Your job contains 1 sequence.
>psy16913
MFLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGF
QIGMKRLKVQLKRPKDAARPY
The BLAST search returned 9 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy16913
(81 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
RGD|1307630 - symbol:Celf4 "CUGBP, Elav-like family membe... 297 2.5e-26 1
FB|FBgn0264001 - symbol:bru-3 "bruno-3" species:7227 "Dro... 296 3.2e-26 1
ZFIN|ZDB-GENE-110408-50 - symbol:celf3b "cugbp, Elav-like... 294 6.7e-26 1
UNIPROTKB|F1NYP4 - symbol:CELF4 "Uncharacterized protein"... 292 8.4e-26 1
ZFIN|ZDB-GENE-000501-2 - symbol:celf3a "cugbp, Elav-like ... 289 3.2e-25 1
UNIPROTKB|F1S8E8 - symbol:CELF5 "Uncharacterized protein"... 286 3.6e-25 1
UNIPROTKB|F1P5J4 - symbol:BRUNOL6 "Uncharacterized protei... 285 4.6e-25 1
UNIPROTKB|Q91579 - symbol:tnrc4-a "CUGBP Elav-like family... 285 1.0e-24 1
UNIPROTKB|F1PXQ8 - symbol:CELF5 "Uncharacterized protein"... 286 1.1e-24 1
UNIPROTKB|F1MD42 - symbol:F1MD42 "Uncharacterized protein... 286 1.1e-24 1
UNIPROTKB|B4DQL3 - symbol:CELF3 "CUGBP Elav-like family m... 281 1.2e-24 1
UNIPROTKB|Q5SZQ7 - symbol:CELF3 "CUGBP Elav-like family m... 281 1.3e-24 1
ZFIN|ZDB-GENE-050208-746 - symbol:celf5 "cugbp, Elav-like... 287 1.8e-24 1
ZFIN|ZDB-GENE-040718-300 - symbol:celf4 "CUGBP, Elav-like... 285 1.9e-24 1
UNIPROTKB|Q7ZWM3 - symbol:tnrc4-b "CUGBP Elav-like family... 282 2.3e-24 1
UNIPROTKB|Q08E07 - symbol:CELF3 "CUGBP Elav-like family m... 281 3.0e-24 1
UNIPROTKB|Q5SZQ8 - symbol:CELF3 "CUGBP Elav-like family m... 281 3.1e-24 1
UNIPROTKB|F1ST15 - symbol:CELF3 "Uncharacterized protein"... 281 3.1e-24 1
MGI|MGI:1926034 - symbol:Celf3 "CUGBP, Elav-like family m... 281 3.1e-24 1
UNIPROTKB|H0Y623 - symbol:CELF3 "CUGBP Elav-like family m... 281 3.1e-24 1
UNIPROTKB|Q8N6W0 - symbol:CELF5 "CUGBP Elav-like family m... 281 3.8e-24 1
UNIPROTKB|B3KWE6 - symbol:BRUNOL6 "cDNA FLJ42868 fis, clo... 276 4.2e-24 1
RGD|1563168 - symbol:Celf3 "CUGBP, Elav-like family membe... 281 4.2e-24 1
UNIPROTKB|E2RGA8 - symbol:CELF3 "Uncharacterized protein"... 281 5.8e-24 1
UNIPROTKB|E2RJG5 - symbol:CELF6 "Uncharacterized protein"... 276 6.5e-24 1
MGI|MGI:1923433 - symbol:Celf6 "CUGBP, Elav-like family m... 276 1.1e-23 1
RGD|1310451 - symbol:Celf6 "CUGBP, Elav-like family membe... 276 1.1e-23 1
UNIPROTKB|Q96J87 - symbol:CELF6 "CUGBP Elav-like family m... 276 1.3e-23 1
UNIPROTKB|E1B8K2 - symbol:CELF6 "Uncharacterized protein"... 276 1.3e-23 1
UNIPROTKB|F1SHM1 - symbol:CELF6 "Uncharacterized protein"... 276 1.3e-23 1
UNIPROTKB|F1SAI1 - symbol:CELF4 "Uncharacterized protein"... 266 4.8e-23 1
UNIPROTKB|F1SID9 - symbol:CELF1 "Uncharacterized protein"... 254 9.0e-22 1
UNIPROTKB|F1RUN0 - symbol:CELF2 "Uncharacterized protein"... 247 4.9e-21 1
UNIPROTKB|E1BIM7 - symbol:LOC100851458 "Uncharacterized p... 247 9.2e-21 1
UNIPROTKB|B4DIB6 - symbol:CELF2 "cDNA FLJ51739, highly si... 247 1.0e-20 1
UNIPROTKB|F1NZY6 - symbol:CELF2 "CUGBP Elav-like family m... 247 2.2e-20 1
UNIPROTKB|Q7T2T1 - symbol:CELF2 "CUGBP Elav-like family m... 247 2.2e-20 1
UNIPROTKB|E1C045 - symbol:CELF2 "CUGBP Elav-like family m... 247 2.3e-20 1
UNIPROTKB|F1P674 - symbol:CELF2 "Uncharacterized protein"... 247 2.3e-20 1
UNIPROTKB|F1P017 - symbol:CELF2 "CUGBP Elav-like family m... 247 2.4e-20 1
UNIPROTKB|Q5VZZ6 - symbol:CELF2 "CUGBP Elav-like family m... 247 2.4e-20 1
UNIPROTKB|O95319 - symbol:CELF2 "CUGBP Elav-like family m... 247 2.6e-20 1
MGI|MGI:1338822 - symbol:Celf2 "CUGBP, Elav-like family m... 247 2.6e-20 1
RGD|68347 - symbol:Celf2 "CUGBP, Elav-like family member ... 247 2.6e-20 1
UNIPROTKB|E9PC62 - symbol:CELF2 "CUGBP Elav-like family m... 247 2.8e-20 1
ZFIN|ZDB-GENE-030826-35 - symbol:celf2 "cugbp, Elav-like ... 246 4.7e-20 1
UNIPROTKB|F1ND14 - symbol:CELF1 "CUGBP Elav-like family m... 243 6.1e-20 1
UNIPROTKB|A7MB95 - symbol:CUGBP1 "Uncharacterized protein... 243 6.1e-20 1
UNIPROTKB|Q92879 - symbol:CELF1 "CUGBP Elav-like family m... 243 6.1e-20 1
MGI|MGI:1342295 - symbol:Celf1 "CUGBP, Elav-like family m... 243 6.1e-20 1
RGD|1307721 - symbol:Celf1 "CUGBP, Elav-like family membe... 243 6.2e-20 1
UNIPROTKB|Q4QQT3 - symbol:Celf1 "CUGBP Elav-like family m... 243 6.2e-20 1
UNIPROTKB|Q5F3T7 - symbol:CELF1 "CUGBP Elav-like family m... 243 6.3e-20 1
UNIPROTKB|E2R8F6 - symbol:CELF1 "Uncharacterized protein"... 243 7.2e-20 1
UNIPROTKB|Q5R995 - symbol:CELF1 "CUGBP Elav-like family m... 243 7.2e-20 1
UNIPROTKB|G5EA30 - symbol:CELF1 "CUG triplet repeat, RNA ... 243 7.2e-20 1
ZFIN|ZDB-GENE-000501-1 - symbol:celf1 "cugbp, Elav-like f... 241 1.3e-19 1
FB|FBgn0262475 - symbol:bru-2 "bruno-2" species:7227 "Dro... 244 1.7e-19 1
WB|WBGene00006807 - symbol:unc-75 species:6239 "Caenorhab... 239 2.0e-19 1
UNIPROTKB|K7EJD7 - symbol:CELF4 "CUGBP Elav-like family m... 230 3.1e-19 1
FB|FBgn0000114 - symbol:aret "arrest" species:7227 "Droso... 232 2.9e-18 1
UNIPROTKB|Q4R535 - symbol:CELF4 "CUGBP Elav-like family m... 209 1.2e-17 2
UNIPROTKB|A6H776 - symbol:BRUNOL4 "Uncharacterized protei... 209 1.2e-17 2
UNIPROTKB|Q9BZC1 - symbol:CELF4 "CUGBP Elav-like family m... 209 1.4e-17 2
UNIPROTKB|Q5NVC8 - symbol:CELF4 "CUGBP Elav-like family m... 209 1.4e-17 2
MGI|MGI:1932407 - symbol:Celf4 "CUGBP, Elav-like family m... 209 1.4e-17 2
UNIPROTKB|Q0V9L3 - symbol:celf4 "CUGBP Elav-like family m... 204 2.4e-17 2
UNIPROTKB|F1NXF6 - symbol:BRUNOL6 "Uncharacterized protei... 200 1.2e-16 2
UNIPROTKB|K7ERH1 - symbol:CELF4 "CUGBP Elav-like family m... 203 2.3e-16 1
UNIPROTKB|F1M3I9 - symbol:Brunol4 "Protein Brunol4" speci... 203 2.3e-16 1
UNIPROTKB|K7EJW4 - symbol:CELF4 "CUGBP Elav-like family m... 199 6.0e-16 1
WB|WBGene00001340 - symbol:etr-1 species:6239 "Caenorhabd... 186 1.4e-13 1
UNIPROTKB|K7EJ26 - symbol:CELF4 "CUGBP Elav-like family m... 164 3.1e-12 1
DICTYBASE|DDB_G0270634 - symbol:DDB_G0270634 "putative sp... 162 2.2e-11 1
TAIR|locus:2825067 - symbol:BRN2 "Bruno-like 2" species:3... 158 8.9e-11 1
TAIR|locus:2139340 - symbol:RBP-DR1 "RNA-binding protein-... 154 2.5e-10 1
UNIPROTKB|B4DHA8 - symbol:CELF4 "CUGBP Elav-like family m... 135 3.0e-08 1
ZFIN|ZDB-GENE-120215-101 - symbol:si:dkey-205h23.2 "si:dk... 126 3.3e-08 1
DICTYBASE|DDB_G0291486 - symbol:DDB_G0291486 "putative sp... 126 3.1e-07 1
GENEDB_PFALCIPARUM|MAL8P1.40 - symbol:MAL8P1.40 "RNA-bind... 112 4.0e-06 1
UNIPROTKB|Q8IB66 - symbol:MAL8P1.40 "RNA binding protein,... 112 4.0e-06 1
TAIR|locus:2160210 - symbol:RBP45A "RNA-binding protein 4... 79 6.0e-06 2
GENEDB_PFALCIPARUM|PFL1745c - symbol:PFL1745c "clustered-... 111 1.1e-05 1
UNIPROTKB|Q8I562 - symbol:PFL1745c "Clustered-asparagine-... 111 1.1e-05 1
UNIPROTKB|D4A288 - symbol:D4A288 "Uncharacterized protein... 101 6.8e-05 1
UNIPROTKB|E7EPF2 - symbol:RBMS1 "RNA-binding motif, singl... 94 8.1e-05 1
UNIPROTKB|F6W1U9 - symbol:RBMS2 "RNA-binding motif, singl... 94 8.1e-05 1
MGI|MGI:1861774 - symbol:Rbms1 "RNA binding motif, single... 102 9.1e-05 1
TAIR|locus:2116322 - symbol:ATRBP45C species:3702 "Arabid... 76 0.00020 2
DICTYBASE|DDB_G0270436 - symbol:DDB_G0270436 species:4468... 100 0.00022 1
RGD|1307777 - symbol:Rbms1 "RNA binding motif, single str... 98 0.00025 1
UNIPROTKB|Q5PQP1 - symbol:Rbms1 "RNA-binding motif, singl... 98 0.00025 1
UNIPROTKB|D4A6H0 - symbol:Rbms1 "RNA-binding motif, singl... 98 0.00025 1
UNIPROTKB|Q5U259 - symbol:elavl1-b "ELAV-like protein 1-B... 96 0.00029 1
UNIPROTKB|Q1JQ73 - symbol:elavl1-a "ELAV-like protein 1-A... 96 0.00031 1
POMBASE|SPBP22H7.02c - symbol:SPBP22H7.02c "RNA-binding p... 80 0.00031 2
UNIPROTKB|A4QUF0 - symbol:PAB1 "Polyadenylate-binding pro... 73 0.00033 2
ZFIN|ZDB-GENE-000210-17 - symbol:hug "HuG" species:7955 "... 96 0.00035 1
ZFIN|ZDB-GENE-030131-4967 - symbol:rbms1a "RNA binding mo... 96 0.00040 1
ZFIN|ZDB-GENE-040801-51 - symbol:rbms2b "RNA binding moti... 96 0.00040 1
WARNING: Descriptions of 26 database sequences were not reported due to the
limiting value of parameter V = 100.
>RGD|1307630 [details] [associations]
symbol:Celf4 "CUGBP, Elav-like family member 4" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1307630 GO:GO:0005634 GO:GO:0000166 GO:GO:0003729
Gene3D:3.30.70.330 GO:GO:0000380 GO:GO:0048026 GO:GO:0006376
GeneTree:ENSGT00560000076837 GO:GO:0000381 IPI:IPI00870309
Ensembl:ENSRNOT00000061151 ArrayExpress:F1M6I9 Uniprot:F1M6I9
Length = 355
Score = 297 (109.6 bits), Expect = 2.5e-26, P = 2.5e-26
Identities = 64/81 (79%), Positives = 65/81 (80%)
Query: 1 MFLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGF 60
MFLPFGNVISSKVF+DRATNQSKCFG FVSFDNPASA TAIQAMNGF
Sbjct: 289 MFLPFGNVISSKVFVDRATNQSKCFG--------------FVSFDNPASAQTAIQAMNGF 334
Query: 61 QIGMKRLKVQLKRPKDAARPY 81
QIGMKRLKVQLKRPKDA RPY
Sbjct: 335 QIGMKRLKVQLKRPKDANRPY 355
>FB|FBgn0264001 [details] [associations]
symbol:bru-3 "bruno-3" species:7227 "Drosophila melanogaster"
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IDA]
[GO:0017148 "negative regulation of translation" evidence=ISA]
[GO:0043234 "protein complex" evidence=IDA] [GO:0042803 "protein
homodimerization activity" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0043234 GO:GO:0042803 EMBL:AE014296 GO:GO:0017148
GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330 HSSP:P19339
KO:K13207 GeneTree:ENSGT00560000076837 FlyBase:FBgn0264001
UniGene:Dm.13624 GeneID:39527 KEGG:dme:Dmel_CG12478 CTD:39527
GenomeRNAi:39527 NextBio:814113 EMBL:AY060398 RefSeq:NP_729923.1
SMR:Q9VU91 IntAct:Q9VU91 MINT:MINT-899406 STRING:Q9VU91
EnsemblMetazoa:FBtr0330343 UCSC:CG12478-RA InParanoid:Q9VU91
OMA:HALNGEY Uniprot:Q9VU91
Length = 422
Score = 296 (109.3 bits), Expect = 3.2e-26, P = 3.2e-26
Identities = 64/81 (79%), Positives = 65/81 (80%)
Query: 1 MFLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGF 60
MFLPFGNVISSKVFIDRATNQSKCFG FVSFDNPASA AIQAMNGF
Sbjct: 356 MFLPFGNVISSKVFIDRATNQSKCFG--------------FVSFDNPASAQAAIQAMNGF 401
Query: 61 QIGMKRLKVQLKRPKDAARPY 81
QIGMKRLKVQLKRPKDA+RPY
Sbjct: 402 QIGMKRLKVQLKRPKDASRPY 422
>ZFIN|ZDB-GENE-110408-50 [details] [associations]
symbol:celf3b "cugbp, Elav-like family member 3b"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-110408-50 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00560000076837
EMBL:BX005277 EMBL:CABZ01052818 EMBL:CABZ01052819 EMBL:CABZ01052820
EMBL:CABZ01052821 EMBL:CABZ01052822 IPI:IPI00506596
Ensembl:ENSDART00000024206 Uniprot:E7F293
Length = 442
Score = 294 (108.6 bits), Expect = 6.7e-26, P = 6.7e-26
Identities = 63/81 (77%), Positives = 65/81 (80%)
Query: 1 MFLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGF 60
MFLPFGNVIS+KVF+DRATNQSKCFG FVSFDNPASA TAIQAMNGF
Sbjct: 376 MFLPFGNVISAKVFVDRATNQSKCFG--------------FVSFDNPASAQTAIQAMNGF 421
Query: 61 QIGMKRLKVQLKRPKDAARPY 81
QIGMKRLKVQLKRPKDA RPY
Sbjct: 422 QIGMKRLKVQLKRPKDANRPY 442
>UNIPROTKB|F1NYP4 [details] [associations]
symbol:CELF4 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00560000076837 OMA:EDSEKNG EMBL:AADN02067588
EMBL:AADN02067589 EMBL:AADN02067590 EMBL:AADN02067591
EMBL:AADN02067592 EMBL:AADN02067593 EMBL:AADN02067594
EMBL:AADN02067595 EMBL:AADN02067596 IPI:IPI00590965
Ensembl:ENSGALT00000003800 Uniprot:F1NYP4
Length = 361
Score = 292 (107.8 bits), Expect = 8.4e-26, P = 8.4e-26
Identities = 63/81 (77%), Positives = 64/81 (79%)
Query: 1 MFLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGF 60
MFLPFGNVISSKVF+DRATNQSKCFG FVSFDNPASA AIQAMNGF
Sbjct: 295 MFLPFGNVISSKVFVDRATNQSKCFG--------------FVSFDNPASAQAAIQAMNGF 340
Query: 61 QIGMKRLKVQLKRPKDAARPY 81
QIGMKRLKVQLKRPKDA RPY
Sbjct: 341 QIGMKRLKVQLKRPKDANRPY 361
>ZFIN|ZDB-GENE-000501-2 [details] [associations]
symbol:celf3a "cugbp, Elav-like family member 3a"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0048026 "positive regulation of mRNA splicing, via spliceosome"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-000501-2 GO:GO:0005634 GO:GO:0005737
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
HSSP:Q92879 HOVERGEN:HBG107646 KO:K13207 GO:GO:0048026
eggNOG:NOG251494 HOGENOM:HOG000004754 GeneTree:ENSGT00560000076837
EMBL:AB032725 EMBL:BX248499 EMBL:BC060923 IPI:IPI00504951
RefSeq:NP_571569.2 UniGene:Dr.8323 ProteinModelPortal:Q9IBD1
SMR:Q9IBD1 Ensembl:ENSDART00000039629 GeneID:57922 KEGG:dre:57922
CTD:57922 OMA:MQHYTAT OrthoDB:EOG4RJG30 NextBio:20891938
Bgee:Q9IBD1 Uniprot:Q9IBD1
Length = 452
Score = 289 (106.8 bits), Expect = 3.2e-25, P = 3.2e-25
Identities = 62/81 (76%), Positives = 64/81 (79%)
Query: 1 MFLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGF 60
MFLPFGNVIS+KVF+DRATNQSKCFG FVSFDNPASA AIQAMNGF
Sbjct: 386 MFLPFGNVISAKVFVDRATNQSKCFG--------------FVSFDNPASAQAAIQAMNGF 431
Query: 61 QIGMKRLKVQLKRPKDAARPY 81
QIGMKRLKVQLKRPKDA RPY
Sbjct: 432 QIGMKRLKVQLKRPKDANRPY 452
>UNIPROTKB|F1S8E8 [details] [associations]
symbol:CELF5 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00560000076837 OMA:DGMKDLD EMBL:FP016150
EMBL:FP565386 Ensembl:ENSSSCT00000014721 Uniprot:F1S8E8
Length = 420
Score = 286 (105.7 bits), Expect = 3.6e-25, P = 3.6e-25
Identities = 61/81 (75%), Positives = 63/81 (77%)
Query: 1 MFLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGF 60
MFLPFGN+ISSKVF+DRATNQSKCFG FVSFDNPASA TAIQAMNGF
Sbjct: 354 MFLPFGNIISSKVFMDRATNQSKCFG--------------FVSFDNPASAQTAIQAMNGF 399
Query: 61 QIGMKRLKVQLKRPKDAARPY 81
QIGMKRLKVQLKRPKD PY
Sbjct: 400 QIGMKRLKVQLKRPKDPGHPY 420
>UNIPROTKB|F1P5J4 [details] [associations]
symbol:BRUNOL6 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00560000076837 EMBL:AADN02051058 EMBL:AADN02051059
IPI:IPI00591656 Ensembl:ENSGALT00000003051 Uniprot:F1P5J4
Length = 354
Score = 285 (105.4 bits), Expect = 4.6e-25, P = 4.6e-25
Identities = 61/81 (75%), Positives = 63/81 (77%)
Query: 1 MFLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGF 60
MFLPFGNVIS+KVF+DRATNQSKCFG FVSFDNP SA AIQAMNGF
Sbjct: 288 MFLPFGNVISAKVFVDRATNQSKCFG--------------FVSFDNPTSAQAAIQAMNGF 333
Query: 61 QIGMKRLKVQLKRPKDAARPY 81
QIGMKRLKVQLKRPKDA RPY
Sbjct: 334 QIGMKRLKVQLKRPKDANRPY 354
>UNIPROTKB|Q91579 [details] [associations]
symbol:tnrc4-a "CUGBP Elav-like family member 3-A"
species:8355 "Xenopus laevis" [GO:0048026 "positive regulation of
mRNA splicing, via spliceosome" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:U16800 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:BC057704 EMBL:BC072134
RefSeq:NP_001079936.1 UniGene:Xl.986 HSSP:Q92879
ProteinModelPortal:Q91579 SMR:Q91579 GeneID:379627 KEGG:xla:379627
CTD:379627 Xenbase:XB-GENE-6255196 HOVERGEN:HBG107646 KO:K13207
GO:GO:0048026 Uniprot:Q91579
Length = 462
Score = 285 (105.4 bits), Expect = 1.0e-24, P = 1.0e-24
Identities = 61/81 (75%), Positives = 63/81 (77%)
Query: 1 MFLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGF 60
MFLPFGNVIS+KVF+DRATNQSKCFG FVSFDNP SA AIQAMNGF
Sbjct: 396 MFLPFGNVISAKVFVDRATNQSKCFG--------------FVSFDNPGSAQAAIQAMNGF 441
Query: 61 QIGMKRLKVQLKRPKDAARPY 81
QIGMKRLKVQLKRPKDA RPY
Sbjct: 442 QIGMKRLKVQLKRPKDANRPY 462
>UNIPROTKB|F1PXQ8 [details] [associations]
symbol:CELF5 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K13207
GeneTree:ENSGT00560000076837 CTD:60680 OMA:DGMKDLD
EMBL:AAEX03012581 RefSeq:XP_854891.3 Ensembl:ENSCAFT00000030591
GeneID:612072 KEGG:cfa:612072 Uniprot:F1PXQ8
Length = 485
Score = 286 (105.7 bits), Expect = 1.1e-24, P = 1.1e-24
Identities = 61/81 (75%), Positives = 63/81 (77%)
Query: 1 MFLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGF 60
MFLPFGN+ISSKVF+DRATNQSKCFG FVSFDNPASA TAIQAMNGF
Sbjct: 419 MFLPFGNIISSKVFMDRATNQSKCFG--------------FVSFDNPASAQTAIQAMNGF 464
Query: 61 QIGMKRLKVQLKRPKDAARPY 81
QIGMKRLKVQLKRPKD PY
Sbjct: 465 QIGMKRLKVQLKRPKDPGHPY 485
>UNIPROTKB|F1MD42 [details] [associations]
symbol:F1MD42 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00560000076837 EMBL:DAAA02019657 EMBL:DAAA02019658
EMBL:DAAA02019659 EMBL:DAAA02019660 EMBL:DAAA02019661
IPI:IPI00713955 ProteinModelPortal:F1MD42
Ensembl:ENSBTAT00000029023 OMA:PAQSPTM Uniprot:F1MD42
Length = 489
Score = 286 (105.7 bits), Expect = 1.1e-24, P = 1.1e-24
Identities = 61/81 (75%), Positives = 63/81 (77%)
Query: 1 MFLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGF 60
MFLPFGN+ISSKVF+DRATNQSKCFG FVSFDNPASA TAIQAMNGF
Sbjct: 423 MFLPFGNIISSKVFMDRATNQSKCFG--------------FVSFDNPASAQTAIQAMNGF 468
Query: 61 QIGMKRLKVQLKRPKDAARPY 81
QIGMKRLKVQLKRPKD PY
Sbjct: 469 QIGMKRLKVQLKRPKDPGHPY 489
>UNIPROTKB|B4DQL3 [details] [associations]
symbol:CELF3 "CUGBP Elav-like family member 3" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HOVERGEN:HBG107646
HOGENOM:HOG000004754 EMBL:AL589765 UniGene:Hs.26047 HGNC:HGNC:11967
EMBL:AK298852 IPI:IPI00909704 SMR:B4DQL3 STRING:B4DQL3
Ensembl:ENST00000392706 UCSC:uc010pdh.2 Uniprot:B4DQL3
Length = 260
Score = 281 (104.0 bits), Expect = 1.2e-24, P = 1.2e-24
Identities = 60/81 (74%), Positives = 64/81 (79%)
Query: 1 MFLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGF 60
MF+PFG+VIS+KVF+DRATNQSKCFG FVSFDNPASA AIQAMNGF
Sbjct: 194 MFVPFGHVISAKVFVDRATNQSKCFG--------------FVSFDNPASAQAAIQAMNGF 239
Query: 61 QIGMKRLKVQLKRPKDAARPY 81
QIGMKRLKVQLKRPKDA RPY
Sbjct: 240 QIGMKRLKVQLKRPKDANRPY 260
>UNIPROTKB|Q5SZQ7 [details] [associations]
symbol:CELF3 "CUGBP Elav-like family member 3" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:CH471121
HOVERGEN:HBG107646 KO:K13207 HOGENOM:HOG000004754 CTD:11189
EMBL:AL589765 UniGene:Hs.26047 PDB:2DNO PDBsum:2DNO GeneID:11189
KEGG:hsa:11189 HGNC:HGNC:11967 PharmGKB:PA36654 GenomeRNAi:11189
NextBio:42591 IPI:IPI00386736 RefSeq:NP_001166120.1 SMR:Q5SZQ7
STRING:Q5SZQ7 Ensembl:ENST00000290585 UCSC:uc009wmy.3
EvolutionaryTrace:Q5SZQ7 Uniprot:Q5SZQ7
Length = 415
Score = 281 (104.0 bits), Expect = 1.3e-24, P = 1.3e-24
Identities = 60/81 (74%), Positives = 64/81 (79%)
Query: 1 MFLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGF 60
MF+PFG+VIS+KVF+DRATNQSKCFG FVSFDNPASA AIQAMNGF
Sbjct: 349 MFVPFGHVISAKVFVDRATNQSKCFG--------------FVSFDNPASAQAAIQAMNGF 394
Query: 61 QIGMKRLKVQLKRPKDAARPY 81
QIGMKRLKVQLKRPKDA RPY
Sbjct: 395 QIGMKRLKVQLKRPKDANRPY 415
>ZFIN|ZDB-GENE-050208-746 [details] [associations]
symbol:celf5 "cugbp, Elav-like family member 5"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-050208-746 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00560000076837
EMBL:BX510913 EMBL:AL929135 EMBL:BX664613 IPI:IPI00633183
Ensembl:ENSDART00000093310 Bgee:F1R633 Uniprot:F1R633
Length = 597
Score = 287 (106.1 bits), Expect = 1.8e-24, P = 1.8e-24
Identities = 62/81 (76%), Positives = 64/81 (79%)
Query: 1 MFLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGF 60
MFLPFG VISSKVF+DRATNQSKCFG FVSFDNPASA AIQAMNGF
