RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy16913
(81 letters)
>d2f9da1 d.58.7.1 (A:12-125) Pre-mRNA branch site protein p14
{Human (Homo sapiens) [TaxId: 9606]}
Length = 114
Score = 49.2 bits (117), Expect = 6e-10
Identities = 8/53 (15%), Positives = 20/53 (37%)
Query: 27 ECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQIGMKRLKVQLKRPKDAAR 79
+ + + +V +++ A A ++GF + + L V A +
Sbjct: 36 QIRVGNTPETRGTAYVVYEDIFDAKNACDHLSGFNVCNRYLVVLYYNANRAFQ 88
>d1wf2a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoproteins
C1/C2 {Human (Homo sapiens) [TaxId: 9606]}
Length = 98
Score = 48.3 bits (115), Expect = 1e-09
Identities = 17/80 (21%), Positives = 29/80 (36%), Gaps = 8/80 (10%)
Query: 9 ISSKVFI-----DRATNQS--KCFGECNRKVSVNQKC-FGFVSFDNPASAHTAIQAMNGF 60
++S+VFI F + + V + F FV + N +A A+ +G
Sbjct: 14 MNSRVFIGNLNTLVVKKSDVEAIFSKYGKIVGCSVHKGFAFVQYVNERNARAAVAGEDGR 73
Query: 61 QIGMKRLKVQLKRPKDAARP 80
I + L + L R
Sbjct: 74 MIAGQVLDINLAAEPKVNRS 93
>d1h2vz_ d.58.7.1 (Z:) CBP20, 20KDa nuclear cap-binding protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 93
Score = 47.3 bits (112), Expect = 2e-09
Identities = 12/59 (20%), Positives = 23/59 (38%)
Query: 23 KCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQIGMKRLKVQLKRPKDAARPY 81
K K+ F FV + + A A A++ +NG ++ + ++ R Y
Sbjct: 35 KKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDWDAGFKEGRQY 93
>d2dita1 d.58.7.1 (A:8-106) HIV Tat-specific factor 1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 99
Score = 46.1 bits (109), Expect = 8e-09
Identities = 10/58 (17%), Positives = 20/58 (34%), Gaps = 5/58 (8%)
Query: 23 KCFGECNRKVSV-----NQKCFGFVSFDNPASAHTAIQAMNGFQIGMKRLKVQLKRPK 75
+ + + + VSF +P A IQ ++G G +++ Q
Sbjct: 38 VECSKFGQIRKLLLFDRHPDGVASVSFRDPEEADYCIQTLDGRWFGGRQITAQAWDGT 95
>d2cpza1 d.58.7.1 (A:383-484) CUG triplet repeat RNA-binding protein
1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 102
Score = 45.1 bits (106), Expect = 2e-08
Identities = 32/42 (76%), Positives = 37/42 (88%)
Query: 38 CFGFVSFDNPASAHTAIQAMNGFQIGMKRLKVQLKRPKDAAR 79
CFGFVS+DNP SA AIQ+MNGFQIGMKRLKVQLKR K+ ++
Sbjct: 61 CFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQLKRSKNDSK 102
>d2u2fa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human
(Homo sapiens) [TaxId: 9606]}
Length = 85
Score = 44.2 bits (104), Expect = 3e-08
Identities = 13/53 (24%), Positives = 20/53 (37%)
Query: 24 CFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQIGMKRLKVQLKRPKD 76
F + K + F + + AI +NG Q+G K+L VQ
Sbjct: 30 AFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRASVGA 82
>d2cpja1 d.58.7.1 (A:65-150) Non-POU domain-containing
octamer-binding protein, NonO {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 86
Score = 43.0 bits (101), Expect = 9e-08
Identities = 10/51 (19%), Positives = 20/51 (39%)
Query: 25 FGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQIGMKRLKVQLKRPK 75
+G+ K FGF+ + A A ++ + K+L+V+
Sbjct: 32 YGKAGEVFIHKDKGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFACHS 82
>d2cpda1 d.58.7.1 (A:223-308) APOBEC1 stimulating protein {Human
(Homo sapiens) [TaxId: 9606]}
Length = 86
