7 55 1-77 31-85 (96)
168 1l3k_A Heterogeneous nuclear r 99.5 5E-14 1.7E-18 87.3 7.0 61 1-76 33-93 (196)
169 2qfj_A FBP-interacting repress 99.5 2.8E-14 9.6E-19 89.6 5.1 62 1-76 48-109 (216)
170 2cqh_A IGF-II mRNA-binding pro 99.5 1.7E-14 5.8E-19 81.0 3.7 58 1-79 28-87 (93)
171 2lmi_A GRSF-1, G-rich sequence 99.5 1.8E-15 6.1E-20 87.4 -0.4 59 1-75 31-92 (107)
172 1fje_B Nucleolin RBD12, protei 99.5 9.3E-14 3.2E-18 84.9 7.1 57 1-76 119-175 (175)
173 2diu_A KIAA0430 protein; struc 99.5 1.7E-14 5.8E-19 82.7 3.2 53 1-77 33-86 (96)
174 2e5g_A U6 snRNA-specific termi 99.5 7E-14 2.4E-18 78.8 5.8 58 1-78 28-85 (94)
175 3nmr_A Cugbp ELAV-like family 99.5 5.1E-14 1.7E-18 85.6 5.2 58 1-73 115-175 (175)
176 3pgw_A U1-A; protein-RNA compl 99.5 1.3E-13 4.3E-18 90.1 7.1 59 1-76 33-91 (282)
177 3smz_A Protein raver-1, ribonu 99.5 1.4E-13 4.9E-18 89.9 7.2 62 1-76 115-176 (284)
178 2e44_A Insulin-like growth fac 99.5 3.8E-14 1.3E-18 79.9 3.8 59 1-77 35-94 (96)
179 3beg_B Splicing factor, argini 99.5 5.5E-14 1.9E-18 82.2 4.4 56 1-77 36-96 (115)
180 1wg1_A KIAA1579 protein, homol 99.4 1.6E-13 5.6E-18 76.5 5.7 54 1-75 25-78 (88)
181 2hgn_A Heterogeneous nuclear r 99.4 9.5E-15 3.2E-19 88.7 0.2 60 1-77 66-125 (139)
182 2voo_A Lupus LA protein; RNA-b 99.4 4.1E-13 1.4E-17 84.9 7.0 59 1-75 129-187 (193)
183 2dnr_A Synaptojanin-1; RRM dom 99.4 4E-13 1.4E-17 76.4 5.6 53 2-77 36-88 (91)
184 3u1l_A PRE-mRNA-splicing facto 99.4 2.7E-13 9.2E-18 88.7 4.7 56 1-76 163-230 (240)
185 3d2w_A TAR DNA-binding protein 99.4 6.1E-13 2.1E-17 74.7 5.3 55 1-78 31-87 (89)
186 3nmr_A Cugbp ELAV-like family 99.4 3.5E-13 1.2E-17 81.9 4.7 62 1-76 23-89 (175)
187 2dha_A FLJ20171 protein; RRM d 99.4 5E-14 1.7E-18 83.9 0.8 59 1-75 43-105 (123)
188 2cjk_A Nuclear polyadenylated 99.4 4.3E-13 1.5E-17 81.2 4.9 59 1-75 23-81 (167)
189 2hgm_A HNRPF protein, heteroge 99.4 9.8E-14 3.4E-18 83.0 1.6 59 1-76 62-122 (126)
190 3pgw_A U1-A; protein-RNA compl 99.4 1.5E-12 5E-17 85.0 6.5 54 1-73 227-281 (282)
191 2dnl_A Cytoplasmic polyadenyla 99.3 7E-13 2.4E-17 77.2 4.2 55 1-72 28-85 (114)
192 2adc_A Polypyrimidine tract-bi 99.3 6.2E-13 2.1E-17 85.2 4.3 56 1-75 55-110 (229)
193 3dxb_A Thioredoxin N-terminall 99.3 1.3E-12 4.4E-17 83.3 5.7 58 2-73 150-211 (222)
194 2ghp_A U4/U6 snRNA-associated 99.3 9.9E-13 3.4E-17 86.2 4.6 62 1-77 137-199 (292)
195 1qm9_A Polypyrimidine tract-bi 99.3 4.4E-13 1.5E-17 83.5 2.5 56 1-75 24-79 (198)
196 3sde_A Paraspeckle component 1 99.3 1.9E-12 6.6E-17 84.3 5.4 62 1-77 116-181 (261)
197 1wf0_A TDP-43, TAR DNA-binding 99.3 1.3E-12 4.5E-17 72.6 3.0 57 1-78 25-81 (88)
198 2hzc_A Splicing factor U2AF 65 99.3 3.7E-12 1.3E-16 70.3 4.4 44 7-71 43-86 (87)
199 1fje_B Nucleolin RBD12, protei 99.3 5.3E-13 1.8E-17 81.5 0.2 60 2-77 34-93 (175)
200 2adc_A Polypyrimidine tract-bi 99.3 4.8E-12 1.6E-16 81.0 4.6 56 1-75 171-228 (229)
201 1qm9_A Polypyrimidine tract-bi 99.2 2.1E-12 7.2E-17 80.4 2.3 56 1-75 140-197 (198)
202 3tyt_A Heterogeneous nuclear r 99.2 7.3E-12 2.5E-16 79.6 3.3 56 1-72 143-204 (205)
203 3sde_A Paraspeckle component 1 99.2 3.6E-11 1.2E-15 78.3 5.9 55 1-75 42-96 (261)
204 2yh0_A Splicing factor U2AF 65 99.2 4E-12 1.4E-16 78.7 0.3 36 39-75 53-88 (198)
205 1ufw_A Synaptojanin 2; RNP dom 99.1 4E-11 1.4E-15 68.5 4.0 50 2-74 45-94 (95)
206 3tht_A Alkylated DNA repair pr 99.1 1E-10 3.5E-15 79.9 5.2 53 1-73 40-97 (345)
207 2g4b_A Splicing factor U2AF 65 99.1 2.6E-10 9E-15 69.0 5.6 38 39-77 53-90 (172)
208 1owx_A Lupus LA protein, SS-B, 98.5 8.3E-08 2.8E-12 56.9 4.2 52 1-72 39-93 (121)
209 2l9w_A U4/U6 snRNA-associated- 97.8 2.3E-05 7.9E-10 45.9 3.6 46 6-71 51-96 (117)
210 2kn4_A Immunoglobulin G-bindin 97.5 0.0001 3.5E-09 44.1 3.6 35 10-60 2-36 (158)
211 1wey_A Calcipressin 1; structu 97.5 0.00032 1.1E-08 40.5 5.4 37 40-76 49-85 (104)
212 2i2y_A Fusion protein consists 97.5 6.7E-05 2.3E-09 44.7 2.5 35 39-74 15-50 (150)
213 1wwh_A Nucleoporin 35, nucleop 97.4 0.00039 1.3E-08 41.0 5.0 50 2-72 44-94 (119)
214 3p3d_A Nucleoporin 53; structu 96.6 0.00096 3.3E-08 39.9 2.1 36 37-73 62-97 (132)
215 3ctr_A Poly(A)-specific ribonu 95.1 0.027 9.2E-07 32.1 3.5 36 1-58 25-60 (101)
216 2dhx_A Poly (ADP-ribose) polym 94.4 0.17 5.8E-06 29.0 5.8 39 39-78 49-87 (104)
217 1whv_A Poly(A)-specific ribonu 94.4 0.031 1E-06 31.9 2.6 36 1-58 35-70 (100)
218 3pq1_A Poly(A) RNA polymerase; 89.1 0.13 4.5E-06 36.4 1.2 36 2-56 73-108 (464)
219 2g0c_A ATP-dependent RNA helic 85.5 0.49 1.7E-05 24.7 2.0 34 39-73 42-75 (76)
220 3d45_A Poly(A)-specific ribonu 70.2 4 0.00014 28.9 3.3 20 39-58 475-494 (507)
221 1uw4_A UPF3X; nonsense mediate 66.7 8 0.00027 21.2 3.5 37 39-75 47-88 (91)
222 3lpe_A Putative transcription 59.8 8.5 0.00029 20.9 2.7 23 38-60 51-73 (92)
223 2l08_A Regulator of nonsense t 53.7 27 0.00092 19.4 5.0 35 39-73 55-94 (97)
224 3p8b_B Transcription antitermi 42.6 22 0.00076 20.8 2.8 23 38-60 44-66 (152)
225 3h7h_B Transcription elongatio 41.4 28 0.00097 19.5 3.0 24 36-59 50-73 (106)
226 4bby_A Alkyldihydroxyacetoneph 31.6 94 0.0032 22.6 5.1 39 4-57 370-408 (658)
227 2i9x_A Putative septation prot 25.6 87 0.003 16.9 3.7 26 7-46 5-30 (87)
228 2exu_A Transcription initiatio 25.0 50 0.0017 20.7 2.4 25 36-60 148-172 (200)
229 3kiz_A Phosphoribosylformylgly 24.7 69 0.0024 22.2 3.2 24 35-58 337-360 (394)
230 2hpu_A NOSL protein; alpha bet 24.1 49 0.0017 20.1 2.2 25 35-59 107-132 (175)
231 3pm9_A Putative oxidoreductase 23.9 1.7E+02 0.0058 20.3 5.2 19 39-57 233-251 (476)
232 1nz8_A Transcription antitermi 23.8 60 0.002 18.0 2.4 24 37-60 62-90 (119)
233 2ia9_A Putative septation prot 22.7 1.1E+02 0.0037 17.0 3.7 26 7-46 5-30 (100)
234 2i9z_A Putative septation prot 21.6 1.2E+02 0.0041 17.0 3.8 25 8-46 6-30 (105)
235 2e5p_A Protein PHF1, PHD finge 20.8 1E+02 0.0035 16.0 3.3 9 39-47 39-47 (68)
No 1
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.82 E-value=3.9e-20 Score=106.38 Aligned_cols=60 Identities=33% Similarity=0.612 Sum_probs=57.9
Q ss_pred CccCCceeeEEEEEecCCCCCcccccccccccccCcceEEEEEEcCHHHHHHHHHhhCCcEECCEEEEEEeeCC
Q psy16913 1 MFLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQIGMKRLKVQLKRP 74 (81)
Q Consensus 1 lF~~~G~i~~v~i~~~~~~~~~kg~~~~~~~~~~~~~~~~fV~f~~~~~A~~Ai~~lng~~i~g~~i~V~~a~~ 74 (81)
+|++||+|.++++++|+.+|.++| ||||+|.++++|++|++.|||..+.|++|+|++|+|
T Consensus 39 ~F~~~G~I~~v~i~~d~~tg~~kG--------------~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~AkP 98 (99)
T 4fxv_A 39 LFSSIGEVESAKLIRDKVAGHSLG--------------YGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYARP 98 (99)
T ss_dssp HHHTTSCEEEEEEEECSSSCCEEE--------------EEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCB
T ss_pred HHHhcCCEEEeEeeecCCCCcccc--------------cEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEeeC
Confidence 589999999999999999999999 999999999999999999999999999999999986
No 2
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.79 E-value=1.6e-19 Score=105.58 Aligned_cols=62 Identities=15% Similarity=0.201 Sum_probs=59.0
Q ss_pred CccCCceeeEEEEEecCCCCCcccccccccccccCcceEEEEEEcCHHHHHHHHHhhCCcEECCEEEEEEeeCCCC
Q psy16913 1 MFLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQIGMKRLKVQLKRPKD 76 (81)
Q Consensus 1 lF~~~G~i~~v~i~~~~~~~~~kg~~~~~~~~~~~~~~~~fV~f~~~~~A~~Ai~~lng~~i~g~~i~V~~a~~~~ 76 (81)
+|++||+|.+++|++|+.|++++| ||||+|.+.++|++|++.|||..++|+.|.|++|....
T Consensus 26 ~F~~~G~i~~v~i~~d~~tg~~rG--------------~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a~~~~ 87 (110)
T 3s8s_A 26 MCRKYGEVEEVEILLHPRTRKHLG--------------LARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLDIKGQ 87 (110)
T ss_dssp HHTTTSCEEEEEEEECTTTCCEEE--------------EEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSTTH
T ss_pred HHHhcCCeeEEEEEECCCCCceee--------------EEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCCCc
Confidence 589999999999999999999999 99999999999999999999999999999999997654
No 3
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=1.8e-18 Score=99.14 Aligned_cols=66 Identities=33% Similarity=0.565 Sum_probs=62.0
Q ss_pred CccCCceeeEEEEEecCCCCCcccccccccccccCcceEEEEEEcCHHHHHHHHHhhCCcEECCEEEEEEeeCCCCCCCC
Q psy16913 1 MFLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQIGMKRLKVQLKRPKDAARP 80 (81)
Q Consensus 1 lF~~~G~i~~v~i~~~~~~~~~kg~~~~~~~~~~~~~~~~fV~f~~~~~A~~Ai~~lng~~i~g~~i~V~~a~~~~~~~~ 80 (81)
+|++||+|.+|.|+.++.++.++| ||||+|.+.++|++|++.|||..+.|+.|.|+++.++..+.|
T Consensus 35 ~f~~~G~i~~v~i~~~~~~~~~~g--------------~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~~~~ 100 (103)
T 2cq0_A 35 LFRPFGSISRIYLAKDKTTGQSKG--------------FAFISFHRREDAARAIAGVSGFGYDHLILNVEWAKPSTNSGP 100 (103)
T ss_dssp TSTTTCCEEEEEEEECSSSCSEEE--------------EEEEEESSHHHHHHHHHHTTTCEETTEECEEEESSCCCCSCC
T ss_pred HHHhCCCeEEEEEeecCCCCceee--------------EEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEECCCCCCCCC
Confidence 699999999999999998999999 999999999999999999999999999999999998876554
No 4
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.77 E-value=1.9e-18 Score=95.27 Aligned_cols=62 Identities=27% Similarity=0.485 Sum_probs=59.1
Q ss_pred CccCCceeeEEEEEecCCCCCcccccccccccccCcceEEEEEEcCHHHHHHHHHhhCCcEECCEEEEEEeeCCCC
Q psy16913 1 MFLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQIGMKRLKVQLKRPKD 76 (81)
Q Consensus 1 lF~~~G~i~~v~i~~~~~~~~~kg~~~~~~~~~~~~~~~~fV~f~~~~~A~~Ai~~lng~~i~g~~i~V~~a~~~~ 76 (81)
+|++||+|.++.++.++.++.++| ||||+|.++++|++|++.|||..++|+.|+|+++.++.
T Consensus 21 ~f~~~G~i~~~~i~~~~~~~~~~g--------------~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~~ 82 (83)
T 3md1_A 21 AFKDFPSYLSGHVMWDMQTGSSRG--------------YGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAKLE 82 (83)
T ss_dssp HHTTSTTEEEEEEEECTTTCCEEE--------------EEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCCCC
T ss_pred HHHhcCCeeEEEEEEcCCCCCccc--------------eEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCcCC
Confidence 489999999999999988999999 99999999999999999999999999999999999875
No 5
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.76 E-value=3.1e-18 Score=95.19 Aligned_cols=61 Identities=39% Similarity=0.597 Sum_probs=56.9
Q ss_pred CccCCceeeEEEEEecCCCCCcccccccccccccCcceEEEEEEcCHHHHHHHHHhhCCcEECCEEEEEEeeCCC
Q psy16913 1 MFLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQIGMKRLKVQLKRPK 75 (81)
Q Consensus 1 lF~~~G~i~~v~i~~~~~~~~~kg~~~~~~~~~~~~~~~~fV~f~~~~~A~~Ai~~lng~~i~g~~i~V~~a~~~ 75 (81)
+|++||+|.++.++.++.++.++| ||||+|.+.++|++|++.|||..++|+.|.|+++.++
T Consensus 26 ~F~~~G~i~~v~i~~~~~~~~~~g--------------~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~k 86 (87)
T 3bs9_A 26 AFAPFGRISDARVVKDMATGKSKG--------------YGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRK 86 (87)
T ss_dssp HHGGGSCEEEEEEEECTTTCCEEE--------------EEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC--
T ss_pred HHHhcCCEeEEEEEecCCCCccce--------------EEEEEECCHHHHHHHHHHcCCCEECCeEEEEEecCCC
Confidence 489999999999999988999999 9999999999999999999999999999999999875
No 6
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.75 E-value=2.2e-18 Score=100.55 Aligned_cols=66 Identities=74% Similarity=1.218 Sum_probs=61.6
Q ss_pred CccCCceeeEEEEEecCCCCCcccccccccccccCcceEEEEEEcCHHHHHHHHHhhCCcEECCEEEEEEeeCCCCCCCC
Q psy16913 1 MFLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQIGMKRLKVQLKRPKDAARP 80 (81)
Q Consensus 1 lF~~~G~i~~v~i~~~~~~~~~kg~~~~~~~~~~~~~~~~fV~f~~~~~A~~Ai~~lng~~i~g~~i~V~~a~~~~~~~~ 80 (81)
+|++||+|.+++|+.++.++.++| ||||+|.+.++|++|++.|||..+.|+.|+|+++.++..+.+
T Consensus 45 ~F~~~G~i~~v~i~~~~~~g~~~g--------------~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~~~~ 110 (115)
T 2cpz_A 45 MFMPFGNVVSAKVFIDKQTNLSKC--------------FGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQLKRSKNDSKS 110 (115)
T ss_dssp HHGGGSCCSEEEEEECSSSCSEEE--------------EEEEECSSHHHHHHHHHHHTTCEETTEECEEECCCCSCCCCC
T ss_pred HHHhcCCeEEEEEEECCCCCCcCc--------------cEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEcCCCCcCCC
Confidence 489999999999999998999999 999999999999999999999999999999999998876553
No 7
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.75 E-value=3.2e-19 Score=102.37 Aligned_cols=62 Identities=26% Similarity=0.400 Sum_probs=58.7
Q ss_pred CccCCceeeEEEEEecCCCCCcccccccccccccCcceEEEEEEcCHHHHHHHHHhhCCcEECC-EEEEEEeeCCCC
Q psy16913 1 MFLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQIGM-KRLKVQLKRPKD 76 (81)
Q Consensus 1 lF~~~G~i~~v~i~~~~~~~~~kg~~~~~~~~~~~~~~~~fV~f~~~~~A~~Ai~~lng~~i~g-~~i~V~~a~~~~ 76 (81)
+|++||+|.+++|++++.||+++| ||||+|.++++|++|++.|||..+.| +.|+|++|.++.
T Consensus 32 ~F~~~G~i~~v~i~~d~~tg~~kG--------------~afV~f~~~~~A~~Ai~~lng~~~~g~r~l~V~~a~~~~ 94 (100)
T 3ns6_A 32 LFSKAGKVVNMEFPIDEATGKTKG--------------FLFVECGSMNDAKKIIKSFHGKRLDLKHRLFLYTMKDVE 94 (100)
T ss_dssp HHHTTSCEEEEECCEETTTTEECS--------------EEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEESHHHH
T ss_pred HHHhcCCEeEEEEEEcCCCCccce--------------EEEEEECCHHHHHHHHHHhCCcccCCCeEEEEEECchhh
Confidence 489999999999999999999999 99999999999999999999999999 999999997653
No 8
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.75 E-value=3.3e-18 Score=96.52 Aligned_cols=65 Identities=26% Similarity=0.548 Sum_probs=61.2
Q ss_pred CccCCceeeEEEEEecCCCCCcccccccccccccCcceEEEEEEcCHHHHHHHHHhhCCcEECCEEEEEEeeCCCCCCC
Q psy16913 1 MFLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQIGMKRLKVQLKRPKDAAR 79 (81)
Q Consensus 1 lF~~~G~i~~v~i~~~~~~~~~kg~~~~~~~~~~~~~~~~fV~f~~~~~A~~Ai~~lng~~i~g~~i~V~~a~~~~~~~ 79 (81)
+|++||+|.++.++.++.++.++| ||||+|.+.++|++|++.|||..++|+.|+|+++.++..+.
T Consensus 25 ~f~~~G~v~~v~i~~~~~~~~~~g--------------~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~~~ 89 (95)
T 2dnz_A 25 IFEPFGKIDNIVLMKDSDTGRSKG--------------YGFITFSDSECARRALEQLNGFELAGRPMRVGHVTERLDGG 89 (95)
T ss_dssp HHTTTSCEEEEEEECCSSSCCCCS--------------EEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEESSCCCCCC
T ss_pred HHHhcCCEeEEEEeecCCCCceee--------------EEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEcccccCCC
Confidence 489999999999999998999999 99999999999999999999999999999999998887654
No 9
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.75 E-value=3.3e-19 Score=100.95 Aligned_cols=64 Identities=19% Similarity=0.348 Sum_probs=58.1
Q ss_pred CccCCc-eeeEEEEEecCCCCCcccccccccccccCcceEEEEEEcCHHHHHHHHHhh-CCcEECCEEEEEEeeCCCCCC
Q psy16913 1 MFLPFG-NVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAM-NGFQIGMKRLKVQLKRPKDAA 78 (81)
Q Consensus 1 lF~~~G-~i~~v~i~~~~~~~~~kg~~~~~~~~~~~~~~~~fV~f~~~~~A~~Ai~~l-ng~~i~g~~i~V~~a~~~~~~ 78 (81)
+|++|| +|.+|+|++|+.++.++| ||||+|.++++|++|++.+ |+..++|++|.|++|.|+...
T Consensus 21 ~F~~~G~~v~~v~i~~d~~t~~~rg--------------~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a~~~~~~ 86 (91)
T 2lxi_A 21 QLQSHGVQAREVRLMRNKSSGQSRG--------------FAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYSDPKPKI 86 (91)
T ss_dssp HHHHHTCCCSBCCSSSCSSSCCCSS--------------EEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECCCSCCCC
T ss_pred HHHHhCCEeEEEEEEecCCCCCcCc--------------eEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEcCCCCCC
Confidence 488999 899999999999999999 9999999999999999987 466799999999999887654
No 10
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=2.3e-18 Score=98.40 Aligned_cols=65 Identities=28% Similarity=0.535 Sum_probs=60.8
Q ss_pred CccCCceeeEEEEEecCCCCCcccccccccccccCcceEEEEEEcCHHHHHHHHHhhCCcEECCEEEEEEeeCCCCCCC
Q psy16913 1 MFLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQIGMKRLKVQLKRPKDAAR 79 (81)
Q Consensus 1 lF~~~G~i~~v~i~~~~~~~~~kg~~~~~~~~~~~~~~~~fV~f~~~~~A~~Ai~~lng~~i~g~~i~V~~a~~~~~~~ 79 (81)
+|++||+|.++.|+.++.++.++| ||||+|.+.++|++|++.|||..+.|+.|.|+++.++..+.
T Consensus 32 ~f~~~G~i~~v~i~~~~~~~~~~g--------------~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~~~~ 96 (102)
T 2cqb_A 32 AFIPFGDITDIQIPLDYETEKHRG--------------FAFVEFELAEDAAAAIDNMNESELFGRTIRVNLAKPMRIKE 96 (102)
T ss_dssp HHTTTSCCCCEECCCCSSSCCCSS--------------EEEECCSSHHHHHHHHHHHTTEEETTEEEEEEECCCCCCCC
T ss_pred HhhccCCEEEEEEEecCCCCCcce--------------EEEEEECCHHHHHHHHHHhCCCEECCcEEEEEeCCCCCCCC
Confidence 489999999999999998999999 99999999999999999999999999999999998876554
No 11
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.74 E-value=4e-18 Score=96.92 Aligned_cols=65 Identities=28% Similarity=0.345 Sum_probs=60.8
Q ss_pred CccCCceeeEEEEEecCCCCCcccccccccccccCcceEEEEEEcCHHHHHHHHHhhCCcEECCEEEEEEeeCCCCCCC
Q psy16913 1 MFLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQIGMKRLKVQLKRPKDAAR 79 (81)
Q Consensus 1 lF~~~G~i~~v~i~~~~~~~~~kg~~~~~~~~~~~~~~~~fV~f~~~~~A~~Ai~~lng~~i~g~~i~V~~a~~~~~~~ 79 (81)
+|++||+|.++.|+.++.++.++| ||||+|.+.++|++|++.|||..+.|+.|.|+++.++....
T Consensus 28 ~F~~~G~i~~v~i~~~~~~~~~~g--------------~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~~~ 92 (99)
T 1whw_A 28 LFSAYGPLSELHYPIDSLTKKPKG--------------FAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLPSTIKKEAS 92 (99)
T ss_dssp HHHTTSCEEEEECCCCTTTCCCCS--------------EEEEEESSHHHHHHHHHHTTTEESSSCEEEEEECCCCSTTC
T ss_pred HHHhcCCEeEEEEEecCCCCCcCe--------------EEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCCCcccc
Confidence 489999999999999998999999 99999999999999999999999999999999998877643
No 12
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.74 E-value=2.6e-19 Score=100.75 Aligned_cols=66 Identities=20% Similarity=0.267 Sum_probs=55.2
Q ss_pred CccCCc--eeeEEEEEecCCCCCcccccccccccccCcceEEEEEEcCHHHHHHHHHhhCCcEECCEEEEEEeeCCCCCC
Q psy16913 1 MFLPFG--NVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQIGMKRLKVQLKRPKDAA 78 (81)
Q Consensus 1 lF~~~G--~i~~v~i~~~~~~~~~kg~~~~~~~~~~~~~~~~fV~f~~~~~A~~Ai~~lng~~i~g~~i~V~~a~~~~~~ 78 (81)
+|++|| +|.+++++.++.+|+++| ||||+|.+.++|++|++.|||..++|+.|+|.++.++...
T Consensus 21 ~F~~~G~~~v~~v~i~~~~~~g~~kG--------------~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~~~~~~ 86 (90)
T 3p5t_L 21 AVHSLGVNDILEIKFFENRANGQSKG--------------FALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSNKLEHH 86 (90)
T ss_dssp HHHTTTCCCCCCEEEEECTTTCCEEE--------------EEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC------
T ss_pred HHHHhCCCceEEEEEEecCCCCccCc--------------EEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECCCCccc
Confidence 488999 999999999999999999 9999999999999999999999999999999999887665
Q ss_pred CC
Q psy16913 79 RP 80 (81)
Q Consensus 79 ~~ 80 (81)
.|
T Consensus 87 ~~ 88 (90)
T 3p5t_L 87 HH 88 (90)
T ss_dssp --
T ss_pred cC
Confidence 43
No 13
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.74 E-value=9.5e-18 Score=97.72 Aligned_cols=64 Identities=39% Similarity=0.580 Sum_probs=59.9
Q ss_pred CccCCceeeEEEEEecCCCCCcccccccccccccCcceEEEEEEcCHHHHHHHHHhhCCcEECCEEEEEEeeCCCCCC
Q psy16913 1 MFLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQIGMKRLKVQLKRPKDAA 78 (81)
Q Consensus 1 lF~~~G~i~~v~i~~~~~~~~~kg~~~~~~~~~~~~~~~~fV~f~~~~~A~~Ai~~lng~~i~g~~i~V~~a~~~~~~ 78 (81)
+|++||.|.++.|+.++.++.++| ||||+|.+.++|++|++.|||..+.|+.|.|+++.++...
T Consensus 35 ~F~~~G~i~~v~i~~~~~~~~~~g--------------~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~~ 98 (115)
T 2dgo_A 35 AFAPFGRISDARVVKDMATGKSKG--------------YGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPA 98 (115)
T ss_dssp HHGGGSCEEEEEEEECTTTCCEEE--------------EEEEEESSHHHHHHHHHHTTTCEETTEECEEEESSCCCCC
T ss_pred HHHhcCCeEEEEEEEcCCCCCcce--------------EEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEccCCCCC
Confidence 489999999999999988999999 9999999999999999999999999999999999877543
No 14
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.74 E-value=6.2e-18 Score=95.86 Aligned_cols=63 Identities=30% Similarity=0.534 Sum_probs=59.8
Q ss_pred CccCCceeeEEEEEecCCCCCcccccccccccccCcceEEEEEEcCHHHHHHHHHhhCCcEECCEEEEEEeeCCCCC
Q psy16913 1 MFLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQIGMKRLKVQLKRPKDA 77 (81)
Q Consensus 1 lF~~~G~i~~v~i~~~~~~~~~kg~~~~~~~~~~~~~~~~fV~f~~~~~A~~Ai~~lng~~i~g~~i~V~~a~~~~~ 77 (81)
+|++||+|.+++++.++.+|.++| ||||+|.+.++|++|++.|||..++|+.|.|+++.++..
T Consensus 22 ~F~~~G~i~~v~i~~~~~~g~~~g--------------~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~ 84 (96)
T 2x1f_A 22 LCSNVGPVINLKMMFDPQTGRSKG--------------YAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSSNSDI 84 (96)
T ss_dssp HHHTTSCEEEEECCBCTTTCCBCS--------------EEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSCSSG
T ss_pred HHHhcCCEEEEEEEeCCCCCccce--------------EEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcCCCCC
Confidence 489999999999999998999999 999999999999999999999999999999999988764
No 15
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.74 E-value=4.3e-18 Score=98.52 Aligned_cols=64 Identities=25% Similarity=0.359 Sum_probs=60.5
Q ss_pred CccCCceeeEEEEEecCCCCCcccccccccccccCcceEEEEEEcCHHHHHHHHHhhCCcEECCEEEEEEeeCCCCCC
Q psy16913 1 MFLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQIGMKRLKVQLKRPKDAA 78 (81)
Q Consensus 1 lF~~~G~i~~v~i~~~~~~~~~kg~~~~~~~~~~~~~~~~fV~f~~~~~A~~Ai~~lng~~i~g~~i~V~~a~~~~~~ 78 (81)
+|++||+|.++.++.++.++.++| ||||+|.+.++|++|+..|||..+.|+.|.|+++.++..+
T Consensus 46 ~F~~~G~i~~v~i~~~~~~~~~~g--------------~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~~ 109 (110)
T 1oo0_B 46 KFCDYGEIKNIHLNLDRRTGFSKG--------------YALVEYETHKQALAAKEALNGAEIMGQTIQVDWCFVKGPK 109 (110)
T ss_dssp HHGGGSCEEEEECCBCTTTSSBCS--------------EEEEEESSHHHHHHHHHHHTTCEETTEECEEEESEESSCC
T ss_pred HHHhcCCEEEEEEEecCCCCCcce--------------EEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEcccCCCC
Confidence 489999999999999998999999 9999999999999999999999999999999999887654
No 16
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.74 E-value=1.6e-17 Score=96.70 Aligned_cols=65 Identities=22% Similarity=0.255 Sum_probs=57.0
Q ss_pred CccCCceeeEEEEEecCCCCCcccccccccccccCcceEEEEEEcCHHHHHHHHHhhCCcEECCEEEEEEeeCCCC
Q psy16913 1 MFLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQIGMKRLKVQLKRPKD 76 (81)
Q Consensus 1 lF~~~G~i~~v~i~~~~~~~~~kg~~~~~~~~~~~~~~~~fV~f~~~~~A~~Ai~~lng~~i~g~~i~V~~a~~~~ 76 (81)
+|++||+|.++.|+.++.++.++. ++|||||+|.++++|++|++.|||..++|+.|+|++|.++.
T Consensus 38 ~F~~~G~i~~v~i~~~~~~~~~~~-----------~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~a~~k~ 102 (111)
T 2cpi_A 38 YFGKFGKIHKVVINNSTSYAGSQG-----------PSASAYVTYIRSEDALRAIQCVNNVVVDGRTLKASLGTTKY 102 (111)
T ss_dssp TTTTTSCEEEEEEECCSSCCSSSC-----------CCEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEESCCCCS
T ss_pred HhhccCCEEEEEEecCCCcCccCC-----------CCeEEEEEECcHHHHHHHHHHhCCCEECCEEEEEEeccccc
Confidence 699999999999999887654331 23399999999999999999999999999999999998876
No 17
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=3.2e-18 Score=96.75 Aligned_cols=65 Identities=29% Similarity=0.483 Sum_probs=60.5
Q ss_pred CccCCceeeEE-EEEecCCCCCcccccccccccccCcceEEEEEEcCHHHHHHHHHhhCCcEECCEEEEEEeeCCCCCCC
Q psy16913 1 MFLPFGNVISS-KVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQIGMKRLKVQLKRPKDAAR 79 (81)
Q Consensus 1 lF~~~G~i~~v-~i~~~~~~~~~kg~~~~~~~~~~~~~~~~fV~f~~~~~A~~Ai~~lng~~i~g~~i~V~~a~~~~~~~ 79 (81)
+|++||+|.++ +|+.++.++.++| ||||+|.++++|++|++.|||..+.|+.|.|+++.++..+.
T Consensus 25 ~F~~~G~i~~~~~i~~~~~~g~~~g--------------~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~~~ 90 (96)
T 1x5t_A 25 TFSAFGVILQTPKIMRDPDTGNSKG--------------YAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKKDSKG 90 (96)
T ss_dssp HHHTTSCBSSCCEECCCTTTCSCCS--------------EEEEEBSSHHHHHHHHHTTTTCEETTEECEEEESCCCCCCC
T ss_pred HHHhcCCeeEEEEEEEcCCCCCcCe--------------EEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEecccCCCC
Confidence 48999999999 9999988999999 99999999999999999999999999999999998876543
No 18
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.74 E-value=6.6e-18 Score=96.14 Aligned_cols=64 Identities=27% Similarity=0.499 Sum_probs=59.9
Q ss_pred CccCCceeeEEEEEecCCCCCcccccccccccccCcceEEEEEEcCHHHHHHHHHhhCCcEECCEEEEEEeeCCCCCCC
Q psy16913 1 MFLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQIGMKRLKVQLKRPKDAAR 79 (81)
Q Consensus 1 lF~~~G~i~~v~i~~~~~~~~~kg~~~~~~~~~~~~~~~~fV~f~~~~~A~~Ai~~lng~~i~g~~i~V~~a~~~~~~~ 79 (81)
+|++||+|.++.|+.++.++.++| ||||+|.+.++|++|++ ||+..+.|+.|.|+++.++..+.
T Consensus 30 ~F~~~G~i~~v~i~~~~~~~~~~g--------------~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V~~a~~~~~~~ 93 (99)
T 2dgs_A 30 YFKKFGVVTEVVMIYDAEKQRPRG--------------FGFITFEDEQSVDQAVN-MHFHDIMGKKVEVKRAEPRDSKS 93 (99)
T ss_dssp HHSSSSCEEEEEECCCTTTCSCCS--------------EEEEEESSHHHHHHHHH-HCCCBSSSCBCEEEECCCCCCCC
T ss_pred HHHhcCCeEEEEEEeCCCCCCCCc--------------eEEEEECCHHHHHHHHH-hCCCEECCeEEEEEECCCCcccC
Confidence 489999999999999998999999 99999999999999999 99999999999999998876654
No 19
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.73 E-value=1e-17 Score=95.48 Aligned_cols=63 Identities=21% Similarity=0.418 Sum_probs=59.3
Q ss_pred CccCCceeeEEEEEecCCCCCcccccccccccccCcceEEEEEEcCHHHHHHHHHhhCCcEECCEEEEEEeeCCCCCC
Q psy16913 1 MFLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQIGMKRLKVQLKRPKDAA 78 (81)
Q Consensus 1 lF~~~G~i~~v~i~~~~~~~~~kg~~~~~~~~~~~~~~~~fV~f~~~~~A~~Ai~~lng~~i~g~~i~V~~a~~~~~~ 78 (81)
+|++||+|.++.++.++ ++.++| ||||+|.+.++|++|++.|||..+.|+.|+|+++.++..+
T Consensus 37 ~F~~~G~i~~v~i~~~~-~g~~~g--------------~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~ 99 (100)
T 2do4_A 37 ICKAHGTVKDLRLVTNR-AGKPKG--------------LAYVEYENESQASQAVMKMDGMTIKENIIKVAISNSGPSS 99 (100)
T ss_dssp HHTTTSCEEEEEEEECT-TSCEEE--------------EEEEEESSHHHHHHHHHHHTTEESSSCEEEEEECCCCSCC
T ss_pred HHHhCCCeEEEEEEECC-CCCEEe--------------EEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECCCCCCC
Confidence 48999999999999998 899999 9999999999999999999999999999999999987754
No 20
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=4.1e-18 Score=97.92 Aligned_cols=63 Identities=19% Similarity=0.337 Sum_probs=59.6
Q ss_pred CccCCceeeEEEEEecCCCCCcccccccccccccCcceEEEEEEcCHHHHHHHHHhhCCcEECCEEEEEEeeCCCCC
Q psy16913 1 MFLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQIGMKRLKVQLKRPKDA 77 (81)
Q Consensus 1 lF~~~G~i~~v~i~~~~~~~~~kg~~~~~~~~~~~~~~~~fV~f~~~~~A~~Ai~~lng~~i~g~~i~V~~a~~~~~ 77 (81)
+|++||+|.++.++.++.++.++| ||||+|.+.++|++|++.|||..+.|+.|.|+++.++..
T Consensus 43 ~f~~~G~i~~v~i~~~~~~~~~~g--------------~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~ 105 (106)
T 1p27_B 43 KFAEYGEIKNIHLNLDRRTGYLKG--------------YTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWCFVRGP 105 (106)
T ss_dssp HHGGGSCEEEEEEEECTTTSSEEE--------------EEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEESEESSC
T ss_pred HHhccCCeEEEEEEecCCCCceee--------------EEEEEECCHHHHHHHHHHhcCCEECCcEEEEEeecCCCC
Confidence 489999999999999999999999 999999999999999999999999999999999988754
No 21
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=8.5e-18 Score=95.58 Aligned_cols=63 Identities=21% Similarity=0.292 Sum_probs=57.4
Q ss_pred CccCCceeeEEEEEecCCCCCcccccccccccccCcceEEEEEEcCHHHHHHHHHhhCCcEECCEEEEEEeeCCCCCCCC
Q psy16913 1 MFLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQIGMKRLKVQLKRPKDAARP 80 (81)
Q Consensus 1 lF~~~G~i~~v~i~~~~~~~~~kg~~~~~~~~~~~~~~~~fV~f~~~~~A~~Ai~~lng~~i~g~~i~V~~a~~~~~~~~ 80 (81)
+|++||+|.+++|+.++.+ +| ||||+|.++++|++|++.|||..++|+.|+|++|+++....|
T Consensus 33 ~F~~~G~v~~v~i~~~~~~---rg--------------~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~V~~a~~~~~~~~ 95 (96)
T 2dgx_A 33 AFARHGKVKSVELSPHTDY---QL--------------KAVVQMENLQDAIGAVNSLHRYKIGSKKILVSLATGASGPSS 95 (96)
T ss_dssp HHHHHSCEEEEEECSCCST---TC--------------CEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCCSSCCCC
T ss_pred hccccCcEEEEEEEeCCCC---Ce--------------EEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEcCCCCCCCC
Confidence 4889999999999999855 78 999999999999999999999999999999999988776543
No 22
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.73 E-value=9e-18 Score=92.91 Aligned_cols=59 Identities=29% Similarity=0.560 Sum_probs=56.3
Q ss_pred CccCCceeeEEEEEecCCCCCcccccccccccccCcceEEEEEEcCHHHHHHHHHhhCCcEECCEEEEEEeeC
Q psy16913 1 MFLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQIGMKRLKVQLKR 73 (81)
Q Consensus 1 lF~~~G~i~~v~i~~~~~~~~~kg~~~~~~~~~~~~~~~~fV~f~~~~~A~~Ai~~lng~~i~g~~i~V~~a~ 73 (81)
+|++||+|.++.++.++.++.++| ||||+|.++++|++|++.|||..++|+.|+|++|+
T Consensus 27 ~f~~~G~i~~v~i~~~~~~~~~~g--------------~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ak 85 (85)
T 3mdf_A 27 AFIPFGDITDIQIPLDYETEKHRG--------------FAFVEFELAEDAAAAIDNMNESELFGRTIRVNLAK 85 (85)
T ss_dssp HHGGGSCEEEEECCEETTTTEECS--------------EEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred HHhccCCEEEEEEEECCCCCcccc--------------EEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcC
Confidence 489999999999999988999999 99999999999999999999999999999999985
No 23
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.73 E-value=7.7e-18 Score=93.62 Aligned_cols=64 Identities=23% Similarity=0.411 Sum_probs=58.8
Q ss_pred CccCCceeeEEEEEecCCCCC-cccccccccccccCcceEEEEEEcCHHHHHHHHHhhCCcEECCEEEEEEeeCCCCCC
Q psy16913 1 MFLPFGNVISSKVFIDRATNQ-SKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQIGMKRLKVQLKRPKDAA 78 (81)
Q Consensus 1 lF~~~G~i~~v~i~~~~~~~~-~kg~~~~~~~~~~~~~~~~fV~f~~~~~A~~Ai~~lng~~i~g~~i~V~~a~~~~~~ 78 (81)
+|++||+|.++.++.++.++. ++| ||||+|.++++|++|++.|||..++|+.|.|+++.+...+
T Consensus 24 ~F~~~G~i~~~~i~~~~~~~~~~~g--------------~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~R 88 (88)
T 4a8x_A 24 IFSTYGKIKMIDMPVERMHPHLSKG--------------YAYVEFENPDEAEKALKHMDGGQIDGQEITATAVLAPWPR 88 (88)
T ss_dssp HHHTTSCEEEEECCEETTEEEEECS--------------EEEEEESSHHHHHHHHHHHTTCEETTEECEEEEECCCCCC
T ss_pred HHHhCCCEEEEEEEeCCCCCCCCCc--------------EEEEEEecHHHHHHHHHHcCCCeECCeEEEEEECCCCCCC
Confidence 489999999999999987766 888 9999999999999999999999999999999999887653
No 24
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=4.8e-18 Score=97.32 Aligned_cols=64 Identities=27% Similarity=0.396 Sum_probs=59.9
Q ss_pred CccCCceeeEEEEEecCCCCCcccccccccccccCcceEEEEEEcCHHHHHHHHHhhCCcEECCEEEEEEeeCCCCCC
Q psy16913 1 MFLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQIGMKRLKVQLKRPKDAA 78 (81)
Q Consensus 1 lF~~~G~i~~v~i~~~~~~~~~kg~~~~~~~~~~~~~~~~fV~f~~~~~A~~Ai~~lng~~i~g~~i~V~~a~~~~~~ 78 (81)
+|++||+|.++.|+.++.++.++| ||||+|.+.++|++|++.|||..+.|+.|.|+++.++..+
T Consensus 33 ~f~~~G~i~~v~i~~~~~~~~~~g--------------~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~~~ 96 (103)
T 2dnm_A 33 VFEKYGRVGDVYIPREPHTKAPRG--------------FAFVRFHDRRDAQDAEAAMDGAELDGRELRVQVARYGRRD 96 (103)
T ss_dssp HHTTTSCEEEEECCBCSSSCSBCS--------------CEEEEESSSSHHHHHHHHHSSCCBTTBCCEEEECSSCCSC
T ss_pred HHHhcCCEEEEEEEeCCCCCCCCe--------------EEEEEECCHHHHHHHHHHcCCCEECCcEEEEEECCcCCCC
Confidence 489999999999999998999999 9999999999999999999999999999999999876543
No 25
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.72 E-value=2e-17 Score=93.15 Aligned_cols=59 Identities=25% Similarity=0.411 Sum_probs=56.5
Q ss_pred CccCCceeeEEEEEecCCCCCcccccccccccccCcceEEEEEEcCHHHHHHHHHhhCCcEECCEEEEEEeeC
Q psy16913 1 MFLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQIGMKRLKVQLKR 73 (81)
Q Consensus 1 lF~~~G~i~~v~i~~~~~~~~~kg~~~~~~~~~~~~~~~~fV~f~~~~~A~~Ai~~lng~~i~g~~i~V~~a~ 73 (81)
+|++||+|.++.++.++.++.++| ||||+|.++++|++|++.|||..+.|+.|+|++|+
T Consensus 36 ~f~~~G~v~~v~i~~~~~~~~~~g--------------~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ak 94 (94)
T 2e5h_A 36 IFSKYGKVVKVTIMKDKDTRKSKG--------------VAFILFLDKDSAQNCTRAINNKQLFGRVIKASIAI 94 (94)
T ss_dssp HTTTTSCEEEEEECCCSSSCCCTT--------------CEEEEESCHHHHHHHHHHTTTEEETTEEEEEEECC
T ss_pred HHHhcCCeEEEEEEeCCCCCCccc--------------EEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEecC
Confidence 489999999999999998899999 99999999999999999999999999999999985
No 26
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.72 E-value=1.3e-17 Score=97.68 Aligned_cols=62 Identities=35% Similarity=0.602 Sum_probs=55.9
Q ss_pred CccCCceeeEEEEEecCCCCCcccccccccccccCcceEEEEEEcCHHHHHHHHHhhCCcEECCEEEEEEeeCCCCCC
Q psy16913 1 MFLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQIGMKRLKVQLKRPKDAA 78 (81)
Q Consensus 1 lF~~~G~i~~v~i~~~~~~~~~kg~~~~~~~~~~~~~~~~fV~f~~~~~A~~Ai~~lng~~i~g~~i~V~~a~~~~~~ 78 (81)
+|++||+|.+|+|++++ +.++| ||||+|.++++|++||+.|||..++|+.|.|+++.++..+
T Consensus 25 ~F~~~G~v~~v~i~~d~--~~~kg--------------~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~~~~~~ 86 (115)
T 4f25_A 25 TFSAFGNILSCKVVCDE--NGSKG--------------YGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKER 86 (115)
T ss_dssp HHGGGSCEEEEEEEEET--TEEEE--------------EEEEEESCHHHHHHHHHHHTTCEETTEECEEEESSCCCC-
T ss_pred HHhccCCEEEEEEeecC--CCCCc--------------eEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCcccc
Confidence 58999999999999986 34678 9999999999999999999999999999999999887643
No 27
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=5.9e-18 Score=97.13 Aligned_cols=65 Identities=28% Similarity=0.416 Sum_probs=60.9
Q ss_pred CccCCceeeEEEEEecCCCCCcccccccccccccCcceEEEEEEcCHHHHHHHHHhhCCcEECCEEEEEEeeCCCCCCC
Q psy16913 1 MFLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQIGMKRLKVQLKRPKDAAR 79 (81)
Q Consensus 1 lF~~~G~i~~v~i~~~~~~~~~kg~~~~~~~~~~~~~~~~fV~f~~~~~A~~Ai~~lng~~i~g~~i~V~~a~~~~~~~ 79 (81)
+|++||+|.++.++.++.++.++| ||||+|.+.++|++|++.|||..+.|+.|.|+++.++..+.