Sbjct: 531 MFLPFGTVISSKVFMDRATNQSKCFG--------------FVSFDNPASAQAAIQAMNGF 576
Query: 61 QIGMKRLKVQLKRPKDAARPY 81
QIGMKRLKVQLKRPKDA+RPY
Sbjct: 577 QIGMKRLKVQLKRPKDASRPY 597
>ZFIN|ZDB-GENE-040718-300 [details] [associations]
symbol:celf4 "CUGBP, Elav-like family member 4"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0048026 "positive regulation of mRNA splicing, via spliceosome"
evidence=ISS] [GO:0003723 "RNA binding" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-040718-300 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 HSSP:Q92879
HOVERGEN:HBG107646 KO:K13207 GO:GO:0048026 eggNOG:NOG251494
HOGENOM:HOG000004754 OrthoDB:EOG4RJG30 EMBL:BC076238
IPI:IPI00491989 RefSeq:NP_001002562.1 UniGene:Dr.81398
ProteinModelPortal:Q6DGV1 SMR:Q6DGV1 GeneID:436835 KEGG:dre:436835
CTD:56853 InParanoid:Q6DGV1 NextBio:20831267 ArrayExpress:Q6DGV1
Bgee:Q6DGV1 Uniprot:Q6DGV1
Length = 520
Score = 285 (105.4 bits), Expect = 1.9e-24, P = 1.9e-24
Identities = 61/81 (75%), Positives = 63/81 (77%)
Query: 1 MFLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGF 60
MFLPFGNVISSKVF+DRATNQSKCFG FVSFDNP SA AIQ+MNGF
Sbjct: 454 MFLPFGNVISSKVFVDRATNQSKCFG--------------FVSFDNPGSAQAAIQSMNGF 499
Query: 61 QIGMKRLKVQLKRPKDAARPY 81
QIGMKRLKVQLKRPKDA RPY
Sbjct: 500 QIGMKRLKVQLKRPKDANRPY 520
>UNIPROTKB|Q7ZWM3 [details] [associations]
symbol:tnrc4-b "CUGBP Elav-like family member 3-B"
species:8355 "Xenopus laevis" [GO:0048026 "positive regulation of
mRNA splicing, via spliceosome" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 HSSP:Q92879 HOVERGEN:HBG107646
KO:K13207 GO:GO:0048026 EMBL:BC046942 RefSeq:NP_001080695.1
UniGene:Xl.12160 ProteinModelPortal:Q7ZWM3 SMR:Q7ZWM3 GeneID:380387
KEGG:xla:380387 CTD:380387 Xenbase:XB-GENE-5796640 Uniprot:Q7ZWM3
Length = 462
Score = 282 (104.3 bits), Expect = 2.3e-24, P = 2.3e-24
Identities = 60/81 (74%), Positives = 63/81 (77%)
Query: 1 MFLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGF 60
MFLPFGNVIS+KVF+DRATNQSKCFG FVSFDNP SA AIQ+MNGF
Sbjct: 396 MFLPFGNVISAKVFVDRATNQSKCFG--------------FVSFDNPGSAQAAIQSMNGF 441
Query: 61 QIGMKRLKVQLKRPKDAARPY 81
QIGMKRLKVQLKRPKDA RPY
Sbjct: 442 QIGMKRLKVQLKRPKDANRPY 462
>UNIPROTKB|Q08E07 [details] [associations]
symbol:CELF3 "CUGBP Elav-like family member 3" species:9913
"Bos taurus" [GO:0048026 "positive regulation of mRNA splicing, via
spliceosome" evidence=ISS] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0030317 "sperm motility"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0007283
"spermatogenesis" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0007283
GO:GO:0003723 GO:GO:0030317 HOVERGEN:HBG107646 KO:K13207
GO:GO:0048026 eggNOG:NOG251494 HOGENOM:HOG000004754
GeneTree:ENSGT00560000076837 EMBL:BC123480 IPI:IPI00690976
RefSeq:NP_001070313.1 UniGene:Bt.18201 ProteinModelPortal:Q08E07
SMR:Q08E07 PRIDE:Q08E07 Ensembl:ENSBTAT00000033848 GeneID:513347
KEGG:bta:513347 CTD:11189 InParanoid:Q08E07 OMA:HSAYLNP
NextBio:20870823 ArrayExpress:Q08E07 GO:GO:0000381 Uniprot:Q08E07
Length = 461
Score = 281 (104.0 bits), Expect = 3.0e-24, P = 3.0e-24
Identities = 60/81 (74%), Positives = 64/81 (79%)
Query: 1 MFLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGF 60
MF+PFG+VIS+KVF+DRATNQSKCFG FVSFDNPASA AIQAMNGF
Sbjct: 395 MFVPFGHVISAKVFVDRATNQSKCFG--------------FVSFDNPASAQAAIQAMNGF 440
Query: 61 QIGMKRLKVQLKRPKDAARPY 81
QIGMKRLKVQLKRPKDA RPY
Sbjct: 441 QIGMKRLKVQLKRPKDANRPY 461
>UNIPROTKB|Q5SZQ8 [details] [associations]
symbol:CELF3 "CUGBP Elav-like family member 3" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0007283 "spermatogenesis" evidence=IEA] [GO:0030317 "sperm
motility" evidence=IEA] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=NAS] [GO:0003729 "mRNA binding" evidence=NAS]
[GO:0005634 "nucleus" evidence=IDA;NAS] [GO:0003723 "RNA binding"
evidence=IMP] [GO:0008380 "RNA splicing" evidence=IMP] [GO:0000381
"regulation of alternative mRNA splicing, via spliceosome"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0048026
"positive regulation of mRNA splicing, via spliceosome"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0005737
GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0007283
GO:GO:0030317 GO:GO:0000398 HOVERGEN:HBG107646 KO:K13207
GO:GO:0048026 eggNOG:NOG251494 CTD:11189 GO:GO:0000381
OrthoDB:EOG4RJG30 EMBL:AF329264 EMBL:AY165003 EMBL:AL589765
EMBL:BC052491 EMBL:BC068008 EMBL:BC104758 EMBL:BC143226 EMBL:U80746
EMBL:AF284423 IPI:IPI00852836 IPI:IPI00852895 IPI:IPI00852999
RefSeq:NP_009116.3 UniGene:Hs.26047 PDB:2DNO PDBsum:2DNO
ProteinModelPortal:Q5SZQ8 SMR:Q5SZQ8 IntAct:Q5SZQ8
MINT:MINT-4866187 STRING:Q5SZQ8 PhosphoSite:Q5SZQ8 DMDM:74756184
PRIDE:Q5SZQ8 Ensembl:ENST00000290583 GeneID:11189 KEGG:hsa:11189
UCSC:uc001eyr.3 UCSC:uc001eys.2 UCSC:uc009wmx.2
GeneCards:GC01M151674 HGNC:HGNC:11967 HPA:HPA006292 MIM:612678
neXtProt:NX_Q5SZQ8 PharmGKB:PA36654 PhylomeDB:Q5SZQ8
EvolutionaryTrace:Q5SZQ8 GenomeRNAi:11189 NextBio:42591
ArrayExpress:Q5SZQ8 Bgee:Q5SZQ8 CleanEx:HS_TNRC4
Genevestigator:Q5SZQ8 Uniprot:Q5SZQ8
Length = 465
Score = 281 (104.0 bits), Expect = 3.1e-24, P = 3.1e-24
Identities = 60/81 (74%), Positives = 64/81 (79%)
Query: 1 MFLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGF 60
MF+PFG+VIS+KVF+DRATNQSKCFG FVSFDNPASA AIQAMNGF
Sbjct: 399 MFVPFGHVISAKVFVDRATNQSKCFG--------------FVSFDNPASAQAAIQAMNGF 444
Query: 61 QIGMKRLKVQLKRPKDAARPY 81
QIGMKRLKVQLKRPKDA RPY
Sbjct: 445 QIGMKRLKVQLKRPKDANRPY 465
>UNIPROTKB|F1ST15 [details] [associations]
symbol:CELF3 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0048026 "positive regulation of mRNA splicing, via
spliceosome" evidence=IEA] [GO:0030317 "sperm motility"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0007283
"spermatogenesis" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0000381 "regulation of alternative mRNA
splicing, via spliceosome" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0005737 GO:GO:0008380 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0007283 GO:GO:0003723 GO:GO:0030317 GO:GO:0048026
GeneTree:ENSGT00560000076837 OMA:HSAYLNP GO:GO:0000381
EMBL:CU457723 Ensembl:ENSSSCT00000007252 Uniprot:F1ST15
Length = 465
Score = 281 (104.0 bits), Expect = 3.1e-24, P = 3.1e-24
Identities = 60/81 (74%), Positives = 64/81 (79%)
Query: 1 MFLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGF 60
MF+PFG+VIS+KVF+DRATNQSKCFG FVSFDNPASA AIQAMNGF
Sbjct: 399 MFVPFGHVISAKVFVDRATNQSKCFG--------------FVSFDNPASAQAAIQAMNGF 444
Query: 61 QIGMKRLKVQLKRPKDAARPY 81
QIGMKRLKVQLKRPKDA RPY
Sbjct: 445 QIGMKRLKVQLKRPKDANRPY 465
>MGI|MGI:1926034 [details] [associations]
symbol:Celf3 "CUGBP, Elav-like family member 3"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=ISO] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISO] [GO:0005634
"nucleus" evidence=ISO;IDA] [GO:0005737 "cytoplasm"
evidence=ISO;IDA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0007283 "spermatogenesis" evidence=IMP] [GO:0008380 "RNA
splicing" evidence=ISO] [GO:0030317 "sperm motility" evidence=IMP]
[GO:0048026 "positive regulation of mRNA splicing, via spliceosome"
evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 MGI:MGI:1926034 GO:GO:0005634
GO:GO:0005737 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0007283 GO:GO:0003723 GO:GO:0030317
HSSP:Q92879 HOVERGEN:HBG107646 KO:K13207 GO:GO:0048026
eggNOG:NOG251494 HOGENOM:HOG000004754 GeneTree:ENSGT00560000076837
CTD:11189 OMA:HSAYLNP GO:GO:0000381 OrthoDB:EOG4RJG30 EMBL:AY165052
EMBL:BC057553 IPI:IPI00461847 IPI:IPI00854025 RefSeq:NP_766022.1
UniGene:Mm.44292 ProteinModelPortal:Q8CIN6 SMR:Q8CIN6 STRING:Q8CIN6
PhosphoSite:Q8CIN6 PaxDb:Q8CIN6 PRIDE:Q8CIN6
Ensembl:ENSMUST00000029784 GeneID:78784 KEGG:mmu:78784
UCSC:uc008qgl.1 UCSC:uc008qgm.1 InParanoid:Q8CIN6 NextBio:349492
Bgee:Q8CIN6 CleanEx:MM_TNRC4 Genevestigator:Q8CIN6 Uniprot:Q8CIN6
Length = 465
Score = 281 (104.0 bits), Expect = 3.1e-24, P = 3.1e-24
Identities = 60/81 (74%), Positives = 64/81 (79%)
Query: 1 MFLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGF 60
MF+PFG+VIS+KVF+DRATNQSKCFG FVSFDNPASA AIQAMNGF
Sbjct: 399 MFVPFGHVISAKVFVDRATNQSKCFG--------------FVSFDNPASAQAAIQAMNGF 444
Query: 61 QIGMKRLKVQLKRPKDAARPY 81
QIGMKRLKVQLKRPKDA RPY
Sbjct: 445 QIGMKRLKVQLKRPKDANRPY 465
>UNIPROTKB|H0Y623 [details] [associations]
symbol:CELF3 "CUGBP Elav-like family member 3" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 OMA:HSAYLNP
EMBL:AL589765 HGNC:HGNC:11967 ProteinModelPortal:H0Y623
PRIDE:H0Y623 Ensembl:ENST00000420342 Bgee:H0Y623 Uniprot:H0Y623
Length = 466
Score = 281 (104.0 bits), Expect = 3.1e-24, P = 3.1e-24
Identities = 60/81 (74%), Positives = 64/81 (79%)
Query: 1 MFLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGF 60
MF+PFG+VIS+KVF+DRATNQSKCFG FVSFDNPASA AIQAMNGF
Sbjct: 400 MFVPFGHVISAKVFVDRATNQSKCFG--------------FVSFDNPASAQAAIQAMNGF 445
Query: 61 QIGMKRLKVQLKRPKDAARPY 81
QIGMKRLKVQLKRPKDA RPY
Sbjct: 446 QIGMKRLKVQLKRPKDANRPY 466
>UNIPROTKB|Q8N6W0 [details] [associations]
symbol:CELF5 "CUGBP Elav-like family member 5" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:CH471139 HOVERGEN:HBG107646
KO:K13207 eggNOG:NOG251494 OrthoDB:EOG4RJG30 EMBL:AB209067
EMBL:AC005331 EMBL:AC006505 EMBL:AC010649 EMBL:AC123911
EMBL:BC028101 EMBL:AF329266 EMBL:AF248649 IPI:IPI00171157
IPI:IPI00853054 RefSeq:NP_001166144.1 RefSeq:NP_068757.2
UniGene:Hs.655747 PDB:2DNH PDBsum:2DNH ProteinModelPortal:Q8N6W0
SMR:Q8N6W0 STRING:Q8N6W0 PhosphoSite:Q8N6W0 DMDM:74762534
PRIDE:Q8N6W0 DNASU:60680 Ensembl:ENST00000292672
Ensembl:ENST00000541430 GeneID:60680 KEGG:hsa:60680 UCSC:uc002lxl.2
UCSC:uc010dtj.2 CTD:60680 GeneCards:GC19P003224 HGNC:HGNC:14058
HPA:HPA042012 MIM:612680 neXtProt:NX_Q8N6W0 PharmGKB:PA25429
InParanoid:Q8N6W0 OMA:DGMKDLD PhylomeDB:Q8N6W0
EvolutionaryTrace:Q8N6W0 GenomeRNAi:60680 NextBio:65500
ArrayExpress:Q8N6W0 Bgee:Q8N6W0 CleanEx:HS_BRUNOL5
Genevestigator:Q8N6W0 Uniprot:Q8N6W0
Length = 485
Score = 281 (104.0 bits), Expect = 3.8e-24, P = 3.8e-24
Identities = 60/81 (74%), Positives = 62/81 (76%)
Query: 1 MFLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGF 60
MFLPFGN+ISSKVF+DRATNQSKCFG FVSFDNPASA AIQAMNGF
Sbjct: 419 MFLPFGNIISSKVFMDRATNQSKCFG--------------FVSFDNPASAQAAIQAMNGF 464
Query: 61 QIGMKRLKVQLKRPKDAARPY 81
QIGMKRLKVQLKRPKD PY
Sbjct: 465 QIGMKRLKVQLKRPKDPGHPY 485
>UNIPROTKB|B3KWE6 [details] [associations]
symbol:BRUNOL6 "cDNA FLJ42868 fis, clone BRHIP2021615,
highly similar to Homo sapiens bruno-like 6, RNA binding protein,
mRNA" species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:CH471082 HOVERGEN:HBG107646 HOGENOM:HOG000004754 EMBL:AC009690
UniGene:Hs.348342 HGNC:HGNC:14059 EMBL:AK124858 IPI:IPI01012509
SMR:B3KWE6 STRING:B3KWE6 Ensembl:ENST00000539635 Uniprot:B3KWE6
Length = 342
Score = 276 (102.2 bits), Expect = 4.2e-24, P = 4.2e-24
Identities = 59/80 (73%), Positives = 62/80 (77%)
Query: 2 FLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQ 61
FLPFG V+S+KVF+DRATNQSKCFG FVSFDNP SA TAIQAMNGFQ
Sbjct: 277 FLPFGAVVSAKVFVDRATNQSKCFG--------------FVSFDNPTSAQTAIQAMNGFQ 322
Query: 62 IGMKRLKVQLKRPKDAARPY 81
IGMKRLKVQLKRPKDA RPY
Sbjct: 323 IGMKRLKVQLKRPKDANRPY 342
>RGD|1563168 [details] [associations]
symbol:Celf3 "CUGBP, Elav-like family member 3" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=ISO] [GO:0003674 "molecular_function"
evidence=ND] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISO] [GO:0005575
"cellular_component" evidence=ND] [GO:0005634 "nucleus"
evidence=ISO] [GO:0005737 "cytoplasm" evidence=ISO] [GO:0007283
"spermatogenesis" evidence=ISO] [GO:0008150 "biological_process"
evidence=ND] [GO:0008380 "RNA splicing" evidence=ISO] [GO:0030317
"sperm motility" evidence=ISO] [GO:0048026 "positive regulation of
mRNA splicing, via spliceosome" evidence=ISO] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1563168 GO:GO:0005634 GO:GO:0005737 GO:GO:0008380 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0007283 GO:GO:0003723 GO:GO:0030317
GO:GO:0048026 GeneTree:ENSGT00560000076837 GO:GO:0000381
OrthoDB:EOG4RJG30 EMBL:AC133978 IPI:IPI00204869
ProteinModelPortal:D4A916 Ensembl:ENSRNOT00000028324
UCSC:RGD:1563168 Uniprot:D4A916
Length = 494
Score = 281 (104.0 bits), Expect = 4.2e-24, P = 4.2e-24
Identities = 60/81 (74%), Positives = 64/81 (79%)
Query: 1 MFLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGF 60
MF+PFG+VIS+KVF+DRATNQSKCFG FVSFDNPASA AIQAMNGF
Sbjct: 428 MFVPFGHVISAKVFVDRATNQSKCFG--------------FVSFDNPASAQAAIQAMNGF 473
Query: 61 QIGMKRLKVQLKRPKDAARPY 81
QIGMKRLKVQLKRPKDA RPY
Sbjct: 474 QIGMKRLKVQLKRPKDANRPY 494
>UNIPROTKB|E2RGA8 [details] [associations]
symbol:CELF3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00560000076837 OMA:HSAYLNP EMBL:AAEX03011056
Ensembl:ENSCAFT00000020318 Uniprot:E2RGA8
Length = 539
Score = 281 (104.0 bits), Expect = 5.8e-24, P = 5.8e-24
Identities = 60/81 (74%), Positives = 64/81 (79%)
Query: 1 MFLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGF 60
MF+PFG+VIS+KVF+DRATNQSKCFG FVSFDNPASA AIQAMNGF
Sbjct: 473 MFVPFGHVISAKVFVDRATNQSKCFG--------------FVSFDNPASAQAAIQAMNGF 518
Query: 61 QIGMKRLKVQLKRPKDAARPY 81
QIGMKRLKVQLKRPKDA RPY
Sbjct: 519 QIGMKRLKVQLKRPKDANRPY 539
>UNIPROTKB|E2RJG5 [details] [associations]
symbol:CELF6 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00560000076837 OMA:MQHVAAF EMBL:AAEX03016277
EMBL:AAEX03016278 Ensembl:ENSCAFT00000028069 Uniprot:E2RJG5
Length = 427
Score = 276 (102.2 bits), Expect = 6.5e-24, P = 6.5e-24
Identities = 59/80 (73%), Positives = 62/80 (77%)
Query: 2 FLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQ 61
FLPFG V+S+KVF+DRATNQSKCFG FVSFDNP SA TAIQAMNGFQ
Sbjct: 362 FLPFGAVVSAKVFVDRATNQSKCFG--------------FVSFDNPTSAQTAIQAMNGFQ 407
Query: 62 IGMKRLKVQLKRPKDAARPY 81
IGMKRLKVQLKRPKDA RPY
Sbjct: 408 IGMKRLKVQLKRPKDANRPY 427
>MGI|MGI:1923433 [details] [associations]
symbol:Celf6 "CUGBP, Elav-like family member 6"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=ISO] [GO:0003674 "molecular_function"
evidence=ND] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
MGI:MGI:1923433 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 HSSP:Q92879
HOVERGEN:HBG107646 KO:K13207 eggNOG:NOG251494 HOGENOM:HOG000004754
GeneTree:ENSGT00560000076837 GO:GO:0000381 OrthoDB:EOG4RJG30
CTD:60677 EMBL:AK034216 EMBL:BC052406 EMBL:BC057083 IPI:IPI00222250
IPI:IPI00853853 RefSeq:NP_780444.2 UniGene:Mm.265415
ProteinModelPortal:Q7TN33 SMR:Q7TN33 PhosphoSite:Q7TN33
PRIDE:Q7TN33 Ensembl:ENSMUST00000034840 Ensembl:ENSMUST00000121266
GeneID:76183 KEGG:mmu:76183 UCSC:uc009pxx.1 UCSC:uc009pxy.1
NextBio:344727 Bgee:Q7TN33 CleanEx:MM_BRUNOL6 Genevestigator:Q7TN33
Uniprot:Q7TN33
Length = 460
Score = 276 (102.2 bits), Expect = 1.1e-23, P = 1.1e-23
Identities = 59/80 (73%), Positives = 62/80 (77%)
Query: 2 FLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQ 61
FLPFG V+S+KVF+DRATNQSKCFG FVSFDNP SA TAIQAMNGFQ
Sbjct: 395 FLPFGAVVSAKVFVDRATNQSKCFG--------------FVSFDNPTSAQTAIQAMNGFQ 440
Query: 62 IGMKRLKVQLKRPKDAARPY 81
IGMKRLKVQLKRPKDA RPY
Sbjct: 441 IGMKRLKVQLKRPKDANRPY 460
>RGD|1310451 [details] [associations]
symbol:Celf6 "CUGBP, Elav-like family member 6" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=IEA;ISO] [GO:0003674 "molecular_function"
evidence=ND] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1310451 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00560000076837 GO:GO:0000381 OrthoDB:EOG4RJG30
OMA:MQHVAAF IPI:IPI00369994 Ensembl:ENSRNOT00000014450
UCSC:RGD:1310451 Uniprot:D4ABS9
Length = 460
Score = 276 (102.2 bits), Expect = 1.1e-23, P = 1.1e-23
Identities = 59/80 (73%), Positives = 62/80 (77%)
Query: 2 FLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQ 61
FLPFG V+S+KVF+DRATNQSKCFG FVSFDNP SA TAIQAMNGFQ
Sbjct: 395 FLPFGAVVSAKVFVDRATNQSKCFG--------------FVSFDNPTSAQTAIQAMNGFQ 440
Query: 62 IGMKRLKVQLKRPKDAARPY 81
IGMKRLKVQLKRPKDA RPY
Sbjct: 441 IGMKRLKVQLKRPKDANRPY 460
>UNIPROTKB|Q96J87 [details] [associations]
symbol:CELF6 "CUGBP Elav-like family member 6" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0005634 "nucleus"
evidence=NAS] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=IDA] [GO:0003723 "RNA binding"
evidence=NAS] [GO:0005737 "cytoplasm" evidence=NAS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 HOVERGEN:HBG107646
KO:K13207 eggNOG:NOG251494 HOGENOM:HOG000004754 GO:GO:0000381
OrthoDB:EOG4RJG30 EMBL:AF401233 EMBL:AF425606 EMBL:AK131098
EMBL:AK294382 EMBL:AK296004 EMBL:AC009690 EMBL:BC030835
EMBL:BC033838 IPI:IPI00171103 IPI:IPI00793692 IPI:IPI00909307
IPI:IPI00922660 RefSeq:NP_001166155.1 RefSeq:NP_001166156.1
RefSeq:NP_443072.3 UniGene:Hs.348342 PDB:2DGQ PDBsum:2DGQ
ProteinModelPortal:Q96J87 SMR:Q96J87 STRING:Q96J87
PhosphoSite:Q96J87 DMDM:74760888 PRIDE:Q96J87
Ensembl:ENST00000287202 Ensembl:ENST00000395258
Ensembl:ENST00000543764 Ensembl:ENST00000567083
Ensembl:ENST00000569547 GeneID:60677 KEGG:hsa:60677 UCSC:uc002auh.2
UCSC:uc002auj.2 CTD:60677 GeneCards:GC15M072577 H-InvDB:HIX0012406
HGNC:HGNC:14059 MIM:612681 neXtProt:NX_Q96J87 PharmGKB:PA25430
InParanoid:Q96J87 OMA:MQHVAAF PhylomeDB:Q96J87
EvolutionaryTrace:Q96J87 GenomeRNAi:60677 NextBio:65492
ArrayExpress:Q96J87 Bgee:Q96J87 CleanEx:HS_BRUNOL6
Genevestigator:Q96J87 Uniprot:Q96J87
Length = 481
Score = 276 (102.2 bits), Expect = 1.3e-23, P = 1.3e-23
Identities = 59/80 (73%), Positives = 62/80 (77%)
Query: 2 FLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQ 61
FLPFG V+S+KVF+DRATNQSKCFG FVSFDNP SA TAIQAMNGFQ
Sbjct: 416 FLPFGAVVSAKVFVDRATNQSKCFG--------------FVSFDNPTSAQTAIQAMNGFQ 461
Query: 62 IGMKRLKVQLKRPKDAARPY 81
IGMKRLKVQLKRPKDA RPY
Sbjct: 462 IGMKRLKVQLKRPKDANRPY 481
>UNIPROTKB|E1B8K2 [details] [associations]
symbol:CELF6 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00560000076837 GO:GO:0000381 OMA:MQHVAAF
EMBL:DAAA02027998 IPI:IPI00694457 ProteinModelPortal:E1B8K2
Ensembl:ENSBTAT00000018735 Uniprot:E1B8K2
Length = 482
Score = 276 (102.2 bits), Expect = 1.3e-23, P = 1.3e-23
Identities = 59/80 (73%), Positives = 62/80 (77%)
Query: 2 FLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQ 61
FLPFG V+S+KVF+DRATNQSKCFG FVSFDNP SA TAIQAMNGFQ
Sbjct: 417 FLPFGAVVSAKVFVDRATNQSKCFG--------------FVSFDNPTSAQTAIQAMNGFQ 462
Query: 62 IGMKRLKVQLKRPKDAARPY 81
IGMKRLKVQLKRPKDA RPY
Sbjct: 463 IGMKRLKVQLKRPKDANRPY 482
>UNIPROTKB|F1SHM1 [details] [associations]
symbol:CELF6 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00560000076837 GO:GO:0000381 OMA:MQHVAAF
EMBL:CU012037 Ensembl:ENSSSCT00000002157 Uniprot:F1SHM1
Length = 482
Score = 276 (102.2 bits), Expect = 1.3e-23, P = 1.3e-23