Score = 43.1 bits (101), Expect = 9e-08
Identities = 13/40 (32%), Positives = 22/40 (55%)
Query: 37 KCFGFVSFDNPASAHTAIQAMNGFQIGMKRLKVQLKRPKD 76
+ + FV F N A A++A+NG + ++V L +P D
Sbjct: 44 RDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLAKPVD 83
>d1x4ga1 d.58.7.1 (A:8-103) Nucleolysin TIAR {Human (Homo sapiens)
[TaxId: 9606]}
Length = 96
Score = 43.0 bits (101), Expect = 1e-07
Identities = 14/51 (27%), Positives = 21/51 (41%)
Query: 25 FGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQIGMKRLKVQLKRPK 75
FG+ +K + FV F SA AI ++NG I +K +
Sbjct: 42 FGQIMEIRVFPEKGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGKES 92
>d2cpfa1 d.58.7.1 (A:362-446) Probable RNA-binding protein 19,
Rbm19 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 85
Score = 42.7 bits (100), Expect = 1e-07
Identities = 11/53 (20%), Positives = 23/53 (43%)
Query: 24 CFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQIGMKRLKVQLKRPKD 76
+ N+ + FGFV + P A A++ + G + +L+V++
Sbjct: 30 ISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEVRISERAT 82
>d1fjca_ d.58.7.1 (A:) Nucleolin {Golden hamster (Mesocricetus
auratus) [TaxId: 10036]}
Length = 96
Score = 42.7 bits (100), Expect = 1e-07
Identities = 8/58 (13%), Positives = 17/58 (29%)
Query: 22 SKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQIGMKRLKVQLKRPKDAAR 79
K ++ F + A A ++ G +I + + + K R
Sbjct: 38 EDALEIRLVSQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEKGGTR 95
>d2adca1 d.58.7.1 (A:335-443) Polypyrimidine tract-binding protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 109
Score = 42.1 bits (98), Expect = 3e-07
Identities = 11/59 (18%), Positives = 24/59 (40%)
Query: 23 KCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQIGMKRLKVQLKRPKDAARPY 81
K+ N+K V + A A+ +NG ++ K +++ L + ++ P
Sbjct: 26 VYGDVQRVKILFNKKENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKHQNVQLPR 84
>d1nu4a_ d.58.7.1 (A:) Splicesomal U1A protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 91
Score = 41.6 bits (97), Expect = 3e-07
Identities = 12/56 (21%), Positives = 25/56 (44%)
Query: 20 NQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQIGMKRLKVQLKRPK 75
++ + S+ + FV F +SA A+++M GF K +++Q +
Sbjct: 29 SRFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQYAKTD 84
>d2cqba1 d.58.7.1 (A:1-89) Peptidyl-prolyl cis-trans isomerase E,
N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 89
Score = 41.2 bits (96), Expect = 4e-07
Identities = 17/72 (23%), Positives = 31/72 (43%), Gaps = 14/72 (19%)
Query: 4 PFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQIG 63
PFG++ ++ +D T + + F FV F+ A AI MN ++
Sbjct: 28 PFGDITDIQIPLDYETEKHRGFA--------------FVEFELAEDAAAAIDNMNESELF 73
Query: 64 MKRLKVQLKRPK 75
+ ++V L +P
Sbjct: 74 GRTIRVNLAKPM 85
>d1whwa_ d.58.7.1 (A:) Probable RNA-binding protein 19, Rbm19
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 99
Score = 41.6 bits (97), Expect = 4e-07
Identities = 13/56 (23%), Positives = 19/56 (33%)
Query: 24 CFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQIGMKRLKVQLKRPKDAAR 79
++ K F FV+F P A A ++G + L V K A