T Consensus 35 ~F~~~G~i~~v~i~~~~~~~~~~g--------------~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~~ 99 (105)
T 1x5u_A 35 LFLQAGPVVNTHMPKDRVTGQHQG--------------YGFVEFLSEEDADYAIKIMDMIKLYGKPIRVNKASAHNKNL 99 (105)
T ss_dssp HHHTTSCEEEEECCBCSSSCSBCS--------------CEEEEESSHHHHHHHHHHSSSCBCSSCBCEEEETTTTSCCC
T ss_pred HHHhcCCeEEEEEEecCCCCcCCc--------------EEEEEECCHHHHHHHHHHhCCCeECCeEEEEEECCCCCcCC
Confidence 489999999999999998999999 99999999999999999999999999999999998877643
No 28
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.72 E-value=2.3e-17 Score=100.70 Aligned_cols=65 Identities=18% Similarity=0.312 Sum_probs=60.9
Q ss_pred CccCCceeeEEEEEecCCCCCcccccccccccccCcceEEEEEEcCHHHHHHHHHhhCCcEECCEEEEEEeeCCCCCCC
Q psy16913 1 MFLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQIGMKRLKVQLKRPKDAAR 79 (81)
Q Consensus 1 lF~~~G~i~~v~i~~~~~~~~~kg~~~~~~~~~~~~~~~~fV~f~~~~~A~~Ai~~lng~~i~g~~i~V~~a~~~~~~~ 79 (81)
+|++||+|.+|.|+.++.++.++| ||||+|.+.++|++||+.||+..|.|+.|.|++|.++...+
T Consensus 59 ~F~~~G~i~~v~i~~~~~~~~~~g--------------~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~~~ 123 (156)
T 1h2v_Z 59 LFSKSGDIKKIIMGLDKMKKTACG--------------FCFVEYYSRADAENAMRYINGTRLDDRIIRTDWDAGFKEGR 123 (156)
T ss_dssp HHGGGSCEEEEEEEECTTTCCEEE--------------EEEEEESSHHHHHHHHHHTTTSEETTEECEEEEESCCCTTC
T ss_pred HHHhcCCeEEEEEEecCCCCccce--------------EEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCCCCCcC
Confidence 589999999999999999999999 99999999999999999999999999999999998876544
No 29
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.72 E-value=1.2e-17 Score=94.85 Aligned_cols=65 Identities=22% Similarity=0.432 Sum_probs=59.0
Q ss_pred CccCCceeeEEEEEecCC---CCCcccccccccccccCcceEEEEEEcCHHHHHHHHHhhCCcEECCEEEEEEeeCCCCC
Q psy16913 1 MFLPFGNVISSKVFIDRA---TNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQIGMKRLKVQLKRPKDA 77 (81)
Q Consensus 1 lF~~~G~i~~v~i~~~~~---~~~~kg~~~~~~~~~~~~~~~~fV~f~~~~~A~~Ai~~lng~~i~g~~i~V~~a~~~~~ 77 (81)
+|++||+|.++.|+.++. ++.++| ||||+|.+.++|++|++.|||..+.|+.|.|+++.++..
T Consensus 25 ~F~~~G~i~~v~i~~~~~~~gt~~~~g--------------~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~ 90 (98)
T 2cpf_A 25 VFSKVGAIKSCTISKKKNKAGVLLSMG--------------FGFVEYKKPEQAQKALKQLQGHTVDGHKLEVRISERATK 90 (98)
T ss_dssp HHHTTSCEEEEEEEEEECTTCCEEEEE--------------EEEEEESSHHHHHHHHHHSTTCEETTEECEEECSSCSSC
T ss_pred HHHhcCCeEEEEEEecCCCCCCcCccc--------------EEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEccCCCC
Confidence 488999999999999886 568888 999999999999999999999999999999999988765
Q ss_pred CC
Q psy16913 78 AR 79 (81)
Q Consensus 78 ~~ 79 (81)
..
T Consensus 91 ~~ 92 (98)
T 2cpf_A 91 PA 92 (98)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 30
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=1.9e-17 Score=94.75 Aligned_cols=63 Identities=40% Similarity=0.679 Sum_probs=58.9
Q ss_pred CccCCceeeEEEEEecCCCCCcccccccccccccCcceEEEEEEcCHHHHHHHHHhhCCcEECCEEEEEEeeCCCCCCC
Q psy16913 1 MFLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQIGMKRLKVQLKRPKDAAR 79 (81)
Q Consensus 1 lF~~~G~i~~v~i~~~~~~~~~kg~~~~~~~~~~~~~~~~fV~f~~~~~A~~Ai~~lng~~i~g~~i~V~~a~~~~~~~ 79 (81)
+|++||+|.++.|+.+ ++.++| ||||+|.+.++|++|++.|||..+.|+.|.|+++.++..+.
T Consensus 35 ~F~~~G~i~~v~i~~~--~g~~~g--------------~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~~~~ 97 (103)
T 2d9p_A 35 AFSPFGTITSAKVMME--GGRSKG--------------FGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQ 97 (103)
T ss_dssp TTTTTSCEEEEEEEEC--SSSEEE--------------EEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECSSCCCCC
T ss_pred HHHhcCCEEEEEEEcC--CCCcCE--------------EEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEecccccCC
Confidence 6999999999999998 788888 99999999999999999999999999999999998877654
No 31
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.72 E-value=3.8e-18 Score=97.68 Aligned_cols=60 Identities=22% Similarity=0.446 Sum_probs=55.6
Q ss_pred CccCCce--eeEEEEEecCCCCCcccccccccccccCcceEEEEEEcCHHHHHHHHHhhCCc----EECCEEEEEEeeCC
Q psy16913 1 MFLPFGN--VISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGF----QIGMKRLKVQLKRP 74 (81)
Q Consensus 1 lF~~~G~--i~~v~i~~~~~~~~~kg~~~~~~~~~~~~~~~~fV~f~~~~~A~~Ai~~lng~----~i~g~~i~V~~a~~ 74 (81)
+|++||. |.+|++++|+.||+++| ||||+|.++++|++|++.|||. .++||+|.|+||++
T Consensus 29 ~F~~~G~i~v~~v~i~~d~~tg~srG--------------~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~i~V~~Aks 94 (95)
T 2lkz_A 29 ALSPYASLAVNNIRLIKDKQTQQNRG--------------FAFVQLSSAMDASQLLQILQSLHPPLKIDGKTIGVDFAKS 94 (95)
T ss_dssp HSTTTCCCCGGGEECCCCSSSSSCSS--------------EEEEECSSSHHHHHHHHHHHSSSSCEEETTEEEEEEECCC
T ss_pred HHHhhCCccEEEEEEEecCCCCCCce--------------EeEEEECCHHHHHHHHHHhcCCCCCceECCEEEEEEEccC
Confidence 4899995 67999999999999999 9999999999999999999997 59999999999975
No 32
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=1.9e-17 Score=93.31 Aligned_cols=60 Identities=25% Similarity=0.499 Sum_probs=57.2
Q ss_pred CccCCceeeEEEEEecCCCCCcccccccccccccCcceEEEEEEcCHHHHHHHHHhhCCcEECCEEEEEEeeCC
Q psy16913 1 MFLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQIGMKRLKVQLKRP 74 (81)
Q Consensus 1 lF~~~G~i~~v~i~~~~~~~~~kg~~~~~~~~~~~~~~~~fV~f~~~~~A~~Ai~~lng~~i~g~~i~V~~a~~ 74 (81)
+|++||+|.++.++.++.++.++| ||||+|.+.++|++|++.|||..++|+.|.|+++++
T Consensus 35 ~f~~~G~v~~v~i~~~~~~~~~~g--------------~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 94 (95)
T 2cqc_A 35 VFSKYGPIADVSIVYDQQSRRSRG--------------FAFVYFENVDDAKEAKERANGMELDGRRIRVSGPSS 94 (95)
T ss_dssp HHHTTSCEEEEEEEECSSSSSEEE--------------EEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCSC
T ss_pred HHHhcCCeeEEEEEEcCCCCCccc--------------EEEEEECCHHHHHHHHHHhCCCEECCEEEEEEecCC
Confidence 489999999999999998899999 999999999999999999999999999999999875
No 33
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.72 E-value=1.4e-17 Score=96.31 Aligned_cols=65 Identities=26% Similarity=0.455 Sum_probs=60.9
Q ss_pred CccCCceeeEEEEEecCCCCCcccccccccccccCcceEEEEEEcCHHHHHHHHHhhC------CcEECCEEEEEEeeCC
Q psy16913 1 MFLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMN------GFQIGMKRLKVQLKRP 74 (81)
Q Consensus 1 lF~~~G~i~~v~i~~~~~~~~~kg~~~~~~~~~~~~~~~~fV~f~~~~~A~~Ai~~ln------g~~i~g~~i~V~~a~~ 74 (81)
+|++||+|.+|.|+.++.++.++| ||||+|.+.++|++|++.|| |..++|+.|.|+++.+
T Consensus 35 ~F~~~G~i~~v~i~~~~~~g~~~g--------------~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g~~l~v~~a~~ 100 (111)
T 1x4h_A 35 VLQQFGDLKYVRVVLHPDTEHSKG--------------CAFAQFMTQEAAQKCLAAASLEAEGGGLKLDGRQLKVDLAVT 100 (111)
T ss_dssp HHHTTSCEEEEECCBCSSSCCBCS--------------EEEEEESSHHHHHHHHHHHCTTTTTCCEESSSCEEEEECCCC
T ss_pred HHHhcCCeEEEEEEecCCCCCCcc--------------EEEEEECCHHHHHHHHHHhccccccCCcEEcCEEEEEEECCC
Confidence 489999999999999999999999 99999999999999999999 9999999999999988
Q ss_pred CCCCC
Q psy16913 75 KDAAR 79 (81)
Q Consensus 75 ~~~~~ 79 (81)
+..+.
T Consensus 101 ~~~~~ 105 (111)
T 1x4h_A 101 RDEAA 105 (111)
T ss_dssp CCCCC
T ss_pred CccCC
Confidence 76643
No 34
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.72 E-value=1.1e-17 Score=95.90 Aligned_cols=65 Identities=29% Similarity=0.446 Sum_probs=60.4
Q ss_pred CccCCceeeEEEEEecCCCCCcccccccccccccCcceEEEEEEcCHHHHHHHHHhhCCcEECC---EEEEEEeeCCCCC
Q psy16913 1 MFLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQIGM---KRLKVQLKRPKDA 77 (81)
Q Consensus 1 lF~~~G~i~~v~i~~~~~~~~~kg~~~~~~~~~~~~~~~~fV~f~~~~~A~~Ai~~lng~~i~g---~~i~V~~a~~~~~ 77 (81)
+|++||+|.++.|+.++ ++.++| ||||+|.+.++|++|++.|||..+.| +.|.|+++.++..
T Consensus 35 ~F~~~G~i~~v~i~~~~-~g~~~g--------------~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~V~~a~~~~~ 99 (105)
T 2dnh_A 35 LFQPFGVIDECTVLRGP-DGSSKG--------------CAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVVKFADTDKE 99 (105)
T ss_dssp HHTTTSCEEEEEEEECS-SSCEEE--------------EEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCEEEESCSSCC
T ss_pred HHHhcCCeEEEEEEECC-CCCcCc--------------EEEEEeCCHHHHHHHHHHHcCCccCCCCCccEEEEECccCcc
Confidence 58999999999999998 788899 99999999999999999999999998 9999999998877
Q ss_pred CCC
Q psy16913 78 ARP 80 (81)
Q Consensus 78 ~~~ 80 (81)
+.+
T Consensus 100 ~~~ 102 (105)
T 2dnh_A 100 SGP 102 (105)
T ss_dssp CSC
T ss_pred cCC
Confidence 654
No 35
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.72 E-value=8e-18 Score=100.70 Aligned_cols=63 Identities=25% Similarity=0.520 Sum_probs=60.0
Q ss_pred CccCCceeeEEEEEecCCCCCcccccccccccccCcceEEEEEEcCHHHHHHHHHhhCCcEECCEEEEEEeeCCCCC
Q psy16913 1 MFLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQIGMKRLKVQLKRPKDA 77 (81)
Q Consensus 1 lF~~~G~i~~v~i~~~~~~~~~kg~~~~~~~~~~~~~~~~fV~f~~~~~A~~Ai~~lng~~i~g~~i~V~~a~~~~~ 77 (81)
+|++||+|.+++|+.++.++.++| ||||+|.+.++|++|++.|||..|+|+.|.|+++.++++
T Consensus 66 ~F~~~G~I~~v~i~~d~~tg~~~G--------------~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V~~a~~~~p 128 (129)
T 2kxn_B 66 VFSKYGPIADVSIVYDQQSRRSRG--------------FAFVYFENVDDAKEAKERANGMELDGRRIRVDFSITKRP 128 (129)
T ss_dssp HHTTTSCEEEEEEECCSSSSCCCC--------------EEEEEESCHHHHHHHHHHHTTCCSSSSCCEESCCSSSSC
T ss_pred HHHhcCCeEEEEEEecCCCCccce--------------EEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEecCCCC
Confidence 489999999999999998999999 999999999999999999999999999999999998765
No 36
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.72 E-value=7.7e-18 Score=97.88 Aligned_cols=63 Identities=30% Similarity=0.646 Sum_probs=59.6
Q ss_pred CccCCceeeEEEEEecCCCCCcccccccccccccCcceEEEEEEcCHHHHHHHHHhhCCcEECCEEEEEEeeCCCCC
Q psy16913 1 MFLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQIGMKRLKVQLKRPKDA 77 (81)
Q Consensus 1 lF~~~G~i~~v~i~~~~~~~~~kg~~~~~~~~~~~~~~~~fV~f~~~~~A~~Ai~~lng~~i~g~~i~V~~a~~~~~ 77 (81)
+|++||+|.++.++.++.++.++| ||||+|.+.++|++|++.|||..+.|+.|+|+++.++.+
T Consensus 46 ~F~~~G~i~~v~i~~~~~~g~~~g--------------~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a~~k~d 108 (108)
T 2jrs_A 46 IFEPFGRIESIQLMMDSETGRSKG--------------YGFITFSDSECAKKALEQLNGFELAGRPMKVGHVTERTD 108 (108)
T ss_dssp HHTTTSCEEEEEEEEETTTTEEEE--------------EEEEEESCHHHHHHHHHHHTTCCSSSSCCEEECSCSSCC
T ss_pred HHHhcCCeEEEEEEEcCCCCccce--------------EEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEcccCCC
Confidence 489999999999999998999999 999999999999999999999999999999999988753
No 37
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=4.3e-18 Score=97.27 Aligned_cols=65 Identities=32% Similarity=0.553 Sum_probs=60.4
Q ss_pred CccCCceeeEEEEEecCCCCCcccccccccccccCcceEEEEEEcCHHHHHHHHHhhCCcEECCEEEEEEeeCCCCCCC
Q psy16913 1 MFLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQIGMKRLKVQLKRPKDAAR 79 (81)
Q Consensus 1 lF~~~G~i~~v~i~~~~~~~~~kg~~~~~~~~~~~~~~~~fV~f~~~~~A~~Ai~~lng~~i~g~~i~V~~a~~~~~~~ 79 (81)
+|++||+|.++.|+.++.++.++| ||||+|.++++|++|++.|||..++|+.|+|+++.++...+
T Consensus 32 ~f~~~G~i~~v~i~~~~~~~~~~g--------------~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~~~ 96 (102)
T 1x5s_A 32 VFSKYGQISEVVVVKDRETQRSRG--------------FGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQAGKSSDNR 96 (102)
T ss_dssp HHHHHSCCCEEEECCCSSSCSCCS--------------EEEEECSSHHHHHHHHHHHTTCCTTSCCCEEEEEECCCCCC
T ss_pred HHHhcCCeEEEEEEeCCCCCCccc--------------EEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCCCCCCC
Confidence 488999999999999998999999 99999999999999999999999999999999998876543
No 38
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.71 E-value=1.6e-17 Score=99.56 Aligned_cols=65 Identities=42% Similarity=0.627 Sum_probs=60.8
Q ss_pred CccCCceeeEEEEEecCCCCCcccccccccccccCcceEEEEEEcCHHHHHHHHHhhCCcEECCEEEEEEeeCCCCCCC
Q psy16913 1 MFLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQIGMKRLKVQLKRPKDAAR 79 (81)
Q Consensus 1 lF~~~G~i~~v~i~~~~~~~~~kg~~~~~~~~~~~~~~~~fV~f~~~~~A~~Ai~~lng~~i~g~~i~V~~a~~~~~~~ 79 (81)
+|+.||+|.+|+|+.++.++.++| ||||+|.+.++|++|++.|||..+.|+.|+|+++.++..+.
T Consensus 62 ~F~~~G~i~~v~i~~~~~~~~~~g--------------~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~~ 126 (139)
T 1u6f_A 62 LFERYGPIESVKIVCDRETRQSRG--------------YGFVKFQSGSSAQQAIAGLNGFNILNKRLKVALAASGHQRP 126 (139)
T ss_dssp HHHHHSCEEEEEEEEETTTTEEEE--------------EEEEEESSHHHHHHHHHHTTTEECSSCEEEEEESSCCCCCC
T ss_pred HHHhcCCeEEEEEEEcCCCCCcce--------------EEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCCCCCCC
Confidence 488999999999999998999999 99999999999999999999999999999999998876654
No 39
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.71 E-value=1.6e-17 Score=95.51 Aligned_cols=65 Identities=22% Similarity=0.381 Sum_probs=60.3
Q ss_pred CccCCceeeEEEEEec-CCCCCcccccccccccccCcceEEEEEEcCHHHHHHHHHhh-CCcEECCEEEEEEeeCCCCCC
Q psy16913 1 MFLPFGNVISSKVFID-RATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAM-NGFQIGMKRLKVQLKRPKDAA 78 (81)
Q Consensus 1 lF~~~G~i~~v~i~~~-~~~~~~kg~~~~~~~~~~~~~~~~fV~f~~~~~A~~Ai~~l-ng~~i~g~~i~V~~a~~~~~~ 78 (81)
+|++||+|.+|.|+.+ +.++.++| ||||+|.+.++|++|++.| ||..+.|+.|.|+++.++...
T Consensus 35 ~F~~~G~i~~v~i~~~~~~~~~~~g--------------~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~v~~a~~~~~~ 100 (107)
T 2cph_A 35 LFSTFGELKTVRLPKKMTGTGAHRG--------------FGFVDFITKQDAKKAFNALCHSTHLYGRRLVLEWADSEVTV 100 (107)
T ss_dssp HHHTTSCEEEEECCCCCSSSCSSCS--------------EEEEEESSHHHHHHHHHHHHTCCBSSSCBCEEEECCCCCCC
T ss_pred HHHccCCeEEEEEecCCCCCCCcCc--------------eEEEEECCHHHHHHHHHHhccCCeECCCEEEEEeCCCCCCC
Confidence 4899999999999999 78899999 9999999999999999999 999999999999999887654
Q ss_pred C
Q psy16913 79 R 79 (81)
Q Consensus 79 ~ 79 (81)
.
T Consensus 101 ~ 101 (107)
T 2cph_A 101 Q 101 (107)
T ss_dssp C
T ss_pred C
Confidence 3
No 40
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.71 E-value=3.6e-17 Score=91.17 Aligned_cols=61 Identities=23% Similarity=0.401 Sum_probs=57.6
Q ss_pred CccCCceeeEEEEEecCCCCCcccccccccccccCcceEEEEEEcCHHHHHHHHHhhCCcEECCEEEEEEeeCCCC
Q psy16913 1 MFLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQIGMKRLKVQLKRPKD 76 (81)
Q Consensus 1 lF~~~G~i~~v~i~~~~~~~~~kg~~~~~~~~~~~~~~~~fV~f~~~~~A~~Ai~~lng~~i~g~~i~V~~a~~~~ 76 (81)
+|++||+|.++.++.++.++.++| ||||+|.++++|++|+ .|||..+.|+.|.|++++++.
T Consensus 26 ~F~~~G~i~~v~i~~~~~~~~~~g--------------~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~~~~ 86 (89)
T 3ucg_A 26 HFHGCGSVNRVTILCDKFSGHPKG--------------FAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKRTNR 86 (89)
T ss_dssp HHGGGCCEEEEEEEESCSSSSCCE--------------EEEEEESSTHHHHHHG-GGTTCEETTEECEEEETTTTS
T ss_pred HHHhCCCEEEEEEEecCCCCCcce--------------EEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEccCCC
Confidence 489999999999999998999999 9999999999999999 899999999999999998754
No 41
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.71 E-value=5.7e-17 Score=92.89 Aligned_cols=63 Identities=24% Similarity=0.464 Sum_probs=58.3
Q ss_pred CccCCceeeEEEEEecCCCCCcccccccccccccCcceEEEEEEcCHHHHHHHHHhhCCcEECCEEEEEEeeCCCCCCC
Q psy16913 1 MFLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQIGMKRLKVQLKRPKDAAR 79 (81)
Q Consensus 1 lF~~~G~i~~v~i~~~~~~~~~kg~~~~~~~~~~~~~~~~fV~f~~~~~A~~Ai~~lng~~i~g~~i~V~~a~~~~~~~ 79 (81)
+|++|| |.+|.|+.++.++.++| ||||+|.+.++|++|+ .|||..+.|+.|.|+++.++..+.
T Consensus 35 ~F~~~g-i~~v~i~~~~~~g~~~g--------------~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~~~~~~~ 97 (103)
T 2dng_A 35 IFKDLS-IRSVRLVRDKDTDKFKG--------------FCYVEFDEVDSLKEAL-TYDGALLGDRSLRVDIAEGRKQDK 97 (103)
T ss_dssp HTTTSC-EEEEEEEECSSSCSEEE--------------EEEEEESSHHHHHHHG-GGTTCEETTEECEEEECCCCCCCC
T ss_pred HHHhCC-ceEEEEeecCCCCccce--------------EEEEEECCHHHHHHHH-hhCCCeECCeEEEEEEecCCCCCC
Confidence 489997 99999999998999999 9999999999999999 899999999999999998876543
No 42
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.70 E-value=6.1e-17 Score=94.12 Aligned_cols=60 Identities=20% Similarity=0.223 Sum_probs=55.1
Q ss_pred CccCCceeeEEEEEecCCC-CCcccccccccccccCcceEEEEEEcCHHHHHHHHHhhCCcEECCEEEEEEeeCC
Q psy16913 1 MFLPFGNVISSKVFIDRAT-NQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQIGMKRLKVQLKRP 74 (81)
Q Consensus 1 lF~~~G~i~~v~i~~~~~~-~~~kg~~~~~~~~~~~~~~~~fV~f~~~~~A~~Ai~~lng~~i~g~~i~V~~a~~ 74 (81)
+|++||+|.++.|+.++.+ ++++| ||||+|.++++|.+|++.|||..++||.|.|+++.+
T Consensus 33 ~f~~~G~V~~v~i~~~~~~~~~~~G--------------~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~i~v~~a~~ 93 (105)
T 2pe8_A 33 ECEKYGKVGKCVIFEIPGAPDDEAV--------------RIFLEFERVESAIKAVVDLNGRYFGGRVVKACFYNL 93 (105)
T ss_dssp HGGGGSCEEEEEEEECSSCCTTTSE--------------EEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCH
T ss_pred HHHhcCCEEEEEEecCCCCCCCCcE--------------EEEEEECCHHHHHHHHHHHCCCEECCcEEEEEEcCH
Confidence 3899999999999998754 57888 999999999999999999999999999999999865
No 43
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=2.4e-17 Score=95.75 Aligned_cols=65 Identities=28% Similarity=0.448 Sum_probs=60.3
Q ss_pred CccCCceee--------EEEEEecCCCCCcccccccccccccCcceEEEEEEcCHHHHHHHHHhhCCcEECCEEEEEEee
Q psy16913 1 MFLPFGNVI--------SSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQIGMKRLKVQLK 72 (81)
Q Consensus 1 lF~~~G~i~--------~v~i~~~~~~~~~kg~~~~~~~~~~~~~~~~fV~f~~~~~A~~Ai~~lng~~i~g~~i~V~~a 72 (81)
+|++||.|. .++|+.++.++.++| ||||+|.+.++|++|++.|||..+.|+.|+|+++
T Consensus 35 ~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g--------------~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 100 (113)
T 2cpe_A 35 FFKQCGVVKMNKRTGQPMIHIYLDKETGKPKG--------------DATVSYEDPPTAKAAVEWFDGKDFQGSKLKVSLA 100 (113)
T ss_dssp HHTTTSCBCBCSSSCCBSEECCBCTTTCSBCS--------------EEEEEBSSHHHHHHHHHHHTTCEETTEECEEECS
T ss_pred HHHhcCCEeEccccCccCEEEEEeCCCCCeee--------------EEEEEECCHHHHHHHHHHcCCCccCCCEEEEEEC
Confidence 589999999 699999988999999 9999999999999999999999999999999999
Q ss_pred CCCCCCC
Q psy16913 73 RPKDAAR 79 (81)
Q Consensus 73 ~~~~~~~ 79 (81)
.++..+.
T Consensus 101 ~~~~~~~ 107 (113)
T 2cpe_A 101 RKKPPMN 107 (113)
T ss_dssp SCCCCST
T ss_pred CCCCCCC
Confidence 8876543
No 44
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.70 E-value=1.7e-17 Score=101.19 Aligned_cols=65 Identities=31% Similarity=0.466 Sum_probs=60.6
Q ss_pred CccCCceeeEEEEEecCCCCCcccccccccccccCcceEEEEEEcCHHHHHHHHHhhCCcEECCEEEEEEeeCCCCCCC
Q psy16913 1 MFLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQIGMKRLKVQLKRPKDAAR 79 (81)
Q Consensus 1 lF~~~G~i~~v~i~~~~~~~~~kg~~~~~~~~~~~~~~~~fV~f~~~~~A~~Ai~~lng~~i~g~~i~V~~a~~~~~~~ 79 (81)
+|++||+|.++.|+.|+.+|.++| ||||+|.+.++|++|++.|||..+.|+.|.|+++.++..+.
T Consensus 90 ~F~~~G~v~~~~i~~~~~~g~~~g--------------~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~~ 154 (158)
T 2kn4_A 90 VFEKYGRVGDVYIPRDRYTKESRG--------------FAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRPPD 154 (158)
T ss_dssp HHHHHSCEEEEECCCCSSCTTSCC--------------EEEEEESBHHHHHHHHHHSTTEESSSSEEEEEEECCSSCCC
T ss_pred HHHhcCCeEEEEEeecCCCCccce--------------EEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCCCCCCC
Confidence 488999999999999998999999 99999999999999999999999999999999998876543
No 45
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=7.1e-17 Score=92.62 Aligned_cols=62 Identities=19% Similarity=0.403 Sum_probs=57.9
Q ss_pred CccCCceeeEEEEEecCCC-CCcccccccccccccCcceEEEEEEcCHHHHHHHHHhhCCcEECCEEEEEEeeCCCCCC
Q psy16913 1 MFLPFGNVISSKVFIDRAT-NQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQIGMKRLKVQLKRPKDAA 78 (81)
Q Consensus 1 lF~~~G~i~~v~i~~~~~~-~~~kg~~~~~~~~~~~~~~~~fV~f~~~~~A~~Ai~~lng~~i~g~~i~V~~a~~~~~~ 78 (81)
+|++|| |.+|.|+.++.+ +.++| ||||+|.+.++|++|+ .|||..+.|+.|.|+++.++..+
T Consensus 35 ~F~~~G-i~~v~i~~~~~~~g~~~g--------------~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~~~~~~ 97 (104)
T 1wi8_A 35 FFRGLN-ISAVRLPREPSNPERLKG--------------FGYAEFEDLDSLLSAL-SLNEESLGNKRIRVDVADQAQDK 97 (104)
T ss_dssp HTTTSC-EEEEECCBCSSCTTSBCS--------------CEEEEESSHHHHHHHH-GGGTCEETTEECEEEECCCCCCC
T ss_pred HHHHCC-ceEEEEecCCCCCCCcCe--------------EEEEEECCHHHHHHHH-hcCCCEeCCcEEEEEEccCCCCC
Confidence 589999 999999999987 89999 9999999999999999 89999999999999999887654
No 46
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.69 E-value=4.2e-17 Score=95.33 Aligned_cols=59 Identities=78% Similarity=1.237 Sum_probs=55.9
Q ss_pred CccCCceeeEEEEEecCCCCCcccccccccccccCcceEEEEEEcCHHHHHHHHHhhCCcEECCEEEEEEeeC
Q psy16913 1 MFLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQIGMKRLKVQLKR 73 (81)
Q Consensus 1 lF~~~G~i~~v~i~~~~~~~~~kg~~~~~~~~~~~~~~~~fV~f~~~~~A~~Ai~~lng~~i~g~~i~V~~a~ 73 (81)
+|++||+|.+++|+.++.++.++| ||||+|.+.++|++|++.|||..++|+.|+|++++
T Consensus 60 ~F~~~G~i~~~~i~~~~~~g~~~g--------------~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ak 118 (118)
T 2khc_A 60 TFLPFGNVISAKVFIDKQTSLSKC--------------FGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQLKK 118 (118)
T ss_dssp HTTTSCEEEEEEECCCSSSSCCCC--------------EEEEEEESSHHHHHHHHHCCCCEETTEECCEEEC-
T ss_pred HHHhcCCEEEEEEEeCCCCCCcCc--------------EEEEEECCHHHHHHHHHHcCCCEECCEEEEEEecC
Confidence 589999999999999998999999 99999999999999999999999999999999974
No 47
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.69 E-value=1.3e-16 Score=92.66 Aligned_cols=62 Identities=23% Similarity=0.360 Sum_probs=57.1
Q ss_pred CccCCceeeEEEEEecCCCCCcccccccccccccCcceEEEEEEcCHHHHHHHHHhhCCcEECCEEEEEEeeCCCCC
Q psy16913 1 MFLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQIGMKRLKVQLKRPKDA 77 (81)
Q Consensus 1 lF~~~G~i~~v~i~~~~~~~~~kg~~~~~~~~~~~~~~~~fV~f~~~~~A~~Ai~~lng~~i~g~~i~V~~a~~~~~ 77 (81)
+|++||+|.++.|+.++ ++.++| ||||+|.+.++|++|++.|||..+.|+.|.|+++.+...
T Consensus 35 ~f~~~G~i~~~~i~~~~-~g~~~g--------------~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 96 (114)
T 2do0_A 35 VFSMAGVVVRADILEDK-DGKSRG--------------IGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKMDERALP 96 (114)
T ss_dssp HHTTTSCEEEEEEEECT-TCSEEE--------------EEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSCCCC
T ss_pred HHHhcCCeEEEEEEECC-CCCeee--------------EEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEEcccCCC
Confidence 58999999999999998 688888 999999999999999999999999999999999975443
No 48
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=5.8e-17 Score=94.58 Aligned_cols=62 Identities=29% Similarity=0.424 Sum_probs=57.6
Q ss_pred CccCCceeeEEEEEecCCCCCcccccccccccccCcceEEEEEEcCHHHHHHHHHhhCCcEECCEEEEEEeeCCCCC
Q psy16913 1 MFLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQIGMKRLKVQLKRPKDA 77 (81)
Q Consensus 1 lF~~~G~i~~v~i~~~~~~~~~kg~~~~~~~~~~~~~~~~fV~f~~~~~A~~Ai~~lng~~i~g~~i~V~~a~~~~~ 77 (81)
+|++||+|.+++|+.++.++.++| ||||+|.+.++|++|++.+|+ .+.|+.|.|+++.++..
T Consensus 37 ~F~~~G~i~~v~i~~~~~~~~~~g--------------~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~V~~a~~~~~ 98 (116)
T 2cqd_A 37 YFEGFGDIEEAVVITDRQTGKSRG--------------YGFVTMADRAAAERACKDPNP-IIDGRKANVNLAYLGAK 98 (116)
T ss_dssp HHHTTSCEEEEEESCCSSSCCCCS--------------EEEEEESSHHHHHHHHTCSSC-EETTEECEEEESTTTCC
T ss_pred HHHhCCCeeEEEEEEcCCCCccce--------------EEEEEECCHHHHHHHHHhCCC-cCCCEEEEEEEcccCCC
Confidence 489999999999999998999999 999999999999999999998 89999999999966543
No 49
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.69 E-value=1.5e-17 Score=95.56 Aligned_cols=65 Identities=22% Similarity=0.296 Sum_probs=60.1
Q ss_pred CccCCceeeEEEEEecCCCCCcccccccccccccCcceEEEEEEcCHHHHHHHHHhhCCcEE---CCEEEEEEeeCCCCC
Q psy16913 1 MFLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQI---GMKRLKVQLKRPKDA 77 (81)
Q Consensus 1 lF~~~G~i~~v~i~~~~~~~~~kg~~~~~~~~~~~~~~~~fV~f~~~~~A~~Ai~~lng~~i---~g~~i~V~~a~~~~~ 77 (81)
+|++||+|.++.|+.++.++.++| ||||+|.+.++|++|++.|||..+ .|+.|.|+++.++..
T Consensus 33 ~F~~~G~i~~v~i~~~~~~g~~~g--------------~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~a~~~~~ 98 (106)
T 2dgp_A 33 LFEEFGKIYELTVLKDRFTGMHKG--------------CAFLTYCERESALKAQSALHEQKTLPGMNRPIQVKPADSESR 98 (106)
T ss_dssp HHHHHSCCCEEECCCCSSSCSCCS--------------EEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCEEEECCCCSC
T ss_pred HHHhcCCeeEEEEEecCCCCCcce--------------EEEEEECCHHHHHHHHHHhcCCcccCCCCceEEEEECCcccc
Confidence 488999999999999999999999 999999999999999999999998 899999999988765
Q ss_pred CC
Q psy16913 78 AR 79 (81)
Q Consensus 78 ~~ 79 (81)
+.
T Consensus 99 ~~ 100 (106)
T 2dgp_A 99 GG 100 (106)
T ss_dssp CC
T ss_pred cC
Confidence 43
No 50
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=9.6e-17 Score=91.84 Aligned_cols=63 Identities=27% Similarity=0.396 Sum_probs=56.6
Q ss_pred CccCCceeeEEEEEecCCCCCcccccccccccccCcceEEEEEEcCHHHHHHHHHhhCCcEECCEEEEEEeeCCCCCCC
Q psy16913 1 MFLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQIGMKRLKVQLKRPKDAAR 79 (81)
Q Consensus 1 lF~~~G~i~~v~i~~~~~~~~~kg~~~~~~~~~~~~~~~~fV~f~~~~~A~~Ai~~lng~~i~g~~i~V~~a~~~~~~~ 79 (81)
+|++||+|.+|.|+.++.+ ++| ||||+|.+.++|++|++.|||..+.|+.|.|+++.++..++
T Consensus 35 ~F~~~G~i~~v~i~~~~~~--~~g--------------~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~~~ 97 (103)
T 2cqi_A 35 LFSQIGPCKSCKMITEHTS--NDP--------------YCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQK 97 (103)
T ss_dssp HHHHHSCEEEEEEECCCCS--SCC--------------EEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCCTTCCC
T ss_pred HHHhcCCEeEEEEEecCCC--CCC--------------EEEEEECCHHHHHHHHHHhCCCCcCCCeEEEEECCCCcccc
Confidence 4889999999999998633 578 99999999999999999999999999999999998876544
No 51
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.69 E-value=2.6e-17 Score=96.69 Aligned_cols=62 Identities=32% Similarity=0.516 Sum_probs=58.2
Q ss_pred CccCCceeeEEEEEecCCCCCcccccccccccccCcceEEEEEEcCHHHHHHHHHhhCCcEECCEEEEEEeeCCCCC
Q psy16913 1 MFLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQIGMKRLKVQLKRPKDA 77 (81)
Q Consensus 1 lF~~~G~i~~v~i~~~~~~~~~kg~~~~~~~~~~~~~~~~fV~f~~~~~A~~Ai~~lng~~i~g~~i~V~~a~~~~~ 77 (81)
+|++||+|.++.|+.++ ++.++| ||||+|.+.++|++|++.|||..+.|+.|.|+++.++..