Identities = 59/80 (73%), Positives = 62/80 (77%)
Query: 2 FLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQ 61
FLPFG V+S+KVF+DRATNQSKCFG FVSFDNP SA TAIQAMNGFQ
Sbjct: 417 FLPFGAVVSAKVFVDRATNQSKCFG--------------FVSFDNPTSAQTAIQAMNGFQ 462
Query: 62 IGMKRLKVQLKRPKDAARPY 81
IGMKRLKVQLKRPKDA RPY
Sbjct: 463 IGMKRLKVQLKRPKDANRPY 482
>UNIPROTKB|F1SAI1 [details] [associations]
symbol:CELF4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0090394 "negative regulation of excitatory postsynaptic
membrane potential" evidence=IEA] [GO:0048026 "positive regulation
of mRNA splicing, via spliceosome" evidence=IEA] [GO:0006376 "mRNA
splice site selection" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=IEA] [GO:0000381
"regulation of alternative mRNA splicing, via spliceosome"
evidence=IEA] [GO:0000380 "alternative mRNA splicing, via
spliceosome" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0000380 GO:GO:0048026
GO:GO:0006376 GeneTree:ENSGT00560000076837 GO:GO:0000381
OMA:SAMESIN EMBL:CU442705 EMBL:FP102263 Ensembl:ENSSSCT00000004150
Uniprot:F1SAI1
Length = 371
Score = 266 (98.7 bits), Expect = 4.8e-23, P = 4.8e-23
Identities = 60/80 (75%), Positives = 61/80 (76%)
Query: 1 MFLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGF 60
MFLPFGN ISSK F+DR TNQSKCFG FVSFDNPASA TAIQAMNGF
Sbjct: 306 MFLPFGNGISSKAFVDR-TNQSKCFG--------------FVSFDNPASAQTAIQAMNGF 350
Query: 61 QIGMKRLKVQLKRPKDAARP 80
QIGMKRLKVQLKRPKDA RP
Sbjct: 351 QIGMKRLKVQLKRPKDANRP 370
>UNIPROTKB|F1SID9 [details] [associations]
symbol:CELF1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0043484 "regulation of RNA splicing" evidence=IEA]
[GO:0042835 "BRE binding" evidence=IEA] [GO:0040018 "positive
regulation of multicellular organism growth" evidence=IEA]
[GO:0031369 "translation initiation factor binding" evidence=IEA]
[GO:0007286 "spermatid development" evidence=IEA] [GO:0006376 "mRNA
splice site selection" evidence=IEA] [GO:0003729 "mRNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330
GO:GO:0043484 GO:GO:0042835 GeneTree:ENSGT00560000076837
EMBL:CU856103 Ensembl:ENSSSCT00000014453 OMA:INQPITQ Uniprot:F1SID9
Length = 344
Score = 254 (94.5 bits), Expect = 9.0e-22, P = 9.0e-22
Identities = 52/81 (64%), Positives = 61/81 (75%)
Query: 1 MFLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGF 60
MF+PFGNV+S+KVFID+ TN SKCFG GFVS+DNP SA AIQ+MNGF
Sbjct: 275 MFMPFGNVVSAKVFIDKQTNLSKCFGHT-----------GFVSYDNPVSAQAAIQSMNGF 323
Query: 61 QIGMKRLKVQLKRPKDAARPY 81
QIGMKRLKVQLKR K+ ++PY
Sbjct: 324 QIGMKRLKVQLKRSKNDSKPY 344
>UNIPROTKB|F1RUN0 [details] [associations]
symbol:CELF2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0006376 "mRNA splice site selection" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0005737
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0006376
GeneTree:ENSGT00560000076837 EMBL:CU896684
Ensembl:ENSSSCT00000012171 OMA:PANNENR Uniprot:F1RUN0
Length = 236
Score = 247 (92.0 bits), Expect = 4.9e-21, P = 4.9e-21
Identities = 53/81 (65%), Positives = 60/81 (74%)
Query: 1 MFLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGF 60
MF+PFGNVIS+KVFID+ TN SKCFG FVS+DNP SA AIQAMNGF
Sbjct: 170 MFMPFGNVISAKVFIDKQTNLSKCFG--------------FVSYDNPVSAQAAIQAMNGF 215
Query: 61 QIGMKRLKVQLKRPKDAARPY 81
QIGMKRLKVQLKR K+ ++PY
Sbjct: 216 QIGMKRLKVQLKRSKNDSKPY 236
>UNIPROTKB|E1BIM7 [details] [associations]
symbol:LOC100851458 "Uncharacterized protein" species:9913
"Bos taurus" [GO:0006376 "mRNA splice site selection" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0005737
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0006376
GeneTree:ENSGT00560000076837 OMA:TMRNEEL EMBL:DAAA02035244
IPI:IPI00924044 ProteinModelPortal:E1BIM7
Ensembl:ENSBTAT00000011768 ArrayExpress:E1BIM7 Uniprot:E1BIM7
Length = 397
Score = 247 (92.0 bits), Expect = 9.2e-21, P = 9.2e-21
Identities = 53/81 (65%), Positives = 60/81 (74%)
Query: 1 MFLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGF 60
MF+PFGNVIS+KVFID+ TN SKCFG FVS+DNP SA AIQAMNGF
Sbjct: 331 MFMPFGNVISAKVFIDKQTNLSKCFG--------------FVSYDNPVSAQAAIQAMNGF 376
Query: 61 QIGMKRLKVQLKRPKDAARPY 81
QIGMKRLKVQLKR K+ ++PY
Sbjct: 377 QIGMKRLKVQLKRSKNDSKPY 397
>UNIPROTKB|B4DIB6 [details] [associations]
symbol:CELF2 "cDNA FLJ51739, highly similar to Homo sapiens
CUG triplet repeat, RNA binding protein 2 (CUGBP2), transcript
variant 2, mRNA" species:9606 "Homo sapiens" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006376
"mRNA splice site selection" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 EMBL:AC026887 HOVERGEN:HBG107646 HOGENOM:HOG000004754
OrthoDB:EOG4N8R4X GO:GO:0006376 EMBL:AL157704 EMBL:AL136320
UniGene:Hs.309288 HGNC:HGNC:2550 ChiTaRS:CELF2 EMBL:AL136369
EMBL:AL138769 EMBL:AL162408 EMBL:AK295511 IPI:IPI01011300
SMR:B4DIB6 STRING:B4DIB6 Ensembl:ENST00000537122 UCSC:uc010qbo.1
Uniprot:B4DIB6
Length = 403
Score = 247 (92.0 bits), Expect = 1.0e-20, P = 1.0e-20
Identities = 53/81 (65%), Positives = 60/81 (74%)
Query: 1 MFLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGF 60
MF+PFGNVIS+KVFID+ TN SKCFG FVS+DNP SA AIQAMNGF
Sbjct: 337 MFMPFGNVISAKVFIDKQTNLSKCFG--------------FVSYDNPVSAQAAIQAMNGF 382
Query: 61 QIGMKRLKVQLKRPKDAARPY 81
QIGMKRLKVQLKR K+ ++PY
Sbjct: 383 QIGMKRLKVQLKRSKNDSKPY 403
>UNIPROTKB|F1NZY6 [details] [associations]
symbol:CELF2 "CUGBP Elav-like family member 2" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GeneTree:ENSGT00560000076837 EMBL:AADN02039408
EMBL:AADN02039409 EMBL:AADN02039410 EMBL:AADN02039411
EMBL:AADN02039412 EMBL:AADN02039413 EMBL:AADN02039414
EMBL:AADN02039415 EMBL:AADN02039416 EMBL:AADN02039417
EMBL:AADN02039418 EMBL:AADN02039419 EMBL:AADN02039420
EMBL:AADN02039421 EMBL:AADN02039422 EMBL:AADN02039423
EMBL:AADN02039424 EMBL:AADN02039425 EMBL:AADN02039426
EMBL:AADN02039427 EMBL:AADN02039428 EMBL:AADN02039429
EMBL:AADN02039430 EMBL:AADN02039431 EMBL:AADN02039432
EMBL:AADN02039433 IPI:IPI00971429 Ensembl:ENSGALT00000010859
ArrayExpress:F1NZY6 Uniprot:F1NZY6
Length = 484
Score = 247 (92.0 bits), Expect = 2.2e-20, P = 2.2e-20
Identities = 53/81 (65%), Positives = 60/81 (74%)
Query: 1 MFLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGF 60
MF+PFGNVIS+KVFID+ TN SKCFG FVS+DNP SA AIQAMNGF
Sbjct: 418 MFMPFGNVISAKVFIDKQTNLSKCFG--------------FVSYDNPVSAQAAIQAMNGF 463
Query: 61 QIGMKRLKVQLKRPKDAARPY 81
QIGMKRLKVQLKR K+ ++PY
Sbjct: 464 QIGMKRLKVQLKRSKNDSKPY 484
>UNIPROTKB|Q7T2T1 [details] [associations]
symbol:CELF2 "CUGBP Elav-like family member 2" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 HSSP:Q92879 HOVERGEN:HBG107646
KO:K13207 eggNOG:NOG251494 HOGENOM:HOG000004754 EMBL:AY288985
EMBL:AY288986 IPI:IPI00574339 IPI:IPI00587312 RefSeq:NP_989591.1
UniGene:Gga.4919 ProteinModelPortal:Q7T2T1 SMR:Q7T2T1 STRING:Q7T2T1
PRIDE:Q7T2T1 GeneID:374111 KEGG:gga:374111 CTD:10659
InParanoid:Q7T2T1 NextBio:20813628 Uniprot:Q7T2T1
Length = 484
Score = 247 (92.0 bits), Expect = 2.2e-20, P = 2.2e-20
Identities = 53/81 (65%), Positives = 60/81 (74%)
Query: 1 MFLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGF 60
MF+PFGNVIS+KVFID+ TN SKCFG FVS+DNP SA AIQAMNGF
Sbjct: 418 MFMPFGNVISAKVFIDKQTNLSKCFG--------------FVSYDNPVSAQAAIQAMNGF 463
Query: 61 QIGMKRLKVQLKRPKDAARPY 81
QIGMKRLKVQLKR K+ ++PY
Sbjct: 464 QIGMKRLKVQLKRSKNDSKPY 484
>UNIPROTKB|E1C045 [details] [associations]
symbol:CELF2 "CUGBP Elav-like family member 2" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0006376 "mRNA splice site selection"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0006376
GeneTree:ENSGT00560000076837 IPI:IPI00587312 EMBL:AADN02039408
EMBL:AADN02039409 EMBL:AADN02039410 EMBL:AADN02039411
EMBL:AADN02039412 EMBL:AADN02039413 EMBL:AADN02039414
EMBL:AADN02039415 EMBL:AADN02039416 EMBL:AADN02039417
EMBL:AADN02039418 EMBL:AADN02039419 EMBL:AADN02039420
EMBL:AADN02039421 EMBL:AADN02039422 EMBL:AADN02039423
EMBL:AADN02039424 EMBL:AADN02039425 EMBL:AADN02039426
EMBL:AADN02039427 EMBL:AADN02039428 EMBL:AADN02039429
EMBL:AADN02039430 EMBL:AADN02039431 EMBL:AADN02039432
EMBL:AADN02039433 ProteinModelPortal:E1C045
Ensembl:ENSGALT00000010858 ArrayExpress:E1C045 Uniprot:E1C045
Length = 488
Score = 247 (92.0 bits), Expect = 2.3e-20, P = 2.3e-20
Identities = 53/81 (65%), Positives = 60/81 (74%)
Query: 1 MFLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGF 60
MF+PFGNVIS+KVFID+ TN SKCFG FVS+DNP SA AIQAMNGF
Sbjct: 422 MFMPFGNVISAKVFIDKQTNLSKCFG--------------FVSYDNPVSAQAAIQAMNGF 467
Query: 61 QIGMKRLKVQLKRPKDAARPY 81
QIGMKRLKVQLKR K+ ++PY
Sbjct: 468 QIGMKRLKVQLKRSKNDSKPY 488
>UNIPROTKB|F1P674 [details] [associations]
symbol:CELF2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 KO:K13207 GeneTree:ENSGT00560000076837 CTD:10659
OMA:TMRNEEL EMBL:AAEX03001288 EMBL:AAEX03001289 EMBL:AAEX03001290
RefSeq:XP_003433765.1 ProteinModelPortal:F1P674
Ensembl:ENSCAFT00000008021 GeneID:607310 KEGG:cfa:607310
Uniprot:F1P674
Length = 488
Score = 247 (92.0 bits), Expect = 2.3e-20, P = 2.3e-20
Identities = 53/81 (65%), Positives = 60/81 (74%)
Query: 1 MFLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGF 60
MF+PFGNVIS+KVFID+ TN SKCFG FVS+DNP SA AIQAMNGF
Sbjct: 422 MFMPFGNVISAKVFIDKQTNLSKCFG--------------FVSYDNPVSAQAAIQAMNGF 467
Query: 61 QIGMKRLKVQLKRPKDAARPY 81
QIGMKRLKVQLKR K+ ++PY
Sbjct: 468 QIGMKRLKVQLKRSKNDSKPY 488
>UNIPROTKB|F1P017 [details] [associations]
symbol:CELF2 "CUGBP Elav-like family member 2" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0006376 "mRNA splice site selection"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0006376
GeneTree:ENSGT00560000076837 OMA:TMRNEEL EMBL:AADN02039408
EMBL:AADN02039409 EMBL:AADN02039410 EMBL:AADN02039411
EMBL:AADN02039412 EMBL:AADN02039413 EMBL:AADN02039414
EMBL:AADN02039415 EMBL:AADN02039416 EMBL:AADN02039417
EMBL:AADN02039418 EMBL:AADN02039419 EMBL:AADN02039420
EMBL:AADN02039421 EMBL:AADN02039422 EMBL:AADN02039423
EMBL:AADN02039424 EMBL:AADN02039425 EMBL:AADN02039426
EMBL:AADN02039427 EMBL:AADN02039428 EMBL:AADN02039429
EMBL:AADN02039430 EMBL:AADN02039431 EMBL:AADN02039432
EMBL:AADN02039433 IPI:IPI00820413 Ensembl:ENSGALT00000040039
ArrayExpress:F1P017 Uniprot:F1P017
Length = 494
Score = 247 (92.0 bits), Expect = 2.4e-20, P = 2.4e-20
Identities = 53/81 (65%), Positives = 60/81 (74%)
Query: 1 MFLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGF 60
MF+PFGNVIS+KVFID+ TN SKCFG FVS+DNP SA AIQAMNGF
Sbjct: 428 MFMPFGNVISAKVFIDKQTNLSKCFG--------------FVSYDNPVSAQAAIQAMNGF 473
Query: 61 QIGMKRLKVQLKRPKDAARPY 81
QIGMKRLKVQLKR K+ ++PY
Sbjct: 474 QIGMKRLKVQLKRSKNDSKPY 494
>UNIPROTKB|Q5VZZ6 [details] [associations]
symbol:CELF2 "CUGBP Elav-like family member 2" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 EMBL:AC026887 HOVERGEN:HBG107646 HOGENOM:HOG000004754
EMBL:AL157704 EMBL:AL136320 IPI:IPI00845480 UniGene:Hs.309288
HGNC:HGNC:2550 EMBL:AL136369 EMBL:AL138769 EMBL:AL162408 SMR:Q5VZZ6
Ensembl:ENST00000354897 Uniprot:Q5VZZ6
Length = 498
Score = 247 (92.0 bits), Expect = 2.4e-20, P = 2.4e-20
Identities = 53/81 (65%), Positives = 60/81 (74%)
Query: 1 MFLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGF 60
MF+PFGNVIS+KVFID+ TN SKCFG FVS+DNP SA AIQAMNGF
Sbjct: 432 MFMPFGNVISAKVFIDKQTNLSKCFG--------------FVSYDNPVSAQAAIQAMNGF 477
Query: 61 QIGMKRLKVQLKRPKDAARPY 81
QIGMKRLKVQLKR K+ ++PY
Sbjct: 478 QIGMKRLKVQLKRSKNDSKPY 498
>UNIPROTKB|O95319 [details] [associations]
symbol:CELF2 "CUGBP Elav-like family member 2" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0006396 "RNA processing"
evidence=TAS] [GO:0008016 "regulation of heart contraction"
evidence=TAS] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0008016 GO:GO:0003723
GO:GO:0006396 EMBL:CH471072 EMBL:AC026887 HSSP:Q92879
HOVERGEN:HBG107646 KO:K13207 eggNOG:NOG251494 CTD:10659
EMBL:AF090694 EMBL:AF090693 EMBL:AF036956 EMBL:U69546 EMBL:AF295068
EMBL:AF295063 EMBL:AF295064 EMBL:AF295065 EMBL:AF295066
EMBL:AF295067 EMBL:AF314199 EMBL:AF432906 EMBL:AK316354
EMBL:AL157704 EMBL:AL136320 EMBL:BC036391 IPI:IPI00410277
IPI:IPI00607544 IPI:IPI00845479 IPI:IPI00845480 IPI:IPI00853320
RefSeq:NP_001020247.1 RefSeq:NP_001020248.1 RefSeq:NP_001077060.1
RefSeq:NP_006552.3 UniGene:Hs.309288 ProteinModelPortal:O95319
SMR:O95319 IntAct:O95319 MINT:MINT-2868664 STRING:O95319
PhosphoSite:O95319 UCD-2DPAGE:O95319 PaxDb:O95319 PRIDE:O95319
Ensembl:ENST00000315874 Ensembl:ENST00000354440
Ensembl:ENST00000379261 Ensembl:ENST00000399850
Ensembl:ENST00000416382 Ensembl:ENST00000417956
Ensembl:ENST00000427450 GeneID:10659 KEGG:hsa:10659 UCSC:uc001iki.4
UCSC:uc001ikk.2 UCSC:uc001iko.4 UCSC:uc001ikp.4 UCSC:uc010qbj.1
GeneCards:GC10P011049 HGNC:HGNC:2550 MIM:602538 neXtProt:NX_O95319
PharmGKB:PA27046 ChiTaRS:CELF2 GenomeRNAi:10659 NextBio:40529
ArrayExpress:O95319 Bgee:O95319 CleanEx:HS_CUGBP2
Genevestigator:O95319 Uniprot:O95319
Length = 508
Score = 247 (92.0 bits), Expect = 2.6e-20, P = 2.6e-20
Identities = 53/81 (65%), Positives = 60/81 (74%)
Query: 1 MFLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGF 60
MF+PFGNVIS+KVFID+ TN SKCFG FVS+DNP SA AIQAMNGF
Sbjct: 442 MFMPFGNVISAKVFIDKQTNLSKCFG--------------FVSYDNPVSAQAAIQAMNGF 487
Query: 61 QIGMKRLKVQLKRPKDAARPY 81
QIGMKRLKVQLKR K+ ++PY
Sbjct: 488 QIGMKRLKVQLKRSKNDSKPY 508
>MGI|MGI:1338822 [details] [associations]
symbol:Celf2 "CUGBP, Elav-like family member 2"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISO] [GO:0005634 "nucleus"
evidence=ISS;IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0006376
"mRNA splice site selection" evidence=IDA] [GO:0006397 "mRNA
processing" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1338822 GO:GO:0005634 GO:GO:0005737
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 HSSP:Q92879
HOVERGEN:HBG107646 KO:K13207 eggNOG:NOG251494 GO:GO:0006376
GeneTree:ENSGT00560000076837 CTD:10659 ChiTaRS:CELF2 EMBL:AF090696
EMBL:AF090697 EMBL:Y18298 EMBL:AK137292 EMBL:AK151818 EMBL:AK152628
EMBL:AK153267 EMBL:AK160861 EMBL:AK161349 EMBL:AK164914
EMBL:AL929240 EMBL:AL845492 EMBL:AL845515 EMBL:BC026856
IPI:IPI00129146 IPI:IPI00651950 IPI:IPI00750780 IPI:IPI00751703
IPI:IPI00756899 IPI:IPI00853748 IPI:IPI00853844 IPI:IPI00853921
IPI:IPI00854018 IPI:IPI00854021 RefSeq:NP_001103698.1
RefSeq:NP_001103699.1 RefSeq:NP_001103700.1 RefSeq:NP_001103701.1
RefSeq:NP_001103702.1 RefSeq:NP_001153764.1 RefSeq:NP_001153765.1
RefSeq:NP_034290.2 UniGene:Mm.398543 ProteinModelPortal:Q9Z0H4
SMR:Q9Z0H4 STRING:Q9Z0H4 PhosphoSite:Q9Z0H4 PaxDb:Q9Z0H4
PRIDE:Q9Z0H4 Ensembl:ENSMUST00000002176 Ensembl:ENSMUST00000100429
Ensembl:ENSMUST00000114924 Ensembl:ENSMUST00000114927
Ensembl:ENSMUST00000114934 GeneID:14007 KEGG:mmu:14007
UCSC:uc008ign.1 UCSC:uc008igo.1 UCSC:uc008igp.1 UCSC:uc008igq.2
UCSC:uc008igs.2 UCSC:uc008igt.2 UCSC:uc008igv.2 InParanoid:Q9Z0H4
OMA:TMRNEEL NextBio:284908 Bgee:Q9Z0H4 CleanEx:MM_CUGBP2
Genevestigator:Q9Z0H4 Uniprot:Q9Z0H4
Length = 508
Score = 247 (92.0 bits), Expect = 2.6e-20, P = 2.6e-20
Identities = 53/81 (65%), Positives = 60/81 (74%)
Query: 1 MFLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGF 60
MF+PFGNVIS+KVFID+ TN SKCFG FVS+DNP SA AIQAMNGF
Sbjct: 442 MFMPFGNVISAKVFIDKQTNLSKCFG--------------FVSYDNPVSAQAAIQAMNGF 487
Query: 61 QIGMKRLKVQLKRPKDAARPY 81
QIGMKRLKVQLKR K+ ++PY
Sbjct: 488 QIGMKRLKVQLKRSKNDSKPY 508
>RGD|68347 [details] [associations]
symbol:Celf2 "CUGBP, Elav-like family member 2" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IDA] [GO:0005634 "nucleus"
evidence=IEA;ISO] [GO:0005737 "cytoplasm" evidence=IEA;ISO]
[GO:0006376 "mRNA splice site selection" evidence=IEA;ISO]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360 RGD:68347
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 HSSP:Q92879 HOVERGEN:HBG107646 KO:K13207
eggNOG:NOG251494 HOGENOM:HOG000004754 OrthoDB:EOG4N8R4X
GO:GO:0006376 GeneTree:ENSGT00560000076837 CTD:10659 OMA:TMRNEEL
EMBL:AF090695 EMBL:AJ010351 EMBL:AJ010386 EMBL:BC129096
IPI:IPI00212483 IPI:IPI00781372 IPI:IPI00854036 IPI:IPI00854042
RefSeq:NP_058893.2 UniGene:Rn.162247 ProteinModelPortal:Q792H5
SMR:Q792H5 STRING:Q792H5 PhosphoSite:Q792H5 PRIDE:Q792H5
Ensembl:ENSRNOT00000023436 GeneID:29428 KEGG:rno:29428
InParanoid:Q792H5 NextBio:609142 ArrayExpress:Q792H5
Genevestigator:Q792H5 Uniprot:Q792H5
Length = 508
Score = 247 (92.0 bits), Expect = 2.6e-20, P = 2.6e-20
Identities = 53/81 (65%), Positives = 60/81 (74%)
Query: 1 MFLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGF 60
MF+PFGNVIS+KVFID+ TN SKCFG FVS+DNP SA AIQAMNGF
Sbjct: 442 MFMPFGNVISAKVFIDKQTNLSKCFG--------------FVSYDNPVSAQAAIQAMNGF 487
Query: 61 QIGMKRLKVQLKRPKDAARPY 81
QIGMKRLKVQLKR K+ ++PY
Sbjct: 488 QIGMKRLKVQLKRSKNDSKPY 508
>UNIPROTKB|E9PC62 [details] [associations]
symbol:CELF2 "CUGBP Elav-like family member 2" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0006376 "mRNA splice site selection"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AC026887 KO:K13207
GO:GO:0006376 CTD:10659 EMBL:AL157704 EMBL:AL136320 IPI:IPI00845479
RefSeq:NP_006552.3 UniGene:Hs.309288 GeneID:10659 KEGG:hsa:10659
HGNC:HGNC:2550 ChiTaRS:CELF2 GenomeRNAi:10659 NextBio:40529
OMA:TMRNEEL EMBL:AL136369 EMBL:AL138769 EMBL:AL162408 SMR:E9PC62
Ensembl:ENST00000450189 Ensembl:ENST00000542579 UCSC:uc001ikl.4
Uniprot:E9PC62
Length = 521
Score = 247 (92.0 bits), Expect = 2.8e-20, P = 2.8e-20
Identities = 53/81 (65%), Positives = 60/81 (74%)
Query: 1 MFLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGF 60
MF+PFGNVIS+KVFID+ TN SKCFG FVS+DNP SA AIQAMNGF
Sbjct: 455 MFMPFGNVISAKVFIDKQTNLSKCFG--------------FVSYDNPVSAQAAIQAMNGF 500
Query: 61 QIGMKRLKVQLKRPKDAARPY 81
QIGMKRLKVQLKR K+ ++PY
Sbjct: 501 QIGMKRLKVQLKRSKNDSKPY 521
>ZFIN|ZDB-GENE-030826-35 [details] [associations]
symbol:celf2 "cugbp, Elav-like family member 2"
species:7955 "Danio rerio" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-030826-35 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00560000076837
EMBL:AL935165 EMBL:BX511190 EMBL:CABZ01029785 EMBL:CABZ01029786
EMBL:CABZ01029787 IPI:IPI00994559 Ensembl:ENSDART00000129320
ArrayExpress:E7F7K3 Bgee:E7F7K3 Uniprot:E7F7K3
Length = 585
Score = 246 (91.7 bits), Expect = 4.7e-20, P = 4.7e-20
Identities = 52/81 (64%), Positives = 60/81 (74%)
Query: 1 MFLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGF 60
MF+PFGNV+S+KVFID+ TN SKCFG FVS+DNP SA AIQAMNGF
Sbjct: 519 MFMPFGNVVSAKVFIDKQTNLSKCFG--------------FVSYDNPVSAQAAIQAMNGF 564
Query: 61 QIGMKRLKVQLKRPKDAARPY 81
QIGMKRLKVQLKR K+ ++PY
Sbjct: 565 QIGMKRLKVQLKRSKNDSKPY 585
>UNIPROTKB|F1ND14 [details] [associations]
symbol:CELF1 "CUGBP Elav-like family member 1" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0040018 "positive regulation of multicellular organism growth"