Sbjct: 37 ELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLPSTIKKEAS 92
>d1fxla1 d.58.7.1 (A:37-118) Hu antigen D (Hud) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 82
Score = 41.2 bits (96), Expect = 5e-07
Identities = 15/51 (29%), Positives = 25/51 (49%)
Query: 24 CFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQIGMKRLKVQLKRP 74
K++ +GFV++ +P A AI +NG ++ K +KV RP
Sbjct: 31 SCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARP 81
>d1x5sa1 d.58.7.1 (A:8-97) Cold-inducible RNA-binding protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 41.3 bits (96), Expect = 5e-07
Identities = 14/56 (25%), Positives = 25/56 (44%)
Query: 24 CFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQIGMKRLKVQLKRPKDAAR 79
+ + + FGFV+F+N A A+ AMNG + ++++V R
Sbjct: 34 EVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQAGKSSDNR 89
>d1cvja1 d.58.7.1 (A:11-90) Poly(A)-binding protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 80
Score = 40.7 bits (95), Expect = 6e-07
Identities = 18/73 (24%), Positives = 30/73 (41%), Gaps = 14/73 (19%)
Query: 1 MFLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGF 60
F P G ++S +V D T +S + +V+F PA A A+ MN
Sbjct: 20 KFSPAGPILSIRVCRDMITRRSLGYA--------------YVNFQQPADAERALDTMNFD 65
Query: 61 QIGMKRLKVQLKR 73
I K +++ +
Sbjct: 66 VIKGKPVRIMWSQ 78
>d2cq0a1 d.58.7.1 (A:231-320) Eukaryotic translation initiation
factor 3 subunit 4 {Human (Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 40.8 bits (95), Expect = 6e-07
Identities = 14/48 (29%), Positives = 20/48 (41%)
Query: 28 CNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQIGMKRLKVQLKRPK 75
K + K F F+SF A AI ++GF L V+ +P
Sbjct: 41 AKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVEWAKPS 88
>d2adba1 d.58.7.1 (A:177-284) Polypyrimidine tract-binding protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 108
Score = 41.2 bits (96), Expect = 8e-07
Identities = 9/55 (16%), Positives = 20/55 (36%), Gaps = 2/55 (3%)
Query: 29 NRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQI--GMKRLKVQLKRPKDAARPY 81
+ N + + + +P SA A +++G I L++ + Y
Sbjct: 37 IITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKLTSLNVKY 91
>d1b7fa2 d.58.7.1 (A:205-289) Sex-lethal protein {Drosophila
melanogaster [TaxId: 7227]}
Length = 85
Score = 40.3 bits (94), Expect = 9e-07
Identities = 12/51 (23%), Positives = 20/51 (39%), Gaps = 2/51 (3%)
Query: 23 KCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQI--GMKRLKVQL 71
K++ + FV ++ A AI A+N G + L V+L
Sbjct: 34 VQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEGGSQPLSVRL 84
>d1no8a_ d.58.7.1 (A:) Nuclear factor Aly {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 78
Score = 40.3 bits (94), Expect = 1e-06
Identities = 10/42 (23%), Positives = 17/42 (40%)
Query: 30 RKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQIGMKRLKVQL 71
S V F+ A A A++ NG + + + +QL
Sbjct: 34 YDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQL 75
>d1wg1a_ d.58.7.1 (A:) Probable RNA-binding protein KIAA1579
{Human (Homo sapiens) [TaxId: 9606]}
Length = 88
Score = 40.5 bits (94), Expect = 1e-06