T Consensus 27 ~F~~~G~i~~v~i~~~~-~g~~~g--------------~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~ 88 (116)
T 2fy1_A 27 VFGKHGPISEVLLIKDR-TSKSRG--------------FAFITFENPADAKNAAKDMNGKSLHGKAIKVEQAKKPSF 88 (116)
T ss_dssp HHHTSSCCSEEEEECST-TTTCCC--------------EEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEECCCSSC
T ss_pred HHHhcCCEEEEEEEECC-CCCccc--------------EEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECCCCCC
Confidence 48999999999999998 899999 999999999999999999999999999999999987653
No 52
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.69 E-value=2.5e-17 Score=101.44 Aligned_cols=61 Identities=21% Similarity=0.310 Sum_probs=58.1
Q ss_pred CccCCc--eeeEEEEEecCCCCCcccccccccccccCcceEEEEEEcCHHHHHHHHHhhCCcEECCEEEEEEeeCCC
Q psy16913 1 MFLPFG--NVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQIGMKRLKVQLKRPK 75 (81)
Q Consensus 1 lF~~~G--~i~~v~i~~~~~~~~~kg~~~~~~~~~~~~~~~~fV~f~~~~~A~~Ai~~lng~~i~g~~i~V~~a~~~ 75 (81)
+|++|| .|.+|+|+.|+.+|+++| ||||+|.+.++|++||+.|||..|+|+.|.|++|.++
T Consensus 75 ~F~~~G~i~v~~v~i~~d~~tg~skG--------------faFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~a~~~ 137 (156)
T 3n9u_C 75 VIRSIGVYDVVELKFAENRANGQSKG--------------YAEVVVASENSVHKLLELLPGKVLNGEKVDVRPATRQ 137 (156)
T ss_dssp HHHHTTCCCEEEEEEEECTTTCCEEE--------------EEEEEESCHHHHHHHHHHSTTCEETTEECEEEECCHH
T ss_pred HHHHHCCccEEEEEEEecCCCCccce--------------EEEEEECCHHHHHHHHHHcCCCEECCeEeEEEEcCCC
Confidence 488999 999999999999999999 9999999999999999999999999999999999764
No 53
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.69 E-value=1.8e-17 Score=97.85 Aligned_cols=64 Identities=19% Similarity=0.333 Sum_probs=59.8
Q ss_pred CccCCceeeEEEEEecCCCCCcccccccccccccCcceEEEEEEcCHHHHHHHHHhhCCcEECCEEEEEEeeCCCCCC
Q psy16913 1 MFLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQIGMKRLKVQLKRPKDAA 78 (81)
Q Consensus 1 lF~~~G~i~~v~i~~~~~~~~~kg~~~~~~~~~~~~~~~~fV~f~~~~~A~~Ai~~lng~~i~g~~i~V~~a~~~~~~ 78 (81)
+|++||+|.+|.|+.++.++.++| ||||+|.+.++|++|++.|||..+.|+.|.|+++.++...
T Consensus 42 ~F~~~G~i~~v~i~~~~~~~~~~g--------------~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~ 105 (126)
T 3ex7_B 42 KFAEYGEIKNIHLNLDRRTGYLKG--------------YTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWCFVRGPP 105 (126)
T ss_dssp HHHTTSCEEEEECCBCTTTSSBCS--------------CEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEESEESSSC
T ss_pred HHHhcCCeEEEEEEecCCCCccce--------------EEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEecCCCCC
Confidence 489999999999999998999999 9999999999999999999999999999999999776543
No 54
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.69 E-value=3.6e-17 Score=93.88 Aligned_cols=64 Identities=25% Similarity=0.514 Sum_probs=59.6
Q ss_pred CccCCceeeEEEEEecCCCCCcccccccccccccCcceEEEEEEcCHHHHHHHHHhhCCcEECCEEEEEEeeCCCCCCC
Q psy16913 1 MFLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQIGMKRLKVQLKRPKDAAR 79 (81)
Q Consensus 1 lF~~~G~i~~v~i~~~~~~~~~kg~~~~~~~~~~~~~~~~fV~f~~~~~A~~Ai~~lng~~i~g~~i~V~~a~~~~~~~ 79 (81)
+|++||+|.+|.|+.++.++.++| ||||+|.++++|++|+.. |+..++|+.|.|+++.++....
T Consensus 36 ~F~~~G~v~~v~i~~~~~~g~~~g--------------~afV~f~~~~~a~~a~~~-~~~~~~g~~l~V~~a~~~~~~~ 99 (105)
T 2dh8_A 36 YFSQYGEVVDCVIMKDKTTNQSRG--------------FGFVKFKDPNCVGTVLAS-RPHTLDGRNIDPKPCTPRGMQP 99 (105)
T ss_dssp HHHTTSCEEEEEEEECSSSCCEEE--------------EEEEEESSTTHHHHHHHH-CSEEETTEEEBCCCSCCSSCCT
T ss_pred HHHhcCCeEEEEEeeCCCCCCcce--------------EEEEEECCHHHHHHHHHh-CCCeECCEEEEEEEccCCCCCC
Confidence 489999999999999998999999 999999999999999998 9999999999999998876543
No 55
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.69 E-value=8.3e-17 Score=92.55 Aligned_cols=58 Identities=28% Similarity=0.433 Sum_probs=55.6
Q ss_pred CccCCceeeEEEEEecCCCCCcccccccccccccCcceEEEEEEcCHHHHHHHHHhhCCcEECCEEEEEEeeC
Q psy16913 1 MFLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQIGMKRLKVQLKR 73 (81)
Q Consensus 1 lF~~~G~i~~v~i~~~~~~~~~kg~~~~~~~~~~~~~~~~fV~f~~~~~A~~Ai~~lng~~i~g~~i~V~~a~ 73 (81)
+|++||+|.++.|+.++ ++.++| ||||+|.+.++|++|++.|||..+.|+.|.|+++.
T Consensus 49 ~F~~~G~i~~v~i~~~~-~g~~~g--------------~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 106 (107)
T 3ulh_A 49 LFAEFGTLKKAAVHYDR-SGRSLG--------------TADVHFERKADALKAMKQYNGVPLDGRPMNIQLVT 106 (107)
T ss_dssp HHHTTSCEEEEEEEECT-TSCEEE--------------EEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred HHHhcCCeEEEEEEECC-CCCcce--------------EEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEeC
Confidence 48899999999999998 899999 99999999999999999999999999999999986
No 56
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.69 E-value=1.2e-16 Score=94.14 Aligned_cols=62 Identities=21% Similarity=0.362 Sum_probs=58.0
Q ss_pred CccCCceeeEEEEEecCCCCCcccccccccccccCcceEEEEEEcCHHHHHHHHHhhCCcEECCEEEEEEeeCCCCC
Q psy16913 1 MFLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQIGMKRLKVQLKRPKDA 77 (81)
Q Consensus 1 lF~~~G~i~~v~i~~~~~~~~~kg~~~~~~~~~~~~~~~~fV~f~~~~~A~~Ai~~lng~~i~g~~i~V~~a~~~~~ 77 (81)
+|++||+|.++.++.++.++.++| ||||+|.+.++|++|+ .|||..++|+.|.|+++++...
T Consensus 56 ~F~~~G~i~~v~i~~~~~~~~~~g--------------~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~~~~~ 117 (124)
T 2jwn_A 56 HFSSCGSINRITILCDKFSGHPKG--------------YAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPKRTNMP 117 (124)
T ss_dssp HHHTTSCEEEEEEEEECTTSSCEE--------------EEEEEESSHHHHHHHH-TTTTCEETTEECEEEESSCCCS
T ss_pred HHHhcCCEEEEEEEecCCCCCccc--------------EEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECCCCCC
Confidence 489999999999999998999999 9999999999999999 7999999999999999987554
No 57
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.69 E-value=8.3e-17 Score=94.97 Aligned_cols=64 Identities=23% Similarity=0.333 Sum_probs=59.5
Q ss_pred CccCCceeeEEEEEecCCCCCcccccccccccccCcceEEEEEEcCHHHHHHHHHhhCCcEECCEEEEEEeeCCCCCCC
Q psy16913 1 MFLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQIGMKRLKVQLKRPKDAAR 79 (81)
Q Consensus 1 lF~~~G~i~~v~i~~~~~~~~~kg~~~~~~~~~~~~~~~~fV~f~~~~~A~~Ai~~lng~~i~g~~i~V~~a~~~~~~~ 79 (81)
+|++||+|.+++|+.++ +|.++| ||||+|.+.++|++|++.|||..+.|+.|+|++|.+.....
T Consensus 55 ~F~~~G~v~~v~i~~~~-~g~~~g--------------~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~~~ 118 (124)
T 2kt5_A 55 LFAEFGTLKKAAVDYDR-SGRSLG--------------TADVHFERRADALKAMKQYKGVPLDGRPMDIQLVASQIDLE 118 (124)
T ss_dssp HHHTTSCCSEEEEECCS-SSSCCS--------------EEEEEESSHHHHHHHHHHHTTEESSSCEEEEEEECCTTCCC
T ss_pred HHHhcCCeeEEEEEECC-CCCEee--------------EEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEeCCCCCCC
Confidence 48899999999999998 999999 99999999999999999999999999999999998876544
No 58
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=7.9e-17 Score=94.00 Aligned_cols=64 Identities=22% Similarity=0.391 Sum_probs=59.8
Q ss_pred CccCCceeeEEEEEecCCCCCcccccccccccccCcceEEEEEEcCHHHHHHHHHhhCCcEECCEEEEEEeeCCCCCCC
Q psy16913 1 MFLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQIGMKRLKVQLKRPKDAAR 79 (81)
Q Consensus 1 lF~~~G~i~~v~i~~~~~~~~~kg~~~~~~~~~~~~~~~~fV~f~~~~~A~~Ai~~lng~~i~g~~i~V~~a~~~~~~~ 79 (81)
+|++||+|.++.|+.++.++.++| ||||+|.+.++|++|++. |+..++|+.|.|+++.++....
T Consensus 47 ~F~~~G~i~~v~i~~~~~~g~~~g--------------~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~a~~~~~~~ 110 (116)
T 1x4b_A 47 YYEQWGKLTDCVVMRDPASKRSRG--------------FGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKRAVAREESG 110 (116)
T ss_dssp HHTSSCCCSEEEEECCTTTSSCCS--------------EEEEECSSHHHHHHHHTS-CSEEETTEEEEEECCSSCCCCC
T ss_pred HHHhcCCEEEEEEEECCCCCCcCc--------------eEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEECCCCccCC
Confidence 589999999999999998999999 999999999999999997 9999999999999998887643
No 59
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.68 E-value=2.4e-17 Score=93.66 Aligned_cols=63 Identities=22% Similarity=0.374 Sum_probs=59.2
Q ss_pred CccCCceee-EEEEEecCCCCCcccccccccccccCcceEEEEEEcCHHHHHHHHHhhCCcEECCEE----EEEEeeCCC
Q psy16913 1 MFLPFGNVI-SSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQIGMKR----LKVQLKRPK 75 (81)
Q Consensus 1 lF~~~G~i~-~v~i~~~~~~~~~kg~~~~~~~~~~~~~~~~fV~f~~~~~A~~Ai~~lng~~i~g~~----i~V~~a~~~ 75 (81)
+|++||+|. +++|+.++.++.++| ||||+|.+.++|++|++.|||..+.|+. |+|++|.+.
T Consensus 29 ~F~~~G~i~~~v~i~~~~~~g~~~g--------------~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~l~v~~a~~~ 94 (99)
T 2div_A 29 AFATMGETVMSVKIIRNRLTGIPAG--------------YCFVEFADLATAEKCLHKINGKPLPGATPAKRFKLNYATYS 94 (99)
T ss_dssp HHHHTTCCCCEEEEEECSSSCCEEE--------------EEEEECSCHHHHHHHHHTTTTSEESSCSSCEECCEEETTCC
T ss_pred HHHHhCCcceEEEEeecCCCCCcCC--------------EEEEEeCCHHHHHHHHHHHcCCccCCCCcceeEEEeecCCC
Confidence 488999999 999999999999999 9999999999999999999999999999 999999886
Q ss_pred CC
Q psy16913 76 DA 77 (81)
Q Consensus 76 ~~ 77 (81)
..
T Consensus 95 ~~ 96 (99)
T 2div_A 95 GP 96 (99)
T ss_dssp SS
T ss_pred CC
Confidence 54
No 60
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.68 E-value=3.1e-17 Score=93.40 Aligned_cols=59 Identities=31% Similarity=0.447 Sum_probs=56.3
Q ss_pred CccCCceeeE--------EEEEecCCCCCcccccccccccccCcceEEEEEEcCHHHHHHHHHhhCCcEECCEEEEEEee
Q psy16913 1 MFLPFGNVIS--------SKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQIGMKRLKVQLK 72 (81)
Q Consensus 1 lF~~~G~i~~--------v~i~~~~~~~~~kg~~~~~~~~~~~~~~~~fV~f~~~~~A~~Ai~~lng~~i~g~~i~V~~a 72 (81)
+|++||.|.+ ++++.++.+|.++| ||||+|.+.++|++|++.|||..+.|+.|+|++|
T Consensus 33 ~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G--------------~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~A 98 (99)
T 2la6_A 33 YFKQIGIIKTNKKTGQPMINLYTDRETGKLKG--------------EATVSFDDPPSAKAAIDWFDGKEFSGNPIKVSFA 98 (99)
T ss_dssp HHTTTSCBCEETTTTEESEEEEECTTTCSEEE--------------EEEEEBSSHHHHHHHHHHHTTCBSSSSBCEEEEC
T ss_pred HHHHhCCEeeccccccccEEEEecCCCCCeee--------------EEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEec
Confidence 4899999999 99999998999999 9999999999999999999999999999999998
Q ss_pred C
Q psy16913 73 R 73 (81)
Q Consensus 73 ~ 73 (81)
+
T Consensus 99 ~ 99 (99)
T 2la6_A 99 T 99 (99)
T ss_dssp C
T ss_pred C
Confidence 4
No 61
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.68 E-value=1.2e-16 Score=92.85 Aligned_cols=63 Identities=27% Similarity=0.443 Sum_probs=58.5
Q ss_pred CccCCceeeEEEEEecCCCCCcccccccccccccCcceEEEEEEcCHHHHHHHHHhhCCcEECCEEEEEEeeCCCCCC
Q psy16913 1 MFLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQIGMKRLKVQLKRPKDAA 78 (81)
Q Consensus 1 lF~~~G~i~~v~i~~~~~~~~~kg~~~~~~~~~~~~~~~~fV~f~~~~~A~~Ai~~lng~~i~g~~i~V~~a~~~~~~ 78 (81)
+|++||+|.++.|+.++.+|.++| ||||+|.+.++|++|+..+ +..++|+.|.|+++.++..+
T Consensus 45 ~F~~~G~i~~v~i~~~~~tg~~kg--------------~afV~f~~~~~A~~Ai~~~-~~~l~g~~l~V~~a~~~~~~ 107 (109)
T 2rs2_A 45 YFGQFGEVKECLVMRDPLTKRSRG--------------FGFVTFMDQAGVDKVLAQS-RHELDSKTIDPKVAFPRRAQ 107 (109)
T ss_dssp HHTTTSCEEEEEECCCTTTCCCTT--------------CEEEEESSHHHHHHHHHSS-CEEETTEEEEEEECCCCCCC
T ss_pred HHHccCCeEEEEEEECCCCCCcCc--------------EEEEEECCHHHHHHHHHHC-CCcCCCEEEEEEEccCCCCC
Confidence 489999999999999998999999 9999999999999999976 59999999999999987764
No 62
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=2.3e-16 Score=90.20 Aligned_cols=62 Identities=27% Similarity=0.533 Sum_probs=56.4
Q ss_pred CccCCceeeEEEEEecCCCCCcccccccccccccCcceEEEEEEcCHHHHHHHHHhhCCcEECCEEEEEEeeCCCCCC
Q psy16913 1 MFLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQIGMKRLKVQLKRPKDAA 78 (81)
Q Consensus 1 lF~~~G~i~~v~i~~~~~~~~~kg~~~~~~~~~~~~~~~~fV~f~~~~~A~~Ai~~lng~~i~g~~i~V~~a~~~~~~ 78 (81)
+|++||+|.++.|+.++. .++| ||||+|.+.++|++|+..|||..+.|+.|.|+++.++...
T Consensus 35 ~f~~~G~v~~v~i~~~~~--~~~g--------------~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~ 96 (103)
T 2cq3_A 35 MFGQFGKILDVEIIFNER--GSKG--------------FGFVTFENSADADRAREKLHGTVVEGRKIEVNNATARVMT 96 (103)
T ss_dssp HGGGTSCEEEEEEECCTT--TTCC--------------EEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCSSCCC
T ss_pred HHHhcCCeEEEEEEecCC--CCcE--------------EEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEcccCCCC
Confidence 589999999999999863 3788 9999999999999999999999999999999999887654
No 63
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=2e-17 Score=94.66 Aligned_cols=63 Identities=25% Similarity=0.503 Sum_probs=59.4
Q ss_pred CccCCceeeEEEEEecCCCCCcccccccccccccCcceEEEEEEcCHHHHHHHHHhhCCcEECCEEEEEEeeCCCCC
Q psy16913 1 MFLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQIGMKRLKVQLKRPKDA 77 (81)
Q Consensus 1 lF~~~G~i~~v~i~~~~~~~~~kg~~~~~~~~~~~~~~~~fV~f~~~~~A~~Ai~~lng~~i~g~~i~V~~a~~~~~ 77 (81)
+|++||+|.++.++.++.+|.++| ||||+|.+.++|++|++.|||..+.|+.|.|+++.++..
T Consensus 28 ~f~~~G~i~~~~i~~~~~~g~~~g--------------~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 90 (104)
T 1p1t_A 28 IFSEVGPVVSFRLVYDRETGKPKG--------------YGFCEYQDQETALSAMRNLNGREFSGRALRVDNAASEKN 90 (104)
T ss_dssp HHHTTSCCSEEEEEEETTTTEEEE--------------EEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEETTCTTH
T ss_pred HHHhcCCeeEEEEEeCCCCCccce--------------EEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeCCCccc
Confidence 488999999999999998999999 999999999999999999999999999999999988754
No 64
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.68 E-value=9.5e-17 Score=90.48 Aligned_cols=59 Identities=31% Similarity=0.528 Sum_probs=55.3
Q ss_pred CccCCceeeEEEEEecCCCCCcccccccccccccCcceEEEEEEcCHHHHHHHHHhhCCcEECCEEEEEEeeCC
Q psy16913 1 MFLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQIGMKRLKVQLKRP 74 (81)
Q Consensus 1 lF~~~G~i~~v~i~~~~~~~~~kg~~~~~~~~~~~~~~~~fV~f~~~~~A~~Ai~~lng~~i~g~~i~V~~a~~ 74 (81)
+|++||+|.++.|+.++. +.++| ||||+|.++++|++|++.|||..+.|+.|.|++++.
T Consensus 36 ~F~~~G~i~~v~i~~~~~-g~~~g--------------~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~ 94 (95)
T 2ywk_A 36 LFLQAGPLTKVTICKDRE-GKPKS--------------FGFVCFKHPESVSYAIALLNGIRLYGRPINVSGPSS 94 (95)
T ss_dssp HHGGGSCEEEEEEEECTT-SCEEE--------------EEEEEESSTHHHHHHHHHHTTCEETTEECEEECCCC
T ss_pred HHHhcCCEEEEEEEECCC-CCCce--------------EEEEEECCHHHHHHHHHHhCCCEECCCEEEEEEcCC
Confidence 489999999999999984 88888 999999999999999999999999999999999864
No 65
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.68 E-value=7.8e-17 Score=99.38 Aligned_cols=63 Identities=25% Similarity=0.366 Sum_probs=58.9
Q ss_pred CccCCceeeEEEEEecCCCCCcccccccccccccCcceEEEEEEcCHHHHHHHHHhhCCcEECCEEEEEEeeCCCCC
Q psy16913 1 MFLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQIGMKRLKVQLKRPKDA 77 (81)
Q Consensus 1 lF~~~G~i~~v~i~~~~~~~~~kg~~~~~~~~~~~~~~~~fV~f~~~~~A~~Ai~~lng~~i~g~~i~V~~a~~~~~ 77 (81)
+|++||+|..|.|+.++.+|.++| ||||+|.+.++|+.||..|||..|.|+.|.|.|+.++..
T Consensus 92 ~F~~~G~i~~v~i~~~~~~g~~~g--------------~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~ 154 (165)
T 1rk8_A 92 KFCDYGEIKNIHLNLDRRTGFSKG--------------YALVEYETHKQALAAKEALNGAEIMGQTIQVDWCFVKGP 154 (165)
T ss_dssp HHGGGSCEEEEEEEECTTTSSEEE--------------EEEEEESSHHHHHHHHHHHTTCEETTEECEEEESEECC-
T ss_pred HhhcCCCEEEEEEEecCCCCcEee--------------EEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEecCCCC
Confidence 589999999999999998999999 999999999999999999999999999999999977654
No 66
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.68 E-value=1.1e-17 Score=93.66 Aligned_cols=63 Identities=29% Similarity=0.524 Sum_probs=55.1
Q ss_pred CccCCceeeEEEEEecCCCCCcccccccccccccCcceEEEEEEcCHHHHHHHHHhhCCcEECCEEEEEEeeCCCCCC
Q psy16913 1 MFLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQIGMKRLKVQLKRPKDAA 78 (81)
Q Consensus 1 lF~~~G~i~~v~i~~~~~~~~~kg~~~~~~~~~~~~~~~~fV~f~~~~~A~~Ai~~lng~~i~g~~i~V~~a~~~~~~ 78 (81)
+|++||+|.++.++.++.++.++| ||||+|.+.+ |++|+..|||..++|+.|.|++|.++...
T Consensus 21 ~F~~~G~i~~v~i~~~~~~~~~~g--------------~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~~~~ 83 (90)
T 2ki2_A 21 LFSQFGKVFNVKLIYDRETKKPKG--------------FGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPKKSL 83 (90)
T ss_dssp THHHHTCCSEEEECCCSSSCCCCE--------------EEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC------
T ss_pred HHHhcCCEEEEEEEEcCCCCCcce--------------EEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCCCCC
Confidence 589999999999999998999999 9999999999 99999999999999999999999876543
No 67
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.68 E-value=4.1e-17 Score=92.57 Aligned_cols=62 Identities=18% Similarity=0.261 Sum_probs=57.9
Q ss_pred CccCCceeeEEEEEecCCCCCcccccccccccccCcceEEEEEEcCHHHHHHHHHhhCCcEECCEEEEEEeeCCCC
Q psy16913 1 MFLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQIGMKRLKVQLKRPKD 76 (81)
Q Consensus 1 lF~~~G~i~~v~i~~~~~~~~~kg~~~~~~~~~~~~~~~~fV~f~~~~~A~~Ai~~lng~~i~g~~i~V~~a~~~~ 76 (81)
+|++||+|.++.++.++.++.++| ||||+|.++++|++|++.|||..+.|+.|+|+++..+.
T Consensus 35 ~F~~~G~v~~~~~~~~~~~g~~~g--------------~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~~ 96 (98)
T 2cqp_A 35 FFYGYQVIPGSVCLKYNEKGMPTG--------------EAMVAFESRDEATAAVIDLNDRPIGSRKVKLVLGSGPS 96 (98)
T ss_dssp HTTTSCCCTTTCEEEECSSSCEEE--------------EEEEEESCHHHHHHHHHHTTTCEETTEECEEEESSCSS
T ss_pred HHHHcCCccceEEEEECCCCCeee--------------EEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEcCCCC
Confidence 589999999999999998999999 99999999999999999999999999999999997654
No 68
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=5e-17 Score=94.62 Aligned_cols=61 Identities=25% Similarity=0.355 Sum_probs=57.4
Q ss_pred CccCCceeeEEEEEecCCCCCcccccccccccccCcceEEEEEEcCHHHHHHHHHhhCCcEECCEEEEEEeeCCCC
Q psy16913 1 MFLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQIGMKRLKVQLKRPKD 76 (81)
Q Consensus 1 lF~~~G~i~~v~i~~~~~~~~~kg~~~~~~~~~~~~~~~~fV~f~~~~~A~~Ai~~lng~~i~g~~i~V~~a~~~~ 76 (81)
+|++||.|.+|.|+.++.++.++| ||||+|.+.++|++|+ .|||..+.|+.|.|+++.++.
T Consensus 45 ~F~~~G~i~~v~i~~~~~~g~~~g--------------~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~~~~ 105 (114)
T 2cq4_A 45 FFSAVGKVRDVRIISDRNSRRSKG--------------IAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQASQAEK 105 (114)
T ss_dssp HHTTTSCEEEEEECCSCCSSSCCC--------------CEEEEESCGGGHHHHH-HHTTEEETTEEEEEEEHHHHH
T ss_pred HHHhCCCEeEEEEEecCCCCccCc--------------EEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEecCCCc
Confidence 589999999999999998999999 9999999999999999 899999999999999997654
No 69
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.66 E-value=3.7e-17 Score=93.63 Aligned_cols=63 Identities=27% Similarity=0.518 Sum_probs=58.6
Q ss_pred CccC-CceeeEEEEEecCCCCCcccccccccccccCcceEEEEEEcCHHHHHHHHHhhCCcE-ECCEEEEEEeeCCCCCC
Q psy16913 1 MFLP-FGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQ-IGMKRLKVQLKRPKDAA 78 (81)
Q Consensus 1 lF~~-~G~i~~v~i~~~~~~~~~kg~~~~~~~~~~~~~~~~fV~f~~~~~A~~Ai~~lng~~-i~g~~i~V~~a~~~~~~ 78 (81)
+|++ ||+|.++.|+.++ ++.++| ||||+|.+.++|++|++.|||.. +.|+.|.|+++.++..+
T Consensus 29 ~F~~~~G~v~~v~i~~~~-~g~~~g--------------~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v~~a~~~~~~ 93 (104)
T 2dhg_A 29 FFVKVYPSCRGGKVVLDQ-TGVSKG--------------YGFVKFTDELEQKRALTECQGAVGLGSKPVRLSVAIPKASR 93 (104)
T ss_dssp HHHHHCTTEEEEEEEECT-TCCEEE--------------EEEEEESCHHHHHHHHHHTTTCCSSSSSCCCCCBCCCCCSC
T ss_pred HHHHhCCCeEEEEEEECC-CCCccc--------------eEEEEECCHHHHHHHHHHccCCcccCCEeEEEEEccCCCcC
Confidence 4788 9999999999998 999999 99999999999999999999999 99999999999877654
No 70
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.66 E-value=6e-17 Score=92.62 Aligned_cols=60 Identities=18% Similarity=0.407 Sum_probs=56.4
Q ss_pred CccCCceeeEEEEEecC-CCCCcccccccccccccCcceEEEEEEcCHHHHHHHHHhhCCcEECCEEEEEEeeCCCC
Q psy16913 1 MFLPFGNVISSKVFIDR-ATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQIGMKRLKVQLKRPKD 76 (81)
Q Consensus 1 lF~~~G~i~~v~i~~~~-~~~~~kg~~~~~~~~~~~~~~~~fV~f~~~~~A~~Ai~~lng~~i~g~~i~V~~a~~~~ 76 (81)
+|++|| |.++.|+.++ .+|+++| ||||+|.+.++|++|+ .|||..+.|+.|.|+++.++.
T Consensus 39 ~F~~~G-i~~v~i~~~~~~~g~~~g--------------~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~V~~a~~~~ 99 (100)
T 2j76_E 39 FFRGLN-ISAVRLPREPSNPERLKG--------------FGYAEFEDLDSLLSAL-SLNEESLGNRRIRVDVADQAQ 99 (100)
T ss_dssp HSCSSC-EEEEECSCCTTTTCCCCS--------------CEEEEECCHHHHHHHH-HTTTCCBTTBCCCCEECCCSC
T ss_pred HHHhcC-CeEEEEEecCCcCCccCe--------------EEEEEECCHHHHHHHH-hcCCCEECCeEEEEEeccCCC
Confidence 489999 9999999998 6899999 9999999999999999 899999999999999998875
No 71
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.66 E-value=8e-17 Score=90.79 Aligned_cols=60 Identities=17% Similarity=0.247 Sum_probs=56.1
Q ss_pred CccCCceeeEEEEEecCCCCCcccccccccccccCcceEEEEEEcCHHHHHHHHHhhCCcEECCEEEEEEeeCC
Q psy16913 1 MFLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQIGMKRLKVQLKRP 74 (81)
Q Consensus 1 lF~~~G~i~~v~i~~~~~~~~~kg~~~~~~~~~~~~~~~~fV~f~~~~~A~~Ai~~lng~~i~g~~i~V~~a~~ 74 (81)
+|++||+|.++.++.++.++.++| ||||+|.++++|++|++.|||..+.|+.|+|+++.+
T Consensus 35 ~F~~~G~i~~~~~~~~~~~g~~~g--------------~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a~s 94 (95)
T 2ek1_A 35 FFYGYQVIPGSVCLKYNEKGMPTG--------------EAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGPSS 94 (95)
T ss_dssp HTTTSCBCTTCCEEEECTTSCEEE--------------EEEEEESSHHHHHHHHHHHTTCEETTEECEEECCC-
T ss_pred HHHhcCCccceEEEEeCCCCCEee--------------EEEEEECCHHHHHHHHHHhCCCeECCcEEEEEeccC
Confidence 489999999999999998999999 999999999999999999999999999999998864
No 72
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.66 E-value=1.6e-16 Score=92.04 Aligned_cols=55 Identities=16% Similarity=0.178 Sum_probs=51.8
Q ss_pred cCCceeeEEEEEecCCCCCcccccccccccccCcceEEEEEEcCHHHHHHHHHhhCCcEECCEEEEEEee
Q psy16913 3 LPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQIGMKRLKVQLK 72 (81)
Q Consensus 3 ~~~G~i~~v~i~~~~~~~~~kg~~~~~~~~~~~~~~~~fV~f~~~~~A~~Ai~~lng~~i~g~~i~V~~a 72 (81)
++||+|.++.|++++ +++++| ||||+|.++++|++|+..|||..++||.|.|+++
T Consensus 49 ~~~G~V~~v~i~~~~-~~~~~G--------------~~fV~f~~~~~A~~A~~~lng~~~~Gr~i~v~~s 103 (104)
T 1jmt_A 49 EKYGEVEEMNVCDNL-GDHLVG--------------NVYVKFRREEDAEKAVIDLNNRWFNGQPIHAELS 103 (104)
T ss_dssp HHTCCEEEEEECCSS-SSSSEE--------------EEEEEESCHHHHHHHHHHHTTCEETTEECCEEEC
T ss_pred ccCCceEEEEEEeCC-CCCccE--------------EEEEEECCHHHHHHHHHHHCCCEECCEEEEEEEc
Confidence 899999999999886 477888 9999999999999999999999999999999986
No 73
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=3e-17 Score=90.97 Aligned_cols=59 Identities=31% Similarity=0.612 Sum_probs=55.6
Q ss_pred CccCCceeeEEEEEecCCCCCcccccccccccccCcceEEEEEEcCHHHHHHHHHhhCCcEECCEEEEEEeeC
Q psy16913 1 MFLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQIGMKRLKVQLKR 73 (81)
Q Consensus 1 lF~~~G~i~~v~i~~~~~~~~~kg~~~~~~~~~~~~~~~~fV~f~~~~~A~~Ai~~lng~~i~g~~i~V~~a~ 73 (81)
+|++||+|.++.|+.++.++.++| ||||+|.++++|++|++.|||..++|+.|+++++.
T Consensus 25 ~f~~~G~i~~~~i~~~~~~~~~~g--------------~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~~~ 83 (85)
T 1x4e_A 25 LCQPYGKIVSTKAILDKTTNKCKG--------------YGFVDFDSPSAAQKAVTALKASGVQAQMAKQSGPS 83 (85)
T ss_dssp TSTTTSCEEEEEEECCSSSCSCCS--------------EEEEEESCHHHHHHHHHHHHHHTCCEESCCSSCCC
T ss_pred HHHhcCCeEEEEEEecCCCCCcCc--------------EEEEEECCHHHHHHHHHHhcCCeEeeEEEeecCCC
Confidence 699999999999999998999999 99999999999999999999999999999887764
No 74
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.66 E-value=9.1e-17 Score=92.67 Aligned_cols=61 Identities=21% Similarity=0.445 Sum_probs=55.5
Q ss_pred CccCCceeeEEEEEecCCCCCcccccccccccccCcceEEEEEEcCHHHHHHHHHhhCCcEECCE-EEEEEeeCCCCC
Q psy16913 1 MFLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQIGMK-RLKVQLKRPKDA 77 (81)
Q Consensus 1 lF~~~G~i~~v~i~~~~~~~~~kg~~~~~~~~~~~~~~~~fV~f~~~~~A~~Ai~~lng~~i~g~-~i~V~~a~~~~~ 77 (81)
+|++||+|.++.|+ +.+|.++| ||||+|.+.++|++|+..|||..+.|+ .|.|+++...+.
T Consensus 41 ~F~~~G~v~~v~i~--~~~g~~~G--------------~afV~f~~~~~A~~Ai~~l~g~~~~g~~~l~V~~a~~~~k 102 (105)
T 2nlw_A 41 IFSKFGKITNDFYP--EEDGKTKG--------------YIFLEYASPAHAVDAVKNADGYKLDKQHTFRVNLFTDFDK 102 (105)
T ss_dssp HHGGGSCEEEEECC--CBTTBSCC--------------EEEEEECSSSHHHHHHHHCSSEECSTTCEEEEECSCCCCC
T ss_pred HHhcCCCEEEEEee--CCCCCeee--------------EEEEEECCHHHHHHHHHHhCCcccCCCceEEEEEcchHhh
Confidence 48999999999988 45889999 999999999999999999999999998 999999976543
No 75
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.65 E-value=1.6e-16 Score=90.19 Aligned_cols=53 Identities=11% Similarity=0.252 Sum_probs=49.5
Q ss_pred CccCCceeeEEEEEecCCCCCcccccccccccccCcceEEEEEEcCHHHHHHHHHhhCCcEECCEEEEEEeeC
Q psy16913 1 MFLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQIGMKRLKVQLKR 73 (81)
Q Consensus 1 lF~~~G~i~~v~i~~~~~~~~~kg~~~~~~~~~~~~~~~~fV~f~~~~~A~~Ai~~lng~~i~g~~i~V~~a~ 73 (81)
||++||+|.+++++. ++| ||||+|.++++|++|++.||+..+.|++|+|++|.
T Consensus 27 lF~q~G~V~~~~l~~------~kG--------------faFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A~ 79 (89)
T 2wbr_A 27 LCMQHGPLVSFHPYL------NQG--------------IALCKYTTREEANKAQMALNNCVLANTTIFAESPS 79 (89)
T ss_dssp HHHHHSCEEEEEEET------TTT--------------EEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCC
T ss_pred HHHhhCCEEEEEEcC------CCc--------------EEEEEECCHHHHHHHHHHhcCCEECCcEEEEEECC
Confidence 589999999999865 578 99999999999999999999999999999999984
No 76
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.65 E-value=1.5e-16 Score=89.22 Aligned_cols=63 Identities=25% Similarity=0.497 Sum_probs=57.5
Q ss_pred CccCCceeeEEEEEecCCCCCcccccccccccccCcceEEEEEEcCHHHHHHHHHhhCCcEECCEEEEEEeeCCCCCCC
Q psy16913 1 MFLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQIGMKRLKVQLKRPKDAAR 79 (81)
Q Consensus 1 lF~~~G~i~~v~i~~~~~~~~~kg~~~~~~~~~~~~~~~~fV~f~~~~~A~~Ai~~lng~~i~g~~i~V~~a~~~~~~~ 79 (81)
+|++||+|.++.++.+ ++.++| ||||+|.+.++|++|++.|||..+.|+.|.|+++.++....
T Consensus 28 ~f~~~G~v~~~~i~~~--~g~~~g--------------~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~~~~~ 90 (92)
T 2dgv_A 28 KFNECGHVLYADIKME--NGKSKG--------------CGVVKFESPEVAERACRMMNGMKLSGREIDVRIDRNASGPS 90 (92)
T ss_dssp HHHTTSCEEEEEEEES--SSCEEE--------------EEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEECSCCSSCC
T ss_pred HHHhcCCEEEEEEEcc--CCCcce--------------EEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCCCCCCC
Confidence 4889999999999984 788888 99999999999999999999999999999999998876543
No 77
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.65 E-value=3.5e-16 Score=90.84 Aligned_cols=60 Identities=17% Similarity=0.132 Sum_probs=54.1
Q ss_pred CccCCceeeEEEEEecCCCC--CcccccccccccccCcceEEEEEEcCHHHHHHHHHhhCCcEECCEEEEEEeeCC
Q psy16913 1 MFLPFGNVISSKVFIDRATN--QSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQIGMKRLKVQLKRP 74 (81)
Q Consensus 1 lF~~~G~i~~v~i~~~~~~~--~~kg~~~~~~~~~~~~~~~~fV~f~~~~~A~~Ai~~lng~~i~g~~i~V~~a~~ 74 (81)
.|++||+|.++.|++++.++ +++| |+||+|.++++|.+|++.|||..++||.|.|.++.+
T Consensus 35 ~f~k~G~V~~v~i~~~~~~~~~~~~G--------------~~fV~f~~~~~A~~Ai~~lnG~~f~GR~i~v~~~~~ 96 (105)
T 3v4m_A 35 ECSKYGLVKSIEIPRPVDGVEVPGCG--------------KIFVEFTSVFDCQKAMQGLTGRKFANRVVVTKYCDP 96 (105)
T ss_dssp HHHTTSCEEEEECCCCBTTBCCTTTT--------------EEEEEESSHHHHHHHHHHHTTCEETTEECEEEEECH
T ss_pred HHHccCCEEEEEEeccCCCCCcCCcE--------------EEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEEeCH
Confidence 37899999999999987553 5677 999999999999999999999999999999999854
No 78
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.65 E-value=1.9e-16 Score=94.49 Aligned_cols=58 Identities=29% Similarity=0.555 Sum_probs=54.9
Q ss_pred CccCCceeeEEEEEecCCCCCcccccccccccccCcceEEEEEEcCHHHHHHHHHhhCCcEECCEEEEEEee
Q psy16913 1 MFLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQIGMKRLKVQLK 72 (81)
Q Consensus 1 lF~~~G~i~~v~i~~~~~~~~~kg~~~~~~~~~~~~~~~~fV~f~~~~~A~~Ai~~lng~~i~g~~i~V~~a 72 (81)
+|++||+|.+++++.++.++.++| ||||+|.+.++|++|++.|||..+.|+.|+|++|
T Consensus 83 ~f~~~G~i~~v~i~~~~~~~~~~g--------------~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~A 140 (140)
T 2ku7_A 83 AFIPFGDITDIQIPLDYETEKHRG--------------FAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 140 (140)
T ss_dssp HHGGGSCEEEEECCCCTTTCCCCS--------------EEEEEESCHHHHHHHHHHSTEEEETTEEEEEEC-
T ss_pred HHHhcCCEEEEEEeecCCCCCcCc--------------EEEEEECCHHHHHHHHHHhCCCEECCEEEEEEeC
Confidence 489999999999999998999999 9999999999999999999999999999999986
No 79
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.65 E-value=4.4e-17 Score=98.02 Aligned_cols=64 Identities=31% Similarity=0.474 Sum_probs=60.1
Q ss_pred CccCCceeeEEEEEecCCCCCcccccccccccccCcceEEEEEEcCHHHHHHHHHhhCCcEECCEEEEEEeeCCCCCC
Q psy16913 1 MFLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQIGMKRLKVQLKRPKDAA 78 (81)
Q Consensus 1 lF~~~G~i~~v~i~~~~~~~~~kg~~~~~~~~~~~~~~~~fV~f~~~~~A~~Ai~~lng~~i~g~~i~V~~a~~~~~~ 78 (81)
+|++||+|.++.|+.++.++.++| ||||+|.+.++|++|++.|||..+.|+.|.|++++++..+
T Consensus 67 ~F~~~G~i~~v~i~~~~~~g~~~G--------------~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a~~~~~~ 130 (135)
T 2lea_A 67 VFEKYGRVGDVYIPRDRYTKESRG--------------FAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRPP 130 (135)
T ss_dssp HHGGGSCCSEEECCCCSSSSSCCS--------------CCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEECCCCCCC
T ss_pred HHHhcCCEEEEEEEecCCCCccce--------------EEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCCCCC
Confidence 489999999999999998999999 9999999999999999999999999999999999887654
No 80
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=3.7e-16 Score=90.81 Aligned_cols=61 Identities=28% Similarity=0.523 Sum_probs=56.9
Q ss_pred CccCCceeeEEEEEecCCCCCcccccccccccccCcceEEEEEEcCHHHHHHHHHhhCCcEE--------CCEEEEEEee
Q psy16913 1 MFLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQI--------GMKRLKVQLK 72 (81)
Q Consensus 1 lF~~~G~i~~v~i~~~~~~~~~kg~~~~~~~~~~~~~~~~fV~f~~~~~A~~Ai~~lng~~i--------~g~~i~V~~a 72 (81)
+|++||+|.+++|+.++ ++.++| ||||+|.+.++|++|++.|||..+ .+++|.|.+|
T Consensus 45 ~F~~~G~i~~~~i~~~~-~g~~~g--------------~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~~~~l~v~~a 109 (114)
T 1x5o_A 45 MLKPFGQVISTRILRDS-SGTSRG--------------VGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPTEPLLCKFS 109 (114)
T ss_dssp TTTTTSCEEEEEEEECS-SSCEEE--------------EEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCCSSCBEEEEC
T ss_pred HHHhcCCEEEEEEEECC-CCCcce--------------EEEEEECCHHHHHHHHHHhCCCEEcCCccccCCCCceeEEcc
Confidence 69999999999999998 899999 999999999999999999999999 5788999999
Q ss_pred CCCC
Q psy16913 73 RPKD 76 (81)
Q Consensus 73 ~~~~ 76 (81)
.|+.