evidence=IEA] [GO:0042835 "BRE binding" evidence=IEA] [GO:0043484
"regulation of RNA splicing" evidence=IEA] [GO:0003729 "mRNA
binding" evidence=IEA] [GO:0006376 "mRNA splice site selection"
evidence=IEA] [GO:0007286 "spermatid development" evidence=IEA]
[GO:0031369 "translation initiation factor binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330
GO:GO:0040018 GO:GO:0043484 IPI:IPI00854332 GO:GO:0042835
GO:GO:0006376 GeneTree:ENSGT00560000076837 OMA:PTLYNQS
EMBL:AADN02033464 Ensembl:ENSGALT00000013143
Ensembl:ENSGALT00000038511 Uniprot:F1ND14
Length = 485
Score = 243 (90.6 bits), Expect = 6.1e-20, P = 6.1e-20
Identities = 51/81 (62%), Positives = 60/81 (74%)
Query: 1 MFLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGF 60
MF+PFGNV+S+KVFID+ TN SKCFG FVS+DNP SA AIQ+MNGF
Sbjct: 419 MFMPFGNVVSAKVFIDKQTNLSKCFG--------------FVSYDNPVSAQAAIQSMNGF 464
Query: 61 QIGMKRLKVQLKRPKDAARPY 81
QIGMKRLKVQLKR K+ ++PY
Sbjct: 465 QIGMKRLKVQLKRSKNDSKPY 485
>UNIPROTKB|A7MB95 [details] [associations]
symbol:CUGBP1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0043484 "regulation of RNA splicing" evidence=IEA]
[GO:0042835 "BRE binding" evidence=IEA] [GO:0040018 "positive
regulation of multicellular organism growth" evidence=IEA]
[GO:0031369 "translation initiation factor binding" evidence=IEA]
[GO:0007286 "spermatid development" evidence=IEA] [GO:0006376 "mRNA
splice site selection" evidence=IEA] [GO:0003729 "mRNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0007286 GO:GO:0000166 GO:GO:0003729
Gene3D:3.30.70.330 GO:GO:0040018 GO:GO:0043484 HOVERGEN:HBG107646
KO:K13207 CTD:10658 eggNOG:NOG251494 HOGENOM:HOG000004754
OrthoDB:EOG4N8R4X GO:GO:0042835 GO:GO:0006376
GeneTree:ENSGT00560000076837 OMA:PTLYNQS EMBL:DAAA02041602
EMBL:DAAA02041603 EMBL:DAAA02041604 EMBL:BC151433 IPI:IPI00824850
RefSeq:NP_001094682.1 UniGene:Bt.16531 SMR:A7MB95 STRING:A7MB95
Ensembl:ENSBTAT00000003274 GeneID:540475 KEGG:bta:540475
InParanoid:A7MB95 NextBio:20878658 Uniprot:A7MB95
Length = 486
Score = 243 (90.6 bits), Expect = 6.1e-20, P = 6.1e-20
Identities = 51/81 (62%), Positives = 60/81 (74%)
Query: 1 MFLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGF 60
MF+PFGNV+S+KVFID+ TN SKCFG FVS+DNP SA AIQ+MNGF
Sbjct: 420 MFMPFGNVVSAKVFIDKQTNLSKCFG--------------FVSYDNPVSAQAAIQSMNGF 465
Query: 61 QIGMKRLKVQLKRPKDAARPY 81
QIGMKRLKVQLKR K+ ++PY
Sbjct: 466 QIGMKRLKVQLKRSKNDSKPY 486
>UNIPROTKB|Q92879 [details] [associations]
symbol:CELF1 "CUGBP Elav-like family member 1" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0007286 "spermatid development" evidence=IEA] [GO:0031369
"translation initiation factor binding" evidence=IEA] [GO:0040018
"positive regulation of multicellular organism growth"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006376
"mRNA splice site selection" evidence=ISS] [GO:0005634 "nucleus"
evidence=NAS] [GO:0042835 "BRE binding" evidence=IDA] [GO:0016246
"RNA interference" evidence=NAS] [GO:0007281 "germ cell
development" evidence=NAS] [GO:0009790 "embryo development"
evidence=NAS] [GO:0030529 "ribonucleoprotein complex" evidence=NAS]
[GO:0000900 "translation repressor activity, nucleic acid binding"
evidence=NAS] [GO:0003723 "RNA binding" evidence=IDA] [GO:0005515
"protein binding" evidence=IPI] [GO:0043484 "regulation of RNA
splicing" evidence=IDA] [GO:0006397 "mRNA processing" evidence=TAS]
[GO:0003729 "mRNA binding" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 EMBL:CH471064 GO:GO:0016246
GO:GO:0007286 GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330
GO:GO:0040018 GO:GO:0003676 GO:GO:0009790 GO:GO:0030529
GO:GO:0007281 GO:GO:0043484 GO:GO:0000900 HOVERGEN:HBG107646
KO:K13207 CTD:10658 eggNOG:NOG251494 HOGENOM:HOG000004754
OrthoDB:EOG4N8R4X EMBL:U63289 EMBL:AF248648 EMBL:AF267533
EMBL:AF267534 EMBL:AJ007988 EMBL:AK304430 EMBL:AB210019
EMBL:AC090559 EMBL:BC031079 IPI:IPI00034015 IPI:IPI00218388
IPI:IPI00218389 IPI:IPI00853009 IPI:IPI00956101
RefSeq:NP_001020767.1 RefSeq:NP_001166110.1 RefSeq:NP_001166111.1
RefSeq:NP_006551.1 RefSeq:NP_941989.1 UniGene:Hs.595333 PDB:2CPZ
PDB:2DHS PDB:2RQ4 PDB:2RQC PDB:3NMR PDB:3NNA PDB:3NNC PDB:3NNH
PDBsum:2CPZ PDBsum:2DHS PDBsum:2RQ4 PDBsum:2RQC PDBsum:3NMR
PDBsum:3NNA PDBsum:3NNC PDBsum:3NNH ProteinModelPortal:Q92879
SMR:Q92879 IntAct:Q92879 MINT:MINT-1382906 STRING:Q92879
PhosphoSite:Q92879 DMDM:17374605 PaxDb:Q92879 PRIDE:Q92879
DNASU:10658 Ensembl:ENST00000310513 Ensembl:ENST00000358597
Ensembl:ENST00000361904 Ensembl:ENST00000395290
Ensembl:ENST00000395292 Ensembl:ENST00000532048 GeneID:10658
KEGG:hsa:10658 UCSC:uc001nfk.2 UCSC:uc001nfl.3 UCSC:uc001nfm.3
UCSC:uc001nfn.3 GeneCards:GC11M047602 HGNC:HGNC:2549 HPA:CAB016114
MIM:601074 neXtProt:NX_Q92879 PharmGKB:PA27045 InParanoid:Q92879
PhylomeDB:Q92879 ChiTaRS:CELF1 EvolutionaryTrace:Q92879
GenomeRNAi:10658 NextBio:40521 ArrayExpress:Q92879 Bgee:Q92879
CleanEx:HS_CUGBP1 Genevestigator:Q92879 GermOnline:ENSG00000149187
GO:GO:0042835 GO:GO:0006376 Uniprot:Q92879
Length = 486
Score = 243 (90.6 bits), Expect = 6.1e-20, P = 6.1e-20
Identities = 51/81 (62%), Positives = 60/81 (74%)
Query: 1 MFLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGF 60
MF+PFGNV+S+KVFID+ TN SKCFG FVS+DNP SA AIQ+MNGF
Sbjct: 420 MFMPFGNVVSAKVFIDKQTNLSKCFG--------------FVSYDNPVSAQAAIQSMNGF 465
Query: 61 QIGMKRLKVQLKRPKDAARPY 81
QIGMKRLKVQLKR K+ ++PY
Sbjct: 466 QIGMKRLKVQLKRSKNDSKPY 486
>MGI|MGI:1342295 [details] [associations]
symbol:Celf1 "CUGBP, Elav-like family member 1"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISO] [GO:0003729 "mRNA binding"
evidence=ISO] [GO:0005634 "nucleus" evidence=IDA;TAS] [GO:0005737
"cytoplasm" evidence=IDA;TAS] [GO:0006376 "mRNA splice site
selection" evidence=IDA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0007286 "spermatid development" evidence=IMP]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0031369 "translation
initiation factor binding" evidence=IDA] [GO:0040018 "positive
regulation of multicellular organism growth" evidence=IMP]
[GO:0042835 "BRE binding" evidence=ISO] [GO:0043484 "regulation of
RNA splicing" evidence=ISO] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 MGI:MGI:1342295
GO:GO:0005634 GO:GO:0005737 GO:GO:0007286 GO:GO:0000166
GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0040018 GO:GO:0043484
EMBL:AL672241 HOVERGEN:HBG107646 KO:K13207 CTD:10658
eggNOG:NOG251494 ChiTaRS:CELF1 GO:GO:0042835 GO:GO:0006376
EMBL:AJ007987 EMBL:AF267535 EMBL:AK135030 EMBL:AK143698
EMBL:AK014492 EMBL:AK156725 EMBL:BC021393 EMBL:AF314172
EMBL:AB050499 EMBL:X61451 IPI:IPI00123205 IPI:IPI00229237
IPI:IPI00229238 IPI:IPI00395213 PIR:S16865 RefSeq:NP_001231820.1
RefSeq:NP_001231832.1 RefSeq:NP_059064.2 RefSeq:NP_941955.1
UniGene:Mm.29495 UniGene:Mm.490161 ProteinModelPortal:P28659
SMR:P28659 STRING:P28659 PhosphoSite:P28659 PaxDb:P28659
PRIDE:P28659 Ensembl:ENSMUST00000005643 Ensembl:ENSMUST00000068726
Ensembl:ENSMUST00000068747 Ensembl:ENSMUST00000111448
Ensembl:ENSMUST00000111449 Ensembl:ENSMUST00000111451
Ensembl:ENSMUST00000111452 Ensembl:ENSMUST00000111455
Ensembl:ENSMUST00000177642 GeneID:13046 KEGG:mmu:13046
UCSC:uc008ktx.1 GeneTree:ENSGT00560000076837 InParanoid:P28659
OMA:PTLYNQS NextBio:282946 Bgee:P28659 CleanEx:MM_CUGBP1
Genevestigator:P28659 GermOnline:ENSMUSG00000005506 GO:GO:0031369
Uniprot:P28659
Length = 486
Score = 243 (90.6 bits), Expect = 6.1e-20, P = 6.1e-20
Identities = 51/81 (62%), Positives = 60/81 (74%)
Query: 1 MFLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGF 60
MF+PFGNV+S+KVFID+ TN SKCFG FVS+DNP SA AIQ+MNGF
Sbjct: 420 MFMPFGNVVSAKVFIDKQTNLSKCFG--------------FVSYDNPVSAQAAIQSMNGF 465
Query: 61 QIGMKRLKVQLKRPKDAARPY 81
QIGMKRLKVQLKR K+ ++PY
Sbjct: 466 QIGMKRLKVQLKRSKNDSKPY 486
>RGD|1307721 [details] [associations]
symbol:Celf1 "CUGBP, Elav-like family member 1" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=ISO;ISS] [GO:0003729 "mRNA binding"
evidence=IEA;ISO] [GO:0005634 "nucleus" evidence=IEA;ISO]
[GO:0005737 "cytoplasm" evidence=IEA;ISO] [GO:0006376 "mRNA splice
site selection" evidence=IEA;ISO] [GO:0007286 "spermatid
development" evidence=IEA;ISO] [GO:0031369 "translation initiation
factor binding" evidence=IEA;ISO] [GO:0040018 "positive regulation
of multicellular organism growth" evidence=IEA;ISO] [GO:0042835
"BRE binding" evidence=IEA;ISO] [GO:0043484 "regulation of RNA
splicing" evidence=ISO;ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:1307721
GO:GO:0005634 GO:GO:0005737 GO:GO:0007286 GO:GO:0000166
GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0040018 GO:GO:0003723
GO:GO:0043484 HSSP:Q92879 HOVERGEN:HBG107646 KO:K13207 CTD:10658
eggNOG:NOG251494 HOGENOM:HOG000004754 OrthoDB:EOG4N8R4X
GO:GO:0042835 GO:GO:0006376 EMBL:BC098012 IPI:IPI00373642
RefSeq:NP_001020592.1 UniGene:Rn.22432 ProteinModelPortal:Q4QQT3
SMR:Q4QQT3 STRING:Q4QQT3 PhosphoSite:Q4QQT3 PRIDE:Q4QQT3
GeneID:362160 KEGG:rno:362160 UCSC:RGD:1307721 InParanoid:Q4QQT3
NextBio:678844 Genevestigator:Q4QQT3 Uniprot:Q4QQT3
Length = 487
Score = 243 (90.6 bits), Expect = 6.2e-20, P = 6.2e-20
Identities = 51/81 (62%), Positives = 60/81 (74%)
Query: 1 MFLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGF 60
MF+PFGNV+S+KVFID+ TN SKCFG FVS+DNP SA AIQ+MNGF
Sbjct: 421 MFMPFGNVVSAKVFIDKQTNLSKCFG--------------FVSYDNPVSAQAAIQSMNGF 466
Query: 61 QIGMKRLKVQLKRPKDAARPY 81
QIGMKRLKVQLKR K+ ++PY
Sbjct: 467 QIGMKRLKVQLKRSKNDSKPY 487
>UNIPROTKB|Q4QQT3 [details] [associations]
symbol:Celf1 "CUGBP Elav-like family member 1"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:1307721 GO:GO:0005634
GO:GO:0005737 GO:GO:0007286 GO:GO:0000166 GO:GO:0003729
Gene3D:3.30.70.330 GO:GO:0040018 GO:GO:0003723 GO:GO:0043484
HSSP:Q92879 HOVERGEN:HBG107646 KO:K13207 CTD:10658 eggNOG:NOG251494
HOGENOM:HOG000004754 OrthoDB:EOG4N8R4X GO:GO:0042835 GO:GO:0006376
EMBL:BC098012 IPI:IPI00373642 RefSeq:NP_001020592.1
UniGene:Rn.22432 ProteinModelPortal:Q4QQT3 SMR:Q4QQT3 STRING:Q4QQT3
PhosphoSite:Q4QQT3 PRIDE:Q4QQT3 GeneID:362160 KEGG:rno:362160
UCSC:RGD:1307721 InParanoid:Q4QQT3 NextBio:678844
Genevestigator:Q4QQT3 Uniprot:Q4QQT3
Length = 487
Score = 243 (90.6 bits), Expect = 6.2e-20, P = 6.2e-20
Identities = 51/81 (62%), Positives = 60/81 (74%)
Query: 1 MFLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGF 60
MF+PFGNV+S+KVFID+ TN SKCFG FVS+DNP SA AIQ+MNGF
Sbjct: 421 MFMPFGNVVSAKVFIDKQTNLSKCFG--------------FVSYDNPVSAQAAIQSMNGF 466
Query: 61 QIGMKRLKVQLKRPKDAARPY 81
QIGMKRLKVQLKR K+ ++PY
Sbjct: 467 QIGMKRLKVQLKRSKNDSKPY 487
>UNIPROTKB|Q5F3T7 [details] [associations]
symbol:CELF1 "CUGBP Elav-like family member 1" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0005737
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 HSSP:Q92879 HOVERGEN:HBG107646 KO:K13207
EMBL:AJ851563 EMBL:AB050497 IPI:IPI00581213 IPI:IPI00854332
RefSeq:NP_001012539.1 UniGene:Gga.14943 UniGene:Gga.56092
ProteinModelPortal:Q5F3T7 SMR:Q5F3T7 STRING:Q5F3T7 PRIDE:Q5F3T7
GeneID:373923 KEGG:gga:373923 CTD:10658 eggNOG:NOG251494
HOGENOM:HOG000004754 InParanoid:Q5F3T7 OrthoDB:EOG4N8R4X
NextBio:20813455 Uniprot:Q5F3T7
Length = 489
Score = 243 (90.6 bits), Expect = 6.3e-20, P = 6.3e-20
Identities = 51/81 (62%), Positives = 60/81 (74%)
Query: 1 MFLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGF 60
MF+PFGNV+S+KVFID+ TN SKCFG FVS+DNP SA AIQ+MNGF
Sbjct: 423 MFMPFGNVVSAKVFIDKQTNLSKCFG--------------FVSYDNPVSAQAAIQSMNGF 468
Query: 61 QIGMKRLKVQLKRPKDAARPY 81
QIGMKRLKVQLKR K+ ++PY
Sbjct: 469 QIGMKRLKVQLKRSKNDSKPY 489
>UNIPROTKB|E2R8F6 [details] [associations]
symbol:CELF1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0043484 "regulation of RNA splicing"
evidence=IEA] [GO:0042835 "BRE binding" evidence=IEA] [GO:0040018
"positive regulation of multicellular organism growth"
evidence=IEA] [GO:0031369 "translation initiation factor binding"
evidence=IEA] [GO:0007286 "spermatid development" evidence=IEA]
[GO:0006376 "mRNA splice site selection" evidence=IEA] [GO:0003729
"mRNA binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0007286 GO:GO:0000166
GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0040018 GO:GO:0043484
GO:GO:0042835 GO:GO:0006376 GeneTree:ENSGT00560000076837
OMA:PTLYNQS EMBL:AAEX03011483 ProteinModelPortal:E2R8F6
Ensembl:ENSCAFT00000013438 Uniprot:E2R8F6
Length = 513
Score = 243 (90.6 bits), Expect = 7.2e-20, P = 7.2e-20
Identities = 51/81 (62%), Positives = 60/81 (74%)
Query: 1 MFLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGF 60
MF+PFGNV+S+KVFID+ TN SKCFG FVS+DNP SA AIQ+MNGF
Sbjct: 447 MFMPFGNVVSAKVFIDKQTNLSKCFG--------------FVSYDNPVSAQAAIQSMNGF 492
Query: 61 QIGMKRLKVQLKRPKDAARPY 81
QIGMKRLKVQLKR K+ ++PY
Sbjct: 493 QIGMKRLKVQLKRSKNDSKPY 513
>UNIPROTKB|Q5R995 [details] [associations]
symbol:CELF1 "CUGBP Elav-like family member 1" species:9601
"Pongo abelii" [GO:0003723 "RNA binding" evidence=ISS] [GO:0043484
"regulation of RNA splicing" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0008380 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0043484
HSSP:Q92879 HOVERGEN:HBG107646 KO:K13207 CTD:10658 EMBL:CR859496
RefSeq:NP_001125976.1 UniGene:Pab.4290 ProteinModelPortal:Q5R995
SMR:Q5R995 PRIDE:Q5R995 GeneID:100172914 KEGG:pon:100172914
InParanoid:Q5R995 Uniprot:Q5R995
Length = 513
Score = 243 (90.6 bits), Expect = 7.2e-20, P = 7.2e-20
Identities = 51/81 (62%), Positives = 60/81 (74%)
Query: 1 MFLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGF 60
MF+PFGNV+S+KVFID+ TN SKCFG FVS+DNP SA AIQ+MNGF
Sbjct: 447 MFMPFGNVVSAKVFIDKQTNLSKCFG--------------FVSYDNPVSAQAAIQSMNGF 492
Query: 61 QIGMKRLKVQLKRPKDAARPY 81
QIGMKRLKVQLKR K+ ++PY
Sbjct: 493 QIGMKRLKVQLKRSKNDSKPY 513
>UNIPROTKB|G5EA30 [details] [associations]
symbol:CELF1 "CUG triplet repeat, RNA binding protein 1,
isoform CRA_c" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CH471064 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC090559 UniGene:Hs.595333
HGNC:HGNC:2549 ChiTaRS:CELF1 OMA:PTLYNQS ProteinModelPortal:G5EA30
SMR:G5EA30 PRIDE:G5EA30 Ensembl:ENST00000531165 ArrayExpress:G5EA30
Bgee:G5EA30 Uniprot:G5EA30
Length = 514
Score = 243 (90.6 bits), Expect = 7.2e-20, P = 7.2e-20
Identities = 51/81 (62%), Positives = 60/81 (74%)
Query: 1 MFLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGF 60
MF+PFGNV+S+KVFID+ TN SKCFG FVS+DNP SA AIQ+MNGF
Sbjct: 448 MFMPFGNVVSAKVFIDKQTNLSKCFG--------------FVSYDNPVSAQAAIQSMNGF 493
Query: 61 QIGMKRLKVQLKRPKDAARPY 81
QIGMKRLKVQLKR K+ ++PY
Sbjct: 494 QIGMKRLKVQLKRSKNDSKPY 514
>ZFIN|ZDB-GENE-000501-1 [details] [associations]
symbol:celf1 "cugbp, Elav-like family member 1"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0045495 "pole plasm"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IEA;IDA] [GO:0005634
"nucleus" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-000501-1 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0045495
GeneTree:ENSGT00560000076837 EMBL:CR318601 EMBL:BX571680
IPI:IPI00492280 Ensembl:ENSDART00000123170 Uniprot:E7F304
Length = 535
Score = 241 (89.9 bits), Expect = 1.3e-19, P = 1.3e-19
Identities = 51/81 (62%), Positives = 60/81 (74%)
Query: 1 MFLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGF 60
MF+PFGNVIS+KVFID+ TN SKCFG FVS+DNP S+ AIQ+MNGF
Sbjct: 469 MFMPFGNVISAKVFIDKQTNLSKCFG--------------FVSYDNPVSSQAAIQSMNGF 514
Query: 61 QIGMKRLKVQLKRPKDAARPY 81
QIGMKRLKVQLKR K+ ++PY
Sbjct: 515 QIGMKRLKVQLKRSKNDSKPY 535
>FB|FBgn0262475 [details] [associations]
symbol:bru-2 "bruno-2" species:7227 "Drosophila melanogaster"
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0005575
"cellular_component" evidence=ND] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0017148 "negative regulation of translation"
evidence=ISA] [GO:0003723 "RNA binding" evidence=ISA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:AE014134 GO:GO:0017148 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GeneTree:ENSGT00560000076837
RefSeq:NP_001036356.1 UniGene:Dm.412 ProteinModelPortal:Q0E8R3
SMR:Q0E8R3 PRIDE:Q0E8R3 EnsemblMetazoa:FBtr0304856
EnsemblMetazoa:FBtr0332233 GeneID:250811 KEGG:dme:Dmel_CG43065
UCSC:CG31761-RE CTD:250811 FlyBase:FBgn0262475 OMA:AHVANGN
PhylomeDB:Q0E8R3 GenomeRNAi:250811 NextBio:843510 Bgee:Q0E8R3
Uniprot:Q0E8R3
Length = 893
Score = 244 (91.0 bits), Expect = 1.7e-19, P = 1.7e-19
Identities = 53/80 (66%), Positives = 60/80 (75%)
Query: 2 FLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQ 61
FLPFGNV+S+KVFID+ TN SKCFG FVS+DNP SA+ AIQAM+GFQ
Sbjct: 828 FLPFGNVLSAKVFIDKQTNLSKCFG--------------FVSYDNPHSANAAIQAMHGFQ 873
Query: 62 IGMKRLKVQLKRPKDAARPY 81
IG KRLKVQLKR KDAA+PY
Sbjct: 874 IGSKRLKVQLKRSKDAAKPY 893
>WB|WBGene00006807 [details] [associations]
symbol:unc-75 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0016607
"nuclear speck" evidence=IDA] [GO:0032224 "positive regulation of
synaptic transmission, cholinergic" evidence=IMP] [GO:0032230
"positive regulation of synaptic transmission, GABAergic"
evidence=IMP] [GO:0016071 "mRNA metabolic process" evidence=ISS]
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0007271 "synaptic
transmission, cholinergic" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0016071 GO:GO:0000166 GO:GO:0016607 GO:GO:0003729
Gene3D:3.30.70.330 GO:GO:0032230 GO:GO:0007271 HSSP:P19339
KO:K13207 GeneTree:ENSGT00560000076837 GO:GO:0032224 EMBL:Z81473
EMBL:AY342388 PIR:T19347 RefSeq:NP_492958.3 UniGene:Cel.20354
ProteinModelPortal:G5EE68 SMR:G5EE68 IntAct:G5EE68
EnsemblMetazoa:C17D12.2 GeneID:182722 KEGG:cel:CELE_C17D12.2
CTD:182722 WormBase:C17D12.2 OMA:SHAQTEN NextBio:918598
Uniprot:G5EE68
Length = 514
Score = 239 (89.2 bits), Expect = 2.0e-19, P = 2.0e-19
Identities = 50/81 (61%), Positives = 60/81 (74%)
Query: 1 MFLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGF 60
MF PFG+++S+KVF+DRATNQSKCFG FVS+DN S+ AI AMNGF
Sbjct: 448 MFAPFGHIVSAKVFVDRATNQSKCFG--------------FVSYDNIHSSQAAITAMNGF 493
Query: 61 QIGMKRLKVQLKRPKDAARPY 81
QIGMKRLKVQLKRP++ +RPY
Sbjct: 494 QIGMKRLKVQLKRPRNESRPY 514
>UNIPROTKB|K7EJD7 [details] [associations]
symbol:CELF4 "CUGBP Elav-like family member 4" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
Gene3D:3.30.70.330 HGNC:HGNC:14015 EMBL:AC015961 EMBL:AC090386
EMBL:AC093332 EMBL:AC129908 Ensembl:ENST00000589386 Uniprot:K7EJD7
Length = 185
Score = 230 (86.0 bits), Expect = 3.1e-19, P = 3.1e-19
Identities = 51/67 (76%), Positives = 52/67 (77%)
Query: 1 MFLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGF 60
MFLPFGNVISSKVF+DRATNQSKCFG FVSFDNPASA TAIQAMNGF