Identities = 16/84 (19%), Positives = 26/84 (30%), Gaps = 10/84 (11%)
Query: 6 GNVISSKVFI---------DRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQA 56
G+ SS + + + K + V N++ N A AIQ
Sbjct: 1 GSSGSSGILVKNLPQDSNCQEVHDLLKDYDLKYCYVDRNKRTAFVT-LLNGEQAQNAIQM 59
Query: 57 MNGFQIGMKRLKVQLKRPKDAARP 80
+ + K L VQL+
Sbjct: 60 FHQYSFRGKDLIVQLQPTDALLCS 83
>d1weya_ d.58.7.1 (A:) Calcipressin-1 {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 104
Score = 40.5 bits (94), Expect = 1e-06
Identities = 8/57 (14%), Positives = 19/57 (33%)
Query: 25 FGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQIGMKRLKVQLKRPKDAARPY 81
+ + ++F NP SA A ++ + K +K+ + +
Sbjct: 34 YDKDTTFQYFKSFKRVRINFSNPLSAADARLRLHKTEFLGKEMKLYFAQTLHIGSSH 90
>d1b7fa1 d.58.7.1 (A:123-204) Sex-lethal protein {Drosophila
melanogaster [TaxId: 7227]}
Length = 82
Score = 39.6 bits (92), Expect = 2e-06
Identities = 17/74 (22%), Positives = 29/74 (39%), Gaps = 14/74 (18%)
Query: 1 MFLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGF 60
+F G + + ++ D T S + + F + + AI+ +NG
Sbjct: 22 LFRAIGPINTCRIMRDYKTGYSYGYAFVD--------------FTSEMDSQRAIKVLNGI 67
Query: 61 QIGMKRLKVQLKRP 74
+ KRLKV RP
Sbjct: 68 TVRNKRLKVSYARP 81
>d1x5ua1 d.58.7.1 (A:7-99) Splicing factor 3B subunit 4 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 93
Score = 39.6 bits (92), Expect = 2e-06
Identities = 11/49 (22%), Positives = 23/49 (46%)
Query: 28 CNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQIGMKRLKVQLKRPKD 76
+V+ + +GFV F + A AI+ M+ ++ K ++V +
Sbjct: 42 PKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVNKASAHN 90
>d1x4aa1 d.58.7.1 (A:9-103) Splicing factor, arginine/serine-rich
1, SFRS1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 95
Score = 39.7 bits (92), Expect = 2e-06
Identities = 13/48 (27%), Positives = 21/48 (43%)
Query: 28 CNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQIGMKRLKVQLKRPK 75
+ K F FV F++P A A+ +G+ RL+V+ R
Sbjct: 44 IDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPRSG 91
>d1wexa_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein
L-like {Mouse (Mus musculus) [TaxId: 10090]}
Length = 104
Score = 39.8 bits (92), Expect = 2e-06
Identities = 12/63 (19%), Positives = 19/63 (30%), Gaps = 2/63 (3%)
Query: 20 NQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAM--NGFQIGMKRLKVQLKRPKDA 77
+ FG + + K V F+N SA + I ++ K
Sbjct: 34 EALEKFGTICYVMMMPFKRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFNYSTSKRI 93
Query: 78 ARP 80
RP
Sbjct: 94 TRP 96
>d2cqia1 d.58.7.1 (A:1-90) Nucleolysin TIAR {Human (Homo sapiens)
[TaxId: 9606]}
Length = 90
Score = 39.3 bits (91), Expect = 2e-06
Identities = 13/45 (28%), Positives = 20/45 (44%)
Query: 35 NQKCFGFVSFDNPASAHTAIQAMNGFQIGMKRLKVQLKRPKDAAR 79
+ + FV F A A+ AMNG +I K +KV + +
Sbjct: 46 SNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQK 90
>d2cpea1 d.58.7.1 (A:353-453) RNA-binding protein EWS {Human (Homo
sapiens) [TaxId: 9606]}
Length = 101
Score = 39.8 bits (92), Expect = 2e-06
Identities = 18/75 (24%), Positives = 28/75 (37%), Gaps = 6/75 (8%)
Query: 1 MFLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGF 60
F G V +K K + K VS+++P +A A++ +G