T Consensus 110 ~p~~ 113 (114)
T 1x5o_A 110 GPSS 113 (114)
T ss_dssp CCSC
T ss_pred CCCC
Confidence 8753
No 81
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.65 E-value=4.8e-16 Score=86.39 Aligned_cols=57 Identities=23% Similarity=0.476 Sum_probs=53.4
Q ss_pred CccCCceeeEEEEEecCCCCCcccccccccccccCcceEEEEEEcCHHHHHHHHHhhCCcEECCEEEEEEee
Q psy16913 1 MFLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQIGMKRLKVQLK 72 (81)
Q Consensus 1 lF~~~G~i~~v~i~~~~~~~~~kg~~~~~~~~~~~~~~~~fV~f~~~~~A~~Ai~~lng~~i~g~~i~V~~a 72 (81)
+|++||+|.++.++.++.++.++| ||||+|.+.++|++|++ +++..++|+.|.|++|
T Consensus 31 ~F~~~G~i~~v~i~~~~~~g~~~g--------------~afV~f~~~~~a~~A~~-~~~~~~~g~~i~v~~A 87 (87)
T 3s7r_A 31 YFTKFGEVVDCTIKMDPNTGRSRG--------------FGFILFKDAASVEKVLD-QKEHRLDGRVIDPKKA 87 (87)
T ss_dssp HHTTTSCEEEEEEEECTTTCCEEE--------------EEEEEESSTHHHHHHHH-SSCEEETTEEEEEEEC
T ss_pred HHHhCCCEEEEEEeecCCCCcccc--------------EEEEEECCHHHHHHHHH-hCCCEECCEEEEEEeC
Confidence 489999999999999998999999 99999999999999996 5889999999999986
No 82
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=7.1e-16 Score=88.16 Aligned_cols=62 Identities=27% Similarity=0.393 Sum_probs=57.2
Q ss_pred CccCCceeeEEEEEecCCCCCcccccccccccccCcceEEEEEEcCHHHHHHHHHhhCCcEECCEEEEEEeeCCCCCC
Q psy16913 1 MFLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQIGMKRLKVQLKRPKDAA 78 (81)
Q Consensus 1 lF~~~G~i~~v~i~~~~~~~~~kg~~~~~~~~~~~~~~~~fV~f~~~~~A~~Ai~~lng~~i~g~~i~V~~a~~~~~~ 78 (81)
+|++||+|.++.|+.++.++.++| ||||+|.+.++|++|+. ++..++|+.|.|+++.++...
T Consensus 35 ~F~~~G~i~~v~i~~~~~~g~~~g--------------~afV~f~~~~~a~~A~~--~~~~~~g~~l~v~~a~~~~~~ 96 (103)
T 2cqg_A 35 YFSTFGEVLMVQVKKDLKTGHSKG--------------FGFVRFTEYETQVKVMS--QRHMIDGRWCDCKLPNSKQSQ 96 (103)
T ss_dssp HHGGGSCEEEEEEEECSSSCSEEE--------------EEEEEESSHHHHHHHHH--SCEEETTEEEEEECCCTTCCC
T ss_pred HHHhcCCeEEEEEEecCCCCCccc--------------eEEEEECCHHHHHHHHH--cCCeeCCeEEEEEecCCCCcC
Confidence 489999999999999998999999 99999999999999999 578999999999999887653
No 83
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=1.1e-16 Score=92.33 Aligned_cols=63 Identities=16% Similarity=0.250 Sum_probs=57.7
Q ss_pred CccCCce-eeEEEEE-ecCCCCCcccccccccccccCcceEEEEEEcCHHHHHHHHHhhC--CcEECCEEEEEEeeCCCC
Q psy16913 1 MFLPFGN-VISSKVF-IDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMN--GFQIGMKRLKVQLKRPKD 76 (81)
Q Consensus 1 lF~~~G~-i~~v~i~-~~~~~~~~kg~~~~~~~~~~~~~~~~fV~f~~~~~A~~Ai~~ln--g~~i~g~~i~V~~a~~~~ 76 (81)
+|++||+ |.++.++ .++.++.++| ||||+|.+.++|+.|+..|| +..+.|+.|.|++|.++.
T Consensus 28 ~f~~~G~~v~~v~i~~~~~~~g~~~g--------------~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~V~~a~~~~ 93 (109)
T 2dis_A 28 EIAKVTEGVLDVIVYASAADKMKNRG--------------FAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEI 93 (109)
T ss_dssp HHHHHSTTEEEEECCSSSCTTTTTCC--------------EEEEEESSHHHHHHHHTTTTTCCSCBTTBCCEEEESCSSC
T ss_pred HHHHhcCCceEEEEEccCCCCCCcCc--------------EEEEEecCHHHHHHHHHHhhCCCceecCCeEEEEEcCCCC
Confidence 4789998 9999998 8888889999 99999999999999999996 589999999999998876
Q ss_pred C
Q psy16913 77 A 77 (81)
Q Consensus 77 ~ 77 (81)
.
T Consensus 94 ~ 94 (109)
T 2dis_A 94 D 94 (109)
T ss_dssp S
T ss_pred C
Confidence 5
No 84
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.64 E-value=9.6e-17 Score=96.13 Aligned_cols=60 Identities=13% Similarity=0.310 Sum_probs=54.0
Q ss_pred CccCCceeeEEEEEecCCCCCcccccccccccccCcceEEEEEEcCHHHHHHHHHhhCCcEECCEEEEEEeeCCCCC
Q psy16913 1 MFLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQIGMKRLKVQLKRPKDA 77 (81)
Q Consensus 1 lF~~~G~i~~v~i~~~~~~~~~kg~~~~~~~~~~~~~~~~fV~f~~~~~A~~Ai~~lng~~i~g~~i~V~~a~~~~~ 77 (81)
+|++||+|.+|.+.. +++++| ||||+|.+.++|+.|+..|||..+.|++|+|+||.++..
T Consensus 53 ~F~~~G~I~~v~i~~---~~~~rG--------------~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~V~~a~~~~~ 112 (127)
T 2a3j_A 53 LASSQGDILDIVVDL---SDDNSG--------------KAYIVFATQESAQAFVEAFQGYPFQGNPLVITFSETPQS 112 (127)
T ss_dssp HHHHHSCEEEEEECC---CCSSCC--------------CEEEEESSHHHHHHHHHHSTTCCCTTSCCEEEECCCCCH
T ss_pred HhccCCCeEEEEecc---CCCcCC--------------EEEEEECCHHHHHHHHHHHCCCEeCCCEEEEEEccCcch
Confidence 489999999987753 678888 999999999999999999999999999999999987653
No 85
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.64 E-value=3.6e-17 Score=88.77 Aligned_cols=57 Identities=25% Similarity=0.465 Sum_probs=54.0
Q ss_pred CccCCceeeEEEEEecCCCCCcccccccccccccCcceEEEEEEcCHHHHHHHHHhhCCcEECCEEEEEEee
Q psy16913 1 MFLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQIGMKRLKVQLK 72 (81)
Q Consensus 1 lF~~~G~i~~v~i~~~~~~~~~kg~~~~~~~~~~~~~~~~fV~f~~~~~A~~Ai~~lng~~i~g~~i~V~~a 72 (81)
+|++||+|.++.++.++.++.++| ||||+|.++++|++|++ |||..++|++|.|++|
T Consensus 19 ~F~~~G~i~~v~i~~~~~~~~~~g--------------~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 19 YFEQFGKVDDAMLMFDKTTNRHRG--------------FGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp HHHTTSCCSEECCCBCSSSTTSCB--------------EEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred HHHhcCCEEEEEEEecCCCCCcCc--------------EEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 488999999999999998999999 99999999999999998 9999999999999976
No 86
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=8.9e-16 Score=88.64 Aligned_cols=62 Identities=23% Similarity=0.452 Sum_probs=55.1
Q ss_pred CccCCceeeEEEEEecCCCCCcccccccccccccCcceEEEEEEcCHHHHHHHHHhhCCcEECCEEEEEEeeCCCCCCC
Q psy16913 1 MFLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQIGMKRLKVQLKRPKDAAR 79 (81)
Q Consensus 1 lF~~~G~i~~v~i~~~~~~~~~kg~~~~~~~~~~~~~~~~fV~f~~~~~A~~Ai~~lng~~i~g~~i~V~~a~~~~~~~ 79 (81)
+|++||+|.++.|+.+ +.++| ||||+|.+.++|++|++.||+..++|+.|.|+++.++....
T Consensus 42 ~F~~~G~v~~~~i~~~---~~~~g--------------~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~~~~ 103 (109)
T 1x4a_A 42 VFYKYGAIRDIDLKNR---RGGPP--------------FAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPRSGRGTG 103 (109)
T ss_dssp HHGGGSCEEEEEECCS---SSSSC--------------CEEEEESCHHHHHHHHHHHTTCEETTEECEEECCCCCCCCC
T ss_pred HHHhcCCeEEEEEEEC---CCCCc--------------EEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcccCCCCC
Confidence 5899999999998654 45788 99999999999999999999999999999999998876543
No 87
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.64 E-value=7.5e-16 Score=93.00 Aligned_cols=60 Identities=28% Similarity=0.498 Sum_probs=57.1
Q ss_pred CccCCceeeEEEEEecCCCCCcccccccccccccCcceEEEEEEcCHHHHHHHHHhhCCcEECCEEEEEEeeCC
Q psy16913 1 MFLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQIGMKRLKVQLKRP 74 (81)
Q Consensus 1 lF~~~G~i~~v~i~~~~~~~~~kg~~~~~~~~~~~~~~~~fV~f~~~~~A~~Ai~~lng~~i~g~~i~V~~a~~ 74 (81)
+|++||+|.++.++.++.++.++| ||||+|.+.++|.+|+..|||..++|+.|.|+||++
T Consensus 107 ~f~~~G~i~~~~i~~~~~~~~~~g--------------~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~ 166 (166)
T 3md3_A 107 AFKDFPSYLSGHVMWDMQTGSSRG--------------YGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAK 166 (166)
T ss_dssp HHTTSTTEEEEEEEECTTTCCEEE--------------EEEEEESCHHHHHHHHHHHTTCEETTEECEEEESCC
T ss_pred HHhccCCeeEEEEEecCCCCCcce--------------EEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEecCC
Confidence 489999999999999988999999 999999999999999999999999999999999864
No 88
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.63 E-value=9.2e-16 Score=85.97 Aligned_cols=60 Identities=17% Similarity=0.331 Sum_probs=55.9
Q ss_pred CccCCceeeEEEEEecCCCCCcccccccccccccCcceEEEEEEcCHHHHHHHHHhhCCcEECCEEEEEEeeCCCCC
Q psy16913 1 MFLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQIGMKRLKVQLKRPKDA 77 (81)
Q Consensus 1 lF~~~G~i~~v~i~~~~~~~~~kg~~~~~~~~~~~~~~~~fV~f~~~~~A~~Ai~~lng~~i~g~~i~V~~a~~~~~ 77 (81)
+|++| .|.+++|+.+ .+|+++| ||||+|.+.++|++|+. |||..+.|+.|.|.++.++..
T Consensus 30 ~F~~~-~i~~v~i~~~-~~g~~~g--------------~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~~a~~~~~ 89 (91)
T 2dgw_A 30 FLAPL-KPVAIRIVRN-AHGNKTG--------------YIFVDFSNEEEVKQALK-CNREYMGGRYIEVFREKSGPS 89 (91)
T ss_dssp HHTTS-CCSEEEEEEC-TTSCEEE--------------EEEEECSSHHHHHHHHH-SCSEEETTEEEEEEEESSCCC
T ss_pred HHhhC-CceEEEEEEC-CCCCCce--------------EEEEEECCHHHHHHHHH-hCCceeCCcEEEEEECCcCCC
Confidence 48899 9999999999 6899999 99999999999999999 999999999999999988754
No 89
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.63 E-value=2.7e-17 Score=98.15 Aligned_cols=62 Identities=19% Similarity=0.389 Sum_probs=58.0
Q ss_pred CccCCceeeE--EEEEecCCCCCcccccccccccccCcceEEEEEEcCHHHHHHHHHhhCCc----EECCEEEEEEeeCC
Q psy16913 1 MFLPFGNVIS--SKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGF----QIGMKRLKVQLKRP 74 (81)
Q Consensus 1 lF~~~G~i~~--v~i~~~~~~~~~kg~~~~~~~~~~~~~~~~fV~f~~~~~A~~Ai~~lng~----~i~g~~i~V~~a~~ 74 (81)
+|++||.|.. |+|++|+.+|+++| ||||+|.+. +|.+|+..|||. .++|+.|.|+++.+
T Consensus 43 ~F~~~G~v~~~~v~i~~d~~tg~~rG--------------~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~gr~l~V~~a~~ 107 (131)
T 2m2b_A 43 ALAPYAVLSSSNVRVIKDKQTQLNRG--------------FAFIQLSTI-EAAQLLQILQALHPPLTIDGKTINVEFAKG 107 (131)
T ss_dssp HHGGGCCCCTTTEECCBCSSSSSBCS--------------CEEEECCHH-HHHHHHHHHTTCCCSCCGGGCCCCCEECCC
T ss_pred HHHHhCCcceeeEEEEEcCCCCCcce--------------EEEEEECCH-HHHHHHHHhcCCCCCccCCCEEEEEEECCC
Confidence 4899999977 99999999999999 999999999 999999999999 99999999999988
Q ss_pred CCC
Q psy16913 75 KDA 77 (81)
Q Consensus 75 ~~~ 77 (81)
+..
T Consensus 108 ~~~ 110 (131)
T 2m2b_A 108 SKR 110 (131)
T ss_dssp SCC
T ss_pred CCC
Confidence 654
No 90
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.43 E-value=2.4e-17 Score=96.31 Aligned_cols=64 Identities=28% Similarity=0.406 Sum_probs=59.8
Q ss_pred CccCCceeeE--------EEEEecCCCCCcccccccccccccCcceEEEEEEcCHHHHHHHHHhhCCcEECCEEEEEEee
Q psy16913 1 MFLPFGNVIS--------SKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQIGMKRLKVQLK 72 (81)
Q Consensus 1 lF~~~G~i~~--------v~i~~~~~~~~~kg~~~~~~~~~~~~~~~~fV~f~~~~~A~~Ai~~lng~~i~g~~i~V~~a 72 (81)
+|++||+|.+ +.|+.++.++.++| ||||+|.+.++|++|++.|||..+.|+.|.|+++
T Consensus 27 ~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g--------------~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 92 (116)
T 2lcw_A 27 YFKQIGIIKTNKKTGQPMINLYTDRETGKLKG--------------EATVSFDDPPSAKAAIDWFDGKEFSGNPIKVSFA 92 (116)
Confidence 5899999999 99999988999999 9999999999999999999999999999999999
Q ss_pred CCCCCC
Q psy16913 73 RPKDAA 78 (81)
Q Consensus 73 ~~~~~~ 78 (81)
.++..+
T Consensus 93 ~~~~~~ 98 (116)
T 2lcw_A 93 TRRADF 98 (116)
Confidence 887654
No 91
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=2e-15 Score=85.63 Aligned_cols=59 Identities=31% Similarity=0.520 Sum_probs=52.9
Q ss_pred CccCCceeeEEEEEecCCCCCcccccccccccccCcceEEEEEEcCHHHHHHHHHhhCCcEECCEEEEEEeeCCCCCCC
Q psy16913 1 MFLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQIGMKRLKVQLKRPKDAAR 79 (81)
Q Consensus 1 lF~~~G~i~~v~i~~~~~~~~~kg~~~~~~~~~~~~~~~~fV~f~~~~~A~~Ai~~lng~~i~g~~i~V~~a~~~~~~~ 79 (81)
+|++||+|.++.|. .++| ||||+|.+.++|++|+..|||..+.|+.|.|+++.++....
T Consensus 33 ~F~~~G~i~~v~i~------~~~g--------------~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~~~~~~~ 91 (97)
T 1x5p_A 33 AFSPFGNIIDLSMD------PPRN--------------CAFVTYEKMESADQAVAELNGTQVESVQLKVNIARKQPMLD 91 (97)
T ss_dssp HHTTTSCEEEEEEE------TTTT--------------EEEEEESSHHHHHHHHHHTTTEEETTEEEEEECCSSCCCCC
T ss_pred HHhhCCCEEEEEec------CCCC--------------EEEEEECCHHHHHHHHHHhCCCeECCeEEEEEECCCCCCCC
Confidence 58999999999984 4577 99999999999999999999999999999999998876543
No 92
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.62 E-value=1.5e-16 Score=86.47 Aligned_cols=58 Identities=26% Similarity=0.419 Sum_probs=54.8
Q ss_pred CccCCceeeEEEEEecCCCCCcccccccccccccCcceEEEEEEcCHHHHHHHHHhhCCcEECCEEEEEEeeC
Q psy16913 1 MFLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQIGMKRLKVQLKR 73 (81)
Q Consensus 1 lF~~~G~i~~v~i~~~~~~~~~kg~~~~~~~~~~~~~~~~fV~f~~~~~A~~Ai~~lng~~i~g~~i~V~~a~ 73 (81)
+|++||+|.++.++.++.++.++| ||||+|.++++|++|++.+| ..++|+.|.|++|.
T Consensus 20 ~F~~~G~v~~v~i~~~~~~~~~~g--------------~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a~ 77 (77)
T 1uaw_A 20 YFGQFGEVKECLVMRDPLTKRSRG--------------FGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVAF 77 (77)
T ss_dssp HHTTTSCCCCEEEECCCCSSSCSS--------------EEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEECC
T ss_pred HHHhcCCEEEEEEecCCCCCCcCc--------------eEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEecC
Confidence 489999999999999998999999 99999999999999999999 99999999999873
No 93
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=5e-16 Score=90.11 Aligned_cols=60 Identities=28% Similarity=0.556 Sum_probs=55.1
Q ss_pred CccCCceeeEEEEEecCCCCCcccccccccccccCcceEEEEEEcCHHHHHHHHHhhCCcEECCEEEEEEeeCCCC
Q psy16913 1 MFLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQIGMKRLKVQLKRPKD 76 (81)
Q Consensus 1 lF~~~G~i~~v~i~~~~~~~~~kg~~~~~~~~~~~~~~~~fV~f~~~~~A~~Ai~~lng~~i~g~~i~V~~a~~~~ 76 (81)
+|++||+|.+++++.++ +.++| ||||+|.+.++|++|++.|||..++|+.|.|+++.++.
T Consensus 49 ~F~~~G~i~~v~i~~~~--~~~kg--------------~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~ 108 (109)
T 2err_A 49 MFGQFGKILDVEIIFNE--RGSKG--------------FGFVTFENSADADRAREKLHGTVVEGRKIEVNNATARV 108 (109)
T ss_dssp HGGGTCCCSCEEECCBT--TBCTT--------------EEEEECCCSHHHHHHHHHHTTCEETTEECEEEECCCSC
T ss_pred HHHhcCCEEEEEEEECC--CCCce--------------EEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCCc
Confidence 58999999999999886 34788 99999999999999999999999999999999998863
No 94
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=2.6e-16 Score=90.99 Aligned_cols=58 Identities=21% Similarity=0.162 Sum_probs=54.1
Q ss_pred CccCCceeeEEEEEecCCCCCcccccccccccccCcceEEEEEEcCHHHHHHHHHhhCCcEECCEEEEEEeeCC
Q psy16913 1 MFLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQIGMKRLKVQLKRP 74 (81)
Q Consensus 1 lF~~~G~i~~v~i~~~~~~~~~kg~~~~~~~~~~~~~~~~fV~f~~~~~A~~Ai~~lng~~i~g~~i~V~~a~~ 74 (81)
+|++||+|.+|.|++++. +.++| ||||+|.++++|++|+. +||..++|+.|.|.++..
T Consensus 31 ~F~~~G~v~~v~i~~d~~-g~~rG--------------~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~~~~~ 88 (103)
T 1s79_A 31 WLEDKGQVLNIQMRRTLH-KAFKG--------------SIFVVFDSIESAKKFVE-TPGQKYKETDLLILFKDD 88 (103)
T ss_dssp HHHTSSCEEEEEEECCCT-TSCCC--------------EEEEEESSHHHHHHHHT-SSCCCCTTTTCEEEEHHH
T ss_pred HHhhcCCEEEEEEEECCC-CCCcc--------------EEEEEECCHHHHHHHHH-cCCCEECCEEEEEEEchH
Confidence 489999999999999986 89999 99999999999999999 999999999999998743
No 95
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.62 E-value=8.3e-16 Score=96.59 Aligned_cols=64 Identities=27% Similarity=0.490 Sum_probs=60.0
Q ss_pred CccCCceeeEEEEEecCCCCCcccccccccccccCcceEEEEEEcCHHHHHHHHHhhCCcEECCEEEEEEeeCCCCCC
Q psy16913 1 MFLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQIGMKRLKVQLKRPKDAA 78 (81)
Q Consensus 1 lF~~~G~i~~v~i~~~~~~~~~kg~~~~~~~~~~~~~~~~fV~f~~~~~A~~Ai~~lng~~i~g~~i~V~~a~~~~~~ 78 (81)
+|++||+|.++.++.++.+|.++| ||||+|.+.++|.+|++.|||..++|+.|.|+++.++...
T Consensus 145 ~f~~~G~v~~v~i~~~~~~g~~~g--------------~afV~F~~~~~A~~A~~~l~g~~~~g~~i~V~~a~~~~~~ 208 (216)
T 2qfj_A 145 VFEAFGKIKSATLARDPTTGKHKG--------------YGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKAVTPPMP 208 (216)
T ss_dssp HHTTSSCEEEEEEEECTTTCCEEE--------------EEEEEESSHHHHHHHHHHHTTCBCSSSBCEEEECSSCSST
T ss_pred HHhccCCeeEEEEEecCCCCCcCc--------------eEEEEecCHHHHHHHHHHccCCEeCCcEEEEEEecCCCCC
Confidence 489999999999999998999999 9999999999999999999999999999999999887543
No 96
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.62 E-value=2.3e-16 Score=102.18 Aligned_cols=60 Identities=22% Similarity=0.292 Sum_probs=57.4
Q ss_pred CccCCc--eeeEEEEEecCCCCCcccccccccccccCcceEEEEEEcCHHHHHHHHHhhCCcEECCEEEEEEeeCC
Q psy16913 1 MFLPFG--NVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQIGMKRLKVQLKRP 74 (81)
Q Consensus 1 lF~~~G--~i~~v~i~~~~~~~~~kg~~~~~~~~~~~~~~~~fV~f~~~~~A~~Ai~~lng~~i~g~~i~V~~a~~ 74 (81)
+|++|| +|.+|+|++|+.+++++| ||||+|.+.++|++||+.|||..|.|+.|+|++|.+
T Consensus 88 ~F~~~G~~~v~~v~i~~d~~tg~skG--------------faFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~a~~ 149 (229)
T 3q2s_C 88 AVHSLGVNDILEIKFFENRANGQSKG--------------FALVGVGSEASSKKLMDLLPKRELHGQNPVVTPVNK 149 (229)
T ss_dssp HHHTTTCCCEEEEEEEECTTTCCEEE--------------EEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEECCH
T ss_pred HHHHHCCcceEEEEEEecCCCCccce--------------EEEEEECCHHHHHHHHHHcCCCeECCEEeEEEECCC
Confidence 589999 999999999999999999 999999999999999999999999999999999864
No 97
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.62 E-value=1.2e-15 Score=90.38 Aligned_cols=59 Identities=22% Similarity=0.300 Sum_probs=53.3
Q ss_pred ccCCceeeEEEEEecCC----CCCcccccccccccccCcceEEEEEEcCHHHHHHHHHhhCCcEECCEEEEEEeeCC
Q psy16913 2 FLPFGNVISSKVFIDRA----TNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQIGMKRLKVQLKRP 74 (81)
Q Consensus 2 F~~~G~i~~v~i~~~~~----~~~~kg~~~~~~~~~~~~~~~~fV~f~~~~~A~~Ai~~lng~~i~g~~i~V~~a~~ 74 (81)
|++||+|.+|.|++++. ++.++| |+||+|.++++|.+|++.|||..++||.|.|.++..
T Consensus 46 f~k~G~V~~v~I~~~~~~~~~~~~~~G--------------~~FV~F~~~e~A~~Ai~~LnGr~f~GR~i~v~~~~~ 108 (118)
T 3ue2_A 46 CGKFGAVNRVIIYQEKQGEEEDAEIIV--------------KIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYDQ 108 (118)
T ss_dssp HTTTSCEEEEEEEEEEESSSTTCEEEE--------------EEEEEESSHHHHHHHHHHHTTCEETTEECEEEEECH
T ss_pred HhccCCEeEEEEeecCCCcccCCcceE--------------EEEEEECCHHHHHHHHHHHCCCEECCcEEEEEEcCh
Confidence 78999999999999874 345667 999999999999999999999999999999999854
No 98
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.62 E-value=1.1e-15 Score=94.87 Aligned_cols=64 Identities=28% Similarity=0.412 Sum_probs=60.1
Q ss_pred CccCCceeeEEEEEecCCCCCcccccccccccccCcceEEEEEEcCHHHHHHHHHhhCCcEECCEEEEEEeeCCCCCC
Q psy16913 1 MFLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQIGMKRLKVQLKRPKDAA 78 (81)
Q Consensus 1 lF~~~G~i~~v~i~~~~~~~~~kg~~~~~~~~~~~~~~~~fV~f~~~~~A~~Ai~~lng~~i~g~~i~V~~a~~~~~~ 78 (81)
+|++||+|.++.++.++.++.++| ||||+|.++++|.+|++.|||..++|+.|.|+++.++..+
T Consensus 134 ~f~~~G~v~~~~~~~~~~~~~~~g--------------~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~ 197 (198)
T 2yh0_A 134 LLTSFGPLKAFNLVKDSATGLSKG--------------YAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRASVGAKN 197 (198)
T ss_dssp HHHTBSCEEEEEEEECTTTCSEEE--------------EEEEEESSSSHHHHHHHHHTTCEETTEECEEEESCCCCCC
T ss_pred HHHHcCCccEEEEeecCCCCCcce--------------EEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCCCCC
Confidence 488999999999999988999999 9999999999999999999999999999999999987653
No 99
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.62 E-value=1.8e-15 Score=86.16 Aligned_cols=60 Identities=22% Similarity=0.379 Sum_probs=53.2
Q ss_pred CccCCceeeEEEEEecCCCCCcccccccccccccCcceEEEEEEcCHHHHHHHHHhhCCcEECCEEEEEEeeCCCCCC
Q psy16913 1 MFLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQIGMKRLKVQLKRPKDAA 78 (81)
Q Consensus 1 lF~~~G~i~~v~i~~~~~~~~~kg~~~~~~~~~~~~~~~~fV~f~~~~~A~~Ai~~lng~~i~g~~i~V~~a~~~~~~ 78 (81)
+|++||+| +++.+ .++.++| ||||+|.+.++|++|++.|||..+.|+.|.|+++.++...
T Consensus 35 ~F~~~g~v---~~~~~-~~g~~~g--------------~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~~ 94 (101)
T 2fc9_A 35 VFEKATFI---KVPQN-QNGKSKG--------------YAFIEFASFEDAKEALNSCNKREIEGRAIRLELQGPRGSP 94 (101)
T ss_dssp HCSSCSEE---ECCBC-SSSCBCS--------------EEEEECSSHHHHHHHHHHTSSEEETTEEEEEEECSSCCCC
T ss_pred HHHhCCEE---EEEEC-CCCCEee--------------EEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEEcCCCCCC
Confidence 48899987 56666 5788899 9999999999999999999999999999999999887654
No 100
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.61 E-value=4.3e-15 Score=84.64 Aligned_cols=62 Identities=29% Similarity=0.471 Sum_probs=55.0
Q ss_pred CccCCceeeEEEEEecCCCCCcccccccccccccCcceEEEEEEcCHHHHHHHHHhhCCcEECCEEEEEEeeCCCCCCC
Q psy16913 1 MFLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQIGMKRLKVQLKRPKDAAR 79 (81)
Q Consensus 1 lF~~~G~i~~v~i~~~~~~~~~kg~~~~~~~~~~~~~~~~fV~f~~~~~A~~Ai~~lng~~i~g~~i~V~~a~~~~~~~ 79 (81)
+|+.| ..+.++.++.++.++| ||||+|.+.++|++|++.|||..|.|+.|.|++++++..+.
T Consensus 35 ~F~~~---~~~~~~~~~~~~~~~g--------------~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~~~~ 96 (102)
T 2fc8_A 35 SFDGS---VRARIVTDRETGSSKG--------------FGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKPKGEGG 96 (102)
T ss_dssp TSTTC---SEEEEEECSSSCSEEE--------------EEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCCCCSSS
T ss_pred HhcCC---eEEEEEecCCCCCcCc--------------EEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEecCCCCCC
Confidence 46655 4678888988999999 99999999999999999999999999999999999887643
No 101
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.61 E-value=1.4e-15 Score=88.08 Aligned_cols=56 Identities=16% Similarity=0.241 Sum_probs=50.1
Q ss_pred CccCCceeeEEEEEecCCCCCcccccccccccccCcceEEEEEEcCHHHHHHHHHhhCCc--EECCEEEEEEeeCCCC
Q psy16913 1 MFLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGF--QIGMKRLKVQLKRPKD 76 (81)
Q Consensus 1 lF~~~G~i~~v~i~~~~~~~~~kg~~~~~~~~~~~~~~~~fV~f~~~~~A~~Ai~~lng~--~i~g~~i~V~~a~~~~ 76 (81)
+|++||+|.+|.|+++ +| ||||+|.+.++|+.|++.||+. .+.|++|+|++|+++.
T Consensus 36 lF~~fG~V~~v~i~~~------kg--------------~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a~~~~ 93 (102)
T 1x4d_A 36 LVEPFGVISNHLILNK------IN--------------EAFIEMATTEDAQAAVDYYTTTPALVFGKPVRVHLSQKYK 93 (102)
T ss_dssp TTGGGSCEEEEEECSS------SS--------------CEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEEECCCT
T ss_pred HHHhcCCEEEEEEEcC------CC--------------EEEEEECCHHHHHHHHHHHcCCCceECCcEEEEEECCCCC
Confidence 6999999999999865 47 9999999999999999999864 5999999999998654
No 102
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.60 E-value=1.7e-16 Score=87.50 Aligned_cols=54 Identities=20% Similarity=0.497 Sum_probs=49.2
Q ss_pred CccCCceeeEEEEEecCCCCCcccccccccccccCcceEEEEEEcCHHHHHHHHHhhCCcEECCE-EEEEE
Q psy16913 1 MFLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQIGMK-RLKVQ 70 (81)
Q Consensus 1 lF~~~G~i~~v~i~~~~~~~~~kg~~~~~~~~~~~~~~~~fV~f~~~~~A~~Ai~~lng~~i~g~-~i~V~ 70 (81)
+|++||+|.++.|+ +.+|+++| ||||+|.++++|++|++.|||..++|+ +|+|+
T Consensus 27 ~F~~~G~i~~v~i~--~~~g~~~g--------------~afV~f~~~~~A~~Ai~~lng~~~~g~~~l~V~ 81 (81)
T 2krb_A 27 IFSKFGKITNDFYP--EEDGKTKG--------------YIFLEYASPAHAVDAVKNADGYKLDKQHTFRVN 81 (81)
T ss_dssp HHHTTCCEEEEECC--CBTTBCCC--------------EEEEEESSHHHHHHHHTTSSSCCCSSSSCCCCC
T ss_pred HHhhcCCeEEEEec--CCCCcEeE--------------EEEEEECCHHHHHHHHHHhcCcccCCceeEEeC
Confidence 48999999999987 45889999 999999999999999999999999999 88763
No 103
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=1.7e-15 Score=87.51 Aligned_cols=59 Identities=31% Similarity=0.491 Sum_probs=53.7
Q ss_pred CccCCceeeEEEEEecCCCCCcccccccccccccCcceEEEEEEcCHHHHHHHHHhhCCcEECCEEEEEEeeCCCCCCC
Q psy16913 1 MFLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQIGMKRLKVQLKRPKDAAR 79 (81)
Q Consensus 1 lF~~~G~i~~v~i~~~~~~~~~kg~~~~~~~~~~~~~~~~fV~f~~~~~A~~Ai~~lng~~i~g~~i~V~~a~~~~~~~ 79 (81)
+|++||+|.++.|+.+ +| ||||+|.+.++|++|+..|||..+.|+.|.|.++.++....
T Consensus 45 ~F~~~G~i~~v~i~~~------~g--------------~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~~ 103 (109)
T 1x4g_A 45 TFSPFGQIMEIRVFPE------KG--------------YSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGKESPDMT 103 (109)
T ss_dssp HHHHHSCEEEEEEETT------TT--------------EEEEEESSHHHHHHHHHHHTTCEETTEECEEECCCCCCSSC
T ss_pred HHHhcCCeEEEEEeCC------CC--------------EEEEEECCHHHHHHHHHHcCCCEECCcEEEEEecCCCCCCC
Confidence 4889999999999876 67 99999999999999999999999999999999998876543
No 104
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.60 E-value=2.4e-15 Score=91.14 Aligned_cols=63 Identities=30% Similarity=0.534 Sum_probs=59.3
Q ss_pred CccCCceeeEEEEEecCCCCCcccccccccccccCcceEEEEEEcCHHHHHHHHHhhCCcEECCEEEEEEeeCCCCC
Q psy16913 1 MFLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQIGMKRLKVQLKRPKDA 77 (81)
Q Consensus 1 lF~~~G~i~~v~i~~~~~~~~~kg~~~~~~~~~~~~~~~~fV~f~~~~~A~~Ai~~lng~~i~g~~i~V~~a~~~~~ 77 (81)
+|++||+|.++.++.++.+|.++| ||||+|.++++|++|++.|||..+.|+.|.|.++.++..
T Consensus 23 ~f~~~G~i~~v~i~~~~~~~~~~g--------------~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~~~ 85 (168)
T 1b7f_A 23 LFRAIGPINTCRIMRDYKTGYSYG--------------YAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYARPGGE 85 (168)
T ss_dssp HHHTTSCEEEEECCEETTTTEECS--------------EEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCSS
T ss_pred HHHhcCCeeEEEEEEeCCCCccce--------------EEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecCCCcc
Confidence 488999999999999998999999 999999999999999999999999999999999987654
No 105
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.60 E-value=7.9e-16 Score=92.89 Aligned_cols=60 Identities=17% Similarity=0.258 Sum_probs=53.3
Q ss_pred CccCCceeeEEEEEecCCCCCcccccccccccccCcceEEEEEEcC----HHH----HHHHHH--hhCCcEECCEEEEEE
Q psy16913 1 MFLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDN----PAS----AHTAIQ--AMNGFQIGMKRLKVQ 70 (81)
Q Consensus 1 lF~~~G~i~~v~i~~~~~~~~~kg~~~~~~~~~~~~~~~~fV~f~~----~~~----A~~Ai~--~lng~~i~g~~i~V~ 70 (81)
+|++||+|.++.++.|+.||.++| ||||+|.+ +++ |.+|+. .+||..|+|+.|+|+
T Consensus 26 ~Fs~fGeV~~~~li~Dp~Tg~slG--------------fgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~I~Gr~irV~ 91 (136)
T 2j8a_A 26 YFKKYGEISHFEAFNDPNSALPLH--------------VYLIKYASSDGKINDAAKAAFSAVRKHESSGCFIMGFKFEVI 91 (136)
T ss_dssp HHHTTSCCSEEEEEECTTTCCEEE--------------EEEEECC------CCHHHHHHHHHHHTTTTCEEETTEEEEEE
T ss_pred HHHhcCCeEEEEEEecCCCCceee--------------EEEEEECCCCCCcchHHHHHHHHHHHhhhcCCeecCcEEEEE
Confidence 489999999999999999999999 99999996 444 788988 799999999999999
Q ss_pred eeCC
Q psy16913 71 LKRP 74 (81)
Q Consensus 71 ~a~~ 74 (81)
+.+.
T Consensus 92 ln~~ 95 (136)
T 2j8a_A 92 LNKH 95 (136)
T ss_dssp ECCT
T ss_pred ECcc
Confidence 8754
No 106
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.60 E-value=2.8e-15 Score=86.64 Aligned_cols=57 Identities=18% Similarity=0.329 Sum_probs=52.6
Q ss_pred CccCCceeeEEEEEecCCCCCcccccccccccccCcceEEEEEEcCHHHHHHHHHhhCCcEECC-----EEEEEEeeCCC
Q psy16913 1 MFLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQIGM-----KRLKVQLKRPK 75 (81)
Q Consensus 1 lF~~~G~i~~v~i~~~~~~~~~kg~~~~~~~~~~~~~~~~fV~f~~~~~A~~Ai~~lng~~i~g-----~~i~V~~a~~~ 75 (81)
+|++||+|.++.|+.+ | ||||+|.+.++|++||+.|||..+.| +.|+|++|.++
T Consensus 35 ~F~~~G~i~~~~i~~~-------g--------------~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i~V~~a~~~ 93 (108)
T 1x4c_A 35 HMREAGDVCYADVYRD-------G--------------TGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVKVDGPR 93 (108)
T ss_dssp HHGGGSCEEEEEEETT-------T--------------EEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEEEEEESSCC
T ss_pred HHHhcCCEeEEEEecC-------C--------------EEEEEECCHHHHHHHHHHHCcCCccCCcCcceEEEEEeCCCC
Confidence 5899999999999876 7 99999999999999999999999999 99999999887
Q ss_pred CCC
Q psy16913 76 DAA 78 (81)
Q Consensus 76 ~~~ 78 (81)
...
T Consensus 94 ~~~ 96 (108)
T 1x4c_A 94 SPS 96 (108)
T ss_dssp SCC
T ss_pred CCC
Confidence 643
No 107
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.60 E-value=2.9e-15 Score=90.49 Aligned_cols=63 Identities=37% Similarity=0.636 Sum_probs=59.1
Q ss_pred CccCCceeeEEEEEecCCCCCcccccccccccccCcceEEEEEEcCHHHHHHHHHhhCCcEECCEEEEEEeeCCCCC
Q psy16913 1 MFLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQIGMKRLKVQLKRPKDA 77 (81)
Q Consensus 1 lF~~~G~i~~v~i~~~~~~~~~kg~~~~~~~~~~~~~~~~fV~f~~~~~A~~Ai~~lng~~i~g~~i~V~~a~~~~~ 77 (81)
+|++||+|.++.++.++.+|.++| ||||+|.++++|++|++.|||..+.|+.|.|.++.+...
T Consensus 22 ~f~~~G~i~~v~~~~~~~~~~~~g--------------~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~~~ 84 (167)
T 1fxl_A 22 LFGSIGEIESCKLVRDKITGQSLG--------------YGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSA 84 (167)
T ss_dssp HHHTTSCEEEEEEEECTTTCCEEE--------------EEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCCG
T ss_pred HHHhcCCeEEEEEEeCCCCCccee--------------EEEEEECCHHHHHHHHHHcCCCccCCceEEEEecCCCcc
Confidence 488999999999999998999999 999999999999999999999999999999999987653
No 108
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=3.1e-15 Score=87.14 Aligned_cols=59 Identities=24% Similarity=0.337 Sum_probs=52.5
Q ss_pred CccCCceeeEEEEEecCCCCCcccccccccccccCcceEEEEEEcCHHHHHHHHHhhCCcEECCEEEEEEeeCCCCC
Q psy16913 1 MFLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQIGMKRLKVQLKRPKDA 77 (81)
Q Consensus 1 lF~~~G~i~~v~i~~~~~~~~~kg~~~~~~~~~~~~~~~~fV~f~~~~~A~~Ai~~lng~~i~g~~i~V~~a~~~~~ 77 (81)
+|++||+|.+|.| .++ .++| ||||+|.+.++|++|+..|||..++|+.|.|+++.++..
T Consensus 46 ~f~~~G~v~~v~i-~~~---~~~G--------------~afV~f~~~~~A~~Ai~~lng~~~~gr~l~v~~a~~~~~ 104 (112)
T 2dit_A 46 ECSKFGQIRKLLL-FDR---HPDG--------------VASVSFRDPEEADYCIQTLDGRWFGGRQITAQAWDGTTD 104 (112)
T ss_dssp HGGGTSCCSEEEE-ETT---CTTC--------------EEEEECSCHHHHHHHHHHSTTCEETTEECEEEECCSCCC
T ss_pred HHHccCCEeEEEE-ecC---CCCE--------------EEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEeCCCCC
Confidence 4899999999955 554 3688 999999999999999999999999999999999988654
No 109
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.60 E-value=2e-15 Score=92.00 Aligned_cols=59 Identities=31% Similarity=0.469 Sum_probs=56.1
Q ss_pred CccCCceeeEEEEEecCCCCCcccccccccccccCcceEEEEEEcCHHHHHHHHHhhCCcEECCEEEEEEeeC
Q psy16913 1 MFLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQIGMKRLKVQLKR 73 (81)
Q Consensus 1 lF~~~G~i~~v~i~~~~~~~~~kg~~~~~~~~~~~~~~~~fV~f~~~~~A~~Ai~~lng~~i~g~~i~V~~a~ 73 (81)
+|++||+|.++.++.++.+|.++| ||||+|.++++|++|++.|||..++|+.|.|++|.
T Consensus 114 ~f~~~G~v~~v~i~~~~~~g~~~g--------------~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~As 172 (172)
T 2g4b_A 114 LLTSFGPLKAFNLVKDSATGLSKG--------------YAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRAS 172 (172)
T ss_dssp HHHTTSCEEEEEEEECTTTCSEEE--------------EEEEEESSTTHHHHHHHHHTTCEETTEECEEEECC
T ss_pred HHHhcCCceEEEEEecCCCCCcce--------------EEEEEeCCHHHHHHHHHHcCCCEECCeEEEEEeCC
Confidence 488999999999999988999999 99999999999999999999999999999999973
No 110
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=9e-15 Score=84.42 Aligned_cols=58 Identities=19% Similarity=0.254 Sum_probs=51.6
Q ss_pred CccCCceeeEEEEEecCCCCCcccccccccccccCcceEEEEEEcCHHHHHHHHHhh--CCcEECCEEEEEEeeCCCCCC
Q psy16913 1 MFLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAM--NGFQIGMKRLKVQLKRPKDAA 78 (81)
Q Consensus 1 lF~~~G~i~~v~i~~~~~~~~~kg~~~~~~~~~~~~~~~~fV~f~~~~~A~~Ai~~l--ng~~i~g~~i~V~~a~~~~~~ 78 (81)
+|++||.|.++.|+.+ +| ||||+|.+.++|+.|++.| ++..+.|++|.|+++.++...