Sbjct: 133 MFLPFGNVISSKVFVDRATNQSKCFG--------------FVSFDNPASAQTAIQAMNGF 178
Query: 61 QIGMKRL 67
QIGMKRL
Sbjct: 179 QIGMKRL 185
>FB|FBgn0000114 [details] [associations]
symbol:aret "arrest" species:7227 "Drosophila melanogaster"
[GO:0048477 "oogenesis" evidence=IMP] [GO:0007286 "spermatid
development" evidence=IMP] [GO:0007319 "negative regulation of
oskar mRNA translation" evidence=IDA;NAS;TAS] [GO:0003729 "mRNA
binding" evidence=ISS;NAS;TAS] [GO:0005515 "protein binding"
evidence=IPI] [GO:0030727 "germarium-derived female germ-line cyst
formation" evidence=TAS] [GO:0042078 "germ-line stem cell division"
evidence=NAS] [GO:0046011 "regulation of oskar mRNA translation"
evidence=TAS] [GO:0006378 "mRNA polyadenylation" evidence=TAS]
[GO:0003730 "mRNA 3'-UTR binding" evidence=IDA;TAS] [GO:0017148
"negative regulation of translation" evidence=IMP] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0043186 "P granule"
evidence=IDA] [GO:0005634 "nucleus" evidence=IC] [GO:0000381
"regulation of alternative mRNA splicing, via spliceosome"
evidence=IMP] [GO:0003723 "RNA binding" evidence=IDA] [GO:0007281
"germ cell development" evidence=IMP] [GO:0031536 "positive
regulation of exit from mitosis" evidence=IMP] [GO:0002121
"inter-male aggressive behavior" evidence=IMP] [GO:0007476
"imaginal disc-derived wing morphogenesis" evidence=IMP]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 EMBL:AE014134 GO:GO:0007286
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0006378 GO:GO:0003730
GO:GO:0002121 HSSP:P19339 GO:GO:0007476 GO:GO:0030727 GO:GO:0007319
GO:GO:0031536 GO:GO:0042078 GeneTree:ENSGT00560000076837
GO:GO:0000381 GO:GO:0043186 FlyBase:FBgn0000114 UniGene:Dm.4487
GeneID:34648 KEGG:dme:Dmel_CG31762 CTD:34648 KO:K02177
GenomeRNAi:34648 NextBio:789496 EMBL:BT133212 RefSeq:NP_723737.1
SMR:Q8IP90 MINT:MINT-1597685 STRING:Q8IP90
EnsemblMetazoa:FBtr0080344 EnsemblMetazoa:FBtr0331645
UCSC:CG31762-RB InParanoid:Q8IP90 OMA:ASAYMST Uniprot:Q8IP90
Length = 810
Score = 232 (86.7 bits), Expect = 2.9e-18, P = 2.9e-18
Identities = 51/80 (63%), Positives = 59/80 (73%)
Query: 2 FLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQ 61
FLPFGNVIS+KVFID+ T+ SKCFG FVSFDNP SA AI+AMNGFQ
Sbjct: 746 FLPFGNVISAKVFIDKQTSLSKCFG--------------FVSFDNPDSAQVAIKAMNGFQ 791
Query: 62 IGMKRLKVQLKRPKDAARPY 81
+G KRLKVQLK+PKD+ +PY
Sbjct: 792 VGTKRLKVQLKKPKDS-KPY 810
>UNIPROTKB|Q4R535 [details] [associations]
symbol:CELF4 "CUGBP Elav-like family member 4" species:9541
"Macaca fascicularis" [GO:0048026 "positive regulation of mRNA
splicing, via spliceosome" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0008380 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 HSSP:Q92879
HOVERGEN:HBG107646 GO:GO:0048026 EMBL:AB169709
ProteinModelPortal:Q4R535 SMR:Q4R535 Uniprot:Q4R535
Length = 474
Score = 209 (78.6 bits), Expect = 1.2e-17, Sum P(2) = 1.2e-17
Identities = 41/43 (95%), Positives = 41/43 (95%)
Query: 39 FGFVSFDNPASAHTAIQAMNGFQIGMKRLKVQLKRPKDAARPY 81
FGFVSFDNPASA TAIQAMNGFQIGMKRLKVQLKRPKDA RPY
Sbjct: 432 FGFVSFDNPASAQTAIQAMNGFQIGMKRLKVQLKRPKDANRPY 474
Score = 34 (17.0 bits), Expect = 1.2e-17, Sum P(2) = 1.2e-17
Identities = 8/23 (34%), Positives = 10/23 (43%)
Query: 1 MFLPFGNVISSKVFIDRATNQSK 23
+F FG + V DR T K
Sbjct: 73 LFEEFGKIYELTVLKDRFTGMHK 95
>UNIPROTKB|A6H776 [details] [associations]
symbol:BRUNOL4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0090394 "negative regulation of excitatory postsynaptic
membrane potential" evidence=IEA] [GO:0048026 "positive regulation
of mRNA splicing, via spliceosome" evidence=IEA] [GO:0006376 "mRNA
splice site selection" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=IEA] [GO:0000381
"regulation of alternative mRNA splicing, via spliceosome"
evidence=IEA] [GO:0000380 "alternative mRNA splicing, via
spliceosome" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0000380 HOVERGEN:HBG107646
KO:K13207 GO:GO:0048026 eggNOG:NOG251494 HOGENOM:HOG000004754
GO:GO:0006376 GeneTree:ENSGT00560000076837 GO:GO:0000381 CTD:56853
OMA:EDSEKNG EMBL:DAAA02056370 EMBL:DAAA02056371 EMBL:DAAA02056372
EMBL:DAAA02056373 EMBL:DAAA02056374 EMBL:DAAA02056375
EMBL:DAAA02056376 EMBL:DAAA02056377 EMBL:DAAA02056378 EMBL:BC146142
IPI:IPI00907335 RefSeq:NP_001092538.1 UniGene:Bt.62140 SMR:A6H776
Ensembl:ENSBTAT00000006498 GeneID:535177 KEGG:bta:535177
InParanoid:A6H776 NextBio:20876649 Uniprot:A6H776
Length = 475
Score = 209 (78.6 bits), Expect = 1.2e-17, Sum P(2) = 1.2e-17
Identities = 41/43 (95%), Positives = 41/43 (95%)
Query: 39 FGFVSFDNPASAHTAIQAMNGFQIGMKRLKVQLKRPKDAARPY 81
FGFVSFDNPASA TAIQAMNGFQIGMKRLKVQLKRPKDA RPY
Sbjct: 433 FGFVSFDNPASAQTAIQAMNGFQIGMKRLKVQLKRPKDANRPY 475
Score = 34 (17.0 bits), Expect = 1.2e-17, Sum P(2) = 1.2e-17
Identities = 8/23 (34%), Positives = 10/23 (43%)
Query: 1 MFLPFGNVISSKVFIDRATNQSK 23
+F FG + V DR T K
Sbjct: 73 LFEEFGKIYELTVLKDRFTGMHK 95
>UNIPROTKB|Q9BZC1 [details] [associations]
symbol:CELF4 "CUGBP Elav-like family member 4" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003729 "mRNA binding" evidence=IEA] [GO:0006376 "mRNA splice
site selection" evidence=IEA] [GO:0090394 "negative regulation of
excitatory postsynaptic membrane potential" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0042835 "BRE binding"
evidence=ISS] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=IDA] [GO:0007281 "germ cell development"
evidence=NAS] [GO:0009790 "embryo development" evidence=NAS]
[GO:0000900 "translation repressor activity, nucleic acid binding"
evidence=NAS] [GO:0048026 "positive regulation of mRNA splicing,
via spliceosome" evidence=IDA] [GO:0000380 "alternative mRNA
splicing, via spliceosome" evidence=IDA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0009790 GO:GO:0007281
GO:GO:0000900 GO:GO:0000380 HOVERGEN:HBG107646 KO:K13207
GO:GO:0048026 eggNOG:NOG251494 GO:GO:0042835 GO:GO:0006376
GO:GO:0000381 OrthoDB:EOG4RJG30 CTD:56853 EMBL:AF329265
EMBL:AK074596 EMBL:AB209774 EMBL:BC001946 EMBL:BC004167
EMBL:BC045711 EMBL:AF248650 EMBL:AF248651 IPI:IPI00024603
IPI:IPI00384535 IPI:IPI00853216 IPI:IPI00853277 IPI:IPI00853444
RefSeq:NP_001020258.1 RefSeq:NP_001020259.1 RefSeq:NP_001020260.1
RefSeq:NP_064565.1 UniGene:Hs.435976 UniGene:Hs.600908 PDB:2DGP
PDB:2DNK PDBsum:2DGP PDBsum:2DNK ProteinModelPortal:Q9BZC1
SMR:Q9BZC1 STRING:Q9BZC1 PhosphoSite:Q9BZC1 DMDM:74761348
PRIDE:Q9BZC1 Ensembl:ENST00000334919 Ensembl:ENST00000361795
Ensembl:ENST00000412753 Ensembl:ENST00000420428 GeneID:56853
KEGG:hsa:56853 UCSC:uc002lae.2 UCSC:uc002laf.2 UCSC:uc002lag.2
UCSC:uc021uix.1 UCSC:uc021uiy.1 GeneCards:GC18M034823
HGNC:HGNC:14015 HPA:HPA037986 MIM:612679 neXtProt:NX_Q9BZC1
PharmGKB:PA25428 InParanoid:Q9BZC1 OMA:EDSEKNG PhylomeDB:Q9BZC1
ChiTaRS:CELF4 EvolutionaryTrace:Q9BZC1 GenomeRNAi:56853
NextBio:62266 ArrayExpress:Q9BZC1 Bgee:Q9BZC1 CleanEx:HS_BRUNOL4
Genevestigator:Q9BZC1 Uniprot:Q9BZC1
Length = 486
Score = 209 (78.6 bits), Expect = 1.4e-17, Sum P(2) = 1.4e-17
Identities = 41/43 (95%), Positives = 41/43 (95%)
Query: 39 FGFVSFDNPASAHTAIQAMNGFQIGMKRLKVQLKRPKDAARPY 81
FGFVSFDNPASA TAIQAMNGFQIGMKRLKVQLKRPKDA RPY
Sbjct: 444 FGFVSFDNPASAQTAIQAMNGFQIGMKRLKVQLKRPKDANRPY 486
Score = 34 (17.0 bits), Expect = 1.4e-17, Sum P(2) = 1.4e-17
Identities = 8/23 (34%), Positives = 10/23 (43%)
Query: 1 MFLPFGNVISSKVFIDRATNQSK 23
+F FG + V DR T K
Sbjct: 73 LFEEFGKIYELTVLKDRFTGMHK 95
>UNIPROTKB|Q5NVC8 [details] [associations]
symbol:CELF4 "CUGBP Elav-like family member 4" species:9601
"Pongo abelii" [GO:0048026 "positive regulation of mRNA splicing,
via spliceosome" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0008380 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 HSSP:Q92879
HOVERGEN:HBG107646 KO:K13207 GO:GO:0048026 CTD:56853 EMBL:CR859631
EMBL:CR860590 EMBL:CR926110 RefSeq:NP_001127577.1
RefSeq:NP_001128833.1 UniGene:Pab.18713 ProteinModelPortal:Q5NVC8
SMR:Q5NVC8 PRIDE:Q5NVC8 GeneID:100174655 KEGG:pon:100174655
InParanoid:Q5NVC8 Uniprot:Q5NVC8
Length = 486
Score = 209 (78.6 bits), Expect = 1.4e-17, Sum P(2) = 1.4e-17
Identities = 41/43 (95%), Positives = 41/43 (95%)
Query: 39 FGFVSFDNPASAHTAIQAMNGFQIGMKRLKVQLKRPKDAARPY 81
FGFVSFDNPASA TAIQAMNGFQIGMKRLKVQLKRPKDA RPY
Sbjct: 444 FGFVSFDNPASAQTAIQAMNGFQIGMKRLKVQLKRPKDANRPY 486
Score = 34 (17.0 bits), Expect = 1.4e-17, Sum P(2) = 1.4e-17
Identities = 8/23 (34%), Positives = 10/23 (43%)
Query: 1 MFLPFGNVISSKVFIDRATNQSK 23
+F FG + V DR T K
Sbjct: 73 LFEEFGKIYELTVLKDRFTGMHK 95
>MGI|MGI:1932407 [details] [associations]
symbol:Celf4 "CUGBP, Elav-like family member 4"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=ISO] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0003729
"mRNA binding" evidence=IDA] [GO:0005634 "nucleus" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0006376 "mRNA splice site
selection" evidence=IDA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0048026
"positive regulation of mRNA splicing, via spliceosome"
evidence=ISO] [GO:0090394 "negative regulation of excitatory
postsynaptic membrane potential" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
MGI:MGI:1932407 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
GO:GO:0003729 Gene3D:3.30.70.330 eggNOG:COG0724 GO:GO:0000380
HSSP:Q92879 HOVERGEN:HBG107646 KO:K13207 GO:GO:0048026
GO:GO:0042835 GO:GO:0006376 GeneTree:ENSGT00560000076837
GO:GO:0000381 OrthoDB:EOG4RJG30 CTD:56853 ChiTaRS:CELF4
EMBL:AF515450 EMBL:AK044072 EMBL:AK048427 EMBL:AK051458
EMBL:AC121094 EMBL:AC144938 EMBL:AC153142 EMBL:BC048405
EMBL:BC052744 EMBL:AF314173 IPI:IPI00222845 IPI:IPI00330819
IPI:IPI00470036 IPI:IPI00757837 IPI:IPI00853687 IPI:IPI00853900
IPI:IPI00853926 RefSeq:NP_001139764.1 RefSeq:NP_001139765.1
RefSeq:NP_001139766.1 RefSeq:NP_001139767.1 RefSeq:NP_001167545.1
RefSeq:NP_573458.2 UniGene:Mm.266435 ProteinModelPortal:Q7TSY6
SMR:Q7TSY6 STRING:Q7TSY6 PhosphoSite:Q7TSY6 PaxDb:Q7TSY6
PRIDE:Q7TSY6 Ensembl:ENSMUST00000025117 Ensembl:ENSMUST00000115816
GeneID:108013 KEGG:mmu:108013 UCSC:uc008ehk.2 UCSC:uc008ehl.2
UCSC:uc012ban.1 UCSC:uc012bao.1 UCSC:uc012bap.1 UCSC:uc012baq.1
OMA:SAMESIN NextBio:359881 Bgee:Q7TSY6 CleanEx:MM_BRUNOL4
Genevestigator:Q7TSY6 GO:GO:0090394 Uniprot:Q7TSY6
Length = 486
Score = 209 (78.6 bits), Expect = 1.4e-17, Sum P(2) = 1.4e-17
Identities = 41/43 (95%), Positives = 41/43 (95%)
Query: 39 FGFVSFDNPASAHTAIQAMNGFQIGMKRLKVQLKRPKDAARPY 81
FGFVSFDNPASA TAIQAMNGFQIGMKRLKVQLKRPKDA RPY
Sbjct: 444 FGFVSFDNPASAQTAIQAMNGFQIGMKRLKVQLKRPKDANRPY 486
Score = 34 (17.0 bits), Expect = 1.4e-17, Sum P(2) = 1.4e-17
Identities = 8/23 (34%), Positives = 10/23 (43%)
Query: 1 MFLPFGNVISSKVFIDRATNQSK 23
+F FG + V DR T K
Sbjct: 73 LFEEFGKIYELTVLKDRFTGMHK 95
>UNIPROTKB|Q0V9L3 [details] [associations]
symbol:celf4 "CUGBP Elav-like family member 4" species:8364
"Xenopus (Silurana) tropicalis" [GO:0048026 "positive regulation of
mRNA splicing, via spliceosome" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 HOVERGEN:HBG107646 KO:K13207
GO:GO:0048026 CTD:56853 EMBL:BC121490 RefSeq:NP_001072378.1
UniGene:Str.35078 ProteinModelPortal:Q0V9L3 SMR:Q0V9L3
GeneID:779831 KEGG:xtr:779831 Xenbase:XB-GENE-5873699
Uniprot:Q0V9L3
Length = 424
Score = 204 (76.9 bits), Expect = 2.4e-17, Sum P(2) = 2.4e-17
Identities = 40/43 (93%), Positives = 40/43 (93%)
Query: 39 FGFVSFDNPASAHTAIQAMNGFQIGMKRLKVQLKRPKDAARPY 81
FGFVSFDNPASA AIQAMNGFQIGMKRLKVQLKRPKDA RPY
Sbjct: 382 FGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQLKRPKDANRPY 424
Score = 34 (17.0 bits), Expect = 2.4e-17, Sum P(2) = 2.4e-17
Identities = 8/23 (34%), Positives = 10/23 (43%)
Query: 1 MFLPFGNVISSKVFIDRATNQSK 23
+F FG + V DR T K
Sbjct: 66 LFEEFGKIYELTVLKDRFTGMHK 88
>UNIPROTKB|F1NXF6 [details] [associations]
symbol:BRUNOL6 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000381
"regulation of alternative mRNA splicing, via spliceosome"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GeneTree:ENSGT00560000076837 GO:GO:0000381
EMBL:AADN02051058 EMBL:AADN02051059 IPI:IPI00819127
Ensembl:ENSGALT00000040113 OMA:PIHEINI Uniprot:F1NXF6
Length = 476
Score = 200 (75.5 bits), Expect = 1.2e-16, Sum P(2) = 1.2e-16
Identities = 39/43 (90%), Positives = 39/43 (90%)
Query: 39 FGFVSFDNPASAHTAIQAMNGFQIGMKRLKVQLKRPKDAARPY 81
FGFVSFDNP SA AIQAMNGFQIGMKRLKVQLKRPKDA RPY
Sbjct: 434 FGFVSFDNPTSAQAAIQAMNGFQIGMKRLKVQLKRPKDANRPY 476
Score = 34 (17.0 bits), Expect = 1.2e-16, Sum P(2) = 1.2e-16
Identities = 8/23 (34%), Positives = 10/23 (43%)
Query: 1 MFLPFGNVISSKVFIDRATNQSK 23
+F FG + V DR T K
Sbjct: 67 LFEEFGRIYELTVLKDRFTGMHK 89
>UNIPROTKB|K7ERH1 [details] [associations]
symbol:CELF4 "CUGBP Elav-like family member 4" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 PROSITE:PS50102 Gene3D:3.30.70.330
HGNC:HGNC:14015 EMBL:AC015961 EMBL:AC090386 EMBL:AC093332
EMBL:AC129908 Ensembl:ENST00000588591 Uniprot:K7ERH1
Length = 151
Score = 203 (76.5 bits), Expect = 2.3e-16, P = 2.3e-16
Identities = 40/42 (95%), Positives = 40/42 (95%)
Query: 40 GFVSFDNPASAHTAIQAMNGFQIGMKRLKVQLKRPKDAARPY 81
GFVSFDNPASA TAIQAMNGFQIGMKRLKVQLKRPKDA RPY
Sbjct: 110 GFVSFDNPASAQTAIQAMNGFQIGMKRLKVQLKRPKDANRPY 151
>UNIPROTKB|F1M3I9 [details] [associations]
symbol:Brunol4 "Protein Brunol4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00358672
Ensembl:ENSRNOT00000019548 ArrayExpress:F1M3I9 Uniprot:F1M3I9
Length = 306
Score = 203 (76.5 bits), Expect = 2.3e-16, P = 2.3e-16
Identities = 40/42 (95%), Positives = 40/42 (95%)
Query: 40 GFVSFDNPASAHTAIQAMNGFQIGMKRLKVQLKRPKDAARPY 81
GFVSFDNPASA TAIQAMNGFQIGMKRLKVQLKRPKDA RPY
Sbjct: 265 GFVSFDNPASAQTAIQAMNGFQIGMKRLKVQLKRPKDANRPY 306
>UNIPROTKB|K7EJW4 [details] [associations]
symbol:CELF4 "CUGBP Elav-like family member 4" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR012677 Gene3D:3.30.70.330 HGNC:HGNC:14015 EMBL:AC015961
EMBL:AC090386 EMBL:AC093332 EMBL:AC129908 Ensembl:ENST00000586009
Uniprot:K7EJW4
Length = 115
Score = 199 (75.1 bits), Expect = 6.0e-16, P = 6.0e-16
Identities = 41/48 (85%), Positives = 41/48 (85%)
Query: 34 VNQKCFGFVSFDNPASAHTAIQAMNGFQIGMKRLKVQLKRPKDAARPY 81
V Q FVSFDNPASA TAIQAMNGFQIGMKRLKVQLKRPKDA RPY
Sbjct: 68 VQQYAGRFVSFDNPASAQTAIQAMNGFQIGMKRLKVQLKRPKDANRPY 115
>WB|WBGene00001340 [details] [associations]
symbol:etr-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0002119 "nematode larval development" evidence=IMP] [GO:0010171
"body morphogenesis" evidence=IMP] [GO:0048477 "oogenesis"
evidence=IMP] [GO:0018991 "oviposition" evidence=IMP] [GO:0040011
"locomotion" evidence=IMP] [GO:0040002 "collagen and
cuticulin-based cuticle development" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] [GO:0006915 "apoptotic process"
evidence=IMP] [GO:0061199 "striated muscle contraction involved in
embryonic body morphogenesis" evidence=IMP] [GO:0008340
"determination of adult lifespan" evidence=IMP] [GO:0005634
"nucleus" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0008340
GO:GO:0009792 GO:GO:0018991 GO:GO:0006915 GO:GO:0002119
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0010171 GO:GO:0040011
GO:GO:0048477 GO:GO:0003676 GO:GO:0040002 KO:K13207
HOGENOM:HOG000004754 GeneTree:ENSGT00560000076837 EMBL:FO081419
UniGene:Cel.5079 GeneID:173401 KEGG:cel:CELE_T01D1.2
UCSC:T01D1.2a.1 CTD:173401 NextBio:879497 RefSeq:NP_001122631.1
ProteinModelPortal:A8DYS0 SMR:A8DYS0 IntAct:A8DYS0 STRING:A8DYS0
EnsemblMetazoa:T01D1.2f.1 EnsemblMetazoa:T01D1.2f.2
EnsemblMetazoa:T01D1.2f.3 EnsemblMetazoa:T01D1.2f.4
EnsemblMetazoa:T01D1.2f.5 EnsemblMetazoa:T01D1.2f.6
WormBase:T01D1.2f InParanoid:A8DYS0 ArrayExpress:A8DYS0
Uniprot:A8DYS0
Length = 588
Score = 186 (70.5 bits), Expect = 1.4e-13, P = 1.4e-13
Identities = 44/80 (55%), Positives = 50/80 (62%)
Query: 2 FLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQ 61
F PFG ++S+KVFID+ TN SKCFG FVS++N SA AI AMNGFQ
Sbjct: 523 FAPFGGILSAKVFIDKVTNLSKCFG--------------FVSYENAQSATNAISAMNGFQ 568
Query: 62 IGMKRLKVQLKRPKDAARPY 81
IG KRLKVQLK D PY
Sbjct: 569 IGSKRLKVQLK--VDRGNPY 586
>UNIPROTKB|K7EJ26 [details] [associations]
symbol:CELF4 "CUGBP Elav-like family member 4" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 PROSITE:PS50102 Gene3D:3.30.70.330
HGNC:HGNC:14015 EMBL:AC015961 EMBL:AC090386 EMBL:AC093332
EMBL:AC129908 Ensembl:ENST00000593271 Uniprot:K7EJ26
Length = 142
Score = 164 (62.8 bits), Expect = 3.1e-12, P = 3.1e-12
Identities = 33/34 (97%), Positives = 33/34 (97%)
Query: 40 GFVSFDNPASAHTAIQAMNGFQIGMKRLKVQLKR 73
GFVSFDNPASA TAIQAMNGFQIGMKRLKVQLKR
Sbjct: 109 GFVSFDNPASAQTAIQAMNGFQIGMKRLKVQLKR 142
>DICTYBASE|DDB_G0270634 [details] [associations]
symbol:DDB_G0270634 "putative splicing regulator"
species:44689 "Dictyostelium discoideum" [GO:0045335 "phagocytic
vesicle" evidence=IDA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
dictyBase:DDB_G0270634 EMBL:AAFI02000005 GO:GO:0045335
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
RefSeq:XP_646268.1 ProteinModelPortal:Q55D63
EnsemblProtists:DDB0233675 GeneID:8617224 KEGG:ddi:DDB_G0270634
InParanoid:Q55D63 OMA:CAFITFS ProtClustDB:CLSZ2497105
Uniprot:Q55D63
Length = 368
Score = 162 (62.1 bits), Expect = 2.2e-11, P = 2.2e-11
Identities = 40/75 (53%), Positives = 46/75 (61%)
Query: 1 MFLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGF 60
+F P+GNVISSKVFID+ T QSKCFG FVS+DN SA AIQ +NG
Sbjct: 306 LFAPYGNVISSKVFIDKNTQQSKCFG--------------FVSYDNTQSAIAAIQELNGR 351
Query: 61 QIGMKRLKVQLKRPK 75
I K+LKV KR K
Sbjct: 352 AIEGKKLKVNFKREK 366
>TAIR|locus:2825067 [details] [associations]
symbol:BRN2 "Bruno-like 2" species:3702 "Arabidopsis
thaliana" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA;ISS] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 EMBL:CP002684 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 KO:K13207 IPI:IPI00516617 RefSeq:NP_973752.1
UniGene:At.42544 ProteinModelPortal:F4I0X0 SMR:F4I0X0 PRIDE:F4I0X0
EnsemblPlants:AT1G03457.2 GeneID:839497 KEGG:ath:AT1G03457
OMA:MENEERV Uniprot:F4I0X0
Length = 438
Score = 158 (60.7 bits), Expect = 8.9e-11, P = 8.9e-11
Identities = 36/72 (50%), Positives = 46/72 (63%)
Query: 2 FLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQ 61
F PFG V+S+KVF+D+AT SKCFG F+S+D+ A+A AI MNG Q
Sbjct: 359 FQPFGKVLSAKVFVDKATGISKCFG--------------FISYDSQAAAQNAINTMNGCQ 404
Query: 62 IGMKRLKVQLKR 73
+ K+LKVQLKR
Sbjct: 405 LSGKKLKVQLKR 416
>TAIR|locus:2139340 [details] [associations]
symbol:RBP-DR1 "RNA-binding protein-defense related 1"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA;ISS]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0009626 "plant-type
hypersensitive response" evidence=IMP] [GO:0080151 "positive