Sbjct: 28 FFKQCGVVKMNKR------TGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGK 81
Query: 61 QIGMKRLKVQLKRPK 75
+LKV L R K
Sbjct: 82 DFQGSKLKVSLARKK 96
>d2cpha1 d.58.7.1 (A:454-547) Probable RNA-binding protein 19,
Rbm19 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 94
Score = 39.5 bits (92), Expect = 3e-06
Identities = 10/53 (18%), Positives = 20/53 (37%), Gaps = 1/53 (1%)
Query: 28 CNRKVSVNQKCFGFVSFDNPASAHTAIQAM-NGFQIGMKRLKVQLKRPKDAAR 79
+ + FGFV F A A A+ + + +RL ++ + +
Sbjct: 42 KKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLVLEWADSEVTVQ 94
>d1x4ba1 d.58.7.1 (A:8-110) Heterogeneous nuclear ribonucleoproteins
A2/B1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 103
Score = 39.7 bits (92), Expect = 3e-06
Identities = 10/53 (18%), Positives = 20/53 (37%), Gaps = 1/53 (1%)
Query: 24 CFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQIGMKRLKVQLKRPKD 76
S + FGFV+F + A A+ A I + ++ + ++
Sbjct: 49 DCVVMRDPASKRSRGFGFVTFSSMAEVDAAM-AARPHSIDGRVVEPKRAVARE 100
>d2cq3a1 d.58.7.1 (A:110-202) RNA-binding protein 9 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 93
Score = 38.9 bits (90), Expect = 4e-06
Identities = 12/39 (30%), Positives = 23/39 (58%)
Query: 37 KCFGFVSFDNPASAHTAIQAMNGFQIGMKRLKVQLKRPK 75
K FGFV+F+N A A A + ++G + ++++V +
Sbjct: 51 KGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATAR 89
>d1wf0a_ d.58.7.1 (A:) TAR DNA-binding protein 43, TDP-43 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 88
Score = 38.9 bits (90), Expect = 4e-06
Identities = 15/85 (17%), Positives = 27/85 (31%), Gaps = 12/85 (14%)
Query: 6 GNVISSKVFI---------DRATNQSKCFGECNR-KVSVNQKCFGFVSFDNPASAHTAIQ 55
G+ SS VF+ D +G+ + + F FV+F + A +
Sbjct: 1 GSSGSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKPFRAFAFVTFADDQIAQSLC- 59
Query: 56 AMNGFQIGMKRLKVQLKRPKDAARP 80
I + + PK +
Sbjct: 60 -GEDLIIKGISVHISNAEPKHNSNS 83
>d1rk8a_ d.58.7.1 (A:) RNA-binding protein 8 {Fruit fly
(Drosophila melanogaster) [TaxId: 7227]}
Length = 88
Score = 38.9 bits (90), Expect = 4e-06
Identities = 10/52 (19%), Positives = 21/52 (40%)
Query: 24 CFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQIGMKRLKVQLKRPK 75
+ + K + V ++ A A +A+NG +I + ++V K
Sbjct: 36 NIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWCFVK 87
>d2bz2a1 d.58.7.1 (A:35-113) Negative elongation factor E, NELF-E
{Human (Homo sapiens) [TaxId: 9606]}
Length = 79
Score = 38.1 bits (88), Expect = 5e-06
Identities = 14/53 (26%), Positives = 24/53 (45%)
Query: 23 KCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQIGMKRLKVQLKRPK 75
FG + FV+++ SA A+ +NG Q+ +LKV + R +
Sbjct: 25 SPFGNIIDLSMDPPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARKQ 77
>d1u6fa1 d.58.7.1 (A:1-139) RNA-binding protein UBP1 {Trypanosoma
cruzi [TaxId: 5693]}
Length = 139
Score = 39.1 bits (90), Expect = 7e-06
Identities = 18/53 (33%), Positives = 25/53 (47%)
Query: 24 CFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQIGMKRLKVQLKRPKD 76
+ + + +GFV F + +SA AI +NGF I KRLKV L
Sbjct: 71 SVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVALAASGH 123