T Consensus 35 ~F~~fG~v~~v~i~~~------kg--------------~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a~~~~~~ 94 (101)
T 2cq1_A 35 LGLPFGKVTNILMLKG------KN--------------QAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQYSNHKELK 94 (101)
T ss_dssp TTTTTSCEEEEEEETT------TT--------------EEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEECSCSSCC
T ss_pred HHHhcCCEEEEEEECC------CC--------------EEEEEECCHHHHHHHHHHhccCCceECCcEEEEEEcCcccCc
Confidence 6999999999988864 67 9999999999999999976 578899999999999887654
No 111
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=1.5e-16 Score=92.54 Aligned_cols=65 Identities=20% Similarity=0.333 Sum_probs=54.3
Q ss_pred CccCCceeeEEEEEecCCCCCcccccccccccccCcceEEEEEEcCHHHHHHHHHhhCCcEECCEEEEEEeeCCCCCCC
Q psy16913 1 MFLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQIGMKRLKVQLKRPKDAAR 79 (81)
Q Consensus 1 lF~~~G~i~~v~i~~~~~~~~~kg~~~~~~~~~~~~~~~~fV~f~~~~~A~~Ai~~lng~~i~g~~i~V~~a~~~~~~~ 79 (81)
+|++||.|.++.+..+..++.++| ||||+|.+.++|++|++.|||..+.|+.|.|+++.++..+.
T Consensus 45 ~f~~~G~v~~~~~~~~~~~g~~~g--------------~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~~~~~~~ 109 (115)
T 2cpx_A 45 LFARFQEKKGPPIQFRMMTGRMRG--------------QAFITFPNKEIAWQALHLVNGYKLYGKILVIEFGKNKKQRS 109 (115)
T ss_dssp HTHHHHHSSSSCCEEEEECSSSCS--------------EEEEECSSHHHHHHHHHHSTTCBCSSCBCEEEECCCCSCCC
T ss_pred HHHHhCCccceEEEEEcCCCccce--------------EEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEccCCCCCC
Confidence 488999995443333333788889 99999999999999999999999999999999998877654
No 112
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.59 E-value=6e-15 Score=88.86 Aligned_cols=58 Identities=22% Similarity=0.446 Sum_probs=52.0
Q ss_pred CccCCceeeEEEEEecCCCCCcccccccccccccCcceE-EEEEEcCHHHHHHHHHhhCCcEECC--EEEEEEeeCCCCC
Q psy16913 1 MFLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCF-GFVSFDNPASAHTAIQAMNGFQIGM--KRLKVQLKRPKDA 77 (81)
Q Consensus 1 lF~~~G~i~~v~i~~~~~~~~~kg~~~~~~~~~~~~~~~-~fV~f~~~~~A~~Ai~~lng~~i~g--~~i~V~~a~~~~~ 77 (81)
+|++||+|.+|.|+.+. +| | |||+|.+.++|+.|++.|||..|.| +.|+|++++++.-
T Consensus 48 lFs~yG~V~~V~i~~~~-----~g--------------fqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~ak~~~l 108 (130)
T 3zzy_A 48 IFSKFGTVLKIITFTKN-----NQ--------------FQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKLTSL 108 (130)
T ss_dssp HHTTSSCEEEEEEEEET-----TE--------------EEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEEECSCSSC
T ss_pred HHhCcCCEEEEEEEcCC-----CC--------------cEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEEecCCCce
Confidence 59999999999887642 56 7 9999999999999999999999998 9999999988653
No 113
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.59 E-value=5.9e-16 Score=87.47 Aligned_cols=60 Identities=25% Similarity=0.427 Sum_probs=54.3
Q ss_pred CccCCceeeEEEEEecCCCCCcccccccccccccCcceEEEEEEcCHHHHHHHHHhhCCcEECCEEEEEEeeCCCCC
Q psy16913 1 MFLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQIGMKRLKVQLKRPKDA 77 (81)
Q Consensus 1 lF~~~G~i~~v~i~~~~~~~~~kg~~~~~~~~~~~~~~~~fV~f~~~~~A~~Ai~~lng~~i~g~~i~V~~a~~~~~ 77 (81)
+|++||+|.++.++. ++.++| ||||+|.+.++|+.|++.|||..+.|+.|.|+++.++..
T Consensus 32 ~f~~~G~i~~v~i~~---~~~~~g--------------~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~ 91 (97)
T 1nu4_A 32 IFSRFGQILDILVSR---SLKMRG--------------QAFVIFKEVSSATNALRSMQGFPFYDKPMRIQYAKTDSD 91 (97)
T ss_dssp HHGGGSCEEEEECCH---HHHHTT--------------CEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSSCCT
T ss_pred HHHhCCCEEEEEEEc---CCCcCc--------------EEEEEeCCHHHHHHHHHHhCCCEECCcEEEEEEccCCCc
Confidence 489999999998873 567788 999999999999999999999999999999999988754
No 114
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=1.1e-15 Score=89.19 Aligned_cols=58 Identities=19% Similarity=0.295 Sum_probs=51.9
Q ss_pred CccCCceeeEEEEEecCCCCCcccccccccccccCcceEEEEEEcCHHHHHHHHHhhC--CcEECCEEEEEEeeCCCCCC
Q psy16913 1 MFLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMN--GFQIGMKRLKVQLKRPKDAA 78 (81)
Q Consensus 1 lF~~~G~i~~v~i~~~~~~~~~kg~~~~~~~~~~~~~~~~fV~f~~~~~A~~Ai~~ln--g~~i~g~~i~V~~a~~~~~~ 78 (81)
+|++||+|.+|.|+++ +| ||||+|.+.++|+.|++.|+ +..+.|++|+|++|.++...
T Consensus 36 lF~~fG~V~~v~i~~~------kG--------------faFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~A~~~~~~ 95 (105)
T 1sjq_A 36 LGLPFGKVTNLLMLKG------KN--------------QAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSNHKELK 95 (105)
T ss_dssp HHHHHCCEEEEEEETT------TT--------------EEEEEESSHHHHHHHHHHHTTSCCEETTEECCBCCCSSSSCC
T ss_pred HHHhcCCEEEEEEEcC------CC--------------EEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEcCCCCCC
Confidence 5899999999999875 57 99999999999999999886 47899999999999887654
No 115
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.59 E-value=6e-16 Score=93.90 Aligned_cols=61 Identities=23% Similarity=0.563 Sum_probs=57.5
Q ss_pred CccCCceeeEEEEEecCCCCCcccccccccccccCcceEEEEEEcCHHHHHHHHHhhCCcEECCEEEEEEeeCCCC
Q psy16913 1 MFLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQIGMKRLKVQLKRPKD 76 (81)
Q Consensus 1 lF~~~G~i~~v~i~~~~~~~~~kg~~~~~~~~~~~~~~~~fV~f~~~~~A~~Ai~~lng~~i~g~~i~V~~a~~~~ 76 (81)
+|++||+|.++.++.++.+|.++| ||||+|.+.++|.+|++ +||..+.|++|.|++|.|+.
T Consensus 107 ~F~~~G~i~~~~i~~~~~~g~~~g--------------~afV~f~~~~~a~~A~~-~~~~~~~g~~i~V~~a~pk~ 167 (167)
T 2cjk_A 107 FFSQWGTIIDAQLMLDKDTGQSRG--------------FGFVTYDSADAVDRVCQ-NKFIDFKDRKIEIKRAEPRH 167 (167)
T ss_dssp HHHTTSCCSEEECCCSSSSSTTSE--------------EEEEEESSHHHHHHHHH-CSEECSSSSCEEEEECCCCC
T ss_pred HHHhCccEEEEEEEEcCCCCccce--------------EEEEEECCHHHHHHHHh-CCCEEeCCeEEEEeecCCCC
Confidence 488999999999999988999999 99999999999999998 89999999999999999863
No 116
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.59 E-value=5.3e-17 Score=92.64 Aligned_cols=63 Identities=17% Similarity=0.358 Sum_probs=57.0
Q ss_pred CccCCceeeEEEEEecCCCCCcccccccccccccCcceEEEEEEcCHHHHHHHHHhhCCcEECCEEEEEEeeCCCCCCC
Q psy16913 1 MFLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQIGMKRLKVQLKRPKDAAR 79 (81)
Q Consensus 1 lF~~~G~i~~v~i~~~~~~~~~kg~~~~~~~~~~~~~~~~fV~f~~~~~A~~Ai~~lng~~i~g~~i~V~~a~~~~~~~ 79 (81)
+|++||+|.. .++.++.++.++| ||||+|.+.++|++|++ |||..+.|+.|.|+++.++..++
T Consensus 37 ~F~~~G~v~~-~~~~~~~~g~~~g--------------~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~a~~~~~~~ 99 (101)
T 1fj7_A 37 AISELFAKND-LAVVDVRTGTNRK--------------FGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKPKGRDGTR 99 (101)
T ss_dssp HHHHHHHHHT-CCCCEEEEETTTT--------------EEEEEESSHHHHHHHHH-GGGCCBTTBCCEEECCSCCCCSS
T ss_pred HHHHhCCcce-EEEecCCCCCcCc--------------EEEEEECCHHHHHHHHh-cCCcEECCcEEEEEEcCCCCCCC
Confidence 4788999888 7777777888999 99999999999999999 99999999999999999987664
No 117
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.59 E-value=2.8e-15 Score=83.91 Aligned_cols=57 Identities=23% Similarity=0.537 Sum_probs=52.2
Q ss_pred CccCCceeeEEEEEecCCCCCcccccccccccccCcceEEEEEEcCHHHHHHHHHhhCCcEECCEEEEEEeeCCCCCCC
Q psy16913 1 MFLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQIGMKRLKVQLKRPKDAAR 79 (81)
Q Consensus 1 lF~~~G~i~~v~i~~~~~~~~~kg~~~~~~~~~~~~~~~~fV~f~~~~~A~~Ai~~lng~~i~g~~i~V~~a~~~~~~~ 79 (81)
+|++||+|.++.++ +| ||||+|.+.++|++|++.|||..+.|+.|.|+++.++..+.
T Consensus 28 ~F~~~G~i~~v~~~--------~g--------------~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~~~ 84 (90)
T 2dnq_A 28 LFEQYGKVLECDII--------KN--------------YGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEASKNKSKAS 84 (90)
T ss_dssp HHHTSSCEEEEEEE--------TT--------------EEEEEESSHHHHHHHHHHHTTCBCSSCBCEEECSSCCCCCC
T ss_pred HHHhCCCEEEEEEE--------CC--------------EEEEEECCHHHHHHHHHHhcCCccCCcEEEEEECCCCCCCC
Confidence 48899999999987 57 99999999999999999999999999999999998876543
No 118
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.59 E-value=1.1e-15 Score=87.24 Aligned_cols=60 Identities=32% Similarity=0.487 Sum_probs=55.2
Q ss_pred CccCCceeeEEEEEecCCCCCcccccccccccccCcceEEEEEEcCHHHHHHHHHhhCCcEECCEEEEEEeeCCCCC
Q psy16913 1 MFLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQIGMKRLKVQLKRPKDA 77 (81)
Q Consensus 1 lF~~~G~i~~v~i~~~~~~~~~kg~~~~~~~~~~~~~~~~fV~f~~~~~A~~Ai~~lng~~i~g~~i~V~~a~~~~~ 77 (81)
+|++||+|.++.|+.++ ++.++| ||||+|.+.++|++|+. |+..++|+.|.|.++.++..
T Consensus 29 ~F~~~G~i~~v~i~~~~-~g~~~g--------------~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v~~a~~~~~ 88 (102)
T 2xs2_A 29 FFARYGSVKEVKIITDR-TGVSKG--------------YGFVSFYNDVDVQKIVE--SQINFHGKKLKLGPAIRKQN 88 (102)
T ss_dssp HHGGGSCEEEEEEEECT-TSCEEE--------------EEEEEESSCCCHHHHTT--CCCEETTEECEEEEEEECC-
T ss_pred HHHhCCCeEEEEEEECC-CCCccc--------------eEEEEECCHHHHHHHHh--CCCeECCEEEEEEECCcCcc
Confidence 48999999999999998 999999 99999999999999999 99999999999999976654
No 119
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=7.5e-16 Score=89.92 Aligned_cols=60 Identities=15% Similarity=0.146 Sum_probs=55.8
Q ss_pred CccCCcee-eEEEEEecCCCCCcccccccccccccCcceEEEEEEcCHHHHHHHHHhhCCcEECCEEEEEEeeCCCC
Q psy16913 1 MFLPFGNV-ISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQIGMKRLKVQLKRPKD 76 (81)
Q Consensus 1 lF~~~G~i-~~v~i~~~~~~~~~kg~~~~~~~~~~~~~~~~fV~f~~~~~A~~Ai~~lng~~i~g~~i~V~~a~~~~ 76 (81)
+|++||.| .+|+|+.|+ +++++| ||||+|.+.++|++||+. |+..|.|+.|.|.++.++.
T Consensus 35 ~F~~~g~v~~~v~i~~d~-~g~~~G--------------~afV~F~~~~~a~~Al~~-~~~~~~gr~i~v~~a~~~~ 95 (114)
T 2cpy_A 35 FLEGIPVDENAVHVLVDN-NGQGLG--------------QALVQFKNEDDARKSERL-HRKKLNGREAFVHVVTLED 95 (114)
T ss_dssp HTTTSCCCSTTEEECCCT-TSSCSS--------------CEEEECSSHHHHHHHGGG-CSEEETTEEEEEEEECHHH
T ss_pred HHHhCCCcCCeEEEEECC-CCCcce--------------EEEEEECCHHHHHHHHHh-CCCccCCeEEEEEECCHHH
Confidence 58999999 899999998 999999 999999999999999996 9999999999999997654
No 120
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.58 E-value=4e-15 Score=92.24 Aligned_cols=64 Identities=19% Similarity=0.360 Sum_probs=55.3
Q ss_pred CccCCceeeEEEEEecCCCCCcccccccccccccCcceEEEEEEcCHHHHHHHHHhhCCcEECCEEEEEEeeCCCCCCC
Q psy16913 1 MFLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQIGMKRLKVQLKRPKDAAR 79 (81)
Q Consensus 1 lF~~~G~i~~v~i~~~~~~~~~kg~~~~~~~~~~~~~~~~fV~f~~~~~A~~Ai~~lng~~i~g~~i~V~~a~~~~~~~ 79 (81)
+|++||+|.++.++.++.++.++| ||||+|.+.++|.+|+.. +|..++|+.|.|.+|.++....
T Consensus 124 ~F~~~G~i~~v~i~~~~~~g~~~g--------------~afV~F~~~~~A~~A~~~-~~~~~~G~~i~v~~a~~k~~~~ 187 (196)
T 1l3k_A 124 YFEQYGKIEVIEIMTDRGSGKKRG--------------FAFVTFDDHDSVDKIVIQ-KYHTVNGHNCEVRKALSKQEMA 187 (196)
T ss_dssp HHTTTSCEEEEEEEECTTTCCEEE--------------EEEEEESSHHHHHHHHHC-SCCEETTEECEEEECC------
T ss_pred HHhcCCCeEEEEEeecCCCCCccc--------------eEEEEECCHHHHHHHHHh-CCcEECCEEEEEEecCChhHhc
Confidence 489999999999999998999999 999999999999999986 8999999999999999887643
No 121
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.58 E-value=6.1e-15 Score=82.81 Aligned_cols=57 Identities=26% Similarity=0.443 Sum_probs=51.7
Q ss_pred CccCCceeeEEEEEecCCCCCcccccccccccccCcceEEEEEEcCHHHHHHHHHhhCCcEECCEEEEEEeeCCCCCCC
Q psy16913 1 MFLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQIGMKRLKVQLKRPKDAAR 79 (81)
Q Consensus 1 lF~~~G~i~~v~i~~~~~~~~~kg~~~~~~~~~~~~~~~~fV~f~~~~~A~~Ai~~lng~~i~g~~i~V~~a~~~~~~~ 79 (81)
+|++||+|.++.++ ++ ||||+|.+.++|++|++.|||..+.|+.|.|+++.++....
T Consensus 30 ~F~~~G~v~~v~~~--------~~--------------~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~~~ 86 (92)
T 2dgt_A 30 KFEEYGPVIECDIV--------KD--------------YAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTA 86 (92)
T ss_dssp HHHTTSCCCEEEEC--------SS--------------EEEEEESCHHHHHHHHHHHTTEEETTEEEEEEESSCCCSCC
T ss_pred HHHhcCCeEEEEEE--------CC--------------EEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEccCCCCCC
Confidence 48899999999887 44 99999999999999999999999999999999998876554
No 122
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.58 E-value=3.5e-15 Score=104.22 Aligned_cols=63 Identities=16% Similarity=0.422 Sum_probs=59.5
Q ss_pred CccCCceeeEEEEEecCCCCCcccccccccccccCcceEEEEEEcCHHHHHHHHHhhCCcEECCEEEEEEeeCCCCC
Q psy16913 1 MFLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQIGMKRLKVQLKRPKDA 77 (81)
Q Consensus 1 lF~~~G~i~~v~i~~~~~~~~~kg~~~~~~~~~~~~~~~~fV~f~~~~~A~~Ai~~lng~~i~g~~i~V~~a~~~~~ 77 (81)
+|++||+|..|.|+.++.++.++| ||||+|.+.++|..||..|||..|.|+.|.|+++.++..
T Consensus 122 ~F~~~G~I~~v~i~~d~~tg~~kG--------------~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~a~~~~~ 184 (437)
T 3pgw_S 122 EFEVYGPIKRIHMVYSKRSGKPRG--------------YAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVERGRTV 184 (437)
T ss_pred HHHHcCCeeEEEeeccCCCCCccc--------------eEEEeeccHHHHHHHHHHcCCCEECCEEEEEEEeCCCCC
Confidence 589999999999999998999999 999999999999999999999999999999999987643
No 123
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=2.7e-15 Score=86.40 Aligned_cols=60 Identities=13% Similarity=0.187 Sum_probs=54.6
Q ss_pred CccCCceeeEEEEEecCCCCCcccccccccccccCcceEEEEEEcCHHHHHHHHHhhCCcEECCEEEEEEeeCCCCC
Q psy16913 1 MFLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQIGMKRLKVQLKRPKDA 77 (81)
Q Consensus 1 lF~~~G~i~~v~i~~~~~~~~~kg~~~~~~~~~~~~~~~~fV~f~~~~~A~~Ai~~lng~~i~g~~i~V~~a~~~~~ 77 (81)
+|++||. .+|+|++++ +++++| ||||+|.++++|++||+ +|+..+.|+.|.|.++.+...
T Consensus 35 ~F~~~G~-~~v~i~~d~-~g~~~G--------------~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~~~~~~~~ 94 (102)
T 1wez_A 35 FFSPLNP-MRVHIEIGP-DGRVTG--------------EADVEFATHEDAVAAMA-KDKANMQHRYVELFLNSTAGT 94 (102)
T ss_dssp SSCSCCC-SEEEEEESS-SSCEEE--------------EEEEECSSSHHHHHHHT-TSSCCSSSSCCEEEEECCCCC
T ss_pred HHHHcCc-eEEEEEECC-CCCEee--------------EEEEEECCHHHHHHHHH-hCCCeECCcEEEEEECCCCCC
Confidence 6999995 599999998 899999 99999999999999995 899999999999999977654
No 124
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.58 E-value=1.4e-15 Score=96.62 Aligned_cols=60 Identities=37% Similarity=0.625 Sum_probs=54.9
Q ss_pred CccCCceeeEEEEEecCCCCCcccccccccccccCcceEEEEEEcCHHHHHHHHHhhCCcEECCEEEEEEeeCCCC
Q psy16913 1 MFLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQIGMKRLKVQLKRPKD 76 (81)
Q Consensus 1 lF~~~G~i~~v~i~~~~~~~~~kg~~~~~~~~~~~~~~~~fV~f~~~~~A~~Ai~~lng~~i~g~~i~V~~a~~~~ 76 (81)
+|++||.|.+++|++|+ +.++| ||||+|.+.++|++|++.|||..|+|++|.|++|.++.
T Consensus 123 ~F~~~G~i~~~~i~~d~--~~~~g--------------~~fV~f~~~~~a~~Ai~~lng~~~~g~~i~V~~a~~~~ 182 (213)
T 4f02_A 123 TFSAFGNILSCKVVCDE--NGSKG--------------YGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRK 182 (213)
T ss_dssp HHGGGSCEEEEEEEEET--TEEEE--------------EEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCHH
T ss_pred HHhhcCCeEEEEeeccC--CCCce--------------EEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEcCCCc
Confidence 48999999999999985 34677 99999999999999999999999999999999998764
No 125
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.58 E-value=5.9e-16 Score=88.22 Aligned_cols=58 Identities=24% Similarity=0.425 Sum_probs=53.5
Q ss_pred CccCCceeeEEEEEecCCCCCcccccccccccccCcceEEEEEEcCHHHHHHHHHhhCCcEECCEEEEEEeeCCCCC
Q psy16913 1 MFLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQIGMKRLKVQLKRPKDA 77 (81)
Q Consensus 1 lF~~~G~i~~v~i~~~~~~~~~kg~~~~~~~~~~~~~~~~fV~f~~~~~A~~Ai~~lng~~i~g~~i~V~~a~~~~~ 77 (81)
+|++||+|.++.++.+ ++| ||||+|.+.++|++|++.|||..+.|+.|.|+++.++..
T Consensus 20 ~F~~~G~i~~v~i~~~-----~~g--------------~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~ 77 (101)
T 2hvz_A 20 AFSYYGPLRTVWIARN-----PPG--------------FAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGMPR 77 (101)
T ss_dssp HHHHHCCCSEEEEESS-----SSS--------------EEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSCCC
T ss_pred HHHhcCCeEEEEEeeC-----CCC--------------EEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCCCC
Confidence 4889999999999987 678 999999999999999999999999999999999987654
No 126
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.57 E-value=2.5e-15 Score=85.15 Aligned_cols=58 Identities=22% Similarity=0.507 Sum_probs=52.7
Q ss_pred CccCCceeeEEEEEecCCCCCcccccccccccccCcceEEEEEEcCHHHHHHHHHhhCCcEEC--CEEEEEEeeCCCCCC
Q psy16913 1 MFLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQIG--MKRLKVQLKRPKDAA 78 (81)
Q Consensus 1 lF~~~G~i~~v~i~~~~~~~~~kg~~~~~~~~~~~~~~~~fV~f~~~~~A~~Ai~~lng~~i~--g~~i~V~~a~~~~~~ 78 (81)
+|++||+|.++.++.+ +| ||||+|.+.++|++|++.|||..+. |+.|.|++++++..+
T Consensus 37 ~F~~~G~v~~v~~~~~------~g--------------~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~~a~~~~~~ 96 (97)
T 1why_A 37 EFDRFGSIRTIDHVKG------DS--------------FAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVDFAKSGPSS 96 (97)
T ss_dssp HHHTTSCEEEEEECSS------SC--------------CEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEEECCCCCCC
T ss_pred HHHhcCCeeEEEEeCC------CC--------------EEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEEECCCCCCC
Confidence 4899999999988754 67 9999999999999999999999999 999999999987653
No 127
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.57 E-value=4e-15 Score=86.08 Aligned_cols=56 Identities=20% Similarity=0.191 Sum_probs=50.5
Q ss_pred CccCCceeeEEEEEecCCCCCcccccccccccccCcceEEEEEEcCHHHHHHHHHhhCCcE--ECCEEEEEEeeCCCC
Q psy16913 1 MFLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQ--IGMKRLKVQLKRPKD 76 (81)
Q Consensus 1 lF~~~G~i~~v~i~~~~~~~~~kg~~~~~~~~~~~~~~~~fV~f~~~~~A~~Ai~~lng~~--i~g~~i~V~~a~~~~ 76 (81)
+|++||+|.++.+++ +|| ||||+|.+.++|.+|++.||+.. +.|++|+|++++++.
T Consensus 41 lF~~fG~V~~v~i~~------~kg--------------~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V~~S~~k~ 98 (100)
T 3r27_A 41 ALQEFGPISYVVVMP------KKR--------------QALVEFEDVLGACNAVNYAADNQIYIAGHPAFVNYSTSQK 98 (100)
T ss_dssp HHGGGSCEEEEEEET------TTT--------------EEEEEESSHHHHHHHHHHHHHSCEEETTEEEEEEECSCSC
T ss_pred HHhccCCEEEEEEEc------CCC--------------EEEEEECCHHHHHHHHHHhcCCCceeCCcEEEEEeccccc
Confidence 589999999999885 367 99999999999999999999875 789999999998864
No 128
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=4.1e-15 Score=85.52 Aligned_cols=61 Identities=18% Similarity=0.237 Sum_probs=55.7
Q ss_pred CccCCceeeE-EEEEecCCCCCcccccccccccccCcceEEEEEEcCHHHHHHHHHhhCCcEECCEEEEEEeeCCCCC
Q psy16913 1 MFLPFGNVIS-SKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQIGMKRLKVQLKRPKDA 77 (81)
Q Consensus 1 lF~~~G~i~~-v~i~~~~~~~~~kg~~~~~~~~~~~~~~~~fV~f~~~~~A~~Ai~~lng~~i~g~~i~V~~a~~~~~ 77 (81)
+|++||.|.+ +.|+.+ .+|+++| ||||+|.++++|++|++. |+..+.|+.|.|.++.++..
T Consensus 35 ~F~~~G~v~~~v~i~~~-~~g~~~G--------------~afV~F~~~~~a~~A~~~-~~~~~~gr~i~v~~~~~~~~ 96 (104)
T 1wg5_A 35 FFSGLEIVPNGMTLPVD-FQGRSTG--------------EAFVQFASQEIAEKALKK-HKERIGHRYIEIFKSSRAEV 96 (104)
T ss_dssp HTTTCCEEEEEEECCBC-SSSCBCS--------------EEEEEESSHHHHHHHHTT-TTCCSSSSCCEEEEECTTTS
T ss_pred HHHhcCCcceeEEEEEC-CCCCcce--------------EEEEEECCHHHHHHHHHh-CcchhCCcEEEEEECCHHHH
Confidence 4899999998 888888 6899999 999999999999999997 99999999999999977653
No 129
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.57 E-value=2.8e-15 Score=84.63 Aligned_cols=60 Identities=17% Similarity=0.267 Sum_probs=52.6
Q ss_pred CccCCceeeEEEEEecCCCCCcccccccccccccCcceEEEEEEcCHHHHHHHHHhhCCcEECCEEEEEEeeCCCCCCC
Q psy16913 1 MFLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQIGMKRLKVQLKRPKDAAR 79 (81)
Q Consensus 1 lF~~~G~i~~v~i~~~~~~~~~kg~~~~~~~~~~~~~~~~fV~f~~~~~A~~Ai~~lng~~i~g~~i~V~~a~~~~~~~ 79 (81)
+|++||.|..+ ..++.++| ||||+|.+.++|++|+..|||..+.|+.|.|+++.++..++
T Consensus 36 ~F~~~g~v~~~-----~~~~~~~g--------------~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~~ 95 (96)
T 1fjc_A 36 VFEDALEIRLV-----SQDGKSKG--------------IAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEKGGTR 95 (96)
T ss_dssp HHCSEEEECCE-----EETTEEEE--------------EEEEEESSHHHHHHHHHHTTEEEETTEEEEEEECSSSCCCC
T ss_pred HHhhCCcEEEe-----CCCCCcce--------------EEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEcCCCCCCC
Confidence 47889988765 34678888 99999999999999999999999999999999998877654
No 130
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.56 E-value=9.4e-15 Score=92.78 Aligned_cols=62 Identities=29% Similarity=0.413 Sum_probs=58.4
Q ss_pred CccCCceeeEEEEEecCCCCCcccccccccccccCcceEEEEEEcCHHHHHHHHHhhCCcEECCEEEEEEeeCCCC
Q psy16913 1 MFLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQIGMKRLKVQLKRPKD 76 (81)
Q Consensus 1 lF~~~G~i~~v~i~~~~~~~~~kg~~~~~~~~~~~~~~~~fV~f~~~~~A~~Ai~~lng~~i~g~~i~V~~a~~~~ 76 (81)
+|++||+|.+|+|++|+.+++++| ||||+|.+.++|++|++.+|+..+.|+.|++.++.+..
T Consensus 35 ~F~~~G~I~~v~i~~d~~tg~~~G--------------~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~~~~~~ 96 (213)
T 4f02_A 35 KFSPAGPILSIRVCRDMITRRSLG--------------YAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQRDP 96 (213)
T ss_dssp HHGGGSCEEEEEEEECTTTCCEEE--------------EEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCT
T ss_pred HHHhhCCEEEEEEecccCCCCccc--------------cccceeCCHHHHHHHHHHhhhhhcCCcccccccccccc
Confidence 589999999999999999999999 99999999999999999999999999999999987653
No 131
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.56 E-value=2.4e-15 Score=87.19 Aligned_cols=59 Identities=19% Similarity=0.187 Sum_probs=51.5
Q ss_pred CccCCceeeEEEEEecCCCCCcccccccccccccCcceEEEEEEcCHHHHHHHHHhhCCc--EECCEEEEEEeeCCCCCC
Q psy16913 1 MFLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGF--QIGMKRLKVQLKRPKDAA 78 (81)
Q Consensus 1 lF~~~G~i~~v~i~~~~~~~~~kg~~~~~~~~~~~~~~~~fV~f~~~~~A~~Ai~~lng~--~i~g~~i~V~~a~~~~~~ 78 (81)
+|++||+|.++.|+.+ +| ||||+|.+.++|++|++.||+. .+.|++|.|+++.++...
T Consensus 35 ~F~~fG~V~~v~i~~~------kg--------------~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~~a~~~~~~ 94 (104)
T 1wex_A 35 ALEKFGTICYVMMMPF------KR--------------QALVEFENIDSAKECVTFAADVPVYIAGQQAFFNYSTSKRIT 94 (104)
T ss_dssp HHTTTSCEEEEEEETT------TT--------------EEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEEECSSSSCC
T ss_pred HHHhCCCEEEEEEECC------CC--------------EEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEccCcccc
Confidence 5899999999998864 67 9999999999999999988764 489999999999887654
Q ss_pred C
Q psy16913 79 R 79 (81)
Q Consensus 79 ~ 79 (81)
+
T Consensus 95 ~ 95 (104)
T 1wex_A 95 R 95 (104)
T ss_dssp C
T ss_pred C
Confidence 4
No 132
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.56 E-value=3.6e-16 Score=84.69 Aligned_cols=57 Identities=21% Similarity=0.452 Sum_probs=53.3
Q ss_pred CccCCceeeEEEEEecCCCCCcccccccccccccCcceEEEEEEcCHHHHHHHHHhhCCcEECCEEEEEEee
Q psy16913 1 MFLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQIGMKRLKVQLK 72 (81)
Q Consensus 1 lF~~~G~i~~v~i~~~~~~~~~kg~~~~~~~~~~~~~~~~fV~f~~~~~A~~Ai~~lng~~i~g~~i~V~~a 72 (81)
+|++||+|.++.++.++.++.++| ||||+|.++++|++|++ +++..+.|+.|.|++|
T Consensus 19 ~F~~~G~i~~v~i~~~~~~~~~~g--------------~afV~f~~~~~a~~Ai~-~~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 19 YFGGFGEVESIELPMDNKTNKRRG--------------FCFITFKEEEPVKKIME-KKYHNVGLSKCEIKVA 75 (75)
T ss_dssp HHHHHSCCSEECCCCSCCCSSSCC--------------CEEEECSSSHHHHHHHT-TSSCCBTTBCCCEEEC
T ss_pred HHHhcCCeEEEEEEecCCCCCcCC--------------EEEEEECCHHHHHHHHH-hCCCeECCEEEEEEEC
Confidence 488999999999999998999999 99999999999999999 4899999999999875
No 133
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.56 E-value=7.9e-15 Score=82.04 Aligned_cols=57 Identities=32% Similarity=0.487 Sum_probs=51.4
Q ss_pred CccCCceeeEEEEEecCCCCCcccccccccccccCcceEEEEEEcCHHHHHHHHHhhCCcEECCEEEEEEeeCCCCCCC
Q psy16913 1 MFLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQIGMKRLKVQLKRPKDAAR 79 (81)
Q Consensus 1 lF~~~G~i~~v~i~~~~~~~~~kg~~~~~~~~~~~~~~~~fV~f~~~~~A~~Ai~~lng~~i~g~~i~V~~a~~~~~~~ 79 (81)
+|++||+|.++.++ ++ ||||+|.+.++|++|++.|||..+.|+.|.|+++.++..+.
T Consensus 29 ~F~~~G~v~~~~~~--------~~--------------~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~~ 85 (90)
T 2dnp_A 29 LFERRGRVIECDVV--------KD--------------YAFVHMEKEADAKAAIAQLNGKEVKGKRINVELSTKGQKKS 85 (90)
T ss_dssp HHHHHSCEEEEEEC--------SS--------------CEEEEESCHHHHHHHHHHHTTCEETTEECEEEESCCCCCCC
T ss_pred HHHcCCCEEEEEEE--------CC--------------EEEEEECCHHHHHHHHHHhCCCEECCcEEEEEECCCCCCCC
Confidence 48899999999987 34 99999999999999999999999999999999998876543
No 134
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.56 E-value=1.9e-15 Score=94.57 Aligned_cols=62 Identities=24% Similarity=0.348 Sum_probs=58.0
Q ss_pred CccCCceeeEEEEEecCCCCCcccccccccccccCcceEEEEEEcCHHHHHHHHHhhCCcEECCEEEEEEeeCCCCC
Q psy16913 1 MFLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQIGMKRLKVQLKRPKDA 77 (81)
Q Consensus 1 lF~~~G~i~~v~i~~~~~~~~~kg~~~~~~~~~~~~~~~~fV~f~~~~~A~~Ai~~lng~~i~g~~i~V~~a~~~~~ 77 (81)
+|++||+|.+|.|+.++ ++.++| ||||+|.+.++|++|++.|||..++|+.|.|++|.+...
T Consensus 108 ~F~~~G~I~~v~i~~d~-~g~~kG--------------~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~a~~~~~ 169 (177)
T 2f3j_A 108 LFAEFGTLKKAAVDYDR-SGRSLG--------------TADVHFERRADALKAMKQYKGVPLDGRPMDIQLVASQID 169 (177)
T ss_dssp HHHHTSCCSEEEECCCT-TSSCSC--------------CEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEEESSGGG
T ss_pred HHHhcCCeEEEEEEECC-CCCEee--------------EEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEecCCCC
Confidence 58899999999999998 899999 999999999999999999999999999999999977543
No 135
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.56 E-value=5.2e-15 Score=85.57 Aligned_cols=57 Identities=25% Similarity=0.453 Sum_probs=51.1
Q ss_pred CccCCceeeEEEEEecCCCCCcccccccccccccCcceEEEEEEcCHHHHHHHHHhhCCcEECCEEEEEEeeCCCCCCC
Q psy16913 1 MFLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQIGMKRLKVQLKRPKDAAR 79 (81)
Q Consensus 1 lF~~~G~i~~v~i~~~~~~~~~kg~~~~~~~~~~~~~~~~fV~f~~~~~A~~Ai~~lng~~i~g~~i~V~~a~~~~~~~ 79 (81)
+|++||+|.++.+ ++| ||||+|.+.++|++|++.|||..++|+.|.|+++.++...+
T Consensus 48 ~F~~~G~v~~v~i--------~~g--------------~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~~~~ 104 (110)
T 1wf1_A 48 IFSKYGRVAGCSV--------HKG--------------YAFVQYSNERHARAAVLGENGRVLAGQTLDINMAGEPKPDR 104 (110)
T ss_dssp HHGGGSCCSEEEE--------ETT--------------EEEEECSSSHHHHHHHHHHTTCEETTEECCEEESCCCCSCC
T ss_pred HHHhCCCeEEEEE--------eCC--------------EEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECCCCCCCC
Confidence 4899999999988 467 99999999999999999999999999999999998655443
No 136
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.56 E-value=2.5e-15 Score=88.40 Aligned_cols=59 Identities=12% Similarity=0.171 Sum_probs=54.5
Q ss_pred CccCCce---eeEEEEEecCCCCCcccccccccccccCcceEEEEEEcCHHHHHHHHHhhCCcEECCEEEEEEeeCCC
Q psy16913 1 MFLPFGN---VISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQIGMKRLKVQLKRPK 75 (81)
Q Consensus 1 lF~~~G~---i~~v~i~~~~~~~~~kg~~~~~~~~~~~~~~~~fV~f~~~~~A~~Ai~~lng~~i~g~~i~V~~a~~~ 75 (81)
+|+.||. |.+|+|+.++. |+++| ||||+|.+.++|++|++ |||..|.|+.|+|.++.++
T Consensus 37 ~F~~~G~~~~v~~v~i~~~~~-g~~~G--------------~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~~a~~~ 98 (118)
T 2db1_A 37 FLSDCTIHDGVAGVHFIYTRE-GRQSG--------------EAFVELESEDDVKLALK-KDRESMGHRYIEVFKSHRT 98 (118)
T ss_dssp HTTTSCBTTGGGGEEEEECSS-SCEEE--------------EEEEEBSSHHHHHHHGG-GTTEEETTEEEEEEEECHH
T ss_pred HHHHcCCccCceeEEEEECCC-CCCCe--------------EEEEEECCHHHHHHHHh-cCCCeECCeEEEEEECCHH
Confidence 4899999 89999999985 88899 99999999999999999 9999999999999998654
No 137
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.55 E-value=3.8e-16 Score=92.29 Aligned_cols=61 Identities=21% Similarity=0.216 Sum_probs=55.5
Q ss_pred CccCCceeeEEEEEecCCCCCcccccccccccccCcceEEEEEEcCHHHHHHHHHhhCCcEECCEEEEEEeeCCCC
Q psy16913 1 MFLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQIGMKRLKVQLKRPKD 76 (81)
Q Consensus 1 lF~~~G~i~~v~i~~~~~~~~~kg~~~~~~~~~~~~~~~~fV~f~~~~~A~~Ai~~lng~~i~g~~i~V~~a~~~~ 76 (81)
+|++||.|.++.++.++.+|+++| ||||+|.+.++|++||. |||..|.|+.|.|.++.++.
T Consensus 45 ~F~~~G~v~~~~~~~~~~~g~~~G--------------~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~~a~~~~ 105 (124)
T 1wel_A 45 FFKKLDIVEDSIYIAYGPNGKATG--------------EGFVEFRNEADYKAALC-RHKQYMGNRFIQVHPITKKG 105 (124)
T ss_dssp HSCSSCBCTTTCEEEECTTSSEEE--------------EEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEEEECHHH
T ss_pred HHHhcCCccceEEEEECCCCCCCe--------------EEEEEECCHHHHHHHHH-hCCCeECCcEEEEEECCHHH
Confidence 589999999877777777999999 99999999999999999 99999999999999997643
No 138
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.55 E-value=8e-15 Score=85.08 Aligned_cols=56 Identities=29% Similarity=0.501 Sum_probs=50.9
Q ss_pred CccCCceeeEEEEEecCCCCCcccccccccccccCcceEEEEEEcCHHHHHHHHHhhCCcEECCEEEEEEeeCCCCCC
Q psy16913 1 MFLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQIGMKRLKVQLKRPKDAA 78 (81)
Q Consensus 1 lF~~~G~i~~v~i~~~~~~~~~kg~~~~~~~~~~~~~~~~fV~f~~~~~A~~Ai~~lng~~i~g~~i~V~~a~~~~~~ 78 (81)
+|++||+|.++.++ +| ||||+|.+.++|++|++.|||..+.|+.|.|+++.++..+
T Consensus 51 ~F~~~G~i~~v~i~--------kg--------------~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~r 106 (108)
T 2jvo_A 51 IFGPFGPMKEVKIL--------NG--------------FAFVEFEEAESAAKAIEEVHGKSFANQPLEVVYSKLPAKR 106 (108)
T ss_dssp HHTTTSCCCEEEEE--------TT--------------EEEEECSSHHHHHHHHHHHTTCEETTEECEEESCSCCC--
T ss_pred HHHhcCCEEEEEEE--------CC--------------EEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEecCCCCC
Confidence 48999999999988 67 9999999999999999999999999999999999887654
No 139
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.55 E-value=3.3e-15 Score=85.09 Aligned_cols=55 Identities=22% Similarity=0.430 Sum_probs=50.6
Q ss_pred CccCCceeeEEEEEecCCCCCcccccccccccccCcceEEEEEEcCHHHHHHHHHhhCCcEECCEEEEEEeeCCC
Q psy16913 1 MFLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQIGMKRLKVQLKRPK 75 (81)
Q Consensus 1 lF~~~G~i~~v~i~~~~~~~~~kg~~~~~~~~~~~~~~~~fV~f~~~~~A~~Ai~~lng~~i~g~~i~V~~a~~~ 75 (81)
+|++||+|.+++++ .++| ||||+|.+.++|++|+..|||..++|+.|+|++++++
T Consensus 47 ~f~~~G~i~~~~~~------~~~g--------------~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 101 (101)
T 2la4_A 47 LFQNFGFILDFKHY------PEKG--------------CCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWGKER 101 (101)
T ss_dssp HHHTTSCCSEEEEE------TTTT--------------EEEEECSSHHHHHHHHHHHTTCEETTEECCCCBCCCC
T ss_pred HHHhCCCEEEEEEe------cCCC--------------EEEEEECCHHHHHHHHHHhCCCeECCeEEEEEeccCC
Confidence 48899999999987 3467 9999999999999999999999999999999999875
No 140
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.55 E-value=9.5e-15 Score=83.60 Aligned_cols=56 Identities=27% Similarity=0.522 Sum_probs=50.8
Q ss_pred CccCCceeeEEEEEecCCCCCcccccccccccccCcceEEEEEEcCHHHHHHHHHhhCCcEECCEEEEEEeeCCCCCC
Q psy16913 1 MFLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQIGMKRLKVQLKRPKDAA 78 (81)
Q Consensus 1 lF~~~G~i~~v~i~~~~~~~~~kg~~~~~~~~~~~~~~~~fV~f~~~~~A~~Ai~~lng~~i~g~~i~V~~a~~~~~~ 78 (81)
+|++||+|.++.++ ++ ||||+|.+.++|++|++.|||..+.|+.|.|+++.++...