regulation of salicylic acid mediated signaling pathway"
evidence=IMP] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=RCA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 EMBL:CP002687 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0030529 GO:GO:0009626
KO:K13207 eggNOG:NOG251494 OMA:SAMESIN HSSP:Q60900 GO:GO:0080151
EMBL:AY084669 EMBL:AK316961 IPI:IPI00541126 RefSeq:NP_567249.1
UniGene:At.28541 ProteinModelPortal:Q8LFS6 SMR:Q8LFS6 STRING:Q8LFS6
PaxDb:Q8LFS6 PRIDE:Q8LFS6 EnsemblPlants:AT4G03110.1 GeneID:828090
KEGG:ath:AT4G03110 TAIR:At4g03110 InParanoid:Q8LFS6
PhylomeDB:Q8LFS6 ProtClustDB:CLSN2689309 Genevestigator:Q8LFS6
Uniprot:Q8LFS6
Length = 441
Score = 154 (59.3 bits), Expect = 2.5e-10, P = 2.5e-10
Identities = 37/79 (46%), Positives = 48/79 (60%)
Query: 2 FLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQ 61
F FG V+S+KVF+D+AT SKCFG FVS+D+ A+A AI MNG
Sbjct: 369 FQSFGIVLSAKVFVDKATGVSKCFG--------------FVSYDSQAAAQNAIDMMNGRH 414
Query: 62 IGMKRLKVQLKRPKDAARP 80
+G K+LKVQLKR + +P
Sbjct: 415 LGGKKLKVQLKRDSNNGQP 433
>UNIPROTKB|B4DHA8 [details] [associations]
symbol:CELF4 "CUGBP Elav-like family member 4" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HOVERGEN:HBG107646
IPI:IPI00853277 UniGene:Hs.435976 UniGene:Hs.600908 HGNC:HGNC:14015
EMBL:AC015961 EMBL:AC090386 EMBL:AC093332 EMBL:AC129908
EMBL:AK295009 ProteinModelPortal:B4DHA8 STRING:B4DHA8
Ensembl:ENST00000588597 UCSC:uc002lai.2 Bgee:B4DHA8 Uniprot:B4DHA8
Length = 454
Score = 135 (52.6 bits), Expect = 3.0e-08, P = 3.0e-08
Identities = 25/26 (96%), Positives = 26/26 (100%)
Query: 1 MFLPFGNVISSKVFIDRATNQSKCFG 26
MFLPFGNVISSKVF+DRATNQSKCFG
Sbjct: 428 MFLPFGNVISSKVFVDRATNQSKCFG 453
>ZFIN|ZDB-GENE-120215-101 [details] [associations]
symbol:si:dkey-205h23.2 "si:dkey-205h23.2"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
ZFIN:ZDB-GENE-120215-101 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GeneTree:ENSGT00560000076837 EMBL:CU929433
Ensembl:ENSDART00000151364 Uniprot:I3IS08
Length = 188
Score = 126 (49.4 bits), Expect = 3.3e-08, P = 3.3e-08
Identities = 23/25 (92%), Positives = 25/25 (100%)
Query: 1 MFLPFGNVISSKVFIDRATNQSKCF 25
MFLPFGNVIS+KVF+DRATNQSKCF
Sbjct: 164 MFLPFGNVISAKVFVDRATNQSKCF 188
>DICTYBASE|DDB_G0291486 [details] [associations]
symbol:DDB_G0291486 "putative splicing regulator"
species:44689 "Dictyostelium discoideum" [GO:0003723 "RNA binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 dictyBase:DDB_G0291486 EMBL:AAFI02000177
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:NOG251494
RefSeq:XP_635247.1 ProteinModelPortal:Q54EJ3
EnsemblProtists:DDB0233674 GeneID:8628193 KEGG:ddi:DDB_G0291486
InParanoid:Q54EJ3 OMA:PMGNGMN Uniprot:Q54EJ3
Length = 489
Score = 126 (49.4 bits), Expect = 3.1e-07, P = 3.1e-07
Identities = 33/82 (40%), Positives = 49/82 (59%)
Query: 1 MFLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGF 60
+F +G V+S+KV++D+ T SK G FGFVS+DNPASA+ AI ++G
Sbjct: 422 LFQQYGIVVSAKVYVDKNTGVSK--G------------FGFVSYDNPASANLAISNLHGQ 467
Query: 61 QIGMKRLKVQLKRPK-DAARPY 81
+ K+LKV LK+ ++PY
Sbjct: 468 MMAGKKLKVSLKQTSGQGSQPY 489
>GENEDB_PFALCIPARUM|MAL8P1.40 [details] [associations]
symbol:MAL8P1.40 "RNA-binding protein,
putative" species:5833 "Plasmodium falciparum" [GO:0003723 "RNA
binding" evidence=ISS] [GO:0006417 "regulation of translation"
evidence=ISS] InterPro:IPR000504 InterPro:IPR001202
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00397 PROSITE:PS01159
PROSITE:PS50020 PROSITE:PS50102 SMART:SM00360 SMART:SM00456
GO:GO:0006417 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
Gene3D:2.20.70.10 SUPFAM:SSF51045 EMBL:AL844507 HSSP:Q61051
RefSeq:XP_001349292.1 ProteinModelPortal:Q8IB66 IntAct:Q8IB66
MINT:MINT-1560303 EnsemblProtists:MAL8P1.40:mRNA GeneID:2655381
KEGG:pfa:MAL8P1.40 EuPathDB:PlasmoDB:PF3D7_0823200
HOGENOM:HOG000282627 OMA:QHFQHFG ProtClustDB:CLSZ2431748
Uniprot:Q8IB66
Length = 286
Score = 112 (44.5 bits), Expect = 4.0e-06, P = 4.0e-06
Identities = 23/47 (48%), Positives = 32/47 (68%)
Query: 30 RKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQIGMKRLKVQLKRPKD 76
R + K +GFVSF+NP SA AI+ M+GF + K LKVQLK+ ++
Sbjct: 183 RDANGRNKGYGFVSFNNPESALNAIKGMHGFYVSGKHLKVQLKKGEE 229
>UNIPROTKB|Q8IB66 [details] [associations]
symbol:MAL8P1.40 "RNA binding protein, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0003723 "RNA binding"
evidence=ISS] [GO:0006417 "regulation of translation" evidence=ISS]
InterPro:IPR000504 InterPro:IPR001202 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00397 PROSITE:PS01159 PROSITE:PS50020
PROSITE:PS50102 SMART:SM00360 SMART:SM00456 GO:GO:0006417
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 Gene3D:2.20.70.10
SUPFAM:SSF51045 EMBL:AL844507 HSSP:Q61051 RefSeq:XP_001349292.1
ProteinModelPortal:Q8IB66 IntAct:Q8IB66 MINT:MINT-1560303
EnsemblProtists:MAL8P1.40:mRNA GeneID:2655381 KEGG:pfa:MAL8P1.40
EuPathDB:PlasmoDB:PF3D7_0823200 HOGENOM:HOG000282627 OMA:QHFQHFG
ProtClustDB:CLSZ2431748 Uniprot:Q8IB66
Length = 286
Score = 112 (44.5 bits), Expect = 4.0e-06, P = 4.0e-06
Identities = 23/47 (48%), Positives = 32/47 (68%)
Query: 30 RKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQIGMKRLKVQLKRPKD 76
R + K +GFVSF+NP SA AI+ M+GF + K LKVQLK+ ++
Sbjct: 183 RDANGRNKGYGFVSFNNPESALNAIKGMHGFYVSGKHLKVQLKKGEE 229
>TAIR|locus:2160210 [details] [associations]
symbol:RBP45A "RNA-binding protein 45A" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS] [GO:0008143 "poly(A) RNA binding" evidence=ISS]
[GO:0005829 "cytosol" evidence=IDA] [GO:0009220 "pyrimidine
ribonucleotide biosynthetic process" evidence=RCA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005829 GO:GO:0005634 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 eggNOG:COG0724 EMBL:AB005232 GO:GO:0008143
HSSP:Q61474 HOGENOM:HOG000186228 EMBL:AF324983 EMBL:BT029545
IPI:IPI00522054 RefSeq:NP_568815.1 UniGene:At.19141
ProteinModelPortal:Q9FPJ8 SMR:Q9FPJ8 IntAct:Q9FPJ8 STRING:Q9FPJ8
PRIDE:Q9FPJ8 EnsemblPlants:AT5G54900.1 GeneID:835581
KEGG:ath:AT5G54900 TAIR:At5g54900 InParanoid:Q9FPJ8 OMA:EARTLWI
PhylomeDB:Q9FPJ8 ProtClustDB:CLSN2917762 Genevestigator:Q9FPJ8
Uniprot:Q9FPJ8
Length = 387
Score = 79 (32.9 bits), Expect = 6.0e-06, Sum P(2) = 6.0e-06
Identities = 18/50 (36%), Positives = 30/50 (60%)
Query: 25 FGEC-NRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQIGMKRLKVQLKR 73
FGE + K+ ++C GFV + N ASA A+ +NG Q+G + +++ R
Sbjct: 283 FGELLHVKIPPGKRC-GFVQYANKASAEHALSVLNGTQLGGQSIRLSWGR 331
Score = 54 (24.1 bits), Expect = 6.0e-06, Sum P(2) = 6.0e-06
Identities = 10/22 (45%), Positives = 16/22 (72%)
Query: 5 FGNVISSKVFIDRATNQSKCFG 26
+G+V +KV +DR T +SK +G
Sbjct: 178 YGSVKGAKVVLDRTTGRSKGYG 199
>GENEDB_PFALCIPARUM|PFL1745c [details] [associations]
symbol:PFL1745c "clustered-asparagine-rich
protein" species:5833 "Plasmodium falciparum" [GO:0003723 "RNA
binding" evidence=ISS] [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000504 InterPro:IPR001202 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00397 PROSITE:PS01159 PROSITE:PS50020
PROSITE:PS50102 SMART:SM00360 SMART:SM00456 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AE014188 Gene3D:2.20.70.10
SUPFAM:SSF51045 RefSeq:XP_001350755.2 ProteinModelPortal:Q8I562
IntAct:Q8I562 MINT:MINT-1548460 PRIDE:Q8I562
EnsemblProtists:PFL1745c:mRNA GeneID:811401 KEGG:pfa:PFL1745c
EuPathDB:PlasmoDB:PF3D7_1236100 HOGENOM:HOG000283459 Uniprot:Q8I562
Length = 445
Score = 111 (44.1 bits), Expect = 1.1e-05, P = 1.1e-05
Identities = 33/72 (45%), Positives = 39/72 (54%)
Query: 2 FLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQ 61
F FGN+ISSK+ D S G FGFVS+DN SA AIQ MNG+
Sbjct: 380 FCCFGNIISSKIQRDSTGRNS---G------------FGFVSYDNVISAQHAIQFMNGYF 424
Query: 62 IGMKRLKVQLKR 73
+ K LKVQLK+
Sbjct: 425 VNNKYLKVQLKK 436
>UNIPROTKB|Q8I562 [details] [associations]
symbol:PFL1745c "Clustered-asparagine-rich protein"
species:36329 "Plasmodium falciparum 3D7" [GO:0003723 "RNA binding"
evidence=ISS] [GO:0005575 "cellular_component" evidence=ND]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR001202 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00397
PROSITE:PS01159 PROSITE:PS50020 PROSITE:PS50102 SMART:SM00360
SMART:SM00456 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:AE014188 Gene3D:2.20.70.10 SUPFAM:SSF51045
RefSeq:XP_001350755.2 ProteinModelPortal:Q8I562 IntAct:Q8I562
MINT:MINT-1548460 PRIDE:Q8I562 EnsemblProtists:PFL1745c:mRNA
GeneID:811401 KEGG:pfa:PFL1745c EuPathDB:PlasmoDB:PF3D7_1236100
HOGENOM:HOG000283459 Uniprot:Q8I562
Length = 445
Score = 111 (44.1 bits), Expect = 1.1e-05, P = 1.1e-05
Identities = 33/72 (45%), Positives = 39/72 (54%)
Query: 2 FLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQ 61
F FGN+ISSK+ D S G FGFVS+DN SA AIQ MNG+
Sbjct: 380 FCCFGNIISSKIQRDSTGRNS---G------------FGFVSYDNVISAQHAIQFMNGYF 424
Query: 62 IGMKRLKVQLKR 73
+ K LKVQLK+
Sbjct: 425 VNNKYLKVQLKK 436
>UNIPROTKB|D4A288 [details] [associations]
symbol:D4A288 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 OrthoDB:EOG469QV2
IPI:IPI00358787 ProteinModelPortal:D4A288
Ensembl:ENSRNOT00000039637 Uniprot:D4A288
Length = 291
Score = 101 (40.6 bits), Expect = 6.8e-05, P = 6.8e-05
Identities = 25/69 (36%), Positives = 39/69 (56%)
Query: 4 PFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAM--NGFQ 61
P+G ++S+K +D+ TN KC G +GFV FD+P+SAH A+ A+ +G Q
Sbjct: 47 PYGKIVSTKAILDKTTN--KCKG------------YGFVDFDSPSSAHKAVTALKASGMQ 92
Query: 62 IGMKRLKVQ 70
M + + Q
Sbjct: 93 AQMAKQQEQ 101
>UNIPROTKB|E7EPF2 [details] [associations]
symbol:RBMS1 "RNA-binding motif,
single-stranded-interacting protein 1" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC092153 EMBL:AC104598
EMBL:AC131754 HGNC:HGNC:9907 ChiTaRS:RBMS1 EMBL:AC133105
IPI:IPI01011353 ProteinModelPortal:E7EPF2 SMR:E7EPF2
Ensembl:ENST00000428519 ArrayExpress:E7EPF2 Bgee:E7EPF2
Uniprot:E7EPF2
Length = 128
Score = 94 (38.1 bits), Expect = 8.1e-05, P = 8.1e-05
Identities = 23/71 (32%), Positives = 37/71 (52%)
Query: 4 PFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQIG 63
P+G ++S+K +D+ TN KC G +GFV FD+PA+A A+ A+ +
Sbjct: 51 PYGKIVSTKAILDKTTN--KCKG------------YGFVDFDSPAAAQKAVSALKASGVQ 96
Query: 64 MKRLKVQLKRP 74
+ K Q + P
Sbjct: 97 AQMAKQQEQDP 107
>UNIPROTKB|F6W1U9 [details] [associations]
symbol:RBMS2 "RNA-binding motif,
single-stranded-interacting protein 2" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC090681 HGNC:HGNC:9909
EMBL:AC097104 IPI:IPI01022449 ProteinModelPortal:F6W1U9 SMR:F6W1U9
Ensembl:ENST00000545007 ArrayExpress:F6W1U9 Bgee:F6W1U9
Uniprot:F6W1U9
Length = 147
Score = 94 (38.1 bits), Expect = 8.1e-05, P = 8.1e-05
Identities = 23/68 (33%), Positives = 39/68 (57%)
Query: 4 PFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAM--NGFQ 61
P+G ++S+K +D+ TN KC G +GFV FD+P++A A+ A+ +G Q
Sbjct: 78 PYGKIVSTKAILDKTTN--KCKG------------YGFVDFDSPSAAQKAVTALKASGVQ 123
Query: 62 IGMKRLKV 69
M +++V
Sbjct: 124 AQMAKVRV 131
>MGI|MGI:1861774 [details] [associations]
symbol:Rbms1 "RNA binding motif, single stranded interacting
protein 1" species:10090 "Mus musculus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006260 "DNA replication" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 MGI:MGI:1861774 GO:GO:0005634
GO:GO:0000166 GO:GO:0003677 GO:GO:0006260 Gene3D:3.30.70.330
GO:GO:0003723 GeneTree:ENSGT00630000089747 CTD:5937
eggNOG:NOG320163 HOGENOM:HOG000008467 HOVERGEN:HBG053108
OrthoDB:EOG469QV2 ChiTaRS:RBMS1 EMBL:AB026582 EMBL:AB026569
EMBL:AK135280 EMBL:AK147109 EMBL:AL928581 EMBL:AL929012
EMBL:BC016501 EMBL:BC056609 EMBL:BC057866 IPI:IPI00127323
IPI:IPI00462043 IPI:IPI00990210 RefSeq:NP_001135403.1
RefSeq:NP_064692.2 UniGene:Mm.259667 UniGene:Mm.482338
ProteinModelPortal:Q91W59 SMR:Q91W59 PhosphoSite:Q91W59
PaxDb:Q91W59 PRIDE:Q91W59 Ensembl:ENSMUST00000028347
Ensembl:ENSMUST00000112509 GeneID:56878 KEGG:mmu:56878
UCSC:uc008jus.2 UCSC:uc008jut.2 InParanoid:Q91W59 NextBio:313461
Bgee:Q91W59 Genevestigator:Q91W59 GermOnline:ENSMUSG00000026970
Uniprot:Q91W59
Length = 403
Score = 102 (41.0 bits), Expect = 9.1e-05, P = 9.1e-05
Identities = 26/69 (37%), Positives = 39/69 (56%)
Query: 4 PFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAM--NGFQ 61
P+G ++S+K +D+ATN KC G +GFV FD+PA+A A+ A+ NG Q
Sbjct: 84 PYGKIVSTKAILDKATN--KCKG------------YGFVDFDSPAAAQKAVSALKANGVQ 129
Query: 62 IGMKRLKVQ 70
M + + Q
Sbjct: 130 AQMAKQQEQ 138
>TAIR|locus:2116322 [details] [associations]
symbol:ATRBP45C species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005829 "cytosol" evidence=IDA] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=RCA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005829
GO:GO:0005634 EMBL:CP002687 EMBL:AL161566 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 EMBL:AL035440 HSSP:P19339
GO:GO:0008143 OMA:YANRACA HOGENOM:HOG000186228 EMBL:AF370339
EMBL:AY054487 EMBL:AY062999 EMBL:AY093292 IPI:IPI00516600
PIR:T04823 RefSeq:NP_567764.1 UniGene:At.47594 UniGene:At.67098
UniGene:At.67775 ProteinModelPortal:Q93W34 SMR:Q93W34 IntAct:Q93W34
STRING:Q93W34 PRIDE:Q93W34 EnsemblPlants:AT4G27000.1 GeneID:828808
KEGG:ath:AT4G27000 TAIR:At4g27000 ProtClustDB:CLSN2917618
Genevestigator:Q93W34 Uniprot:Q93W34
Length = 415
Score = 76 (31.8 bits), Expect = 0.00020, Sum P(2) = 0.00020
Identities = 17/50 (34%), Positives = 29/50 (58%)
Query: 25 FGEC-NRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQIGMKRLKVQLKR 73
FGE + K+ ++C GFV + N A A A+ +NG Q+G + +++ R
Sbjct: 301 FGELVHVKIPAGKRC-GFVQYANRACAEQALSVLNGTQLGGQSIRLSWGR 349
Score = 43 (20.2 bits), Expect = 0.00020, Sum P(2) = 0.00020
Identities = 9/22 (40%), Positives = 14/22 (63%)
Query: 5 FGNVISSKVFIDRATNQSKCFG 26
+ +V +KV DR T +SK +G
Sbjct: 197 YSSVKGAKVVNDRTTGRSKGYG 218
>DICTYBASE|DDB_G0270436 [details] [associations]
symbol:DDB_G0270436 species:44689 "Dictyostelium
discoideum" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
dictyBase:DDB_G0270436 EMBL:AAFI02000005 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724 RefSeq:XP_646802.1
ProteinModelPortal:Q55BM9 EnsemblProtists:DDB0191059 GeneID:8617775
KEGG:ddi:DDB_G0270436 InParanoid:Q55BM9 OMA:DICNVFV
ProtClustDB:CLSZ2846937 Uniprot:Q55BM9
Length = 521
Score = 100 (40.3 bits), Expect = 0.00022, P = 0.00022
Identities = 26/59 (44%), Positives = 35/59 (59%)
Query: 25 FGEC-NRKVSVNQKC-----FGFVSFDNPASAHTAIQAMNGFQIGMKRLKVQLKRPKDA 77
FGE N KV VN K +GFV F NP +A AI+ MN +Q+G K L +L +P ++
Sbjct: 44 FGEIVNTKVMVNIKTGNSLGYGFVRFLNPENACEAIKNMNRYQVGYKTLLCKLSKPSNS 102
>RGD|1307777 [details] [associations]
symbol:Rbms1 "RNA binding motif, single stranded interacting
protein 1" species:10116 "Rattus norvegicus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
RGD:1307777 GO:GO:0005634 GO:GO:0000166 GO:GO:0003677 GO:GO:0006260
Gene3D:3.30.70.330 GO:GO:0003723 GeneTree:ENSGT00630000089747
HSSP:P29558 CTD:5937 eggNOG:NOG320163 HOGENOM:HOG000008467
HOVERGEN:HBG053108 OMA:THVQTAA EMBL:BC087094 IPI:IPI00373620
RefSeq:NP_001012184.1 UniGene:Rn.98522 ProteinModelPortal:Q5PQP1
SMR:Q5PQP1 PRIDE:Q5PQP1 Ensembl:ENSRNOT00000011682 GeneID:362138
KEGG:rno:362138 UCSC:RGD:1307777 InParanoid:Q5PQP1 NextBio:678788
ArrayExpress:Q5PQP1 Genevestigator:Q5PQP1 Uniprot:Q5PQP1
Length = 403
Score = 98 (39.6 bits), Expect = 0.00025, P = 0.00025
Identities = 24/71 (33%), Positives = 38/71 (53%)
Query: 4 PFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQIG 63
P+G ++S+K +D+ATN KC G +GFV FD+PA+A A+ A+ +
Sbjct: 84 PYGKIVSTKAILDKATN--KCKG------------YGFVDFDSPAAAQKAVSALKASGVQ 129
Query: 64 MKRLKVQLKRP 74
+ K Q + P
Sbjct: 130 AQMAKQQEQDP 140
>UNIPROTKB|Q5PQP1 [details] [associations]
symbol:Rbms1 "RNA-binding motif,
single-stranded-interacting protein 1" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 RGD:1307777 GO:GO:0005634
GO:GO:0000166 GO:GO:0003677 GO:GO:0006260 Gene3D:3.30.70.330
GO:GO:0003723 GeneTree:ENSGT00630000089747 HSSP:P29558 CTD:5937
eggNOG:NOG320163 HOGENOM:HOG000008467 HOVERGEN:HBG053108
OMA:THVQTAA EMBL:BC087094 IPI:IPI00373620 RefSeq:NP_001012184.1
UniGene:Rn.98522 ProteinModelPortal:Q5PQP1 SMR:Q5PQP1 PRIDE:Q5PQP1
Ensembl:ENSRNOT00000011682 GeneID:362138 KEGG:rno:362138
UCSC:RGD:1307777 InParanoid:Q5PQP1 NextBio:678788
ArrayExpress:Q5PQP1 Genevestigator:Q5PQP1 Uniprot:Q5PQP1
Length = 403
Score = 98 (39.6 bits), Expect = 0.00025, P = 0.00025
Identities = 24/71 (33%), Positives = 38/71 (53%)
Query: 4 PFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQIG 63
P+G ++S+K +D+ATN KC G +GFV FD+PA+A A+ A+ +
Sbjct: 84 PYGKIVSTKAILDKATN--KCKG------------YGFVDFDSPAAAQKAVSALKASGVQ 129
Query: 64 MKRLKVQLKRP 74
+ K Q + P
Sbjct: 130 AQMAKQQEQDP 140
>UNIPROTKB|D4A6H0 [details] [associations]
symbol:Rbms1 "RNA-binding motif,
single-stranded-interacting protein 1" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 RGD:1307777 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 OrthoDB:EOG469QV2 IPI:IPI00567364
ProteinModelPortal:D4A6H0 Ensembl:ENSRNOT00000047180
ArrayExpress:D4A6H0 Uniprot:D4A6H0
Length = 411
Score = 98 (39.6 bits), Expect = 0.00025, P = 0.00025
Identities = 24/71 (33%), Positives = 38/71 (53%)
Query: 4 PFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQIG 63
P+G ++S+K +D+ATN KC G +GFV FD+PA+A A+ A+ +
Sbjct: 76 PYGKIVSTKAILDKATN--KCKG------------YGFVDFDSPAAAQKAVSALKASGVQ 121
Query: 64 MKRLKVQLKRP 74
+ K Q + P
Sbjct: 122 AQMAKQQEQDP 132
>UNIPROTKB|Q5U259 [details] [associations]
symbol:elavl1-b "ELAV-like protein 1-B" species:8355
"Xenopus laevis" [GO:0003730 "mRNA 3'-UTR binding" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0005938 "cell cortex" evidence=IDA] [GO:0007369
"gastrulation" evidence=ISS] [GO:0008266 "poly(U) RNA binding"
evidence=ISS] [GO:0008298 "intracellular mRNA localization"
evidence=IMP] [GO:0030529 "ribonucleoprotein complex" evidence=IPI]
[GO:0048255 "mRNA stabilization" evidence=ISS] [GO:0051259 "protein
oligomerization" evidence=ISS] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0005938 GO:GO:0005634 GO:GO:0008266 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730 GO:GO:0030529
GO:GO:0008298 GO:GO:0007369 HOVERGEN:HBG002295 KO:K13088
TIGRFAMs:TIGR01661 EMBL:BC086269 RefSeq:NP_001088628.1
UniGene:Xl.22886 ProteinModelPortal:Q5U259 SMR:Q5U259 PRIDE:Q5U259
GeneID:495680 KEGG:xla:495680 CTD:495680 Xenbase:XB-GENE-865489
Uniprot:Q5U259
Length = 326
Score = 96 (38.9 bits), Expect = 0.00029, P = 0.00029
Identities = 30/75 (40%), Positives = 38/75 (50%)
Query: 1 MFLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGF 60
MF PFG V + KV D TN KC G FGFV+ N A AI ++NG+
Sbjct: 263 MFGPFGAVTNVKVIRDFNTN--KCKG------------FGFVTMTNYEEAAMAIASLNGY 308