>d1cvja2 d.58.7.1 (A:91-179) Poly(A)-binding protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 89
Score = 38.1 bits (88), Expect = 8e-06
Identities = 11/38 (28%), Positives = 21/38 (55%)
Query: 38 CFGFVSFDNPASAHTAIQAMNGFQIGMKRLKVQLKRPK 75
+GFV F+ +A AI+ MNG + +++ V + +
Sbjct: 49 GYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 86
>d2ghpa3 d.58.7.1 (A:206-291) U4/U6 snRNA-associated-splicing
factor PRP24 {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 86
Score = 37.8 bits (87), Expect = 1e-05
Identities = 16/64 (25%), Positives = 26/64 (40%), Gaps = 1/64 (1%)
Query: 12 KVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQIGMKRLKVQL 71
+ + + K +K C F+ F+N SA A+Q MN +G + + V L
Sbjct: 23 RESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERALQ-MNRSLLGNREISVSL 81
Query: 72 KRPK 75
K
Sbjct: 82 ADKK 85
>d1x5ta1 d.58.7.1 (A:8-90) Splicing factor 3B subunit 4 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 83
Score = 37.0 bits (85), Expect = 2e-05
Identities = 13/49 (26%), Positives = 24/49 (48%)
Query: 28 CNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQIGMKRLKVQLKRPKD 76
+ N K + F++F + ++ AI+AMNG + + + V KD
Sbjct: 32 MRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKKD 80
>d2cqca1 d.58.7.1 (A:109-191) Arginine/serine-rich splicing factor
10 {Human (Homo sapiens) [TaxId: 9606]}
Length = 83
Score = 37.0 bits (85), Expect = 2e-05
Identities = 15/69 (21%), Positives = 30/69 (43%), Gaps = 14/69 (20%)
Query: 1 MFLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGF 60
+F +G + + D+ + +S+ F FV F+N A A + NG
Sbjct: 29 VFSKYGPIADVSIVYDQQSRRSRGFA--------------FVYFENVDDAKEAKERANGM 74
Query: 61 QIGMKRLKV 69
++ +R++V
Sbjct: 75 ELDGRRIRV 83
>d2cqga1 d.58.7.1 (A:96-185) TAR DNA-binding protein 43, TDP-43
{Human (Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 37.3 bits (86), Expect = 2e-05
Identities = 9/49 (18%), Positives = 16/49 (32%), Gaps = 2/49 (4%)
Query: 28 CNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQIGMKRLKVQLKRPKD 76
+ + K FGFV F + + + I + +L K
Sbjct: 41 KKDLKTGHSKGFGFVRFTEYETQVKVMSQRH--MIDGRWCDCKLPNSKQ 87
>d1p1ta_ d.58.7.1 (A:) Cleavage stimulation factor, 64 kda subunit
{Human (Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 37.0 bits (85), Expect = 2e-05
Identities = 10/52 (19%), Positives = 24/52 (46%)
Query: 24 CFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQIGMKRLKVQLKRPK 75
F + + K +GF + + +A +A++ +NG + + L+V +
Sbjct: 37 SFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAASE 88
>d2cqha1 d.58.7.1 (A:2-81) IGF-II mRNA-binding protein 2 isoform A
{Human (Homo sapiens) [TaxId: 9606]}
Length = 80
Score = 36.6 bits (84), Expect = 2e-05
Identities = 9/54 (16%), Positives = 21/54 (38%), Gaps = 1/54 (1%)
Query: 23 KCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNG-FQIGMKRLKVQLKRPK 75
+ + + FV + + A AI+ ++G ++ K ++V K
Sbjct: 23 GDRKLPLAGQVLLKSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVDYSVSK 76
>d2disa1 d.58.7.1 (A:8-103) Hypothetical protein FLJ20273 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 96
Score = 37.0 bits (85), Expect = 2e-05