T Consensus 31 ~F~~~G~i~~v~~~--------~~--------------~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~ 86 (103)
T 2dgu_A 31 AFSQFGKLERVKKL--------KD--------------YAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKPPDQK 86 (103)
T ss_dssp HHHHHSCEEEEEEC--------SS--------------CEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCCCCCC
T ss_pred HHHhcCCEEEEEEE--------CC--------------EEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEcCCCccc
Confidence 48899999999876 45 9999999999999999999999999999999999877653
No 141
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.55 E-value=2e-15 Score=87.75 Aligned_cols=59 Identities=17% Similarity=0.336 Sum_probs=53.2
Q ss_pred CccCCceeeEEEEEecCCCCCcccccccccccccCcceEEEEEEcCHHHHHHHHHhhCCcEECCEEEEEEeeCCCC
Q psy16913 1 MFLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQIGMKRLKVQLKRPKD 76 (81)
Q Consensus 1 lF~~~G~i~~v~i~~~~~~~~~kg~~~~~~~~~~~~~~~~fV~f~~~~~A~~Ai~~lng~~i~g~~i~V~~a~~~~ 76 (81)
+|++||+|.++.++.+ +.++| ||||+|.+.++|.+|++.|||..+.|+.|.|+++.++.
T Consensus 28 ~F~~~G~v~~v~i~~~---~~~~g--------------~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~ 86 (115)
T 3lqv_A 28 IFGKYGPIRQIRVGNT---PETRG--------------TAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYYNANR 86 (115)
T ss_dssp HHHTTSCEEEEEEECS---TTTTT--------------CEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEECCHHH
T ss_pred HHHhcCCeEEEEEeeC---CCCCc--------------EEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEecCCh
Confidence 4899999999999865 34578 99999999999999999999999999999999998643
No 142
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.55 E-value=6.5e-15 Score=83.67 Aligned_cols=57 Identities=21% Similarity=0.382 Sum_probs=52.3
Q ss_pred CccCCceeeEEEEEecCCCCCcccccccccccccCcceEEEEEEcCHHHHHHHHHhhCCcEECCEEEEEEeeCCCCC
Q psy16913 1 MFLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQIGMKRLKVQLKRPKDA 77 (81)
Q Consensus 1 lF~~~G~i~~v~i~~~~~~~~~kg~~~~~~~~~~~~~~~~fV~f~~~~~A~~Ai~~lng~~i~g~~i~V~~a~~~~~ 77 (81)
+|++||+|.++.++.+ +| ||||+|.+.++|++|++.|||..+.|+.|.|+++.++..
T Consensus 35 ~F~~~G~i~~v~~~~~------kg--------------~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~~~ 91 (99)
T 2cpj_A 35 LFEKYGKAGEVFIHKD------KG--------------FGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFACHSAS 91 (99)
T ss_dssp HTSTTCCCSEEEEETT------TT--------------EEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEESSCCSC
T ss_pred HHhhcCCeEEEEEecC------CC--------------EEEEEECCHHHHHHHHHHhCCCEeCCceEEEEEcCCCCC
Confidence 5899999999998854 57 999999999999999999999999999999999988764
No 143
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.55 E-value=5.4e-15 Score=87.82 Aligned_cols=59 Identities=19% Similarity=0.298 Sum_probs=52.6
Q ss_pred CccCCceeeEEEEEecCCCCCcccccccccccccCcceEEEEEEcCHHHHHHHHHhhCC--cEECCEEEEEEeeCCCCCC
Q psy16913 1 MFLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNG--FQIGMKRLKVQLKRPKDAA 78 (81)
Q Consensus 1 lF~~~G~i~~v~i~~~~~~~~~kg~~~~~~~~~~~~~~~~fV~f~~~~~A~~Ai~~lng--~~i~g~~i~V~~a~~~~~~ 78 (81)
+|++||+|.+|.|+.+ +| ||||+|.+.++|++|++.|++ ..+.|++|+|++|.++...
T Consensus 51 lF~~fG~V~~v~i~~~------kG--------------~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V~~a~~k~~~ 110 (119)
T 2ad9_A 51 LGLPFGKVTNLLMLKG------KN--------------QAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSNHKELK 110 (119)
T ss_dssp HHTTTSCCCEEEEEGG------GT--------------EEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEEEECSSSSCC
T ss_pred HHHhcCCEEEEEEeCC------CC--------------EEEEEECCHHHHHHHHHHhccCCceECCeEEEEEEccCCCCC
Confidence 5899999999999875 57 999999999999999999884 6899999999999887654
Q ss_pred C
Q psy16913 79 R 79 (81)
Q Consensus 79 ~ 79 (81)
.
T Consensus 111 ~ 111 (119)
T 2ad9_A 111 T 111 (119)
T ss_dssp C
T ss_pred c
Confidence 3
No 144
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.54 E-value=2.3e-14 Score=81.56 Aligned_cols=54 Identities=28% Similarity=0.534 Sum_probs=49.8
Q ss_pred CccCCceeeEEEEEecCCCCCcccccccccccccCcceEEEEEEcCHHHHHHHHHhhCCcEECCEEEEEEeeCCCC
Q psy16913 1 MFLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQIGMKRLKVQLKRPKD 76 (81)
Q Consensus 1 lF~~~G~i~~v~i~~~~~~~~~kg~~~~~~~~~~~~~~~~fV~f~~~~~A~~Ai~~lng~~i~g~~i~V~~a~~~~ 76 (81)
+|++||+|.++.+. +| ||||+|.+.++|++|++.|||..+.|+.|.|++++++.
T Consensus 43 ~F~~~G~v~~v~i~--------~g--------------~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~ 96 (97)
T 2xnq_A 43 IFSPYGHIMQINIK--------NA--------------FGFIQFDNPQSVRDAIEXESQEMNFGKKLILEVSSSNA 96 (97)
T ss_dssp HHGGGSCEEEEEEC--------SS--------------EEEEEESSHHHHHHHHHHHTTSEETTEECEEEECCCCC
T ss_pred HHHhcCCEEEEEEe--------CC--------------EEEEEECCHHHHHHHHHHcCCCEECCEEEEEEecCCCC
Confidence 48999999999883 67 99999999999999999999999999999999998764
No 145
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.54 E-value=5.2e-15 Score=87.58 Aligned_cols=58 Identities=31% Similarity=0.531 Sum_probs=52.2
Q ss_pred CccCCceeeEEEEEecCCCCCcccccccccccccCcceEEEEEEcCHHHHHHHHHhhCCcEECCEEEEEEeeCCCCCC
Q psy16913 1 MFLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQIGMKRLKVQLKRPKDAA 78 (81)
Q Consensus 1 lF~~~G~i~~v~i~~~~~~~~~kg~~~~~~~~~~~~~~~~fV~f~~~~~A~~Ai~~lng~~i~g~~i~V~~a~~~~~~ 78 (81)
+|++||+|.+|.|+ .++| ||||+|.+.++|++|++.|||..+.|+.|.|+++.++...
T Consensus 57 ~F~~~G~I~~v~i~------~~kg--------------~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a~~~~~~ 114 (121)
T 2bz2_A 57 AFSPFGNIIDLSMD------PPRN--------------CAFVTYEKMESADQAVAELNGTQVESVQLKVNIARKQPML 114 (121)
T ss_dssp HHSTTCCCSCEEEE------TTTT--------------EEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEECCSSCC-
T ss_pred HHHccCCEEEEEEe------CCCC--------------EEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEeCCCCCC
Confidence 48999999999986 4577 9999999999999999999999999999999999887654
No 146
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.54 E-value=8.2e-15 Score=91.26 Aligned_cols=58 Identities=21% Similarity=0.417 Sum_probs=51.6
Q ss_pred CccCCceeeEEEEEecCCCCCcccccccccccccCcceEEEEEEcCHHHHHHHHHhhCCcEECC--EEEEEEeeCCCC
Q psy16913 1 MFLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQIGM--KRLKVQLKRPKD 76 (81)
Q Consensus 1 lF~~~G~i~~v~i~~~~~~~~~kg~~~~~~~~~~~~~~~~fV~f~~~~~A~~Ai~~lng~~i~g--~~i~V~~a~~~~ 76 (81)
+|++||+|.+|.|..++ ++| ||||+|.+.++|++|++.|||..|.| +.|+|+|++++.
T Consensus 66 ~Fs~fG~V~~V~i~~k~----~rg--------------fAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~Ak~~~ 125 (164)
T 1sjr_A 66 IFSKFGTVLKIITFTKN----NQF--------------QALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKLTS 125 (164)
T ss_dssp HHHHHSCEEEEEEEESS----SCE--------------EEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEECSSSS
T ss_pred HHHhcCCEEEEEEEeCC----CCC--------------EEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEEecCCc
Confidence 58999999999986432 467 99999999999999999999999976 999999998874
No 147
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.54 E-value=3e-14 Score=85.90 Aligned_cols=62 Identities=26% Similarity=0.425 Sum_probs=55.9
Q ss_pred CccCCceeeEEEEEecCCCCCcccccccccccccCcceEEEEEEcCHHHHHHHHHhhCCcEECCEEEEEEeeCCCCC
Q psy16913 1 MFLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQIGMKRLKVQLKRPKDA 77 (81)
Q Consensus 1 lF~~~G~i~~v~i~~~~~~~~~kg~~~~~~~~~~~~~~~~fV~f~~~~~A~~Ai~~lng~~i~g~~i~V~~a~~~~~ 77 (81)
+|++||+|.++.++.++ ++.++| ||||+|.+.++|++|++.|||..+.|+.|.|.++.++..
T Consensus 20 ~f~~~G~i~~v~i~~~~-~~~~~g--------------~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~~~ 81 (166)
T 3md3_A 20 YFQVGGPIANIKIMIDK-NNKNVN--------------YAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQSQQ 81 (166)
T ss_dssp HHGGGSCEEEEEEECCC-C-CCEE--------------EEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCCC
T ss_pred HHHhcCCeEEEEEEECC-CCCCCC--------------EEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCCCC
Confidence 48999999999999997 567888 999999999999999999999999999999999977653
No 148
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.54 E-value=9.5e-15 Score=88.52 Aligned_cols=58 Identities=24% Similarity=0.466 Sum_probs=55.0
Q ss_pred CccCCceeeEEEEEecCCCCCcccccccccccccCcceEEEEEEcCHHHHHHHHHhhCCcEECC--EEEEEEee
Q psy16913 1 MFLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQIGM--KRLKVQLK 72 (81)
Q Consensus 1 lF~~~G~i~~v~i~~~~~~~~~kg~~~~~~~~~~~~~~~~fV~f~~~~~A~~Ai~~lng~~i~g--~~i~V~~a 72 (81)
+|++||+|.++.++.++.++.++| ||||+|.+.++|.+|++.|||..+.| ++|.|++|
T Consensus 109 ~f~~~G~i~~~~i~~~~~~~~~~g--------------~afV~f~~~~~A~~A~~~l~g~~~~g~~~~l~V~~A 168 (168)
T 1b7f_A 109 IFGKYGSIVQKNILRDKLTGRPRG--------------VAFVRYNKREEAQEAISALNNVIPEGGSQPLSVRLA 168 (168)
T ss_dssp HHTSSSCEEEEEEEECTTTCCEEE--------------EEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEEEC
T ss_pred hhhcCCcEEEEEEEEcCCCCCcce--------------EEEEEECCHHHHHHHHHHhcCCEecCCCeEEEEEeC
Confidence 489999999999999998899999 99999999999999999999999988 99999986
No 149
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.54 E-value=1.8e-15 Score=91.51 Aligned_cols=59 Identities=10% Similarity=0.142 Sum_probs=54.9
Q ss_pred CccCCce---eeEEEEEecCCCCCcccccccccccccCcceEEEEEEcCHHHHHHHHHhhCCcEECCEEEEEEeeCCC
Q psy16913 1 MFLPFGN---VISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQIGMKRLKVQLKRPK 75 (81)
Q Consensus 1 lF~~~G~---i~~v~i~~~~~~~~~kg~~~~~~~~~~~~~~~~fV~f~~~~~A~~Ai~~lng~~i~g~~i~V~~a~~~ 75 (81)
+|++||. |.+|+|++|+. |+++| ||||+|.++++|++|++ |||..+.|+.|.|.++.++
T Consensus 64 ~F~~~G~v~~v~~v~i~~d~~-g~srG--------------~aFV~F~~~e~a~~Al~-~~g~~l~gr~i~V~~a~~~ 125 (136)
T 2hgl_A 64 FLSDCTIHDGAAGVHFIYTRE-GRQSG--------------EAFVELGSEDDVKMALK-KDRESMGHRYIEVFKSHRT 125 (136)
T ss_dssp HTTTCCCSSSSTTEEEEECSS-SCEEE--------------EEEEECSSHHHHHHHHT-TTEEESSSSEEEEEECCHH
T ss_pred HHHHhCCcCceeEEEEEECCC-CCCCe--------------EEEEEECCHHHHHHHHh-cCCCEECCEEEEEEECChH
Confidence 4899999 89999999986 89999 99999999999999999 9999999999999998654
No 150
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.53 E-value=3.9e-15 Score=84.41 Aligned_cols=58 Identities=21% Similarity=0.437 Sum_probs=51.4
Q ss_pred CccCCceeeEEEEEecCCCCCcccccccccccccCcceEEEEEEcCHHHHHHHHHhhCCcEECCEEEEEEeeCCCCC
Q psy16913 1 MFLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQIGMKRLKVQLKRPKDA 77 (81)
Q Consensus 1 lF~~~G~i~~v~i~~~~~~~~~kg~~~~~~~~~~~~~~~~fV~f~~~~~A~~Ai~~lng~~i~g~~i~V~~a~~~~~ 77 (81)
+|++||+|. +.++.+ .++| ||||+|.+.++|++|++.|||..+.|+.|.|+++.++..
T Consensus 39 ~F~~~G~v~-~~~~~~----~~~g--------------~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~ 96 (97)
T 2e5j_A 39 ALRELGSVP-LRLTWQ----GPRR--------------RAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVALARQQRD 96 (97)
T ss_dssp HHHHTTCCC-SEEEEE----TTTT--------------EEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEECCCCCC
T ss_pred HHHhcCCEE-EEEEcC----CCCc--------------EEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCCCCC
Confidence 488999997 676654 5678 999999999999999999999999999999999988764
No 151
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.53 E-value=5e-15 Score=89.73 Aligned_cols=57 Identities=26% Similarity=0.429 Sum_probs=53.0
Q ss_pred CccCCceeeEEEEEecCCCCCcccccccccccccCcceEEEEEEcCHHHHHHHHHhhCCcEECCEEEEEEeeCCCC
Q psy16913 1 MFLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQIGMKRLKVQLKRPKD 76 (81)
Q Consensus 1 lF~~~G~i~~v~i~~~~~~~~~kg~~~~~~~~~~~~~~~~fV~f~~~~~A~~Ai~~lng~~i~g~~i~V~~a~~~~ 76 (81)
+|++||+|.+++++.+ ++| ||||+|.+.++|++|+..|||..+.|++|+|+++.++.
T Consensus 93 ~F~~~G~i~~v~i~~~-----~~g--------------~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 149 (150)
T 2i2y_A 93 AFGYYGPLRSVWVARN-----PPG--------------FAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSNGEK 149 (150)
T ss_dssp HHHHHSCEEEEEECSS-----SCS--------------EEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEECCCCC
T ss_pred HHHhhCCEEEEEEeeC-----CCc--------------EEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcCCCC
Confidence 4889999999999876 478 99999999999999999999999999999999998864
No 152
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.53 E-value=8.4e-15 Score=86.48 Aligned_cols=60 Identities=15% Similarity=0.197 Sum_probs=51.6
Q ss_pred CccCCceeeEEEEEecCCCCCcccccccccccccCcceEEEEEEcCHHHHHHHHHhhCCcEE-----CCEEEEEEeeCCC
Q psy16913 1 MFLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQI-----GMKRLKVQLKRPK 75 (81)
Q Consensus 1 lF~~~G~i~~v~i~~~~~~~~~kg~~~~~~~~~~~~~~~~fV~f~~~~~A~~Ai~~lng~~i-----~g~~i~V~~a~~~ 75 (81)
+|++||+|.+|.|+.+ +| ||||+|.+.++|++|++.|||..+ .|++|.|.++...
T Consensus 47 ~F~~fG~v~~v~i~~~------rg--------------faFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~~l~v~~a~~~ 106 (114)
T 2cq2_A 47 VLEKCGLVDALLMPPN------KP--------------YSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLYLNFVEKV 106 (114)
T ss_dssp HHHHHSCEEEEECCTT------CS--------------CEEEEESSHHHHHHHHHHTTTCEEECTTSCEEECEEEEESCC
T ss_pred HHHhcCCeEEEEEeCC------CC--------------EEEEEECCHHHHHHHHHHhCCCEEccccCCCcEEEEEecccC
Confidence 4899999999987642 67 999999999999999999999998 6899999999765
Q ss_pred CCCCC
Q psy16913 76 DAARP 80 (81)
Q Consensus 76 ~~~~~ 80 (81)
....|
T Consensus 107 p~~~~ 111 (114)
T 2cq2_A 107 QWSGP 111 (114)
T ss_dssp CCSSC
T ss_pred cccCC
Confidence 54443
No 153
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.53 E-value=6e-15 Score=86.50 Aligned_cols=58 Identities=12% Similarity=0.066 Sum_probs=50.1
Q ss_pred CccCCc-eeeEEEEEecCCCCCcccccccccccccCcceEEEEEEcCHHHHHHHHHhhCCcEECCEEEEEEeeCCCC
Q psy16913 1 MFLPFG-NVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQIGMKRLKVQLKRPKD 76 (81)
Q Consensus 1 lF~~~G-~i~~v~i~~~~~~~~~kg~~~~~~~~~~~~~~~~fV~f~~~~~A~~Ai~~lng~~i~g~~i~V~~a~~~~ 76 (81)
+|++|| +|..+.++.+ .++| ||||+|.+.++|++||+.|||..++|+.|+|+++..+.
T Consensus 48 ~F~~~G~~v~~v~i~~~----~~rG--------------faFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~a~~~p 106 (111)
T 2jvr_A 48 LARENSLETTFSSVNTR----DFDG--------------TGALEFPSEEILVEALERLNNIEFRGSVITVERDDNPP 106 (111)
T ss_dssp HHHHHTCCCSEEECSSC----SSSC--------------CEEEEESSHHHHHHHHHHTTTEEETTEEEEEEESCC--
T ss_pred HHHHhCCeeEEEEEEcC----CCCC--------------EEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECCCCC
Confidence 488999 8999887532 4678 99999999999999999999999999999999997654
No 154
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.53 E-value=1.2e-14 Score=95.09 Aligned_cols=63 Identities=17% Similarity=0.280 Sum_probs=58.8
Q ss_pred CccCCceeeEEEEEecCCCCCcccccccccccccCcceEEEEEEcCHHHHHHHHHhhCCcEECCEEEEEEeeCCCCCC
Q psy16913 1 MFLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQIGMKRLKVQLKRPKDAA 78 (81)
Q Consensus 1 lF~~~G~i~~v~i~~~~~~~~~kg~~~~~~~~~~~~~~~~fV~f~~~~~A~~Ai~~lng~~i~g~~i~V~~a~~~~~~ 78 (81)
+|+.||.|.++.++.++ +|.++| ||||+|.+.++|.+|+..|||..+.|+.|.|.++.++..+
T Consensus 205 ~f~~~G~i~~v~i~~~~-~g~~~g--------------~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~~ 267 (284)
T 3smz_A 205 ALSAVHSPTFCQLACGQ-DGQLKG--------------FAVLEYETAEMAEEAQQQADGLSLGGSHLRVSFCAPGPPG 267 (284)
T ss_dssp HTCSSSCCSEEEEEECS-SCCEEE--------------EEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCSSSCH
T ss_pred HhhCCCCeEEEEEEECC-CCCccc--------------EEEEEeCCHHHHHHHHHHhCCCccCCeEEEEEEecCCCcc
Confidence 58999999999999987 788888 9999999999999999999999999999999999887653
No 155
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.53 E-value=2.9e-14 Score=85.16 Aligned_cols=56 Identities=30% Similarity=0.445 Sum_probs=50.3
Q ss_pred CccCCceeeEEEEEecCCCCCcccccccccccccCcceE-EEEEEcCHHHHHHHHHhhCCcEECC--EEEEEEeeCCCC
Q psy16913 1 MFLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCF-GFVSFDNPASAHTAIQAMNGFQIGM--KRLKVQLKRPKD 76 (81)
Q Consensus 1 lF~~~G~i~~v~i~~~~~~~~~kg~~~~~~~~~~~~~~~-~fV~f~~~~~A~~Ai~~lng~~i~g--~~i~V~~a~~~~ 76 (81)
+|++||.|.+|.|+. + .| | |||+|.+.++|..|++.|||..|.| +.|+|++|+++.
T Consensus 45 ~Fs~yG~V~~v~i~~-~-----~G--------------f~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~Ak~~~ 103 (124)
T 2e5i_A 45 VCNPVGKVQRIVIFK-R-----NG--------------IQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYARPTR 103 (124)
T ss_dssp HHTTTSCEEEEEEEE-S-----SS--------------EEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECCSCSC
T ss_pred HHHhcCCEEEEEEEe-C-----CC--------------CEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEecCCc
Confidence 599999999999864 2 27 7 9999999999999999999999988 699999998875
No 156
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.52 E-value=8.3e-15 Score=85.31 Aligned_cols=55 Identities=16% Similarity=0.115 Sum_probs=50.1
Q ss_pred CccCCceeeEEEEEecCCCCCcccccccccccccCcceEEEEEEcCHHHHHHHHHhhCCcEECCEEEEEEeeCCC
Q psy16913 1 MFLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQIGMKRLKVQLKRPK 75 (81)
Q Consensus 1 lF~~~G~i~~v~i~~~~~~~~~kg~~~~~~~~~~~~~~~~fV~f~~~~~A~~Ai~~lng~~i~g~~i~V~~a~~~ 75 (81)
+|++||+|.++.|+. ++| ||||+|.+.++|++|++.|||..+.|++|.|+||...
T Consensus 30 ~F~~~G~i~~v~i~~------~~g--------------~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 84 (111)
T 1whx_A 30 TFSRFGSLGRVLLPE------GGI--------------TAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAPIG 84 (111)
T ss_dssp HHHTTSCEEEEECCS------SSS--------------CEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEETT
T ss_pred HHHhcCCEEEEEEeC------CCC--------------EEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECCCC
Confidence 589999999998774 467 9999999999999999999999999999999999664
No 157
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.52 E-value=1.6e-15 Score=91.30 Aligned_cols=63 Identities=21% Similarity=0.274 Sum_probs=52.1
Q ss_pred CccCCceeeEEE--E---EecCCCCCcccccccccccccCcceEEEEEEcCHHHHHHHHHhhCCcEECCEEEEEEeeCCC
Q psy16913 1 MFLPFGNVISSK--V---FIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQIGMKRLKVQLKRPK 75 (81)
Q Consensus 1 lF~~~G~i~~v~--i---~~~~~~~~~kg~~~~~~~~~~~~~~~~fV~f~~~~~A~~Ai~~lng~~i~g~~i~V~~a~~~ 75 (81)
+|++||.|.++. + +....++.++| ||||+|.+.++|.+|+..|||..+.|+.|.|++|++.
T Consensus 65 ~F~~~G~i~~~~~~~~~di~~~~~g~~~g--------------~afV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a~~~ 130 (143)
T 3egn_A 65 IFGRYVDFSSETQRIMFDIRLMKEGRMKG--------------QAFIGLPNEKAAAKALKEANGYVLFGKPMVVQFARSA 130 (143)
T ss_dssp HHGGGCCTTCHHHHHHCEEEEEEETTTEE--------------EEEEECSSHHHHHHHHHHHTTBEETTEECEEEECCCS
T ss_pred HHHHhCCcccccccceeeEEeccCCCccc--------------EEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEEECCCC
Confidence 489999987741 1 11123678888 9999999999999999999999999999999999775
Q ss_pred CC
Q psy16913 76 DA 77 (81)
Q Consensus 76 ~~ 77 (81)
..
T Consensus 131 ~~ 132 (143)
T 3egn_A 131 RP 132 (143)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 158
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.52 E-value=1.7e-14 Score=84.96 Aligned_cols=56 Identities=20% Similarity=0.105 Sum_probs=50.4
Q ss_pred CccCCceeeEEEEEecCCCCCcccccccccccccCcceEEEEEEcCHHHHHHHHHhhCCcEECCEEEEEEeeCC
Q psy16913 1 MFLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQIGMKRLKVQLKRP 74 (81)
Q Consensus 1 lF~~~G~i~~v~i~~~~~~~~~kg~~~~~~~~~~~~~~~~fV~f~~~~~A~~Ai~~lng~~i~g~~i~V~~a~~ 74 (81)
.|++||+|.++.|+++. ++| |+||+|.+.++|++|++.|||..++||.|.|+++..
T Consensus 37 ~f~kfG~V~~v~i~~~~----~~G--------------~~fV~f~~~e~A~~Ai~~lnG~~f~GR~i~v~~~~~ 92 (114)
T 3s6e_A 37 ECNKHGGVIHIYVDKNS----AQG--------------NVYVKCPSIAAAIAAVNALHGRWFAGKMITAAYVPL 92 (114)
T ss_dssp HHTTTTCCSEEEECTTC----TTC--------------CEEEECSSHHHHHHHHHHHTTCEETTEECEEEEECH
T ss_pred HHhccCCEEEEEEecCC----CcE--------------EEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEEcH
Confidence 37899999999987653 478 999999999999999999999999999999999853
No 159
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.52 E-value=2.1e-14 Score=91.41 Aligned_cols=55 Identities=18% Similarity=0.256 Sum_probs=51.0
Q ss_pred CccCCceeeEEEEEecCCCCCcccccccccccccCcceEEEEEEcCHHHHHHHHHhhCCcEECCEEEEEEeeCC
Q psy16913 1 MFLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQIGMKRLKVQLKRP 74 (81)
Q Consensus 1 lF~~~G~i~~v~i~~~~~~~~~kg~~~~~~~~~~~~~~~~fV~f~~~~~A~~Ai~~lng~~i~g~~i~V~~a~~ 74 (81)
+|++||.|.+|+++.++ +| ||||+|.++++|+.||+.|||..+.|+.|+|.+++.
T Consensus 25 ~F~~~G~v~~v~i~~~~-----~g--------------~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s~~ 79 (205)
T 3tyt_A 25 VFCLYGNVEKVKFMKSK-----PG--------------AAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVSKQ 79 (205)
T ss_dssp HHTTTSCEEEEEECTTS-----TT--------------CEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSC
T ss_pred HHHhcCCeEEEEEecCC-----CC--------------EEEEEECCHHHHHHHHHHhCCCEECCceEEEEEccC
Confidence 58999999999998753 68 999999999999999999999999999999999864
No 160
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.52 E-value=1.8e-14 Score=83.17 Aligned_cols=57 Identities=18% Similarity=0.239 Sum_probs=49.4
Q ss_pred CccCCceeeEEEEEecCCCCCcccccccccccccCcceEEEEEEcCHHHHHHHHHhhCCcEECCEEEEEEeeCCCCCC
Q psy16913 1 MFLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQIGMKRLKVQLKRPKDAA 78 (81)
Q Consensus 1 lF~~~G~i~~v~i~~~~~~~~~kg~~~~~~~~~~~~~~~~fV~f~~~~~A~~Ai~~lng~~i~g~~i~V~~a~~~~~~ 78 (81)
+|++||+|.+|.|+ ++++| ||||+|.+.++|+.|++.+++ +.|++|+|+|+.++...
T Consensus 37 ~F~~~G~V~~v~i~-----~~~rG--------------faFVeF~~~~~A~~Ai~~~~~--~~g~~l~V~~a~~~~~~ 93 (100)
T 2d9o_A 37 LLQKYGEVLNLVLS-----SKKPG--------------TAVVEFATVKAAELAVQNEVG--LVDNPLKISWLEGQPQD 93 (100)
T ss_dssp HHHTTSCEEEEEEE-----SSSSS--------------EEEEEESCHHHHHHHHHTCCB--CSSSBCEEECSSCCCCC
T ss_pred HHHhcCCEEEEEEc-----cCCCC--------------EEEEEECCHHHHHHHHHhcCC--CCCCeEEEEEccCCCCC
Confidence 58999999999988 36688 999999999999999998554 68999999999876543
No 161
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.52 E-value=1e-14 Score=85.79 Aligned_cols=58 Identities=14% Similarity=0.213 Sum_probs=50.6
Q ss_pred CccCCceeeEEEEEecCCCCCcccccccccccccCcceEEEEEEcCHHHHHHHHHhhCC--cEECCEEEEEEeeCCCCCC
Q psy16913 1 MFLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNG--FQIGMKRLKVQLKRPKDAA 78 (81)
Q Consensus 1 lF~~~G~i~~v~i~~~~~~~~~kg~~~~~~~~~~~~~~~~fV~f~~~~~A~~Ai~~lng--~~i~g~~i~V~~a~~~~~~ 78 (81)
+|++||+|.+|.|++ ++| ||||+|.+.++|+.|++.||+ ..+.|++|+|++|.++...
T Consensus 46 lF~~fG~V~~v~i~~------~kg--------------~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~a~~~~~~ 105 (112)
T 1x4f_A 46 LAEPYGKIKNYILMR------MKS--------------QAFIEMETREDAMAMVDHCLKKALWFQGRCVKVDLSEKYKKL 105 (112)
T ss_dssp TTTTTSCCSEEEEET------TTT--------------EEEEECSSHHHHHHHHHHHHHSCCCSSSSCCEEEEECSCSSS
T ss_pred HHHhcCCEEEEEEec------CCC--------------EEEEEECCHHHHHHHHHHhccCCceECCEEEEEEECcccccc
Confidence 699999999999874 367 999999999999999998864 5699999999999876543
No 162
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.52 E-value=1.7e-14 Score=84.21 Aligned_cols=58 Identities=17% Similarity=0.273 Sum_probs=52.8
Q ss_pred CccCCceeeEEEEEecCCCCCcccccccccccccCcceEEEEEEcCHHHHHHHHHhhCCcEECCEEEEEEeeCCC
Q psy16913 1 MFLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQIGMKRLKVQLKRPK 75 (81)
Q Consensus 1 lF~~~G~i~~v~i~~~~~~~~~kg~~~~~~~~~~~~~~~~fV~f~~~~~A~~Ai~~lng~~i~g~~i~V~~a~~~ 75 (81)
+|++| .|.+|.|+.|+. |+++| ||||+|.++++|++|+ .+|+..+.||.|.|..+.++
T Consensus 36 ~F~~~-~v~~v~i~~d~~-g~~~G--------------~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~a~~~ 93 (109)
T 2dnn_A 36 FFHGL-RVDAVHLLKDHV-GRNNG--------------NGLVKFLSPQDTFEAL-KRNRMLMIQRYVEVSPATER 93 (109)
T ss_dssp HTTTS-CCCEEEECCCTT-CCCCS--------------EEEEECSSHHHHHHHH-HTTTEEETTEEEEEEECCHH
T ss_pred HhccC-CeeEEEEEECCC-CCCCe--------------EEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECCcc
Confidence 48899 899999999984 89999 9999999999999999 59999999999999988653
No 163
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.52 E-value=2.2e-14 Score=79.15 Aligned_cols=53 Identities=25% Similarity=0.411 Sum_probs=48.9
Q ss_pred CccCCceeeEEEEEecCCCCCcccccccccccccCcceEEEEEEcCHHHHHHHHHhh-CCcEECCEEEEEEeeC
Q psy16913 1 MFLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAM-NGFQIGMKRLKVQLKR 73 (81)
Q Consensus 1 lF~~~G~i~~v~i~~~~~~~~~kg~~~~~~~~~~~~~~~~fV~f~~~~~A~~Ai~~l-ng~~i~g~~i~V~~a~ 73 (81)
+|++||+|.++.++.+ +| ||||+|.+.++|++|++.| ||..+.|+.|+|+||+
T Consensus 32 ~f~~~G~i~~~~~~~~------kg--------------~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~~ak 85 (85)
T 2ytc_A 32 HFYQFGEIRTITVVQR------QQ--------------CAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVKWGR 85 (85)
T ss_dssp HHHTTSCEEEEEEEGG------GT--------------EEEEEESSHHHHHHHHHTTTTTCEETTEECCEEECC
T ss_pred HHHhCCCEeEEEEECC------CC--------------EEEEEECCHHHHHHHHHHhcCCeeECCCEEEEEecC
Confidence 4889999999999864 57 9999999999999999999 9999999999999985
No 164
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.52 E-value=1.9e-14 Score=94.44 Aligned_cols=61 Identities=26% Similarity=0.441 Sum_probs=55.2
Q ss_pred CccCCceeeEEEEEecCC-CCCcccccccccccccCcceEEEEEEcCHHHHHHHHHhhCCcEECCEEEEEEeeCCCC
Q psy16913 1 MFLPFGNVISSKVFIDRA-TNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQIGMKRLKVQLKRPKD 76 (81)
Q Consensus 1 lF~~~G~i~~v~i~~~~~-~~~~kg~~~~~~~~~~~~~~~~fV~f~~~~~A~~Ai~~lng~~i~g~~i~V~~a~~~~ 76 (81)
+|++||+|.+++++.+.. ||.++| ||||+|.+.++|.+|+ .|||..+.|+.|.|.||.++.
T Consensus 231 ~F~~~G~v~~v~i~~~~~~tg~~~g--------------~afV~F~~~~~A~~A~-~l~g~~~~g~~i~V~~a~~k~ 292 (292)
T 2ghp_A 231 SFEGFGSIEKINIPAGQKEHSFNNC--------------CAFMVFENKDSAERAL-QMNRSLLGNREISVSLADKKP 292 (292)
T ss_dssp HHGGGSCEEEEECCSCCC---CCCE--------------EEEEEESSHHHHHHHG-GGTTEEETTEEEEEEECCCCC
T ss_pred HHhccCCeeEEEEEecCCcCCCCce--------------EEEEEeCCHHHHHHHH-HhcCCEECCcEEEEEEecCCC
Confidence 489999999999999875 588888 9999999999999999 999999999999999999863
No 165
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.52 E-value=5.1e-14 Score=79.93 Aligned_cols=56 Identities=30% Similarity=0.455 Sum_probs=50.1
Q ss_pred CccCC--ceeeEEEEEecCCCCCcccccccccccccCcceEEEEEEcCHHHHHHHHHhhCCcEECCEEEEEEeeCCCCCC
Q psy16913 1 MFLPF--GNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQIGMKRLKVQLKRPKDAA 78 (81)
Q Consensus 1 lF~~~--G~i~~v~i~~~~~~~~~kg~~~~~~~~~~~~~~~~fV~f~~~~~A~~Ai~~lng~~i~g~~i~V~~a~~~~~~ 78 (81)
+|++| |.|.+++++ +| ||||+|.+.++|++|+..|||..+.|+.|.|++++++...
T Consensus 35 ~F~~~g~g~v~~~~~~--------~g--------------~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~~ 92 (99)
T 2cpd_A 35 EFNNIKPGAVERVKKI--------RD--------------YAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLAKPVDKD 92 (99)
T ss_dssp HHHTTSTTCEEEEEEC--------SS--------------EEEEEESSHHHHHHHHHHHSSEEETTEEEEEECCCCCCCC
T ss_pred HHHhcCCcceEEEEEe--------CC--------------eEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEEECCCCCCC
Confidence 48899 899988764 56 9999999999999999999999999999999999887653
No 166
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.51 E-value=1.5e-14 Score=87.29 Aligned_cols=58 Identities=29% Similarity=0.608 Sum_probs=53.9
Q ss_pred CccCCceeeEEEEEecCCCCCcccccccccccccCcceEEEEEEcCHHHHHHHHHhhCCcEECCEE--EEEEee
Q psy16913 1 MFLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQIGMKR--LKVQLK 72 (81)
Q Consensus 1 lF~~~G~i~~v~i~~~~~~~~~kg~~~~~~~~~~~~~~~~fV~f~~~~~A~~Ai~~lng~~i~g~~--i~V~~a 72 (81)
+|++||+|.++.++.++.+|.++| ||||+|.+.++|.+|++.|||..+.|+. |.|+||
T Consensus 108 ~f~~~G~i~~~~i~~~~~~g~~~g--------------~afV~f~~~~~A~~A~~~l~g~~~~g~~~~i~v~~A 167 (167)
T 1fxl_A 108 LFSQYGRIITSRILVDQVTGVSRG--------------VGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFA 167 (167)
T ss_dssp HHGGGSCEEEEEEEECTTTCCEEE--------------EEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEEEC
T ss_pred HHHhcCCEeEEEEEecCCCCCccc--------------eEEEEeCCHHHHHHHHHHhcCCccCCCccceEEEeC
Confidence 489999999999999998899999 9999999999999999999999999965 888876
No 167
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.51 E-value=9.2e-15 Score=82.81 Aligned_cols=55 Identities=27% Similarity=0.527 Sum_probs=50.3
Q ss_pred CccCCceeeEEEEEecCCCCCcccccccccccccCcceEEEEEEcCHHHHHHHHHhhCCcEECCEEEEEEeeCCCCC
Q psy16913 1 MFLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQIGMKRLKVQLKRPKDA 77 (81)
Q Consensus 1 lF~~~G~i~~v~i~~~~~~~~~kg~~~~~~~~~~~~~~~~fV~f~~~~~A~~Ai~~lng~~i~g~~i~V~~a~~~~~ 77 (81)
+|++||+|.++.+. +| ||||+|.+.++|+.|++.|||..+.|+.|.|+++.++..
T Consensus 31 ~F~~~G~v~~v~i~--------~g--------------~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~~ 85 (96)
T 2kvi_A 31 IFSPYGHIMQINIK--------NA--------------FGFIQFDNPQSVRDAIECESQEMNFGKKLILEVSSSNAR 85 (96)
T ss_dssp HHTTTCCCCEEEEE--------TT--------------EEEEEESCHHHHHHHHHHHTCSSCBTTTBCEEEEECCCC
T ss_pred HHHhcCCEEEEEEe--------CC--------------EEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEEcCcCCC
Confidence 48999999999884 67 999999999999999999999999999999999977654
No 168
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.50 E-value=5e-14 Score=87.26 Aligned_cols=61 Identities=20% Similarity=0.384 Sum_probs=55.8
Q ss_pred CccCCceeeEEEEEecCCCCCcccccccccccccCcceEEEEEEcCHHHHHHHHHhhCCcEECCEEEEEEeeCCCC
Q psy16913 1 MFLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQIGMKRLKVQLKRPKD 76 (81)
Q Consensus 1 lF~~~G~i~~v~i~~~~~~~~~kg~~~~~~~~~~~~~~~~fV~f~~~~~A~~Ai~~lng~~i~g~~i~V~~a~~~~ 76 (81)
+|++||+|.++.++.++.+|.++| ||||+|.++++|++|++. ++..+.|+.|.|.++.++.
T Consensus 33 ~F~~~G~i~~v~i~~~~~~g~~~g--------------~afV~f~~~~~A~~A~~~-~~~~~~g~~l~v~~~~~~~ 93 (196)
T 1l3k_A 33 HFEQWGTLTDCVVMRDPNTKRSRG--------------FGFVTYATVEEVDAAMNA-RPHKVDGRVVEPKRAVSRE 93 (196)
T ss_dssp HHGGGSCEEEEEEEECTTTCCEEE--------------EEEEEESSHHHHHHHHHT-CSCEETTEECEEEECCC--
T ss_pred HHHhCCCEEEEEEEEcCCCCCccc--------------eEEEEeCCHHHHHHHHhc-CCCEECCEEeeeecccCcc
Confidence 589999999999999998999999 999999999999999985 9999999999999997654
No 169
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.49 E-value=2.8e-14 Score=89.55 Aligned_cols=62 Identities=31% Similarity=0.496 Sum_probs=55.3
Q ss_pred CccCCceeeEEEEEecCCCCCcccccccccccccCcceEEEEEEcCHHHHHHHHHhhCCcEECCEEEEEEeeCCCC
Q psy16913 1 MFLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQIGMKRLKVQLKRPKD 76 (81)
Q Consensus 1 lF~~~G~i~~v~i~~~~~~~~~kg~~~~~~~~~~~~~~~~fV~f~~~~~A~~Ai~~lng~~i~g~~i~V~~a~~~~ 76 (81)
+|++||+|.+++++.++.++.++| ||||+|.+.++|++|++.|||..+.|+.|.|.++.+..