Query: 61 QIGMKRLKVQLKRPK 75
++G K L+V K K
Sbjct: 309 RLGDKTLQVSFKTSK 323
>UNIPROTKB|Q1JQ73 [details] [associations]
symbol:elavl1-a "ELAV-like protein 1-A" species:8355
"Xenopus laevis" [GO:0003730 "mRNA 3'-UTR binding" evidence=IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0005938
"cell cortex" evidence=IDA] [GO:0007369 "gastrulation"
evidence=IMP] [GO:0008266 "poly(U) RNA binding" evidence=IDA]
[GO:0008298 "intracellular mRNA localization" evidence=IMP]
[GO:0030529 "ribonucleoprotein complex" evidence=IDA;IPI]
[GO:0031440 "regulation of mRNA 3'-end processing" evidence=IC]
[GO:0048255 "mRNA stabilization" evidence=IC;IGI] [GO:0051259
"protein oligomerization" evidence=IDA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0005938 GO:GO:0005634 GO:GO:0008266 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730 GO:GO:0030529
GO:GO:0008298 GO:GO:0007369 HOVERGEN:HBG002295 TIGRFAMs:TIGR01661
KO:K13208 EMBL:U17596 EMBL:BC116459 PIR:I51675
RefSeq:NP_001084078.1 UniGene:Xl.49136 ProteinModelPortal:Q1JQ73
SMR:Q1JQ73 MINT:MINT-274235 PRIDE:Q1JQ73 GeneID:399292
KEGG:xla:399292 CTD:399292 Xenbase:XB-GENE-6254178 GO:GO:0031440
Uniprot:Q1JQ73
Length = 337
Score = 96 (38.9 bits), Expect = 0.00031, P = 0.00031
Identities = 30/75 (40%), Positives = 38/75 (50%)
Query: 1 MFLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGF 60
MF PFG V + KV D TN KC G FGFV+ N A AI ++NG+
Sbjct: 274 MFGPFGAVTNVKVIRDFNTN--KCKG------------FGFVTMTNYEEAAMAIASLNGY 319
Query: 61 QIGMKRLKVQLKRPK 75
++G K L+V K K
Sbjct: 320 RLGDKTLQVSFKTSK 334
>POMBASE|SPBP22H7.02c [details] [associations]
symbol:SPBP22H7.02c "RNA-binding protein Mrd1
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=ISO] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=ISO;IDA] [GO:0006364 "rRNA
processing" evidence=ISO] [GO:0030686 "90S preribosome"
evidence=ISO] [GO:0034462 "small-subunit processome assembly"
evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 PomBase:SPBP22H7.02c GO:GO:0005730
GO:GO:0000166 EMBL:CU329671 Gene3D:3.30.70.330
GenomeReviews:CU329671_GR GO:GO:0003723 EMBL:AB004535 GO:GO:0030686
GO:GO:0006364 eggNOG:COG0724 GO:GO:0034462 KO:K14787
HOGENOM:HOG000211156 OrthoDB:EOG4J40R3 EMBL:AB028003
RefSeq:NP_595599.1 ProteinModelPortal:O13620 STRING:O13620
PRIDE:O13620 EnsemblFungi:SPBP22H7.02c.1 GeneID:2541303
KEGG:spo:SPBP22H7.02c OMA:VFREKNV NextBio:20802413 Uniprot:O13620
Length = 833
Score = 80 (33.2 bits), Expect = 0.00031, Sum P(2) = 0.00031
Identities = 19/41 (46%), Positives = 26/41 (63%)
Query: 39 FGFVSFDNPASAHTAIQAMNGFQIGMKRLKVQLKRPK-DAA 78
FGFV F + ASA A+ AMNGF + +L+++L DAA
Sbjct: 667 FGFVEFKDKASAVAAMHAMNGFVLDGHKLEIKLSHQGVDAA 707
Score = 44 (20.5 bits), Expect = 0.00031, Sum P(2) = 0.00031
Identities = 10/25 (40%), Positives = 14/25 (56%)
Query: 1 MFLPFGNVISSKVFIDRATNQSKCF 25
+F PFG + + ID+ TN K F
Sbjct: 342 LFGPFGQLEQVHMPIDKKTNNPKGF 366
>UNIPROTKB|A4QUF0 [details] [associations]
symbol:PAB1 "Polyadenylate-binding protein, cytoplasmic and
nuclear" species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0043581 "mycelium
development" evidence=IEP] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005634 GO:GO:0005737 GO:GO:0006417 GO:GO:0000166
EMBL:CM001233 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0043581 GO:GO:0051028 eggNOG:COG0724 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
OrthoDB:EOG4QJVWJ RefSeq:XP_003712237.1 ProteinModelPortal:A4QUF0
SMR:A4QUF0 STRING:A4QUF0 EnsemblFungi:MGG_09505T0 GeneID:2680542
KEGG:mgr:MGG_09505 Uniprot:A4QUF0
Length = 762
Score = 73 (30.8 bits), Expect = 0.00033, Sum P(2) = 0.00033
Identities = 18/43 (41%), Positives = 22/43 (51%)
Query: 37 KCFGFVSFDNPASAHTAIQAMNGFQIGMKRLKVQLKRPKDAAR 79
K FGFV F NP A A+ MN + K L V L + KD +
Sbjct: 433 KGFGFVCFANPDDATKAVAEMNQRMVNNKPLYVALAQRKDVRK 475
Score = 50 (22.7 bits), Expect = 0.00033, Sum P(2) = 0.00033
Identities = 11/29 (37%), Positives = 18/29 (62%)
Query: 1 MFLPFGNVISSKVFIDRATNQSKCFGECN 29
+F +G+V SS + D+ T +S+ FG N
Sbjct: 261 LFEKYGDVTSSSLARDQETGKSRGFGFVN 289
>ZFIN|ZDB-GENE-000210-17 [details] [associations]
symbol:hug "HuG" species:7955 "Danio rerio"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-000210-17 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 EMBL:CR550302 IPI:IPI00998450
ProteinModelPortal:F1QUX1 Ensembl:ENSDART00000122728
ArrayExpress:F1QUX1 Bgee:F1QUX1 Uniprot:F1QUX1
Length = 368
Score = 96 (38.9 bits), Expect = 0.00035, P = 0.00035
Identities = 30/75 (40%), Positives = 38/75 (50%)
Query: 1 MFLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGF 60
MF PFG V + KV D N SKC G FGFV+ N A AI ++NG+
Sbjct: 305 MFGPFGAVTNVKVIRD--FNTSKCKG------------FGFVTMTNYEEAAMAISSLNGY 350
Query: 61 QIGMKRLKVQLKRPK 75
++G K L+V K K
Sbjct: 351 RLGDKVLQVSFKSSK 365
>ZFIN|ZDB-GENE-030131-4967 [details] [associations]
symbol:rbms1a "RNA binding motif, single stranded
interacting protein 1a" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-030131-4967 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GeneTree:ENSGT00630000089747 EMBL:CR792451
IPI:IPI00507907 Ensembl:ENSDART00000064860 Bgee:E7FAG7
Uniprot:E7FAG7
Length = 398
Score = 96 (38.9 bits), Expect = 0.00040, P = 0.00040
Identities = 25/69 (36%), Positives = 37/69 (53%)
Query: 4 PFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAM--NGFQ 61
P+G ++S+K +D+ TN KC G +GFV FD+P SA A+ A+ NG Q
Sbjct: 79 PYGKIVSTKAILDKTTN--KCKG------------YGFVDFDSPVSAQKAVAALKTNGVQ 124
Query: 62 IGMKRLKVQ 70
M + + Q
Sbjct: 125 AQMAKQQEQ 133
>ZFIN|ZDB-GENE-040801-51 [details] [associations]
symbol:rbms2b "RNA binding motif, single stranded
interacting protein 2b" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-040801-51 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00630000089747
eggNOG:NOG320163 HOGENOM:HOG000008467 HOVERGEN:HBG053108
OrthoDB:EOG469QV2 OMA:GHQMAPP EMBL:BX005414 EMBL:BC076435
IPI:IPI00482514 RefSeq:NP_001003541.1 UniGene:Dr.33950 SMR:Q6DGB5
Ensembl:ENSDART00000060059 GeneID:445147 KEGG:dre:445147
InParanoid:Q6DGB5 NextBio:20831910 Uniprot:Q6DGB5
Length = 400
Score = 96 (38.9 bits), Expect = 0.00040, P = 0.00040
Identities = 24/71 (33%), Positives = 37/71 (52%)
Query: 4 PFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQIG 63
P+G ++S+K +D+ TN KC G +GFV FD+PASA A+ A+ +
Sbjct: 80 PYGKIVSTKAILDKTTN--KCKG------------YGFVDFDSPASAQKAVTALKASGVQ 125
Query: 64 MKRLKVQLKRP 74
+ K Q + P
Sbjct: 126 AQMAKQQEQDP 136
>UNIPROTKB|D3K5N7 [details] [associations]
symbol:ELAVL1 "ELAV (Embryonic lethal, abnormal vision,
Drosophila)-like 1" species:9823 "Sus scrofa" [GO:0070935
"3'-UTR-mediated mRNA stabilization" evidence=IEA] [GO:0045727
"positive regulation of translation" evidence=IEA] [GO:0019901
"protein kinase binding" evidence=IEA] [GO:0017091 "AU-rich element
binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0005737
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0045727
GO:GO:0070935 CTD:1994 KO:K13088 OrthoDB:EOG4Z8XWZ
TIGRFAMs:TIGR01661 GeneTree:ENSGT00560000077064 OMA:RFGGPLH
EMBL:CU929699 EMBL:GU373715 RefSeq:NP_001182263.1 UniGene:Ssc.4516
ProteinModelPortal:D3K5N7 Ensembl:ENSSSCT00000014844
GeneID:100337681 KEGG:ssc:100337681 Uniprot:D3K5N7
Length = 326
Score = 94 (38.1 bits), Expect = 0.00048, P = 0.00048
Identities = 30/75 (40%), Positives = 38/75 (50%)
Query: 1 MFLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGF 60
MF PFG V + KV D TN KC G FGFV+ N A AI ++NG+
Sbjct: 263 MFGPFGAVTNVKVIRDFNTN--KCKG------------FGFVTMTNYEEASMAIASLNGY 308
Query: 61 QIGMKRLKVQLKRPK 75
++G K L+V K K
Sbjct: 309 RLGDKILQVSFKTNK 323
>UNIPROTKB|C9J9B2 [details] [associations]
symbol:RBMS3 "RNA-binding motif,
single-stranded-interacting protein 3" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
HOGENOM:HOG000008467 EMBL:AC012262 EMBL:AC021068 EMBL:AC092795
EMBL:AC092796 EMBL:AC097633 EMBL:AC098650 EMBL:AC099048
HGNC:HGNC:13427 ChiTaRS:RBMS3 IPI:IPI00924610
ProteinModelPortal:C9J9B2 SMR:C9J9B2 STRING:C9J9B2
Ensembl:ENST00000445033 ArrayExpress:C9J9B2 Bgee:C9J9B2
Uniprot:C9J9B2
Length = 264
Score = 92 (37.4 bits), Expect = 0.00055, P = 0.00055
Identities = 24/69 (34%), Positives = 38/69 (55%)
Query: 4 PFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAM--NGFQ 61
P+G ++S+K +D+ TNQ C G +GFV FD+PA+A A+ ++ NG Q
Sbjct: 83 PYGKIVSTKAILDKNTNQ--CKG------------YGFVDFDSPAAAQKAVASLKANGVQ 128
Query: 62 IGMKRLKVQ 70
M + + Q
Sbjct: 129 AQMAKQQEQ 137
>UNIPROTKB|E7ETU5 [details] [associations]
symbol:RBMS1 "RNA-binding motif,
single-stranded-interacting protein 1" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:AC092153 EMBL:AC104598 EMBL:AC131754 IPI:IPI00033611
HGNC:HGNC:9907 ChiTaRS:RBMS1 EMBL:AC133105 SMR:E7ETU5
Ensembl:ENST00000409075 Ensembl:ENST00000409289
Ensembl:ENST00000409972 Uniprot:E7ETU5
Length = 370
Score = 94 (38.1 bits), Expect = 0.00059, P = 0.00059
Identities = 23/71 (32%), Positives = 37/71 (52%)
Query: 4 PFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQIG 63
P+G ++S+K +D+ TN KC G +GFV FD+PA+A A+ A+ +
Sbjct: 51 PYGKIVSTKAILDKTTN--KCKG------------YGFVDFDSPAAAQKAVSALKASGVQ 96
Query: 64 MKRLKVQLKRP 74
+ K Q + P
Sbjct: 97 AQMAKQQEQDP 107
>UNIPROTKB|O73664 [details] [associations]
symbol:RBMS1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
HSSP:P26378 GeneTree:ENSGT00630000089747 CTD:5937 eggNOG:NOG320163
HOGENOM:HOG000008467 HOVERGEN:HBG053108 EMBL:AADN02058669
EMBL:AADN02058670 EMBL:AADN02058671 EMBL:AADN02058672
EMBL:AADN02058673 EMBL:AB009975 IPI:IPI00586219 RefSeq:NP_990355.1
UniGene:Gga.4540 SMR:O73664 Ensembl:ENSGALT00000018146
GeneID:395880 KEGG:gga:395880 NextBio:20815947 Uniprot:O73664
Length = 373
Score = 94 (38.1 bits), Expect = 0.00059, P = 0.00059
Identities = 23/71 (32%), Positives = 37/71 (52%)
Query: 4 PFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQIG 63
P+G ++S+K +D+ TN KC G +GFV FD+PA+A A+ A+ +
Sbjct: 51 PYGKIVSTKAILDKTTN--KCKG------------YGFVDFDSPAAAQKAVSALKASGVQ 96
Query: 64 MKRLKVQLKRP 74
+ K Q + P
Sbjct: 97 AQMAKQQEQDP 107
>UNIPROTKB|F1RPR6 [details] [associations]
symbol:RBMS1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GeneTree:ENSGT00630000089747 OMA:THVQTAA
EMBL:CU914319 Ensembl:ENSSSCT00000017300 Uniprot:F1RPR6
Length = 375
Score = 94 (38.1 bits), Expect = 0.00060, P = 0.00060
Identities = 23/71 (32%), Positives = 37/71 (52%)
Query: 4 PFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQIG 63
P+G ++S+K +D+ TN KC G +GFV FD+PA+A A+ A+ +
Sbjct: 51 PYGKIVSTKAILDKTTN--KCKG------------YGFVDFDSPAAAQKAVSALKASGVQ 96
Query: 64 MKRLKVQLKRP 74
+ K Q + P
Sbjct: 97 AQMAKQQEQDP 107
>UNIPROTKB|F1N9I5 [details] [associations]
symbol:ELAVL1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0017091 "AU-rich element binding" evidence=IEA]
[GO:0019901 "protein kinase binding" evidence=IEA] [GO:0045727
"positive regulation of translation" evidence=IEA] [GO:0070935
"3'-UTR-mediated mRNA stabilization" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0045727 GO:GO:0070935
TIGRFAMs:TIGR01661 GeneTree:ENSGT00560000077064 OMA:RFGGPLH
EMBL:AADN02063542 IPI:IPI00590347 ProteinModelPortal:F1N9I5
Ensembl:ENSGALT00000001029 Uniprot:F1N9I5
Length = 326
Score = 93 (37.8 bits), Expect = 0.00061, P = 0.00061
Identities = 30/75 (40%), Positives = 38/75 (50%)
Query: 1 MFLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGF 60
MF PFG V + KV D TN KC G FGFV+ N A AI ++NG+
Sbjct: 263 MFGPFGAVTNVKVIRDFNTN--KCKG------------FGFVTMTNYEEAAMAIASLNGY 308
Query: 61 QIGMKRLKVQLKRPK 75
++G K L+V K K
Sbjct: 309 RLGDKILQVSFKTNK 323
>UNIPROTKB|Q3ZCE2 [details] [associations]
symbol:ELAVL1 "ELAV (Embryonic lethal, abnormal vision,
Drosophila)-like 1 (Hu antigen R)" species:9913 "Bos taurus"
[GO:0070935 "3'-UTR-mediated mRNA stabilization" evidence=IEA]
[GO:0045727 "positive regulation of translation" evidence=IEA]
[GO:0019901 "protein kinase binding" evidence=IEA] [GO:0017091
"AU-rich element binding" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 GO:GO:0045727 eggNOG:COG0724 GO:GO:0070935
HOVERGEN:HBG002295 CTD:1994 HOGENOM:HOG000231162 KO:K13088
OrthoDB:EOG4Z8XWZ TIGRFAMs:TIGR01661 GeneTree:ENSGT00560000077064
OMA:RFGGPLH EMBL:DAAA02019508 EMBL:DAAA02019509 EMBL:BC102495
IPI:IPI00703347 RefSeq:NP_001069922.1 UniGene:Bt.49576 SMR:Q3ZCE2
STRING:Q3ZCE2 Ensembl:ENSBTAT00000000805 GeneID:617316
KEGG:bta:617316 InParanoid:Q3ZCE2 NextBio:20900599 Uniprot:Q3ZCE2
Length = 326
Score = 93 (37.8 bits), Expect = 0.00061, P = 0.00061
Identities = 30/75 (40%), Positives = 38/75 (50%)
Query: 1 MFLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGF 60
MF PFG V + KV D TN KC G FGFV+ N A AI ++NG+
Sbjct: 263 MFGPFGAVTNVKVIRDFNTN--KCKG------------FGFVTMTNYEEAAMAIASLNGY 308
Query: 61 QIGMKRLKVQLKRPK 75
++G K L+V K K
Sbjct: 309 RLGDKILQVSFKTNK 323
>UNIPROTKB|Q15717 [details] [associations]
symbol:ELAVL1 "ELAV-like protein 1" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0070935
"3'-UTR-mediated mRNA stabilization" evidence=IDA;IMP] [GO:0048255
"mRNA stabilization" evidence=IDA;IMP] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0005634 "nucleus" evidence=IDA] [GO:0017091
"AU-rich element binding" evidence=IDA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0003723 "RNA binding" evidence=IDA]
[GO:0019901 "protein kinase binding" evidence=IPI] [GO:0035925
"mRNA 3'-UTR AU-rich region binding" evidence=IDA] [GO:0045727
"positive regulation of translation" evidence=IDA] [GO:0003729
"mRNA binding" evidence=TAS] [GO:0007275 "multicellular organismal
development" evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS]
[GO:0005829 "cytosol" evidence=TAS] [GO:0010467 "gene expression"
evidence=TAS] [GO:0016070 "RNA metabolic process" evidence=TAS]
[GO:0016071 "mRNA metabolic process" evidence=TAS]
Reactome:REACT_71 Reactome:REACT_21257 InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0007275 GO:GO:0005829 GO:GO:0010467 GO:GO:0016071
GO:GO:0005654 GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330
GO:GO:0017091 EMBL:CH471139 GO:GO:0045727 eggNOG:COG0724
GO:GO:0070935 HOVERGEN:HBG002295 EMBL:U38175 EMBL:BT009793
EMBL:BC003376 IPI:IPI00940851 RefSeq:NP_001410.2 UniGene:Hs.184492
UniGene:Hs.713744 PDB:3HI9 PDB:4ED5 PDB:4EGL PDB:4FXV PDBsum:3HI9
PDBsum:4ED5 PDBsum:4EGL PDBsum:4FXV ProteinModelPortal:Q15717
SMR:Q15717 IntAct:Q15717 MINT:MINT-5001300 STRING:Q15717
PhosphoSite:Q15717 DMDM:20981691 PaxDb:Q15717 PeptideAtlas:Q15717
PRIDE:Q15717 DNASU:1994 Ensembl:ENST00000407627 GeneID:1994
KEGG:hsa:1994 UCSC:uc002mjb.3 CTD:1994 GeneCards:GC19M008023
HGNC:HGNC:3312 HPA:CAB005256 MIM:603466 neXtProt:NX_Q15717
PharmGKB:PA27740 HOGENOM:HOG000231162 InParanoid:Q15717 KO:K13088
OrthoDB:EOG4Z8XWZ PhylomeDB:Q15717 BindingDB:Q15717
ChEMBL:CHEMBL1250379 EvolutionaryTrace:Q15717 GenomeRNAi:1994
NextBio:8063 ArrayExpress:Q15717 Bgee:Q15717 CleanEx:HS_ELAVL1
Genevestigator:Q15717 GermOnline:ENSG00000066044 TIGRFAMs:TIGR01661
Uniprot:Q15717
Length = 326
Score = 93 (37.8 bits), Expect = 0.00061, P = 0.00061
Identities = 30/75 (40%), Positives = 38/75 (50%)
Query: 1 MFLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGF 60
MF PFG V + KV D TN KC G FGFV+ N A AI ++NG+
Sbjct: 263 MFGPFGAVTNVKVIRDFNTN--KCKG------------FGFVTMTNYEEAAMAIASLNGY 308
Query: 61 QIGMKRLKVQLKRPK 75
++G K L+V K K
Sbjct: 309 RLGDKILQVSFKTNK 323
>UNIPROTKB|Q6GLB5 [details] [associations]
symbol:elavl1 "ELAV-like protein 1" species:8364 "Xenopus
(Silurana) tropicalis" [GO:0003730 "mRNA 3'-UTR binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISS] [GO:0005938 "cell cortex" evidence=ISS]
[GO:0007369 "gastrulation" evidence=ISS] [GO:0008266 "poly(U) RNA
binding" evidence=ISS] [GO:0008298 "intracellular mRNA
localization" evidence=ISS] [GO:0030529 "ribonucleoprotein complex"
evidence=ISS] [GO:0048255 "mRNA stabilization" evidence=ISS]
[GO:0051259 "protein oligomerization" evidence=ISS]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0005938 GO:GO:0005634 GO:GO:0008266
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730
GO:GO:0030529 GO:GO:0008298 GO:GO:0007369 eggNOG:COG0724
HOVERGEN:HBG002295 CTD:1994 HOGENOM:HOG000231162 KO:K13088
OrthoDB:EOG4Z8XWZ TIGRFAMs:TIGR01661 EMBL:BC074585
RefSeq:NP_001005461.1 UniGene:Str.2596 ProteinModelPortal:Q6GLB5
SMR:Q6GLB5 STRING:Q6GLB5 PRIDE:Q6GLB5 GeneID:448062 KEGG:xtr:448062
Xenbase:XB-GENE-481800 InParanoid:Q6GLB5 Uniprot:Q6GLB5
Length = 326
Score = 93 (37.8 bits), Expect = 0.00061, P = 0.00061
Identities = 30/75 (40%), Positives = 38/75 (50%)
Query: 1 MFLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGF 60
MF PFG V + KV D TN KC G FGFV+ N A AI ++NG+
Sbjct: 263 MFGPFGAVTNVKVIRDFNTN--KCKG------------FGFVTMTNYEEAAMAIASLNGY 308
Query: 61 QIGMKRLKVQLKRPK 75
++G K L+V K K
Sbjct: 309 RLGDKTLQVFFKTSK 323
>MGI|MGI:1100851 [details] [associations]
symbol:Elavl1 "ELAV (embryonic lethal, abnormal vision)-like
1 (Hu antigen R)" species:10090 "Mus musculus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISO]
[GO:0003730 "mRNA 3'-UTR binding" evidence=ISO] [GO:0005634
"nucleus" evidence=ISO;IDA] [GO:0005737 "cytoplasm" evidence=ISO]
[GO:0006417 "regulation of translation" evidence=ISO] [GO:0017091
"AU-rich element binding" evidence=ISO] [GO:0019901 "protein kinase
binding" evidence=ISO] [GO:0035925 "mRNA 3'-UTR AU-rich region
binding" evidence=ISO] [GO:0045727 "positive regulation of
translation" evidence=ISO;IMP;IDA] [GO:0048255 "mRNA stabilization"
evidence=ISO;IMP] [GO:0070935 "3'-UTR-mediated mRNA stabilization"
evidence=ISO] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 MGI:MGI:1100851 GO:GO:0005634
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091
GO:GO:0045727 EMBL:CH466566 eggNOG:COG0724 GO:GO:0070935
HOVERGEN:HBG002295 CTD:1994 HOGENOM:HOG000231162 KO:K13088
OrthoDB:EOG4Z8XWZ TIGRFAMs:TIGR01661 EMBL:U65735 EMBL:AK080365
EMBL:U17595 IPI:IPI00108271 PIR:I49144 RefSeq:NP_034615.2
UniGene:Mm.119162 HSSP:P26378 ProteinModelPortal:P70372 SMR:P70372
DIP:DIP-46480N MINT:MINT-4094207 STRING:P70372 PhosphoSite:P70372
PaxDb:P70372 PRIDE:P70372 Ensembl:ENSMUST00000098950 GeneID:15568
KEGG:mmu:15568 GeneTree:ENSGT00560000077064 InParanoid:P70372
OMA:YANRACA ChiTaRS:ELAVL1 NextBio:288542 Bgee:P70372
Genevestigator:P70372 GermOnline:ENSMUSG00000040028 Uniprot:P70372
Length = 326
Score = 93 (37.8 bits), Expect = 0.00061, P = 0.00061
Identities = 30/75 (40%), Positives = 38/75 (50%)
Query: 1 MFLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGF 60
MF PFG V + KV D TN KC G FGFV+ N A AI ++NG+
Sbjct: 263 MFGPFGAVTNVKVIRDFNTN--KCKG------------FGFVTMTNYEEAAMAIASLNGY 308
Query: 61 QIGMKRLKVQLKRPK 75
++G K L+V K K
Sbjct: 309 RLGDKILQVSFKTNK 323
>RGD|1308649 [details] [associations]
symbol:Elavl1 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 1 (Hu antigen R)" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISO] [GO:0003730 "mRNA 3'-UTR
binding" evidence=IDA] [GO:0005634 "nucleus" evidence=IEA;ISO]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0006417 "regulation of
translation" evidence=ISO] [GO:0017091 "AU-rich element binding"
evidence=ISO] [GO:0019901 "protein kinase binding" evidence=ISO]
[GO:0035925 "mRNA 3'-UTR AU-rich region binding" evidence=ISO]
[GO:0045727 "positive regulation of translation" evidence=IEA;ISO]
[GO:0048255 "mRNA stabilization" evidence=ISO] [GO:0070935
"3'-UTR-mediated mRNA stabilization" evidence=ISO]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 RGD:1308649 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003730 eggNOG:COG0724 HOVERGEN:HBG002295 CTD:1994
HOGENOM:HOG000231162 KO:K13088 OrthoDB:EOG4Z8XWZ TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RFGGPLH EMBL:CH474084
EMBL:BC168972 EMBL:AB212679 IPI:IPI00869767 RefSeq:NP_001102318.1
UniGene:Rn.216517 SMR:B5DF91 STRING:B5DF91
Ensembl:ENSRNOT00000001415 GeneID:363854 KEGG:rno:363854
UCSC:RGD:1308649 NextBio:684342 Genevestigator:B5DF91
Uniprot:B5DF91
Length = 326
Score = 93 (37.8 bits), Expect = 0.00061, P = 0.00061
Identities = 30/75 (40%), Positives = 38/75 (50%)
Query: 1 MFLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGF 60
MF PFG V + KV D TN KC G FGFV+ N A AI ++NG+
Sbjct: 263 MFGPFGAVTNVKVIRDFNTN--KCKG------------FGFVTMTNYEEAAMAIASLNGY 308
Query: 61 QIGMKRLKVQLKRPK 75
++G K L+V K K
Sbjct: 309 RLGDKILQVSFKTNK 323
>UNIPROTKB|F1PSC4 [details] [associations]
symbol:ELAVL1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RFGGPLH EMBL:AAEX03012469
Ensembl:ENSCAFT00000029161 Uniprot:F1PSC4
Length = 334
Score = 93 (37.8 bits), Expect = 0.00064, P = 0.00064
Identities = 30/75 (40%), Positives = 38/75 (50%)
Query: 1 MFLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGF 60
MF PFG V + KV D TN KC G FGFV+ N A AI ++NG+
Sbjct: 271 MFGPFGAVTNVKVIRDFNTN--KCKG------------FGFVTMTNYEEAAMAIASLNGY 316
Query: 61 QIGMKRLKVQLKRPK 75
++G K L+V K K
Sbjct: 317 RLGDKILQVSFKTNK 331
>UNIPROTKB|E1C5J3 [details] [associations]
symbol:RBMS1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
GeneTree:ENSGT00630000089747 OMA:THVQTAA EMBL:AADN02058669
EMBL:AADN02058670 EMBL:AADN02058671 EMBL:AADN02058672
EMBL:AADN02058673 IPI:IPI00680409 ProteinModelPortal:E1C5J3
Ensembl:ENSGALT00000033119 ArrayExpress:E1C5J3 Uniprot:E1C5J3
Length = 395
Score = 94 (38.1 bits), Expect = 0.00065, P = 0.00065
Identities = 23/71 (32%), Positives = 37/71 (52%)
Query: 4 PFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQIG 63
P+G ++S+K +D+ TN KC G +GFV FD+PA+A A+ A+ +
Sbjct: 76 PYGKIVSTKAILDKTTN--KCKG------------YGFVDFDSPAAAQKAVSALKASGVQ 121
Query: 64 MKRLKVQLKRP 74
+ K Q + P
Sbjct: 122 AQMAKQQEQDP 132
>UNIPROTKB|Q3ZBP3 [details] [associations]
symbol:RBMS1 "RNA-binding motif,
single-stranded-interacting protein 1" species:9913 "Bos taurus"
[GO:0005634 "nucleus" evidence=IEA] [GO:0006260 "DNA replication"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 GO:GO:0003677
GO:GO:0006260 Gene3D:3.30.70.330 GO:GO:0003723
GeneTree:ENSGT00630000089747 EMBL:BC103186 IPI:IPI00696485
RefSeq:NP_001030438.1 UniGene:Bt.44980 UniGene:Bt.91245 HSSP:P29558
ProteinModelPortal:Q3ZBP3 SMR:Q3ZBP3 PRIDE:Q3ZBP3
Ensembl:ENSBTAT00000006826 GeneID:526135 KEGG:bta:526135 CTD:5937
eggNOG:NOG320163 HOGENOM:HOG000008467 HOVERGEN:HBG053108
InParanoid:Q3ZBP3 OMA:THVQTAA OrthoDB:EOG469QV2 NextBio:20874311
Uniprot:Q3ZBP3
Length = 403
Score = 94 (38.1 bits), Expect = 0.00067, P = 0.00067
Identities = 23/71 (32%), Positives = 37/71 (52%)
Query: 4 PFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQIG 63
P+G ++S+K +D+ TN KC G +GFV FD+PA+A A+ A+ +
Sbjct: 84 PYGKIVSTKAILDKTTN--KCKG------------YGFVDFDSPAAAQKAVSALKASGVQ 129
Query: 64 MKRLKVQLKRP 74
+ K Q + P
Sbjct: 130 AQMAKQQEQDP 140
>UNIPROTKB|E2RM13 [details] [associations]
symbol:RBMS1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GeneTree:ENSGT00630000089747 EMBL:AAEX03017702
EMBL:AAEX03017703 Ensembl:ENSCAFT00000015804 Uniprot:E2RM13
Length = 404
Score = 94 (38.1 bits), Expect = 0.00067, P = 0.00067
Identities = 23/71 (32%), Positives = 37/71 (52%)
Query: 4 PFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQIG 63
P+G ++S+K +D+ TN KC G +GFV FD+PA+A A+ A+ +
Sbjct: 82 PYGKIVSTKAILDKTTN--KCKG------------YGFVDFDSPAAAQKAVSALKASGVQ 127
Query: 64 MKRLKVQLKRP 74
+ K Q + P
Sbjct: 128 AQMAKQQEQDP 138
>UNIPROTKB|P29558 [details] [associations]
symbol:RBMS1 "RNA-binding motif,
single-stranded-interacting protein 1" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003690
"double-stranded DNA binding" evidence=NAS] [GO:0006260 "DNA
replication" evidence=NAS] [GO:0005634 "nucleus" evidence=NAS]
[GO:0003723 "RNA binding" evidence=NAS] [GO:0003697
"single-stranded DNA binding" evidence=NAS] [GO:0005515 "protein
binding" evidence=IPI] [GO:0006396 "RNA processing" evidence=TAS]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 GO:GO:0006260 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0006396 GO:GO:0003690 GO:GO:0003697
EMBL:AC092153 CTD:5937 eggNOG:NOG320163 HOVERGEN:HBG053108
OrthoDB:EOG469QV2 EMBL:D28482 EMBL:X77494 EMBL:AC104598
EMBL:AC131754 EMBL:BC012992 EMBL:BC012993 EMBL:BC018951 EMBL:X64652
IPI:IPI00033611 IPI:IPI00929296 IPI:IPI00941661 PIR:I38042
PIR:S19873 PIR:S47659 PIR:S53612 RefSeq:NP_002888.1
RefSeq:NP_058520.1 UniGene:Hs.470412 PDB:1X5O PDBsum:1X5O
ProteinModelPortal:P29558 SMR:P29558 STRING:P29558
PhosphoSite:P29558 DMDM:55977783 PaxDb:P29558 PRIDE:P29558
DNASU:5937 Ensembl:ENST00000348849 GeneID:5937 KEGG:hsa:5937
UCSC:uc002ubn.3 UCSC:uc002ubo.3 GeneCards:GC02M161128
HGNC:HGNC:9907 HPA:HPA047943 MIM:602310 neXtProt:NX_P29558
PharmGKB:PA34273 InParanoid:P29558 PhylomeDB:P29558 ChiTaRS:RBMS1
EvolutionaryTrace:P29558 GenomeRNAi:5937 NextBio:23144
ArrayExpress:P29558 Bgee:P29558 CleanEx:HS_RBMS1
Genevestigator:P29558 GermOnline:ENSG00000153250 Uniprot:P29558
Length = 406
Score = 94 (38.1 bits), Expect = 0.00067, P = 0.00067
Identities = 23/71 (32%), Positives = 37/71 (52%)
Query: 4 PFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQIG 63
P+G ++S+K +D+ TN KC G +GFV FD+PA+A A+ A+ +
Sbjct: 84 PYGKIVSTKAILDKTTN--KCKG------------YGFVDFDSPAAAQKAVSALKASGVQ 129
Query: 64 MKRLKVQLKRP 74
+ K Q + P
Sbjct: 130 AQMAKQQEQDP 140
>UNIPROTKB|D4A988 [details] [associations]
symbol:Rbms2 "Protein Rbms2" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 RGD:1304813 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 OrthoDB:EOG469QV2 IPI:IPI00567496
Ensembl:ENSRNOT00000004137 ArrayExpress:D4A988 Uniprot:D4A988
Length = 352
Score = 93 (37.8 bits), Expect = 0.00070, P = 0.00069
Identities = 23/71 (32%), Positives = 37/71 (52%)
Query: 4 PFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQIG 63
P+G ++S+K +D+ TN KC G +GFV FD+P+SA A+ A+ +
Sbjct: 76 PYGKIVSTKAILDKTTN--KCKG------------YGFVDFDSPSSAQKAVTALKASGVQ 121
Query: 64 MKRLKVQLKRP 74
+ K Q + P
Sbjct: 122 AQMAKQQEQDP 132
>UNIPROTKB|B4DVB8 [details] [associations]
symbol:ELAVL1 "ELAV-like protein 1" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0006417 "regulation of translation"
evidence=IMP] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 HOVERGEN:HBG002295 UniGene:Hs.184492
UniGene:Hs.713744 HGNC:HGNC:3312 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 EMBL:AC010336 EMBL:AC008975 EMBL:AK301013
IPI:IPI00301936 ProteinModelPortal:B4DVB8 SMR:B4DVB8 IntAct:B4DVB8
STRING:B4DVB8 PRIDE:B4DVB8 Ensembl:ENST00000351593 OMA:RFGGPLH
ArrayExpress:B4DVB8 Bgee:B4DVB8 Uniprot:B4DVB8
Length = 353
Score = 93 (37.8 bits), Expect = 0.00070, P = 0.00070
Identities = 30/75 (40%), Positives = 38/75 (50%)
Query: 1 MFLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGF 60
MF PFG V + KV D TN KC G FGFV+ N A AI ++NG+
Sbjct: 290 MFGPFGAVTNVKVIRDFNTN--KCKG------------FGFVTMTNYEEAAMAIASLNGY 335
Query: 61 QIGMKRLKVQLKRPK 75
++G K L+V K K
Sbjct: 336 RLGDKILQVSFKTNK 350
>UNIPROTKB|B4DN88 [details] [associations]
symbol:RBMS1 "RNA-binding motif,
single-stranded-interacting protein 1" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:AC092153 HOGENOM:HOG000008467 HOVERGEN:HBG053108 OMA:THVQTAA
EMBL:AC104598 EMBL:AC131754 UniGene:Hs.470412 HGNC:HGNC:9907
ChiTaRS:RBMS1 EMBL:AC133105 EMBL:AK297812 IPI:IPI00102991
SMR:B4DN88 STRING:B4DN88 Ensembl:ENST00000392753 UCSC:uc002ubi.4
Uniprot:B4DN88
Length = 419
Score = 94 (38.1 bits), Expect = 0.00070, P = 0.00070
Identities = 23/71 (32%), Positives = 37/71 (52%)
Query: 4 PFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQIG 63
P+G ++S+K +D+ TN KC G +GFV FD+PA+A A+ A+ +
Sbjct: 84 PYGKIVSTKAILDKTTN--KCKG------------YGFVDFDSPAAAQKAVSALKASGVQ 129
Query: 64 MKRLKVQLKRP 74
+ K Q + P
Sbjct: 130 AQMAKQQEQDP 140
>UNIPROTKB|E2RMT9 [details] [associations]
symbol:RBMS1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GeneTree:ENSGT00630000089747 OMA:THVQTAA
EMBL:AAEX03017702 EMBL:AAEX03017703 Ensembl:ENSCAFT00000015788
NextBio:20854045 Uniprot:E2RMT9
Length = 420
Score = 94 (38.1 bits), Expect = 0.00071, P = 0.00071
Identities = 23/71 (32%), Positives = 37/71 (52%)
Query: 4 PFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQIG 63
P+G ++S+K +D+ TN KC G +GFV FD+PA+A A+ A+ +
Sbjct: 85 PYGKIVSTKAILDKTTN--KCKG------------YGFVDFDSPAAAQKAVSALKASGVQ 130
Query: 64 MKRLKVQLKRP 74
+ K Q + P
Sbjct: 131 AQMAKQQEQDP 141
>TAIR|locus:2094098 [details] [associations]
symbol:RBP47B "RNA-binding protein 47B" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS] [GO:0008143 "poly(A) RNA binding" evidence=ISS]
[GO:0005829 "cytosol" evidence=IDA] [GO:0042991 "transcription
factor import into nucleus" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005829 GO:GO:0005634 EMBL:CP002686 GenomeReviews:BA000014_GR
GO:GO:0034605 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
EMBL:AP000419 GO:GO:0010494 eggNOG:COG0724 HSSP:P09651
GO:GO:0008143 HOGENOM:HOG000186228 EMBL:AK226472 EMBL:BT026489
EMBL:AY084821 IPI:IPI00522174 IPI:IPI00785888 RefSeq:NP_188544.1
UniGene:At.8226 ProteinModelPortal:Q0WW84 SMR:Q0WW84 STRING:Q0WW84
PaxDb:Q0WW84 PRIDE:Q0WW84 EnsemblPlants:AT3G19130.1 GeneID:821447
KEGG:ath:AT3G19130 TAIR:At3g19130 InParanoid:Q0WW84 OMA:RAVENGP
PhylomeDB:Q0WW84 ProtClustDB:CLSN2913615 Genevestigator:Q0WW84
Uniprot:Q0WW84
Length = 435
Score = 74 (31.1 bits), Expect = 0.00074, Sum P(2) = 0.00074
Identities = 19/50 (38%), Positives = 29/50 (58%)
Query: 25 FGEC-NRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQIGMKRLKVQLKR 73
FGE + K+ V + C GFV F + SA AI+++NG IG +++ R
Sbjct: 344 FGEVVSVKIPVGKGC-GFVQFADRKSAEDAIESLNGTVIGKNTVRLSWGR 392
Score = 40 (19.1 bits), Expect = 0.00074, Sum P(2) = 0.00074
Identities = 9/21 (42%), Positives = 14/21 (66%)
Query: 6 GNVISSKVFIDRATNQSKCFG 26
G V S KV ++ T+QS+ +G
Sbjct: 132 GEVSSVKVIRNKLTSQSEGYG 152
>ASPGD|ASPL0000010999 [details] [associations]
symbol:fabM species:162425 "Emericella nidulans"
[GO:0008143 "poly(A) RNA binding" evidence=ISS] [GO:0008150
"biological_process" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005634
GO:GO:0005737 GO:GO:0006417 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:BN001302 EMBL:AACD01000065
GO:GO:0051028 eggNOG:COG0724 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 HSSP:P11940
EMBL:U70731 RefSeq:XP_661604.1 ProteinModelPortal:Q5B630 SMR:Q5B630
STRING:Q5B630 PRIDE:Q5B630 EnsemblFungi:CADANIAT00004687
GeneID:2873424 KEGG:ani:AN4000.2 OMA:MIRITYS OrthoDB:EOG4QJVWJ
Uniprot:Q5B630
Length = 732
Score = 73 (30.8 bits), Expect = 0.00078, Sum P(2) = 0.00078
Identities = 18/43 (41%), Positives = 22/43 (51%)
Query: 37 KCFGFVSFDNPASAHTAIQAMNGFQIGMKRLKVQLKRPKDAAR 79
K FGFV F +P A A+ MN + K L V L + KD R
Sbjct: 417 KGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALAQRKDVRR 459
Score = 46 (21.3 bits), Expect = 0.00078, Sum P(2) = 0.00078
Identities = 12/37 (32%), Positives = 20/37 (54%)
Query: 1 MFLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQK 37
+F P+G + S+KV D A ++ E K S N++
Sbjct: 345 LFGPYGTITSAKVMRDTAPVETAT-PESETKESANKE 380
>RGD|1304813 [details] [associations]
symbol:Rbms2 "RNA binding motif, single stranded interacting
protein 2" species:10116 "Rattus norvegicus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 RGD:1304813 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 EMBL:CH474104 GeneTree:ENSGT00630000089747
eggNOG:NOG320163 HOGENOM:HOG000008467 HOVERGEN:HBG053108 CTD:5939
OMA:SQQMAPP EMBL:BC097377 IPI:IPI00371268 RefSeq:NP_001020574.1
UniGene:Rn.162925 SMR:Q4QR81 Ensembl:ENSRNOT00000048848
GeneID:288771 KEGG:rno:288771 UCSC:RGD:1304813 InParanoid:Q4QR81
NextBio:628683 Genevestigator:Q4QR81 Uniprot:Q4QR81
Length = 379
Score = 93 (37.8 bits), Expect = 0.00078, P = 0.00078
Identities = 23/71 (32%), Positives = 37/71 (52%)
Query: 4 PFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQIG 63
P+G ++S+K +D+ TN KC G +GFV FD+P+SA A+ A+ +
Sbjct: 76 PYGKIVSTKAILDKTTN--KCKG------------YGFVDFDSPSSAQKAVTALKASGVQ 121
Query: 64 MKRLKVQLKRP 74
+ K Q + P
Sbjct: 122 AQMAKQQEQDP 132
>MGI|MGI:1861776 [details] [associations]
symbol:Rbms2 "RNA binding motif, single stranded interacting
protein 2" species:10090 "Mus musculus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1861776 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GeneTree:ENSGT00630000089747
eggNOG:NOG320163 HOGENOM:HOG000008467 HOVERGEN:HBG053108
OrthoDB:EOG469QV2 CTD:5939 OMA:SQQMAPP EMBL:BC021627 EMBL:AK054482
IPI:IPI00121520 RefSeq:NP_001034169.1 RefSeq:NP_062685.2
UniGene:Mm.42247 ProteinModelPortal:Q8VC70 SMR:Q8VC70 STRING:Q8VC70
PhosphoSite:Q8VC70 PRIDE:Q8VC70 Ensembl:ENSMUST00000092033
GeneID:56516 KEGG:mmu:56516 UCSC:uc007hlm.1 InParanoid:Q8VC70
ChiTaRS:RBMS2 NextBio:312832 Bgee:Q8VC70 Genevestigator:Q8VC70
GermOnline:ENSMUSG00000040043 Uniprot:Q8VC70
Length = 383
Score = 93 (37.8 bits), Expect = 0.00079, P = 0.00079
Identities = 23/71 (32%), Positives = 37/71 (52%)
Query: 4 PFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQIG 63
P+G ++S+K +D+ TN KC G +GFV FD+P+SA A+ A+ +
Sbjct: 80 PYGKIVSTKAILDKTTN--KCKG------------YGFVDFDSPSSAQKAVTALKASGVQ 125
Query: 64 MKRLKVQLKRP 74
+ K Q + P
Sbjct: 126 AQMAKQQEQDP 136
>FB|FBgn0086675 [details] [associations]
symbol:fne "found in neurons" species:7227 "Drosophila
melanogaster" [GO:0003729 "mRNA binding" evidence=ISS;NAS]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0051252 "regulation of
RNA metabolic process" evidence=IMP] [GO:0008266 "poly(U) RNA
binding" evidence=IDA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0008049 "male courtship behavior" evidence=IMP]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0008266 GO:GO:0000166
EMBL:AE014298 GO:GO:0003729 Gene3D:3.30.70.330 eggNOG:COG0724
TIGRFAMs:TIGR01661 GeneTree:ENSGT00560000077064 KO:K13208
OMA:SNSRNCP HSSP:Q60900 GO:GO:0051252 EMBL:AF239667 EMBL:BT120384
RefSeq:NP_001096965.1 RefSeq:NP_001245646.1 RefSeq:NP_001245648.1
RefSeq:NP_001245649.1 RefSeq:NP_572842.1 UniGene:Dm.3314 SMR:Q9VYI0
IntAct:Q9VYI0 MINT:MINT-1646975 STRING:Q9VYI0
EnsemblMetazoa:FBtr0073712 EnsemblMetazoa:FBtr0113493
EnsemblMetazoa:FBtr0306738 EnsemblMetazoa:FBtr0308694
EnsemblMetazoa:FBtr0308695 EnsemblMetazoa:FBtr0333319
EnsemblMetazoa:FBtr0333320 GeneID:32245 KEGG:dme:Dmel_CG4396
UCSC:CG4396-RA CTD:32245 FlyBase:FBgn0086675 InParanoid:Q9VYI0
OrthoDB:EOG44B8HT GenomeRNAi:32245 NextBio:777561 Uniprot:Q9VYI0
Length = 356
Score = 92 (37.4 bits), Expect = 0.00091, P = 0.00091
Identities = 30/75 (40%), Positives = 38/75 (50%)
Query: 1 MFLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGF 60
+F PFG V S KV D T SKC G FGFV+ N A AIQ++NG+
Sbjct: 292 LFGPFGAVQSVKVIRDLQT--SKCKG------------FGFVTMTNYDEAVVAIQSLNGY 337
Query: 61 QIGMKRLKVQLKRPK 75
+G + L+V K K
Sbjct: 338 TLGNRVLQVSFKTNK 352
>TAIR|locus:2119495 [details] [associations]
symbol:GR-RBP2 "AT4G13850" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS;IDA] [GO:0005739
"mitochondrion" evidence=ISM;IDA] [GO:0009409 "response to cold"
evidence=IGI;IEP;IMP] [GO:0003690 "double-stranded DNA binding"
evidence=IDA] [GO:0003697 "single-stranded DNA binding"
evidence=IDA] [GO:0009414 "response to water deprivation"
evidence=IEP] [GO:0005524 "ATP binding" evidence=IDA] [GO:0001072
"RNA binding transcription antitermination factor activity"
evidence=IDA] [GO:0006970 "response to osmotic stress"
evidence=IMP] [GO:0009631 "cold acclimation" evidence=IMP]
[GO:0009651 "response to salt stress" evidence=IMP] [GO:0009845
"seed germination" evidence=IMP] [GO:0031564 "transcription
antitermination" evidence=IDA] [GO:0005507 "copper ion binding"
evidence=IDA] [GO:0005794 "Golgi apparatus" evidence=RCA]
[GO:0006364 "rRNA processing" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005739 GO:GO:0005524 EMBL:CP002687 GenomeReviews:CT486007_GR
GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0005507 GO:GO:0003723
GO:GO:0006970 GO:GO:0009845 GO:GO:0003690 GO:GO:0003697
eggNOG:COG0724 EMBL:AL035528 EMBL:AL161537 HOGENOM:HOG000276232
EMBL:AJ002892 EMBL:AY072361 EMBL:BT002197 EMBL:AY085621 EMBL:X69377
EMBL:Z18189 IPI:IPI00527583 PIR:S31443 PIR:T05254
RefSeq:NP_193121.1 UniGene:At.15585 UniGene:At.2
ProteinModelPortal:Q9SVM8 SMR:Q9SVM8 IntAct:Q9SVM8 STRING:Q9SVM8
PaxDb:Q9SVM8 PRIDE:Q9SVM8 ProMEX:Q9SVM8 EnsemblPlants:AT4G13850.1
GeneID:827019 KEGG:ath:AT4G13850 GeneFarm:3949 TAIR:At4g13850
InParanoid:Q9SVM8 OMA:ISEMDGK PhylomeDB:Q9SVM8 ProtClustDB:PLN03134
Genevestigator:Q9SVM8 Uniprot:Q9SVM8
Length = 158
Score = 85 (35.0 bits), Expect = 0.00091, P = 0.00091
Identities = 25/81 (30%), Positives = 43/81 (53%)
Query: 2 FLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQ 61
F FG+V+ +KV +DR T +S+ G FGFV+F++ +A AI M+G +
Sbjct: 55 FAHFGDVVDAKVIVDRETGRSR--G------------FGFVNFNDEGAATAAISEMDGKE 100
Query: 62 IGMKRLKVQLKRPKDAA-RPY 81
+ + ++V + +A R Y
Sbjct: 101 LNGRHIRVNPANDRPSAPRAY 121
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.325 0.136 0.412 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 81 81 0.00091 102 3 11 22 0.49 28
29 0.42 30
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 126
No. of states in DFA: 492 (52 KB)
Total size of DFA: 91 KB (2067 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 9.13u 0.08s 9.21t Elapsed: 00:00:11
Total cpu time: 9.14u 0.08s 9.22t Elapsed: 00:00:11
Start: Thu Aug 15 11:25:56 2013 End: Thu Aug 15 11:26:07 2013
WARNINGS ISSUED: 1