T Consensus 48 ~f~~~G~i~~v~i~~~~~~g~~~g--------------~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~~~~~ 109 (216)
T 2qfj_A 48 AFAPFGPIKSIDMSWDSVTMKHKG--------------FAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSNIG 109 (216)
T ss_dssp HHGGGSCEEEEEECCC-CC-CCCS--------------EEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECCSCCG
T ss_pred HHHhCCCEEEEEEeecCCCCccCc--------------eEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecCCCcc
Confidence 489999999999999998999999 99999999999999999999999999999999887654
No 170
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.49 E-value=1.7e-14 Score=81.01 Aligned_cols=58 Identities=17% Similarity=0.269 Sum_probs=48.9
Q ss_pred CccCCce-eeEEEEEecCCCCCcccccccccccccCcceEEEEEEcCHHHHHHHHHhhCC-cEECCEEEEEEeeCCCCCC
Q psy16913 1 MFLPFGN-VISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNG-FQIGMKRLKVQLKRPKDAA 78 (81)
Q Consensus 1 lF~~~G~-i~~v~i~~~~~~~~~kg~~~~~~~~~~~~~~~~fV~f~~~~~A~~Ai~~lng-~~i~g~~i~V~~a~~~~~~ 78 (81)
+|++||. |..+.+. ++| ||||+|.+.++|++|++.||| ..++|+.|+|+++.++..+
T Consensus 28 ~F~~~G~vv~~~~~~-------~~g--------------~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~~~~~ 86 (93)
T 2cqh_A 28 LFGDRKLPLAGQVLL-------KSG--------------YAFVDYPDQNWAIRAIETLSGKVELHGKIMEVDYSVSKKLR 86 (93)
T ss_dssp HHHHTTCCCSSCEEE-------ETT--------------EEEECCSCHHHHHHHHHHHTTTCEETTEECEEEECCCCCCC
T ss_pred HHHHcCCceEEEEEc-------CCC--------------EEEEEECCHHHHHHHHHHccCCeeECCEEEEEEEccCcccc
Confidence 4788998 5555442 367 999999999999999999999 9999999999999887654
Q ss_pred C
Q psy16913 79 R 79 (81)
Q Consensus 79 ~ 79 (81)
.
T Consensus 87 ~ 87 (93)
T 2cqh_A 87 S 87 (93)
T ss_dssp C
T ss_pred C
Confidence 3
No 171
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.49 E-value=1.8e-15 Score=87.44 Aligned_cols=59 Identities=8% Similarity=0.184 Sum_probs=54.5
Q ss_pred CccCCce---eeEEEEEecCCCCCcccccccccccccCcceEEEEEEcCHHHHHHHHHhhCCcEECCEEEEEEeeCCC
Q psy16913 1 MFLPFGN---VISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQIGMKRLKVQLKRPK 75 (81)
Q Consensus 1 lF~~~G~---i~~v~i~~~~~~~~~kg~~~~~~~~~~~~~~~~fV~f~~~~~A~~Ai~~lng~~i~g~~i~V~~a~~~ 75 (81)
+|+.||. |.+|+|+.++. |+++| ||||+|.+.++|++|++ +|+..+.|+.|.|.++.++
T Consensus 31 ~F~~~g~~~~v~~v~i~~~~~-g~~~G--------------~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~~a~~~ 92 (107)
T 2lmi_A 31 FFSDCRIRNGENGIHFLLNRD-GKRRG--------------DALIEMESEQDVQKALE-KHRMYMGQRYVEVYEINNE 92 (107)
T ss_dssp HTTTSCBTTTTTTEECCCCTT-STTCS--------------EEEEEBSSHHHHHHHHT-TTTCCSSSSCCCCEECCHH
T ss_pred HHHhcCCcCCcceEEEEECCC-CCEee--------------EEEEEECCHHHHHHHHH-hCcceeCCeEEEEEECCHH
Confidence 4889888 89999999986 99999 99999999999999999 9999999999999998764
No 172
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.49 E-value=9.3e-14 Score=84.93 Aligned_cols=57 Identities=16% Similarity=0.247 Sum_probs=51.3
Q ss_pred CccCCceeeEEEEEecCCCCCcccccccccccccCcceEEEEEEcCHHHHHHHHHhhCCcEECCEEEEEEeeCCCC
Q psy16913 1 MFLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQIGMKRLKVQLKRPKD 76 (81)
Q Consensus 1 lF~~~G~i~~v~i~~~~~~~~~kg~~~~~~~~~~~~~~~~fV~f~~~~~A~~Ai~~lng~~i~g~~i~V~~a~~~~ 76 (81)
+|++||.|..+ ..++.++| ||||+|.+.++|.+|+..|||..+.|+.|.|++|.++.
T Consensus 119 ~F~~~g~v~~~-----~~~~~~~g--------------~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~k~ 175 (175)
T 1fje_B 119 VFEDALEIRLV-----SQDGKSKG--------------IAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEKG 175 (175)
T ss_dssp HCTTCSEEEEE-----CSSSSCCS--------------EEEEECSSHHHHHHHHHHHTEEEETTEEEEEEECSSCC
T ss_pred HHHhcCeEEEe-----cCCCCCce--------------EEEEEECCHHHHHHHHHHhCCCEECCeEEEEEecCCCC
Confidence 48889988765 45788899 99999999999999999999999999999999998863
No 173
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.48 E-value=1.7e-14 Score=82.74 Aligned_cols=53 Identities=25% Similarity=0.276 Sum_probs=48.0
Q ss_pred CccCC-ceeeEEEEEecCCCCCcccccccccccccCcceEEEEEEcCHHHHHHHHHhhCCcEECCEEEEEEeeCCCCC
Q psy16913 1 MFLPF-GNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQIGMKRLKVQLKRPKDA 77 (81)
Q Consensus 1 lF~~~-G~i~~v~i~~~~~~~~~kg~~~~~~~~~~~~~~~~fV~f~~~~~A~~Ai~~lng~~i~g~~i~V~~a~~~~~ 77 (81)
+|++| |+|.+| ++ | +|||+|.+.++|++|++.|||..+.||+|+|++|+.+.+
T Consensus 33 lF~~yGG~Vl~V-------tg---G--------------~AfV~F~~~esA~~A~~~l~G~~l~gr~i~v~~A~~~sd 86 (96)
T 2diu_A 33 LSDNCGGKVLSI-------TG---C--------------SAILRFINQDSAERAQKRMENEDVFGNRIIVSFTPKNRE 86 (96)
T ss_dssp HHHTTTCCEEEC-------CT---T--------------CEEEEESSHHHHHHHHHHHTTCCSSSSCCEEESSCCSCC
T ss_pred HHHHcCCeeEEE-------ec---C--------------EEEEEECCHHHHHHHHHHhcCCccCCceEEEEecCCCcc
Confidence 58999 599987 33 7 999999999999999999999999999999999988764
No 174
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.48 E-value=7e-14 Score=78.76 Aligned_cols=58 Identities=24% Similarity=0.469 Sum_probs=49.5
Q ss_pred CccCCceeeEEEEEecCCCCCcccccccccccccCcceEEEEEEcCHHHHHHHHHhhCCcEECCEEEEEEeeCCCCCC
Q psy16913 1 MFLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQIGMKRLKVQLKRPKDAA 78 (81)
Q Consensus 1 lF~~~G~i~~v~i~~~~~~~~~kg~~~~~~~~~~~~~~~~fV~f~~~~~A~~Ai~~lng~~i~g~~i~V~~a~~~~~~ 78 (81)
+|++||+|.+| +.++.++. ||||+|.++++|++|++ |||..++|+.|.|+++.++...
T Consensus 28 ~F~~~G~v~~v--~~~~~~g~-----------------~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~a~~~~~~ 85 (94)
T 2e5g_A 28 YFLAFGPVASV--VMDKDKGV-----------------FAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRPREQKEFQ 85 (94)
T ss_dssp HGGGTSCEEEE--EECSSSCC-----------------EEEEEESSHHHHHHHHT-CSCCEETTEECCCBCSCCSCCC
T ss_pred HHHhcCCeEEE--EEcCCCCc-----------------EEEEEECCHHHHHHHHh-cCCeEECCEEEEEEECCcCCCC
Confidence 48999999987 56654332 89999999999999999 9999999999999999776543
No 175
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.47 E-value=5.1e-14 Score=85.62 Aligned_cols=58 Identities=29% Similarity=0.417 Sum_probs=52.9
Q ss_pred CccCCceeeEEEEEecCCCCCcccccccccccccCcceEEEEEEcCHHHHHHHHHhhCCcEEC---CEEEEEEeeC
Q psy16913 1 MFLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQIG---MKRLKVQLKR 73 (81)
Q Consensus 1 lF~~~G~i~~v~i~~~~~~~~~kg~~~~~~~~~~~~~~~~fV~f~~~~~A~~Ai~~lng~~i~---g~~i~V~~a~ 73 (81)
+|++||+|.++.++.++ +|.++| ||||+|.+.++|.+|++.|||..+. +++|.|+||.
T Consensus 115 ~F~~~G~i~~v~~~~~~-~g~~~g--------------~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~V~~ad 175 (175)
T 3nmr_A 115 MFSSFGQIEECRILRGP-DGLSRG--------------CAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVVKFAD 175 (175)
T ss_dssp HHGGGSCEEEEEEEECT-TSCEEE--------------EEEEEESSHHHHHHHHHHHTTSCCCTTCSSCCEEEECC
T ss_pred HHHhCCCEEEEEEEECC-CCCEEE--------------EEEEEECCHHHHHHHHHHhcCCcccCCCCCCeEEEecC
Confidence 48999999999999997 688888 9999999999999999999998877 4999999973
No 176
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.47 E-value=1.3e-13 Score=90.10 Aligned_cols=59 Identities=25% Similarity=0.440 Sum_probs=54.2
Q ss_pred CccCCceeeEEEEEecCCCCCcccccccccccccCcceEEEEEEcCHHHHHHHHHhhCCcEECCEEEEEEeeCCCC
Q psy16913 1 MFLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQIGMKRLKVQLKRPKD 76 (81)
Q Consensus 1 lF~~~G~i~~v~i~~~~~~~~~kg~~~~~~~~~~~~~~~~fV~f~~~~~A~~Ai~~lng~~i~g~~i~V~~a~~~~ 76 (81)
+|++||+|.+|++++ +++++| ||||+|.+.++|++|++.|||..+.|+.|+|+++.++.
T Consensus 33 ~F~~~G~i~~v~~~~---~~~~~g--------------~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 91 (282)
T 3pgw_A 33 IFSQFGQILDILVSR---SLKMRG--------------QAFVIFKEVSSATNALRSMQGFPFYDKPMRIQYAKTDS 91 (282)
T ss_pred HHhccCCeEEEEEcC---CCCcce--------------EEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEEeccCc
Confidence 589999999998875 677888 99999999999999999999999999999999997654
No 177
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.46 E-value=1.4e-13 Score=89.91 Aligned_cols=62 Identities=26% Similarity=0.388 Sum_probs=58.5
Q ss_pred CccCCceeeEEEEEecCCCCCcccccccccccccCcceEEEEEEcCHHHHHHHHHhhCCcEECCEEEEEEeeCCCC
Q psy16913 1 MFLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQIGMKRLKVQLKRPKD 76 (81)
Q Consensus 1 lF~~~G~i~~v~i~~~~~~~~~kg~~~~~~~~~~~~~~~~fV~f~~~~~A~~Ai~~lng~~i~g~~i~V~~a~~~~ 76 (81)
+|++||+|.++.++.++.+|.++| ||||+|.+.++|.+|+..|||..+.|+.|.|.++.++.
T Consensus 115 ~f~~~G~i~~~~i~~~~~~g~~~g--------------~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~a~~~~ 176 (284)
T 3smz_A 115 LVRPFGSLERCFLVYSERTGQSKG--------------YGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHWTDAGQ 176 (284)
T ss_dssp HHGGGSCEEEEEEEECTTTCCEEE--------------EEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCGGG
T ss_pred HHHhcCCeeEEEEEeeCCCCccce--------------EEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECCCCC
Confidence 488999999999999998999999 99999999999999999999999999999999997754
No 178
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.46 E-value=3.8e-14 Score=79.86 Aligned_cols=59 Identities=27% Similarity=0.367 Sum_probs=52.0
Q ss_pred CccCCceeeEE-EEEecCCCCCcccccccccccccCcceEEEEEEcCHHHHHHHHHhhCCcEECCEEEEEEeeCCCCC
Q psy16913 1 MFLPFGNVISS-KVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQIGMKRLKVQLKRPKDA 77 (81)
Q Consensus 1 lF~~~G~i~~v-~i~~~~~~~~~kg~~~~~~~~~~~~~~~~fV~f~~~~~A~~Ai~~lng~~i~g~~i~V~~a~~~~~ 77 (81)
+|++||+|.++ .++.++. .| .|||+|.+.++|++|+..|||..+.|+.|.|+++.+++.
T Consensus 35 ~F~~~G~v~~~~~i~~~~~----~~--------------~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~~~ 94 (96)
T 2e44_A 35 LLVQYGVVESCEQVNTDSE----TA--------------VVNVTYSSKDQARQALDKLNGFQLENFTLKVAYIPDEMA 94 (96)
T ss_dssp HHHHHSCEEEEEEECCSSS----SE--------------EEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEECCCCCS
T ss_pred HHHhcCCeEEEEEeecCCC----CC--------------EEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCcccc
Confidence 48899999999 4777753 24 589999999999999999999999999999999999854
No 179
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.46 E-value=5.5e-14 Score=82.16 Aligned_cols=56 Identities=18% Similarity=0.347 Sum_probs=47.9
Q ss_pred CccCCceeeEEEEEecCCCCCcccccccccccccCcceEEEEEEcCHHHHHHHHHhhCCcEECCEE-----EEEEeeCCC
Q psy16913 1 MFLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQIGMKR-----LKVQLKRPK 75 (81)
Q Consensus 1 lF~~~G~i~~v~i~~~~~~~~~kg~~~~~~~~~~~~~~~~fV~f~~~~~A~~Ai~~lng~~i~g~~-----i~V~~a~~~ 75 (81)
+|++||+|.++.|+.+ | ||||+|.+.++|++||+.|||..|+|+. |+|..+.++
T Consensus 36 ~F~~~G~v~~~~i~~~-------g--------------~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i~v~~~~~~ 94 (115)
T 3beg_B 36 HMREAGDVCYADVYRD-------G--------------TGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVKVDGPR 94 (115)
T ss_dssp HHGGGSCEEEEEECTT-------S--------------EEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBCEEEECC--
T ss_pred HHHhcCCeEEEEEecC-------C--------------EEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEEEeccCCCC
Confidence 5899999999998866 7 9999999999999999999999999988 888887665
Q ss_pred CC
Q psy16913 76 DA 77 (81)
Q Consensus 76 ~~ 77 (81)
..
T Consensus 95 ~~ 96 (115)
T 3beg_B 95 SP 96 (115)
T ss_dssp --
T ss_pred CC
Confidence 43
No 180
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.45 E-value=1.6e-13 Score=76.48 Aligned_cols=54 Identities=26% Similarity=0.311 Sum_probs=48.9
Q ss_pred CccCCceeeEEEEEecCCCCCcccccccccccccCcceEEEEEEcCHHHHHHHHHhhCCcEECCEEEEEEeeCCC
Q psy16913 1 MFLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQIGMKRLKVQLKRPK 75 (81)
Q Consensus 1 lF~~~G~i~~v~i~~~~~~~~~kg~~~~~~~~~~~~~~~~fV~f~~~~~A~~Ai~~lng~~i~g~~i~V~~a~~~ 75 (81)
+|++| +|.++++. +++| ||||+|.++++|++|++.|||..+.|++|+|+++..+
T Consensus 25 ~F~~~-~v~~~~i~------~~~g--------------~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~ 78 (88)
T 1wg1_A 25 LLKDY-DLKYCYVD------RNKR--------------TAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQPTD 78 (88)
T ss_dssp HTCSS-CCCCEEEE------GGGT--------------EEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECCCC
T ss_pred HHhhC-CeEEEEEe------CCCc--------------EEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcCCC
Confidence 48899 99999884 5678 9999999999999999999999999999999999664
No 181
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.44 E-value=9.5e-15 Score=88.66 Aligned_cols=60 Identities=15% Similarity=0.208 Sum_probs=54.6
Q ss_pred CccCCceeeEEEEEecCCCCCcccccccccccccCcceEEEEEEcCHHHHHHHHHhhCCcEECCEEEEEEeeCCCCC
Q psy16913 1 MFLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQIGMKRLKVQLKRPKDA 77 (81)
Q Consensus 1 lF~~~G~i~~v~i~~~~~~~~~kg~~~~~~~~~~~~~~~~fV~f~~~~~A~~Ai~~lng~~i~g~~i~V~~a~~~~~ 77 (81)
+|++|| |.+|.|++|+. ++++| ||||+|.++++|++|| .+|+..+.|+.|.|.++.++..
T Consensus 66 ~F~~~G-i~~v~i~~d~~-g~srG--------------faFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~~a~~~~~ 125 (139)
T 2hgn_A 66 FFSPLN-PVRVHIEIGPD-GRVTG--------------EADVEFATHEEAVAAM-SKDRANMQHRYIELFLNSTTGA 125 (139)
T ss_dssp HHCSCC-CSEEECCCSSS-SCSSC--------------CCEEECSHHHHHHHHT-TCCSCSSSSCCCCCEECCCSCC
T ss_pred HHHhcC-CeEEEEEECCC-CCCce--------------EEEEEeCCHHHHHHHH-hhCCCEECCEEEEEEECCCCCC
Confidence 489999 77999999985 89999 9999999999999999 6999999999999999987654
No 182
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.42 E-value=4.1e-13 Score=84.87 Aligned_cols=59 Identities=19% Similarity=0.113 Sum_probs=52.7
Q ss_pred CccCCceeeEEEEEecCCCCCcccccccccccccCcceEEEEEEcCHHHHHHHHHhhCCcEECCEEEEEEeeCCC
Q psy16913 1 MFLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQIGMKRLKVQLKRPK 75 (81)
Q Consensus 1 lF~~~G~i~~v~i~~~~~~~~~kg~~~~~~~~~~~~~~~~fV~f~~~~~A~~Ai~~lng~~i~g~~i~V~~a~~~ 75 (81)
+|++||+|.+|+|+++. ++.++| ||||+|.+.++|++|+..++ ..++|+.|.|.++..-
T Consensus 129 ~F~~~G~v~~v~i~~~~-~~~~kG--------------~aFVeF~~~e~A~~A~~~~~-~~~~Gr~l~V~~~~~y 187 (193)
T 2voo_A 129 WLEDKGQVLNIQMRRTL-HKAFKG--------------SIFVVFDSIESAKKFVETPG-QKYKETDLLILFKDDY 187 (193)
T ss_dssp HHTTSCCEEEEEEEECT-TCCEEE--------------EEEEEESSHHHHHHHHHCTT-CEETTEECEEEETTTC
T ss_pred HHhcCCCEEEEEEEECC-CCCccc--------------EEEEEECCHHHHHHHHHhCC-CeECCEEEEEEEhHHH
Confidence 48999999999999987 588888 99999999999999998665 5999999999998653
No 183
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.41 E-value=4e-13 Score=76.38 Aligned_cols=53 Identities=28% Similarity=0.490 Sum_probs=48.8
Q ss_pred ccCCceeeEEEEEecCCCCCcccccccccccccCcceEEEEEEcCHHHHHHHHHhhCCcEECCEEEEEEeeCCCCC
Q psy16913 2 FLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQIGMKRLKVQLKRPKDA 77 (81)
Q Consensus 2 F~~~G~i~~v~i~~~~~~~~~kg~~~~~~~~~~~~~~~~fV~f~~~~~A~~Ai~~lng~~i~g~~i~V~~a~~~~~ 77 (81)
|++||.|..++++.|+ +||+|.+.++|.+||+ |||..+.||.|+|+++.|.-.
T Consensus 36 F~~~G~Vi~vr~~~d~----------------------~fVtF~d~~sAlaAi~-mnG~~v~Gr~LkV~lkt~dW~ 88 (91)
T 2dnr_A 36 FASFGEVILIRFVEDK----------------------MWVTFLEGSSALNVLS-LNGKELLNRTITIALKSPSGP 88 (91)
T ss_dssp HHTTCCEEEEEECSSS----------------------EEEEESSHHHHHHGGG-GTTCEETTEEEEEEECCCSSC
T ss_pred HHhCCCeEEEEEecCC----------------------EEEEECChHHHHHHHh-cCCeEeCCeEEEEEeCCCCcc
Confidence 7899999999999873 6999999999999998 999999999999999988643
No 184
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.39 E-value=2.7e-13 Score=88.74 Aligned_cols=56 Identities=25% Similarity=0.305 Sum_probs=49.6
Q ss_pred CccCCceeeEEEEEecCCCCCcccccccccccccCcceEEEEEEcCHHHHHHHHHhhCCcEE------------CCEEEE
Q psy16913 1 MFLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQI------------GMKRLK 68 (81)
Q Consensus 1 lF~~~G~i~~v~i~~~~~~~~~kg~~~~~~~~~~~~~~~~fV~f~~~~~A~~Ai~~lng~~i------------~g~~i~ 68 (81)
+|++||+|.+|+|+.+ +| ||||+|.+.++|+.|++.|||..| .|+.|.
T Consensus 163 ~F~~fG~I~~v~v~~~------kG--------------~AFV~F~~~~~Ae~A~~am~g~~l~~~~~~e~~~~~~gr~L~ 222 (240)
T 3u1l_A 163 VFSRLGDIDRIRYVES------KN--------------CGFVKFKYQANAEFAKEAMSNQTLLLPSDKEWDDRREGTGLL 222 (240)
T ss_dssp HHHTTSCEEEEEEEGG------GT--------------EEEEEESSHHHHHHHHHHHTTCCCCCTTSTTGGGGGGSCCCE
T ss_pred HHHccCCEEEEEEECC------CC--------------EEEEEeCCHHHHHHHHHHhCCCEEeccccccccccCCCCEEE
Confidence 4899999999999853 67 999999999999999999999999 899999
Q ss_pred EEeeCCCC
Q psy16913 69 VQLKRPKD 76 (81)
Q Consensus 69 V~~a~~~~ 76 (81)
|+||.++.
T Consensus 223 V~wA~~~p 230 (240)
T 3u1l_A 223 VKWANEDP 230 (240)
T ss_dssp EEECC---
T ss_pred EEEccCCC
Confidence 99997654
No 185
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.39 E-value=6.1e-13 Score=74.69 Aligned_cols=55 Identities=22% Similarity=0.397 Sum_probs=43.0
Q ss_pred CccCCceeeEEEEEecCCCCCcccccccccccccCcceEEEEEEcCHHHHHHHHHhhCCcE--ECCEEEEEEeeCCCCCC
Q psy16913 1 MFLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQ--IGMKRLKVQLKRPKDAA 78 (81)
Q Consensus 1 lF~~~G~i~~v~i~~~~~~~~~kg~~~~~~~~~~~~~~~~fV~f~~~~~A~~Ai~~lng~~--i~g~~i~V~~a~~~~~~ 78 (81)
+|++||+|.+++|+++ ++| ||||+|.++++|++ ++|.. +.|+.|.|.+|.++..+
T Consensus 31 ~F~~~G~i~~v~i~~~-----srG--------------faFV~F~~~~~A~~----~~~~~~~~~g~~v~v~~a~~k~~~ 87 (89)
T 3d2w_A 31 FFCQYGEVVDVFIPKP-----FRA--------------FAFVTFADDKVAQS----LCGEDLIIKGISVHISNAEPKHNK 87 (89)
T ss_dssp HHTTTSCEEEEECCSS-----CCS--------------EEEEEESCHHHHHH----HTTCEEEETTEEEEEEECC-----
T ss_pred HHhccCCEEEEEEeeC-----CCC--------------EEEEEECCHHHHHH----HcCCCcccCCEEEEEEEcCCCCcC
Confidence 4899999999999874 688 99999999999883 56655 45999999999988754
No 186
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.39 E-value=3.5e-13 Score=81.87 Aligned_cols=62 Identities=26% Similarity=0.389 Sum_probs=54.9
Q ss_pred CccCCceeeEEEEEecCCCC--CcccccccccccccCcceEEEEEEcCHHHHHHHHHhhCCcEEC---CEEEEEEeeCCC
Q psy16913 1 MFLPFGNVISSKVFIDRATN--QSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQIG---MKRLKVQLKRPK 75 (81)
Q Consensus 1 lF~~~G~i~~v~i~~~~~~~--~~kg~~~~~~~~~~~~~~~~fV~f~~~~~A~~Ai~~lng~~i~---g~~i~V~~a~~~ 75 (81)
+|++||+|.++++++++.++ .++| ||||+|.++++|++|++.|||..+. ++.+.+.++.++
T Consensus 23 ~F~~~G~i~~v~i~~~~~~~~~~~~g--------------~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~~~~~~~~ 88 (175)
T 3nmr_A 23 LFEQYGAVYEINVLRDRSQNPPQSKG--------------CCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQMKPADSE 88 (175)
T ss_dssp HHHTTSCEEEEEEEEECSSSSCEEEE--------------EEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCEEEECGGG
T ss_pred HHHhCCCEEEEEEEecCCCCCCCcce--------------EEEEEECCHHHHHHHHHHhcCcEEccCCccceEEcccccc
Confidence 48999999999999999776 7888 9999999999999999999998876 678888887655
Q ss_pred C
Q psy16913 76 D 76 (81)
Q Consensus 76 ~ 76 (81)
.
T Consensus 89 ~ 89 (175)
T 3nmr_A 89 K 89 (175)
T ss_dssp C
T ss_pred c
Confidence 4
No 187
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.38 E-value=5e-14 Score=83.87 Aligned_cols=59 Identities=12% Similarity=0.088 Sum_probs=52.7
Q ss_pred CccCCcee----eEEEEEecCCCCCcccccccccccccCcceEEEEEEcCHHHHHHHHHhhCCcEECCEEEEEEeeCCC
Q psy16913 1 MFLPFGNV----ISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQIGMKRLKVQLKRPK 75 (81)
Q Consensus 1 lF~~~G~i----~~v~i~~~~~~~~~kg~~~~~~~~~~~~~~~~fV~f~~~~~A~~Ai~~lng~~i~g~~i~V~~a~~~ 75 (81)
+|++||+| .+|.|+.++ +|+++| ||||+|.++++|++|++. |+..+.||.|.|..+.++
T Consensus 43 ~F~~~g~v~g~v~~v~i~~d~-~gr~~G--------------~aFV~F~~~~~A~~Al~~-~~~~l~gR~i~V~~a~~~ 105 (123)
T 2dha_A 43 FFGQHCPITGGKEGILFVTYP-DGRPTG--------------DAFVLFACEEYAQNALRK-HKDLLGKRYIELFRSTAA 105 (123)
T ss_dssp HHHTTSCCTTGGGGEEEEECT-TSCEEE--------------EEEECCSSHHHHHHHHTT-TTEESSSCEECCEEECHH
T ss_pred HHHhhCCccCCcceEEEEECC-CCCEee--------------EEEEEECCHHHHHHHHHh-CCCeeCCeEEEEEECCHH
Confidence 48899875 689999985 899999 999999999999999995 999999999999988654
No 188
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.38 E-value=4.3e-13 Score=81.19 Aligned_cols=59 Identities=29% Similarity=0.521 Sum_probs=54.2
Q ss_pred CccCCceeeEEEEEecCCCCCcccccccccccccCcceEEEEEEcCHHHHHHHHHhhCCcEECCEEEEEEeeCCC
Q psy16913 1 MFLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQIGMKRLKVQLKRPK 75 (81)
Q Consensus 1 lF~~~G~i~~v~i~~~~~~~~~kg~~~~~~~~~~~~~~~~fV~f~~~~~A~~Ai~~lng~~i~g~~i~V~~a~~~ 75 (81)
+|++||+|.++++++++.+|.++| ||||+|.++++|++|++. +..+.|+.|.|.++.++
T Consensus 23 ~F~~~G~i~~v~i~~~~~~g~~~g--------------~afV~f~~~~~a~~A~~~--~~~~~g~~i~v~~~~~~ 81 (167)
T 2cjk_A 23 YFGKYGTVTDLKIMKDPATGRSRG--------------FGFLSFEKPSSVDEVVKT--QHILDGKVIDPKRAIPR 81 (167)
T ss_dssp HHTTTCCEEEEECCCCTTTSSCCS--------------CEEEEESSTHHHHHHHHS--CCEETTEECCCEECCCH
T ss_pred HHHhCCCEEEEEEEECCCCCCccc--------------eEEEEEccHHHHHHHHhc--ccccCCeEcccccccch
Confidence 489999999999999998999999 999999999999999994 67999999999988764
No 189
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.37 E-value=9.8e-14 Score=83.00 Aligned_cols=59 Identities=17% Similarity=0.274 Sum_probs=52.3
Q ss_pred CccCCceee--EEEEEecCCCCCcccccccccccccCcceEEEEEEcCHHHHHHHHHhhCCcEECCEEEEEEeeCCCC
Q psy16913 1 MFLPFGNVI--SSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQIGMKRLKVQLKRPKD 76 (81)
Q Consensus 1 lF~~~G~i~--~v~i~~~~~~~~~kg~~~~~~~~~~~~~~~~fV~f~~~~~A~~Ai~~lng~~i~g~~i~V~~a~~~~ 76 (81)
+|++| .|. +|+|++|+. |+++| ||||+|.++++|++||+ +++..|.||.|.|..+.+++
T Consensus 62 ~F~~~-~i~~~~v~i~~d~~-GrsrG--------------faFV~F~~~e~A~~Al~-~~~~~l~gR~I~V~~a~~~e 122 (126)
T 2hgm_A 62 FFSGL-EIVPNGITLPVDPE-GKITG--------------EAFVQFASQELAEKALG-KHKERIGHRYIEVFKSSQEE 122 (126)
T ss_dssp HTTTS-CEEEEEEECCCCSS-SSSCS--------------EEEEEESSTTHHHHHHT-TTTCCBTTBCCCCEEECHHH
T ss_pred HHhcC-CceeeEEEEEECCC-CCCce--------------EEEEEECCHHHHHHHHH-HCCCEECCEEEEEEECCHHH
Confidence 48999 566 899999986 99999 99999999999999998 57899999999999987643
No 190
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.36 E-value=1.5e-12 Score=85.03 Aligned_cols=54 Identities=28% Similarity=0.490 Sum_probs=50.2
Q ss_pred CccCCceeeEEEEEecCCCCCcccccccccccccCcceEEEEEEcCHHHHHHHHHhhCCcEEC-CEEEEEEeeC
Q psy16913 1 MFLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQIG-MKRLKVQLKR 73 (81)
Q Consensus 1 lF~~~G~i~~v~i~~~~~~~~~kg~~~~~~~~~~~~~~~~fV~f~~~~~A~~Ai~~lng~~i~-g~~i~V~~a~ 73 (81)
+|++||.|.+++++.++ +| ||||+|.+.++|.+|++.|||..+. |+.|+|+|++
T Consensus 227 ~F~~~G~i~~v~~~~~~-----~g--------------~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ak 281 (282)
T 3pgw_A 227 LFNQFPGFKEVRLVPGR-----HD--------------IAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAK 281 (282)
T ss_pred HHHhcCCeEEEEEecCC-----Cc--------------EEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEEEec
Confidence 58999999999999654 57 9999999999999999999999999 9999999986
No 191
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.35 E-value=7e-13 Score=77.18 Aligned_cols=55 Identities=18% Similarity=0.182 Sum_probs=45.0
Q ss_pred CccCCceeeEEEEEecCCC---CCcccccccccccccCcceEEEEEEcCHHHHHHHHHhhCCcEECCEEEEEEee
Q psy16913 1 MFLPFGNVISSKVFIDRAT---NQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQIGMKRLKVQLK 72 (81)
Q Consensus 1 lF~~~G~i~~v~i~~~~~~---~~~kg~~~~~~~~~~~~~~~~fV~f~~~~~A~~Ai~~lng~~i~g~~i~V~~a 72 (81)
+|++||+|. +.++.++.+ |+++| ||||+|.++++|++|++.|+ .++|+.+.+..+
T Consensus 28 ~F~~~G~i~-~~~~~~~~~~~~g~~~G--------------~aFV~f~~~~~a~~Ai~~~~--~~~G~~~~~~~~ 85 (114)
T 2dnl_A 28 SFRRFGPLV-VDWPHKAESKSYFPPKG--------------YAFLLFQEESSVQALIDACL--EEDGKLYLCVSS 85 (114)
T ss_dssp HTTTTCCCC-EECTTSSSSCCCSCTTS--------------EEEECCSSHHHHHHHHHHSE--EETTEEEEEECC
T ss_pred HHHhcCCEE-EEEeecCCCCCCCCccc--------------EEEEEECCHHHHHHHHHhhh--hcCCcEEEeccC
Confidence 589999999 888888877 68888 99999999999999999983 355555555444
No 192
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.35 E-value=6.2e-13 Score=85.15 Aligned_cols=56 Identities=21% Similarity=0.443 Sum_probs=52.1
Q ss_pred CccCCceeeEEEEEecCCCCCcccccccccccccCcceEEEEEEcCHHHHHHHHHhhCCcEECCEEEEEEeeCCC
Q psy16913 1 MFLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQIGMKRLKVQLKRPK 75 (81)
Q Consensus 1 lF~~~G~i~~v~i~~~~~~~~~kg~~~~~~~~~~~~~~~~fV~f~~~~~A~~Ai~~lng~~i~g~~i~V~~a~~~ 75 (81)
+|++||+|.+++++.++ +| ||||+|.+.++|++|++.|||..+.|+.|.|.++.++
T Consensus 55 ~F~~~G~i~~v~i~~~~-----~g--------------~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~~a~~~ 110 (229)
T 2adc_A 55 LFGVYGDVQRVKILFNK-----KE--------------NALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKHQ 110 (229)
T ss_dssp HHHHHTCEEEEEECCTT-----SC--------------CEEEEESCHHHHHHHHHHHTTCBCSSSBCEEECCSCC
T ss_pred HHHhCCCeEEEEEEECC-----CC--------------EEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEecCc
Confidence 48899999999999876 77 9999999999999999999999999999999999765
No 193
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=99.35 E-value=1.3e-12 Score=83.35 Aligned_cols=58 Identities=22% Similarity=0.307 Sum_probs=51.9
Q ss_pred ccCCceeeEEEEEecCCCC----CcccccccccccccCcceEEEEEEcCHHHHHHHHHhhCCcEECCEEEEEEeeC
Q psy16913 2 FLPFGNVISSKVFIDRATN----QSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQIGMKRLKVQLKR 73 (81)
Q Consensus 2 F~~~G~i~~v~i~~~~~~~----~~kg~~~~~~~~~~~~~~~~fV~f~~~~~A~~Ai~~lng~~i~g~~i~V~~a~ 73 (81)
|++||+|.++.|+++..++ +++| ++||+|.+.++|++|++.|||..+.||.|.|.+..
T Consensus 150 ~~~~G~v~~~~v~~~~~~~~~~~~~~G--------------~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~ 211 (222)
T 3dxb_A 150 CGKFGAVNRVIIYQEKQGEEEDAEIIV--------------KIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYD 211 (222)
T ss_dssp HTTTSCEEEEEEEEEECCSSTTCCEEE--------------EEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECC
T ss_pred HHccCCeEEEEEecCCCCcccCcCcee--------------EEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcC
Confidence 7899999999999765443 6666 99999999999999999999999999999999874
No 194
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.33 E-value=9.9e-13 Score=86.22 Aligned_cols=62 Identities=18% Similarity=0.323 Sum_probs=50.4
Q ss_pred CccCCc-eeeEEEEEecCCCCCcccccccccccccCcceEEEEEEcCHHHHHHHHHhhCCcEECCEEEEEEeeCCCCC
Q psy16913 1 MFLPFG-NVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQIGMKRLKVQLKRPKDA 77 (81)
Q Consensus 1 lF~~~G-~i~~v~i~~~~~~~~~kg~~~~~~~~~~~~~~~~fV~f~~~~~A~~Ai~~lng~~i~g~~i~V~~a~~~~~ 77 (81)
+|++|| +|.++.++.++. +.++| ||||+|.+.++|.+|+..|||..+.|+.|.|.++.++..
T Consensus 137 ~f~~~G~~i~~v~i~~~~~-~~~~g--------------~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 199 (292)
T 2ghp_A 137 LLQDINVVALSIRLPSLRF-NTSRR--------------FAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKVSNPLEK 199 (292)
T ss_dssp HHHHTTCCCCEEECC--------CC--------------EEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCCC--
T ss_pred HHHHhCCCeEEEEEEeCCC-CCcce--------------EEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECCCCcc
Confidence 488999 999999999874 77888 999999999999999999999999999999999987653
No 195
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.33 E-value=4.4e-13 Score=83.54 Aligned_cols=56 Identities=21% Similarity=0.443 Sum_probs=51.9
Q ss_pred CccCCceeeEEEEEecCCCCCcccccccccccccCcceEEEEEEcCHHHHHHHHHhhCCcEECCEEEEEEeeCCC
Q psy16913 1 MFLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQIGMKRLKVQLKRPK 75 (81)
Q Consensus 1 lF~~~G~i~~v~i~~~~~~~~~kg~~~~~~~~~~~~~~~~fV~f~~~~~A~~Ai~~lng~~i~g~~i~V~~a~~~ 75 (81)
+|++||+|.+++++.++ +| ||||+|.++++|++|++.|||..+.|+.|.|.++.++
T Consensus 24 ~F~~~G~i~~v~i~~~~-----~g--------------~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~~~ 79 (198)
T 1qm9_A 24 LFGVYGDVQRVKILFNK-----KE--------------NALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKHQ 79 (198)
T ss_dssp HHHTTCCCSEEECSTTC-----SS--------------CCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEECCCC
T ss_pred HHHhcCCEEEEEEEeCC-----CC--------------EEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEecCC
Confidence 48899999999998875 67 9999999999999999999999999999999999765
No 196
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.32 E-value=1.9e-12 Score=84.32 Aligned_cols=62 Identities=24% Similarity=0.324 Sum_probs=54.6
Q ss_pred CccCCceeeEEEEEecCCCCCcccccccccccccCcceEEEEEEcCHHHHHHHHHhhC-CcEEC---CEEEEEEeeCCCC
Q psy16913 1 MFLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMN-GFQIG---MKRLKVQLKRPKD 76 (81)
Q Consensus 1 lF~~~G~i~~v~i~~~~~~~~~kg~~~~~~~~~~~~~~~~fV~f~~~~~A~~Ai~~ln-g~~i~---g~~i~V~~a~~~~ 76 (81)
+|++||+|.++.++.++ +|.++| ||||+|.+.++|.+|+..|| |..+. +++|.|.++.+..
T Consensus 116 ~F~~~G~i~~v~i~~~~-~g~~~g--------------~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r~i~v~~~~~~~ 180 (261)
T 3sde_A 116 AFSQFGPVEKAVVVVDD-RGRATG--------------KGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIVEPMEQFD 180 (261)
T ss_dssp HHGGGSCEEEEEEEEET-TSCEEE--------------EEEEEESSHHHHHHHHHHHHHSCEESSSSCCBCEEEECCCEE
T ss_pred HHHhcCCeEEEEeeeCC-CCCcCc--------------EEEEEeCCHHHHHHHHHHhcCCeEEecCCCceEEEeeccccC
Confidence 48999999999999995 889999 99999999999999999994 55555 9999999997764
Q ss_pred C
Q psy16913 77 A 77 (81)
Q Consensus 77 ~ 77 (81)
+
T Consensus 181 ~ 181 (261)
T 3sde_A 181 D 181 (261)
T ss_dssp S
T ss_pred c
Confidence 3
No 197
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.29 E-value=1.3e-12 Score=72.58 Aligned_cols=57 Identities=19% Similarity=0.344 Sum_probs=46.5
Q ss_pred CccCCceeeEEEEEecCCCCCcccccccccccccCcceEEEEEEcCHHHHHHHHHhhCCcEECCEEEEEEeeCCCCCC
Q psy16913 1 MFLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQIGMKRLKVQLKRPKDAA 78 (81)
Q Consensus 1 lF~~~G~i~~v~i~~~~~~~~~kg~~~~~~~~~~~~~~~~fV~f~~~~~A~~Ai~~lng~~i~g~~i~V~~a~~~~~~ 78 (81)
+|++||+|.++.|+.+ ++| ||||+|.+.++|++|+.. ...+.|+.|.|.++.++...
T Consensus 25 ~F~~~G~i~~v~i~~~-----~~g--------------~afV~f~~~~~a~~~~~~--~~~~~g~~l~v~~a~~~~~~ 81 (88)
T 1wf0_A 25 FFSQYGDVMDVFIPKP-----FRA--------------FAFVTFADDQIAQSLCGE--DLIIKGISVHISNAEPKHNS 81 (88)
T ss_dssp HSTTTSCCCEEECCSS-----CCS--------------CCEEECSCHHHHHHTTTC--EEEETTEEEEEECCCCCCCC
T ss_pred HHHHcCCeeEEEEecC-----CCC--------------EEEEEECCHHHHHHHhcC--CceeCCEEEEEEecCCCCCC
Confidence 5899999999998865 578 999999999999765331 34568999999999887654
No 198
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.28 E-value=3.7e-12 Score=70.27 Aligned_cols=44 Identities=25% Similarity=0.439 Sum_probs=40.1
Q ss_pred eeeEEEEEecCCCCCcccccccccccccCcceEEEEEEcCHHHHHHHHHhhCCcEECCEEEEEEe
Q psy16913 7 NVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQIGMKRLKVQL 71 (81)
Q Consensus 7 ~i~~v~i~~~~~~~~~kg~~~~~~~~~~~~~~~~fV~f~~~~~A~~Ai~~lng~~i~g~~i~V~~ 71 (81)
+|.++.++.+ +| ||||+|.++++|++|+ .|||..+.|+.|+|+.
T Consensus 43 ~v~~~~~~~~------kg--------------~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~r 86 (87)
T 2hzc_A 43 PVLAVQINQD------KN--------------FAFLEFRSVDETTQAM-AFDGIIFQGQSLKIRR 86 (87)
T ss_dssp SEEEEEECSS------SS--------------EEEEEESSHHHHHHHG-GGTTCEETTEECEEEC
T ss_pred cceEEEecCC------Cc--------------EEEEEcCCHHHHHHHH-hcCCCEECCeEEEEeC
Confidence 8999988754 57 9999999999999999 9999999999999974
No 199
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.26 E-value=5.3e-13 Score=81.54 Aligned_cols=60 Identities=17% Similarity=0.354 Sum_probs=49.7
Q ss_pred ccCCceeeEEEEEecCCCCCcccccccccccccCcceEEEEEEcCHHHHHHHHHhhCCcEECCEEEEEEeeCCCCC
Q psy16913 2 FLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQIGMKRLKVQLKRPKDA 77 (81)
Q Consensus 2 F~~~G~i~~v~i~~~~~~~~~kg~~~~~~~~~~~~~~~~fV~f~~~~~A~~Ai~~lng~~i~g~~i~V~~a~~~~~ 77 (81)
|++||.+.. .++.+..++.++| ||||+|.++++|++|++ |||..+.|+.|.|.++.++..
T Consensus 34 f~~~g~~~~-~~~~~~~~~~~~g--------------~afV~f~~~~~a~~A~~-l~g~~~~g~~l~v~~~~~~~~ 93 (175)
T 1fje_B 34 ISELFAKND-LAVVDVRTGTNRK--------------FGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKPKGRDS 93 (175)
T ss_dssp HHHHHHHHT-CCCCEEEEETTTT--------------EEEEEESSHHHHHHHHH-GGGEEETTEEEEEECCCCSSC
T ss_pred HHHhCCcce-EEEEECCCCcccc--------------EEEEEECCHHHHHHHHh-cCCCEeCCeEEEEecCCCccc
Confidence 567777665 3445555778888 99999999999999995 999999999999999987654
No 200
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.26 E-value=4.8e-12 Score=80.99 Aligned_cols=56 Identities=18% Similarity=0.350 Sum_probs=50.6
Q ss_pred CccCCc-eeeEEEEEecCCCCCcccccccccccccCcceEEEEEEcCHHHHHHHHHhhCCcEEC-CEEEEEEeeCCC
Q psy16913 1 MFLPFG-NVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQIG-MKRLKVQLKRPK 75 (81)
Q Consensus 1 lF~~~G-~i~~v~i~~~~~~~~~kg~~~~~~~~~~~~~~~~fV~f~~~~~A~~Ai~~lng~~i~-g~~i~V~~a~~~ 75 (81)
+|++|| +|.+++++.+ ++| ||||+|.+.++|.+|++.|||..+. |+.|+|+|++++
T Consensus 171 ~f~~~G~~i~~v~i~~~-----~~g--------------~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~~a~~~ 228 (229)
T 2adc_A 171 LFSSNGGVVKGFKFFQK-----DRK--------------MALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKST 228 (229)
T ss_dssp HHHTTSCCEEEEEECSS-----STT--------------CEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEECSSC
T ss_pred HHHHcCCCeeEEEEEEC-----CCc--------------EEEEEECCHHHHHHHHHHHCCCccCCCCeEEEEEecCC
Confidence 488999 9999998653 267 9999999999999999999999999 999999999875
No 201
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.24 E-value=2.1e-12 Score=80.43 Aligned_cols=56 Identities=18% Similarity=0.345 Sum_probs=50.6
Q ss_pred CccCCc-eeeEEEEEecCCCCCcccccccccccccCcceEEEEEEcCHHHHHHHHHhhCCcEEC-CEEEEEEeeCCC
Q psy16913 1 MFLPFG-NVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQIG-MKRLKVQLKRPK 75 (81)
Q Consensus 1 lF~~~G-~i~~v~i~~~~~~~~~kg~~~~~~~~~~~~~~~~fV~f~~~~~A~~Ai~~lng~~i~-g~~i~V~~a~~~ 75 (81)
+|++|| +|.+++++.+. +| ||||+|.+.++|.+|+..|||..+. |+.|.|.|++++
T Consensus 140 ~f~~~G~~v~~v~i~~~~-----~g--------------~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~~ 197 (198)
T 1qm9_A 140 LFSSNGGVVKGFKFFQKD-----RK--------------MALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKST 197 (198)
T ss_dssp HHHHTTSCCCEEEESSTT-----SS--------------CEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEEEECCC
T ss_pred HHHHcCCCceEEEEEeCC-----Cc--------------EEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEEeeccc
Confidence 478999 99999986542 67 9999999999999999999999999 999999999875
No 202
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.20 E-value=7.3e-12 Score=79.63 Aligned_cols=56 Identities=20% Similarity=0.320 Sum_probs=48.5
Q ss_pred CccCCcee--eEEEEEecCCCCCcccccccccccccCcceEEEEEEcCHHHHHHHHHhhCCcEECCE----EEEEEee
Q psy16913 1 MFLPFGNV--ISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQIGMK----RLKVQLK 72 (81)
Q Consensus 1 lF~~~G~i--~~v~i~~~~~~~~~kg~~~~~~~~~~~~~~~~fV~f~~~~~A~~Ai~~lng~~i~g~----~i~V~~a 72 (81)
+|++||.| .+++++.++ +.++| ||||+|.+.++|.+||..|||..+.|+ ++.|++|
T Consensus 143 ~F~~~G~v~~~~v~~~~~~--~~~~g--------------~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p~~vk~~ 204 (205)
T 3tyt_A 143 ICDELGVKRPTSVKVFSGK--SERSS--------------SGLLEWDSKSDALETLGFLNHYQMKNPNGPYPYTLKLC 204 (205)
T ss_dssp HHHHHTCCCCSEEEECSCC--SSSSE--------------EEEEECSSHHHHHHHHHHHTTCEECCSSSSSCEECEEE
T ss_pred HHHhcCCcceEEEEEEcCC--CCCce--------------EEEEEeCCHHHHHHHHHHhCCCCccCCCCCcceEEEec
Confidence 58899999 899988775 45568 999999999999999999999999986 6777765
No 203
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.18 E-value=3.6e-11 Score=78.28 Aligned_cols=55 Identities=18% Similarity=0.384 Sum_probs=50.1
Q ss_pred CccCCceeeEEEEEecCCCCCcccccccccccccCcceEEEEEEcCHHHHHHHHHhhCCcEECCEEEEEEeeCCC
Q psy16913 1 MFLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQIGMKRLKVQLKRPK 75 (81)
Q Consensus 1 lF~~~G~i~~v~i~~~~~~~~~kg~~~~~~~~~~~~~~~~fV~f~~~~~A~~Ai~~lng~~i~g~~i~V~~a~~~ 75 (81)
+|++||+|.++.+.++ +| ||||+|.+.++|++|+..|||..+.|+.|.|.++.+.
T Consensus 42 ~F~~~G~i~~v~i~~~------kg--------------~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~~~ 96 (261)
T 3sde_A 42 LFERYGEPSEVFINRD------RG--------------FGFIRLESRTLAEIAKAELDGTILKSRPLRIRFATHG 96 (261)
T ss_dssp HTGGGCCCSEEEEETT------TT--------------EEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCCS
T ss_pred HHHhcCCEEEEEEeCC------Cc--------------EEEEEECCHHHHHHHHHHcCCcEECCceeEeeecccC
Confidence 4899999999998643 57 9999999999999999999999999999999998764
No 204
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.15 E-value=4e-12 Score=78.70 Aligned_cols=36 Identities=22% Similarity=0.408 Sum_probs=34.3
Q ss_pred EEEEEEcCHHHHHHHHHhhCCcEECCEEEEEEeeCCC
Q psy16913 39 FGFVSFDNPASAHTAIQAMNGFQIGMKRLKVQLKRPK 75 (81)
Q Consensus 39 ~~fV~f~~~~~A~~Ai~~lng~~i~g~~i~V~~a~~~ 75 (81)
||||+|.++++|++|+ .|||..+.|+.|.|+++.+.
T Consensus 53 ~afV~F~~~~~A~~Al-~l~g~~~~g~~i~v~~~~~~ 88 (198)
T 2yh0_A 53 FAFLEFRSVDETTQAM-AFDGIIFQGQSLKIRRPHDY 88 (198)
T ss_dssp EEEEEESCSHHHHHHG-GGTTEEETTEEEEEECCCCC
T ss_pred EEEEEeCCHHHHHHHH-HhcCCEEcCceEEEeCCCCC
Confidence 9999999999999999 79999999999999998765
No 205
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.14 E-value=4e-11 Score=68.54 Aligned_cols=50 Identities=14% Similarity=0.356 Sum_probs=45.8
Q ss_pred ccCCceeeEEEEEecCCCCCcccccccccccccCcceEEEEEEcCHHHHHHHHHhhCCcEECCEEEEEEeeCC
Q psy16913 2 FLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQIGMKRLKVQLKRP 74 (81)
Q Consensus 2 F~~~G~i~~v~i~~~~~~~~~kg~~~~~~~~~~~~~~~~fV~f~~~~~A~~Ai~~lng~~i~g~~i~V~~a~~ 74 (81)
|++||.|..++++.|+ +||+|.+.++|.+||+ |||..+.||.|+|++..+
T Consensus 45 F~~~G~Vilvr~v~d~----------------------~fVtF~d~~sAl~AI~-ldG~~v~Gr~L~V~~k~~ 94 (95)
T 1ufw_A 45 LGSYGTIVLVRINQGQ----------------------MLVTFADSHSALSVLD-VDGMKVKGRAVKISGPSS 94 (95)
T ss_dssp HHHHSCCSEEEEETTE----------------------EEEECSCSHHHHHHHH-GGGSEETTEEEEEECCCC
T ss_pred HHHCCCEEEEEEecCc----------------------EEEEEcChHHHHHHHh-cCCeeeCCeEEEEeccCC
Confidence 7889999999999884 6999999999999999 999999999999998654
No 206
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.09 E-value=1e-10 Score=79.88 Aligned_cols=53 Identities=15% Similarity=0.192 Sum_probs=44.8
Q ss_pred CccCCceeeEEEEEecCCCCCcccccccccccccCcceEEEEEEcCHHHHHHHHHhhCCcEEC---CE--EEEEEeeC
Q psy16913 1 MFLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQIG---MK--RLKVQLKR 73 (81)
Q Consensus 1 lF~~~G~i~~v~i~~~~~~~~~kg~~~~~~~~~~~~~~~~fV~f~~~~~A~~Ai~~lng~~i~---g~--~i~V~~a~ 73 (81)
+|++||+|.+|.|+. +|| ||||+|.+.++|++||+.|||..+. |+ .|.|+++.
T Consensus 40 ~F~~~G~V~~v~~~~------~kg--------------faFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~~~ly~~~~~ 97 (345)
T 3tht_A 40 VLEKCGLVDALLMPP------NKP--------------YSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLYLNFVE 97 (345)
T ss_dssp HHHTTSCEEEEECCT------TCS--------------EEEEEESSHHHHHHHHHHTTTCEEECTTSCEEECEEEECS
T ss_pred HHHhcCCeEEEEEeC------CCC--------------EEEEEECCHHHHHHHHHHhCCCccccccCCceEEEEEEee
Confidence 489999999987653 467 9999999999999999999999983 44 67888773
No 207
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.06 E-value=2.6e-10 Score=69.05 Aligned_cols=38 Identities=21% Similarity=0.397 Sum_probs=35.1
Q ss_pred EEEEEEcCHHHHHHHHHhhCCcEECCEEEEEEeeCCCCC
Q psy16913 39 FGFVSFDNPASAHTAIQAMNGFQIGMKRLKVQLKRPKDA 77 (81)
Q Consensus 39 ~~fV~f~~~~~A~~Ai~~lng~~i~g~~i~V~~a~~~~~ 77 (81)
||||+|.++++|++|+ .|||..+.|+.|.|.++.+...
T Consensus 53 ~afV~f~~~~~A~~A~-~~~~~~~~g~~i~v~~~~~~~~ 90 (172)
T 2g4b_A 53 FAFLEFRSVDETTQAM-AFDGIIFQGQSLKIRRPHDYQP 90 (172)
T ss_dssp EEEEEESSHHHHHHHG-GGTTCEETTEECEEECCSSCCC
T ss_pred EEEEEeCCHHHHHHHH-HhCCcEecCceeeecCCcccCC
Confidence 9999999999999999 8999999999999999876543
No 208
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.54 E-value=8.3e-08 Score=56.94 Aligned_cols=52 Identities=15% Similarity=0.208 Sum_probs=44.6
Q ss_pred CccCCceeeEEEEEecCCCCCcccccccccccccCcceEEEEEEcC-HHHHHHHHHhhC--CcEECCEEEEEEee
Q psy16913 1 MFLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDN-PASAHTAIQAMN--GFQIGMKRLKVQLK 72 (81)
Q Consensus 1 lF~~~G~i~~v~i~~~~~~~~~kg~~~~~~~~~~~~~~~~fV~f~~-~~~A~~Ai~~ln--g~~i~g~~i~V~~a 72 (81)
+|++||+|..|.++.++. .|||.|.+ +++|..|+..|| +..|.|..++++..
T Consensus 39 ~F~~~G~V~~Vd~~~g~~--------------------tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~~~evL 93 (121)
T 1owx_A 39 LFSNHGEIKWIDFVRGAK--------------------EGIILFKEKAKEALGKAKDANNGNLQLRNKEVTWEVL 93 (121)
T ss_dssp HTCSSCCEEEEECCTTCS--------------------EEEEEESSCHHHHHHHHHHTTTSCBCTTSSSEEEEEC
T ss_pred HHHhcCCEEEEEEecCCC--------------------EEEEEECCChHHHHHHHHHhhcCCcEEeCcEEEEEEC
Confidence 489999999999988764 68999999 799999999995 77888988777654
No 209
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=97.78 E-value=2.3e-05 Score=45.86 Aligned_cols=46 Identities=15% Similarity=0.140 Sum_probs=39.1
Q ss_pred ceeeEEEEEecCCCCCcccccccccccccCcceEEEEEEcCHHHHHHHHHhhCCcEECCEEEEEEe
Q psy16913 6 GNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQIGMKRLKVQL 71 (81)
Q Consensus 6 G~i~~v~i~~~~~~~~~kg~~~~~~~~~~~~~~~~fV~f~~~~~A~~Ai~~lng~~i~g~~i~V~~ 71 (81)
|.|..+.+..|- . =|+|+|.+...|.+|.-.|||.++.||.|++.-
T Consensus 51 g~i~KI~L~pDH-----~---------------GAivef~d~~~AgKasLaL~G~ef~gr~Lr~gT 96 (117)
T 2l9w_A 51 KDIRKILLVSDF-----N---------------GAIIIFRDSKFAAKMLMILNGSQFQGKVIRSGT 96 (117)
T ss_dssp TTCSEEEEETTT-----T---------------EEEEECSCHHHHHHHHHHHSSEEETTEEEEEEC
T ss_pred cceeEEEEecCC-----C---------------ceEEEEccchhhHHHHhhcCCeeecCeEEEecC
Confidence 777777766664 2 599999999999999999999999999999753
No 210
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=97.47 E-value=0.0001 Score=44.08 Aligned_cols=35 Identities=11% Similarity=0.021 Sum_probs=28.7
Q ss_pred EEEEEecCCCCCcccccccccccccCcceEEEEEEcCHHHHHHHHHhhCCc
Q psy16913 10 SSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGF 60 (81)
Q Consensus 10 ~v~i~~~~~~~~~kg~~~~~~~~~~~~~~~~fV~f~~~~~A~~Ai~~lng~ 60 (81)
+++|+++.. .++| ||||+|.++++|++|++.+++.
T Consensus 2 ~~kl~ln~~--~~~G--------------~~fV~f~~~~~A~~al~~~~~~ 36 (158)
T 2kn4_A 2 QYKLILNGK--TLKG--------------ETTTEAVDAATAEKVFKQYAND 36 (158)
T ss_dssp EEEEEEECS--SCEE--------------EEEEECSSHHHHHHHHHHHHHH
T ss_pred cEEEEecCc--cccc--------------hhHHHHHHHHhHHHHHHhhccc
Confidence 467777753 5777 9999999999999999888753
No 211
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.46 E-value=0.00032 Score=40.45 Aligned_cols=37 Identities=22% Similarity=0.213 Sum_probs=33.9
Q ss_pred EEEEEcCHHHHHHHHHhhCCcEECCEEEEEEeeCCCC
Q psy16913 40 GFVSFDNPASAHTAIQAMNGFQIGMKRLKVQLKRPKD 76 (81)
Q Consensus 40 ~fV~f~~~~~A~~Ai~~lng~~i~g~~i~V~~a~~~~ 76 (81)
..|.|.++++|.+|...|++..+.|+.|+|-++++-.
T Consensus 49 irv~F~~~~~A~~AR~~Lh~~~f~g~~~r~YFgq~~~ 85 (104)
T 1wey_A 49 VRINFSNPLSAADARLRLHKTEFLGKEMKLYFAQTLH 85 (104)
T ss_dssp EEEECSSTTHHHHHHHTSTTSEETTEECEEECCCCSS
T ss_pred EEEEeCChHHHHHHHHHhccceecCceeEEEecCCCC
Confidence 5799999999999999999999999999999987654
No 212
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=97.45 E-value=6.7e-05 Score=44.72 Aligned_cols=35 Identities=9% Similarity=-0.062 Sum_probs=33.2
Q ss_pred EEEEEEcCHHHHHHHHHhh-CCcEECCEEEEEEeeCC
Q psy16913 39 FGFVSFDNPASAHTAIQAM-NGFQIGMKRLKVQLKRP 74 (81)
Q Consensus 39 ~~fV~f~~~~~A~~Ai~~l-ng~~i~g~~i~V~~a~~ 74 (81)
+++|+|.++++|++|++.| ||..++| .|.++++.+
T Consensus 15 ~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~ 50 (150)
T 2i2y_A 15 ETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATK 50 (150)
T ss_dssp EEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTT
T ss_pred cceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccC
Confidence 9999999999999999999 9999999 999998865
No 213
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=97.37 E-value=0.00039 Score=40.99 Aligned_cols=50 Identities=16% Similarity=0.282 Sum_probs=39.2
Q ss_pred ccCCceeeEEEEEecCCCCCcccccccccccccCcceEEEEEEcCHHHHHHHHHhhCCcEECC-EEEEEEee
Q psy16913 2 FLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQIGM-KRLKVQLK 72 (81)
Q Consensus 2 F~~~G~i~~v~i~~~~~~~~~kg~~~~~~~~~~~~~~~~fV~f~~~~~A~~Ai~~lng~~i~g-~~i~V~~a 72 (81)
|++||.|.+..... ... +-.|.|.++.+|++|+. .||..+.| -.|-|...
T Consensus 44 F~~~G~Iv~~~~~~------~~N--------------WihI~Y~s~~~A~rAL~-kNG~ii~g~~mIGV~p~ 94 (119)
T 1wwh_A 44 FAQYGNILKHVMSN------TGN--------------WMHIRYQSKLQARKALS-KDGRIFGESIMIGVKPC 94 (119)
T ss_dssp HHTTSCEEEEEECS------SSS--------------EEEEEESSHHHHHHHHT-TTTCEETTTEECEEEEC
T ss_pred HHhhCcEEEeccCC------CCC--------------eEEEEeCCHHHHHHHHH-hCCeEecCCEEEEEEEC
Confidence 78999999877511 112 89999999999999999 69999985 55666653
No 214
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=96.62 E-value=0.00096 Score=39.93 Aligned_cols=36 Identities=31% Similarity=0.306 Sum_probs=31.3
Q ss_pred ceEEEEEEcCHHHHHHHHHhhCCcEECCEEEEEEeeC
Q psy16913 37 KCFGFVSFDNPASAHTAIQAMNGFQIGMKRLKVQLKR 73 (81)
Q Consensus 37 ~~~~fV~f~~~~~A~~Ai~~lng~~i~g~~i~V~~a~ 73 (81)
.++-.|+|+++.+|++|+. .||..+.|..|-|....
T Consensus 62 ~NWikItYds~~~A~rAL~-~NG~ii~G~mIGV~Py~ 97 (132)
T 3p3d_A 62 NSWTKITYDNPASAVDALL-ENGAVFNGVLLGVIPYT 97 (132)
T ss_dssp TTEEEEEBSSHHHHHHHHT-TTTCEETTEECEEEECC
T ss_pred CcEEEEEcCCHHHHHHHHH-hCCeEeCcEEEEEEECC
Confidence 4588999999999999998 79999999977777653
No 215
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=95.05 E-value=0.027 Score=32.14 Aligned_cols=36 Identities=31% Similarity=0.506 Sum_probs=30.1
Q ss_pred CccCCceeeEEEEEecCCCCCcccccccccccccCcceEEEEEEcCHHHHHHHHHhhC
Q psy16913 1 MFLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMN 58 (81)
Q Consensus 1 lF~~~G~i~~v~i~~~~~~~~~kg~~~~~~~~~~~~~~~~fV~f~~~~~A~~Ai~~ln 58 (81)
+|+.||. ..|+.+.|. -|||.|.+++.|..|+..+.
T Consensus 25 lFs~fgg-v~I~WidDT---------------------sAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 25 LFSAFGN-IQISWIDDT---------------------SAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp HTTTSEE-EEEEEEETT---------------------EEEEEEEEECHHHHHHHHHT
T ss_pred HHhccCC-EEEEEEcCC---------------------eEEEEecCHHHHHHHHHhcc
Confidence 5899994 457778775 89999999999999999764
No 216
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=94.44 E-value=0.17 Score=28.97 Aligned_cols=39 Identities=21% Similarity=0.385 Sum_probs=31.7
Q ss_pred EEEEEEcCHHHHHHHHHhhCCcEECCEEEEEEeeCCCCCC
Q psy16913 39 FGFVSFDNPASAHTAIQAMNGFQIGMKRLKVQLKRPKDAA 78 (81)
Q Consensus 39 ~~fV~f~~~~~A~~Ai~~lng~~i~g~~i~V~~a~~~~~~ 78 (81)
-|+|+|.+++.|++.++. ..+.+++.+|.|....++..+
T Consensus 49 ~AvItF~d~~va~rVL~k-~~H~L~~~~LsV~P~~~~~~~ 87 (104)
T 2dhx_A 49 GGVLTFREPADAERVLAQ-ADHELHGAQLSLRPAPPRAPA 87 (104)
T ss_dssp EEEEEESSHHHHHHHHTC-SCCBSSSSBCEEEECCCCCCC
T ss_pred cEEEEEcChHHHHHHhcC-CcceecCeEEEEEcCCCCCcc
Confidence 689999999999999883 357888999999877666544
No 217
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=94.37 E-value=0.031 Score=31.86 Aligned_cols=36 Identities=28% Similarity=0.504 Sum_probs=29.2
Q ss_pred CccCCceeeEEEEEecCCCCCcccccccccccccCcceEEEEEEcCHHHHHHHHHhhC
Q psy16913 1 MFLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMN 58 (81)
Q Consensus 1 lF~~~G~i~~v~i~~~~~~~~~kg~~~~~~~~~~~~~~~~fV~f~~~~~A~~Ai~~ln 58 (81)
+|+.||.| .|+.+.|. -|||.|.+++.|..|+..++
T Consensus 35 lFs~fggv-~I~WidDT---------------------sAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 35 LFSAFGNI-QISWIDDT---------------------SAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp HHTTTCSC-CCEEEETT---------------------EEEEECSCHHHHHHHHHHHH
T ss_pred HhhccCCE-EEEEEcCC---------------------eEEEEecCHHHHHHHHHhcc
Confidence 58889844 56777775 89999999999999998763
No 218
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=89.06 E-value=0.13 Score=36.37 Aligned_cols=36 Identities=14% Similarity=0.202 Sum_probs=25.1
Q ss_pred ccCCceeeEEEEEecCCCCCcccccccccccccCcceEEEEEEcCHHHHHHHHHh
Q psy16913 2 FLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQA 56 (81)
Q Consensus 2 F~~~G~i~~v~i~~~~~~~~~kg~~~~~~~~~~~~~~~~fV~f~~~~~A~~Ai~~ 56 (81)
|++||+|.++.+-.++ | - |+.|+|.+.++++.++..
T Consensus 73 ~~~~g~i~~~~~~~~~--g---~--------------~~~vef~~~~~~~~~~~~ 108 (464)
T 3pq1_A 73 LSQFGPINNHFFYESF--G---L--------------YAVVEFCQKESIGSLQNG 108 (464)
T ss_dssp HGGGSCCCCEEEECSS--S---E--------------EEEEECC---CCHHHHSS
T ss_pred HHhcCCcceEEEEccC--C---e--------------EEEEEeCCHHHHHHHHhc
Confidence 6899999998765443 2 3 999999999998877553
No 219
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=85.54 E-value=0.49 Score=24.71 Aligned_cols=34 Identities=21% Similarity=0.270 Sum_probs=26.1
Q ss_pred EEEEEEcCHHHHHHHHHhhCCcEECCEEEEEEeeC
Q psy16913 39 FGFVSFDNPASAHTAIQAMNGFQIGMKRLKVQLKR 73 (81)
Q Consensus 39 ~~fV~f~~~~~A~~Ai~~lng~~i~g~~i~V~~a~ 73 (81)
|.||+-.. +.|..+++.|++..+.|+.+.|+.+.
T Consensus 42 ~s~v~v~~-~~~~~~~~~l~~~~i~g~~~~v~~~~ 75 (76)
T 2g0c_A 42 ASYVEILN-GKGPHVLKVMKNTTVKGKQLKVNKAN 75 (76)
T ss_dssp CEEEEECT-TCHHHHHHHHTTCCC---CCCEEECC
T ss_pred cEEEEECH-HHHHHHHHHhccccCcCceEEEEECC
Confidence 78998876 45888999999999999999988764
No 220
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=70.17 E-value=4 Score=28.94 Aligned_cols=20 Identities=25% Similarity=0.471 Sum_probs=18.6
Q ss_pred EEEEEEcCHHHHHHHHHhhC
Q psy16913 39 FGFVSFDNPASAHTAIQAMN 58 (81)
Q Consensus 39 ~~fV~f~~~~~A~~Ai~~ln 58 (81)
.+||.|.+++.|..++..++
T Consensus 475 ~a~V~~~~~~~a~~~l~~~~ 494 (507)
T 3d45_A 475 SAFVSLSQPEQVQIAVNTSK 494 (507)
T ss_dssp EEEEECSCHHHHHHHHHHHT
T ss_pred eEEEEECCHHHHHHHHHHHH
Confidence 79999999999999999885
No 221
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=66.72 E-value=8 Score=21.21 Aligned_cols=37 Identities=11% Similarity=0.129 Sum_probs=28.7
Q ss_pred EEEEEEcCHHHHHHHHHhhCCcEECC-----EEEEEEeeCCC
Q psy16913 39 FGFVSFDNPASAHTAIQAMNGFQIGM-----KRLKVQLKRPK 75 (81)
Q Consensus 39 ~~fV~f~~~~~A~~Ai~~lng~~i~g-----~~i~V~~a~~~ 75 (81)
-|||.|.+.+++..-.+.++|+.+.+ .+-.|++|--+
T Consensus 47 RaYi~f~~~e~v~~f~~~~~g~~F~D~kg~~~~a~VE~AP~q 88 (91)
T 1uw4_A 47 RAYINFKNQEDIILFRDRFDGYVFLDNKGQEYPAIVEFAPFQ 88 (91)
T ss_dssp EEEEEESSSHHHHHHHHHHTTCEEECTTCCEEECEEEECSSC
T ss_pred EEEEEeCCHHHHHHHHHHhCCcEEEcCCCCEeeeEEEEcCCC
Confidence 68999999999999999999998742 23356766443
No 222
>3lpe_A Putative transcription antitermination protein NU; transcription regulation, SPT4, SPT5, NUSG, archaea, evoluti directed RNA polymerase; 1.90A {Methanocaldococcus jannaschii} PDB: 3ewg_A
Probab=59.76 E-value=8.5 Score=20.91 Aligned_cols=23 Identities=13% Similarity=0.211 Sum_probs=19.9
Q ss_pred eEEEEEEcCHHHHHHHHHhhCCc
Q psy16913 38 CFGFVSFDNPASAHTAIQAMNGF 60 (81)
Q Consensus 38 ~~~fV~f~~~~~A~~Ai~~lng~ 60 (81)
||-||++...++...+|..+.|.
T Consensus 51 GYVfVe~~~~~~~~~~I~~t~gV 73 (92)
T 3lpe_A 51 GYVLVEAETKGDVEELIKGMPRV 73 (92)
T ss_dssp TEEEEEESSHHHHHHHHTTCTTE
T ss_pred CEEEEEEecchhHHHHHHCCCCc
Confidence 39999999999999999887764
No 223
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=53.72 E-value=27 Score=19.41 Aligned_cols=35 Identities=14% Similarity=0.225 Sum_probs=27.6
Q ss_pred EEEEEEcCHHHHHHHHHhhCCcEECC-----EEEEEEeeC
Q psy16913 39 FGFVSFDNPASAHTAIQAMNGFQIGM-----KRLKVQLKR 73 (81)
Q Consensus 39 ~~fV~f~~~~~A~~Ai~~lng~~i~g-----~~i~V~~a~ 73 (81)
-|||.|.+.++...-.+.++|..+.+ -+-.|++|.
T Consensus 55 RAYI~F~~~edv~~F~~~f~g~~F~D~kg~~~~a~VE~AP 94 (97)
T 2l08_A 55 RAYINFRNPDDILLFRDRFDGYIFLDSKGLEYPAVVEFAP 94 (97)
T ss_dssp CCEEEESCHHHHHHHHHHSTTEEEECTTCCEEEEEEEECC
T ss_pred EEEEEeCCHHHHHHHHHHcCCcEEEeCCCCEeeeEEEecC
Confidence 58999999999999999999988642 244566664
No 224
>3p8b_B Transcription antitermination protein NUSG; transcription elongation factor, RNA polymerase, transferase transcription complex; 1.80A {Pyrococcus furiosus} PDB: 3qqc_D
Probab=42.65 E-value=22 Score=20.76 Aligned_cols=23 Identities=22% Similarity=0.245 Sum_probs=20.0
Q ss_pred eEEEEEEcCHHHHHHHHHhhCCc
Q psy16913 38 CFGFVSFDNPASAHTAIQAMNGF 60 (81)
Q Consensus 38 ~~~fV~f~~~~~A~~Ai~~lng~ 60 (81)
||-||++...++...++..+.|.
T Consensus 44 GYVfVe~~~~~~~~~~v~~t~gV 66 (152)
T 3p8b_B 44 GYIFVEAPNKGVVDEAIRGIRHA 66 (152)
T ss_dssp SEEEEEESSHHHHHHHHTTCTTE
T ss_pred cEEEEEEEchHHHHHHHhCCCCE
Confidence 39999999999999999888764
No 225
>3h7h_B Transcription elongation factor SPT5; helices surrounding beta sheet, activator, ME binding, nucleus, repressor, transcription regulation; 1.55A {Homo sapiens}
Probab=41.36 E-value=28 Score=19.47 Aligned_cols=24 Identities=17% Similarity=0.232 Sum_probs=20.0
Q ss_pred cceEEEEEEcCHHHHHHHHHhhCC
Q psy16913 36 QKCFGFVSFDNPASAHTAIQAMNG 59 (81)
Q Consensus 36 ~~~~~fV~f~~~~~A~~Ai~~lng 59 (81)
-+||-||+=.+..+...|++.+..
T Consensus 50 lkGyIyVEA~~~~~V~~ai~gi~~ 73 (106)
T 3h7h_B 50 VKGYIYVEAYKQTHVKQAIEGVGN 73 (106)
T ss_dssp CCSEEEEEESSHHHHHHHHTTCGG
T ss_pred CceEEEEEeCCHHHHHHHHhcccc
Confidence 455999999999999999987643
No 226
>4bby_A Alkyldihydroxyacetonephosphate synthase, peroxiso; transferase, plasmalogen, flavin, peroxisome; HET: FAD; 1.90A {Cavia porcellus} PDB: 4bc9_A* 4bca_A* 4bc7_A*
Probab=31.64 E-value=94 Score=22.55 Aligned_cols=39 Identities=15% Similarity=0.330 Sum_probs=26.4
Q ss_pred CCceeeEEEEEecCCCCCcccccccccccccCcceEEEEEEcCHHHHHHHHHhh
Q psy16913 4 PFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAM 57 (81)
Q Consensus 4 ~~G~i~~v~i~~~~~~~~~kg~~~~~~~~~~~~~~~~fV~f~~~~~A~~Ai~~l 57 (81)
.+|-|.++.+-.-+.- ..+. ++++.|.+.++|..++..+
T Consensus 370 TLGIITeatLrL~P~P-~~~~--------------~~~~~f~d~~~a~~av~~i 408 (658)
T 4bby_A 370 TLGVITEATIKIRPTP-EYQK--------------YGSVAFPNFEQGVACLREI 408 (658)
T ss_dssp SSCEEEEEEEECEECC-SEEE--------------EEEEEESSHHHHHHHHHHH
T ss_pred cCcceeeeeeeeccCC-cccc--------------ccccccCCchhhhhhHHHH
Confidence 5677777766444321 1223 7889999999998888765
No 227
>2i9x_A Putative septation protein spovg; APC86317.1, staphylococcus epidermidis ATCC 12228, ST genomics, PSI-2, protein structure initiative; 1.80A {Staphylococcus epidermidis} SCOP: d.366.1.1
Probab=25.64 E-value=87 Score=16.92 Aligned_cols=26 Identities=12% Similarity=0.167 Sum_probs=17.3
Q ss_pred eeeEEEEEecCCCCCcccccccccccccCcceEEEEEEcC
Q psy16913 7 NVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDN 46 (81)
Q Consensus 7 ~i~~v~i~~~~~~~~~kg~~~~~~~~~~~~~~~~fV~f~~ 46 (81)
+|.++++-.-...|+-++ ||=|+|.+
T Consensus 5 ~iTdVri~~~~~~g~lka--------------~asVt~dd 30 (87)
T 2i9x_A 5 KVTDVRLRKIQTDGRMKA--------------LVSITLDE 30 (87)
T ss_dssp CEEEEEEEECCSSSSEEE--------------EEEEEETT
T ss_pred EEEEEEEEEcCCCCCEEE--------------EEEEEECC
Confidence 356666654444566677 88888875
No 228
>2exu_A Transcription initiation protein SPT4/SPT5; helixs surrounding beta sheet; 2.23A {Saccharomyces cerevisiae}
Probab=24.96 E-value=50 Score=20.65 Aligned_cols=25 Identities=0% Similarity=-0.076 Sum_probs=21.3
Q ss_pred cceEEEEEEcCHHHHHHHHHhhCCc
Q psy16913 36 QKCFGFVSFDNPASAHTAIQAMNGF 60 (81)
Q Consensus 36 ~~~~~fV~f~~~~~A~~Ai~~lng~ 60 (81)
-+||-||+=.+..+...||+.+.+.
T Consensus 148 lkGYIyVEA~~~~~V~~ai~Gi~~v 172 (200)
T 2exu_A 148 YTGRIYIEAPKQSVIEKFCNGVPDI 172 (200)
T ss_dssp STTEEEEECSCHHHHHHHHTTCTTE
T ss_pred CcEEEEEEECCHHHHHHHHhhhhhh
Confidence 3559999999999999999988764
No 229
>3kiz_A Phosphoribosylformylglycinamidine cyclo-ligase; STR genomics, joint center for structural genomics, JCSG; 1.50A {Cytophaga hutchinsonii atcc 33406}
Probab=24.67 E-value=69 Score=22.16 Aligned_cols=24 Identities=13% Similarity=0.076 Sum_probs=21.5
Q ss_pred CcceEEEEEEcCHHHHHHHHHhhC
Q psy16913 35 NQKCFGFVSFDNPASAHTAIQAMN 58 (81)
Q Consensus 35 ~~~~~~fV~f~~~~~A~~Ai~~ln 58 (81)
.+.|.+||..-++++|+++++.|.
T Consensus 337 FNmGiGmVlvV~~e~a~~vl~~L~ 360 (394)
T 3kiz_A 337 FNMGHRLEIYTDAAHAEGMIAIAK 360 (394)
T ss_dssp SCTTEEEEEEECHHHHHHHHHHHH
T ss_pred cCCcccEEEEECHHHHHHHHHHHH
Confidence 578899999999999999998875
No 230
>2hpu_A NOSL protein; alpha beta topology, metal transport; NMR {Achromobacter cycloclastes} SCOP: d.357.1.1 PDB: 2hq3_A
Probab=24.09 E-value=49 Score=20.12 Aligned_cols=25 Identities=20% Similarity=0.124 Sum_probs=20.2
Q ss_pred Ccce-EEEEEEcCHHHHHHHHHhhCC
Q psy16913 35 NQKC-FGFVSFDNPASAHTAIQAMNG 59 (81)
Q Consensus 35 ~~~~-~~fV~f~~~~~A~~Ai~~lng 59 (81)
.+.| ..++-|.+.++|++-++...|
T Consensus 107 gpMG~~~l~pFa~k~dAe~Fa~~~GG 132 (175)
T 2hpu_A 107 GGMGAPEAVPFSSRDEAAAFVLAEGG 132 (175)
T ss_dssp CSSSCCCEEEESCHHHHHHHHHHTEE
T ss_pred CCCCCCcccCcCCHHHHHHHHHHcCC
Confidence 5566 789999999999998876443
No 231
>3pm9_A Putative oxidoreductase; putative D-2-hydroxyglutarate dehydrogenase, putative D-LACT dehydrogenase; HET: FAD; 2.57A {Rhodopseudomonas palustris}
Probab=23.89 E-value=1.7e+02 Score=20.33 Aligned_cols=19 Identities=21% Similarity=0.359 Sum_probs=15.4
Q ss_pred EEEEEEcCHHHHHHHHHhh
Q psy16913 39 FGFVSFDNPASAHTAIQAM 57 (81)
Q Consensus 39 ~~fV~f~~~~~A~~Ai~~l 57 (81)
..++.|.+.++|..++..+
T Consensus 233 ~~~~~~~~~~~a~~~~~~~ 251 (476)
T 3pm9_A 233 TAFVGLQSPDDALKLLGIA 251 (476)
T ss_dssp EEEEEESCHHHHHHHHHHH
T ss_pred EEEEEcCCHHHHHHHHHHH
Confidence 6788899999888877665
No 232
>1nz8_A Transcription antitermination protein NUSG; transcription elongation, riken structural genomics/proteomics initiative, RSGI; NMR {Thermus thermophilus} SCOP: d.58.42.1
Probab=23.82 E-value=60 Score=18.03 Aligned_cols=24 Identities=17% Similarity=0.318 Sum_probs=19.1
Q ss_pred ceEEEEEEcCHH-----HHHHHHHhhCCc
Q psy16913 37 KCFGFVSFDNPA-----SAHTAIQAMNGF 60 (81)
Q Consensus 37 ~~~~fV~f~~~~-----~A~~Ai~~lng~ 60 (81)
.||-||.+...+ ++...+....|.
T Consensus 62 PGYVFV~~~~~~~~~~~~~~~~vr~t~gV 90 (119)
T 1nz8_A 62 PGYLFIQMDLGDEEEPNEAWEVVRGTPGI 90 (119)
T ss_dssp TTEEEEEECCCSSSSCCHHHHHHHHSTTC
T ss_pred CCEEEEEeeccccccchhHHHHHHcCCCc
Confidence 349999999877 778888877764
No 233
>2ia9_A Putative septation protein spovg; APC85465, bacillus subtilis subsp. subtilis STR. 168, structural genomics, PSI-2; 3.00A {Bacillus subtilis} SCOP: d.366.1.1
Probab=22.68 E-value=1.1e+02 Score=17.00 Aligned_cols=26 Identities=8% Similarity=0.194 Sum_probs=17.2
Q ss_pred eeeEEEEEecCCCCCcccccccccccccCcceEEEEEEcC
Q psy16913 7 NVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDN 46 (81)
Q Consensus 7 ~i~~v~i~~~~~~~~~kg~~~~~~~~~~~~~~~~fV~f~~ 46 (81)
.|.+|++-.-...|+-++ ||=|+|.+
T Consensus 5 ~ITdVri~~i~~~gklkA--------------~aSVt~dd 30 (100)
T 2ia9_A 5 EVTDVRLRRVNTDGRMRA--------------IASITLDH 30 (100)
T ss_dssp CEEEEEEEECCSSSSEEE--------------EEEEEETT
T ss_pred EEEEEEEEEcCCCCCEEE--------------EEEEEECC
Confidence 366666654444566677 88888875
No 234
>2i9z_A Putative septation protein spovg; APC86317, staphylococcus epidermidis ATCC 12228, STRU genomics, PSI-2, protein structure initiative; 2.30A {Staphylococcus epidermidis} SCOP: d.366.1.1
Probab=21.58 E-value=1.2e+02 Score=17.03 Aligned_cols=25 Identities=12% Similarity=0.163 Sum_probs=15.4
Q ss_pred eeEEEEEecCCCCCcccccccccccccCcceEEEEEEcC
Q psy16913 8 VISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDN 46 (81)
Q Consensus 8 i~~v~i~~~~~~~~~kg~~~~~~~~~~~~~~~~fV~f~~ 46 (81)
|.+|++-.-...|+-++ ||=|+|.+
T Consensus 6 iTdVri~~i~~~gklkA--------------~aSVt~dd 30 (105)
T 2i9z_A 6 VTDVRLRKIQTDGRMKA--------------LVSITLDE 30 (105)
T ss_dssp EEEEEEEECCSCSSEEE--------------EEEEEETT
T ss_pred EEEEEEEEeCCCCCEEE--------------EEEEEECC
Confidence 55565544444566666 88788765
No 235
>2e5p_A Protein PHF1, PHD finger protein 1; tudor domain, PHF1 protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.81 E-value=1e+02 Score=15.98 Aligned_cols=9 Identities=22% Similarity=0.552 Sum_probs=7.7
Q ss_pred EEEEEEcCH
Q psy16913 39 FGFVSFDNP 47 (81)
Q Consensus 39 ~~fV~f~~~ 47 (81)
.|+|.|+|.
T Consensus 39 ~ClV~FeD~ 47 (68)
T 2e5p_A 39 VCLVQFEDD 47 (68)
T ss_dssp EEEEEETTT
T ss_pred EEEEEEccC
Confidence 899999874
Done!