Identities = 8/42 (19%), Positives = 19/42 (45%), Gaps = 2/42 (4%)
Query: 37 KCFGFVSFDNPASAHTAIQAMNG--FQIGMKRLKVQLKRPKD 76
+ F FV +++ +A A + + Q+ ++ V P+
Sbjct: 45 RGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEI 86
>d1o0pa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human
(Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 37.3 bits (86), Expect = 2e-05
Identities = 9/45 (20%), Positives = 16/45 (35%)
Query: 32 VSVNQKCFGFVSFDNPASAHTAIQAMNGFQIGMKRLKVQLKRPKD 76
V V FV F + A+Q + G + + + + P
Sbjct: 53 VEVPGCGKIFVEFTSVFDCQKAMQGLTGRKFANRVVVTKYCDPDS 97
>d1x4ha1 d.58.7.1 (A:8-105) RNA-binding protein 28 {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 98
Score = 36.7 bits (84), Expect = 3e-05
Identities = 12/57 (21%), Positives = 22/57 (38%), Gaps = 6/57 (10%)
Query: 28 CNRKVSVNQKCFGFVSFDNPASAHTAIQAMN------GFQIGMKRLKVQLKRPKDAA 78
+ + K F F +A + A + G ++ ++LKV L +D A
Sbjct: 41 VLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDGRQLKVDLAVTRDEA 97
>d2cqda1 d.58.7.1 (A:1-103) RNA-binding region containing protein
1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 103
Score = 36.3 bits (83), Expect = 5e-05
Identities = 11/61 (18%), Positives = 22/61 (36%), Gaps = 1/61 (1%)
Query: 20 NQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQIGMKRLKVQLKRPKDAAR 79
+ + + + +GFV+ + A+A A + N I ++ V L R
Sbjct: 35 GDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNPI-IDGRKANVNLAYLGAKPR 93
Query: 80 P 80
Sbjct: 94 S 94
>d1wg4a_ d.58.7.1 (A:) Splicing factor, arginine/serine-rich 9
(SFRS9) {Mouse (Mus musculus) [TaxId: 10090]}
Length = 98
Score = 36.3 bits (83), Expect = 5e-05
Identities = 5/53 (9%), Positives = 13/53 (24%)
Query: 28 CNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQIGMKRLKVQLKRPKDAARP 80
V + G V + A++ ++ + + R
Sbjct: 41 DVCYADVQKDGMGMVEYLRKEDMEYALRKLDDTKFRSHEGETSYIRVYPERSS 93
>d2cq2a1 d.58.7.1 (A:25-125) Alkylation repair AlkB homolog 8,
ALKBH8 {Human (Homo sapiens) [TaxId: 9606]}
Length = 101
Score = 35.9 bits (82), Expect = 7e-05
Identities = 6/38 (15%), Positives = 14/38 (36%)
Query: 25 FGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQI 62
G + + K + F + + A +NG ++
Sbjct: 44 CGLVDALLMPPNKPYSFARYRTTEESKRAYVTLNGKEV 81
>d1jmta_ d.58.7.3 (A:) U2AF35
(35 KDa subunit) {Human (Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 35.8 bits (82), Expect = 9e-05
Identities = 6/44 (13%), Positives = 14/44 (31%)
Query: 28 CNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQIGMKRLKVQL 71
+ + +V F A A+ +N + + +L
Sbjct: 59 VCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPIHAEL 102
>d1fxla2 d.58.7.1 (A:119-203) Hu antigen D (Hud) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 85
Score = 34.6 bits (79), Expect = 2e-04
Identities = 11/50 (22%), Positives = 20/50 (40%)
Query: 23 KCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQIGMKRLKVQLK 72
+V+ + GF+ FD A AI+ +NG + + +K
Sbjct: 34 ITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVK 83
>d2cqpa1 d.58.7.1 (A:917-1002) RNA-binding protein 12 {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 86
Score = 34.3 bits (78), Expect = 2e-04
Identities = 9/35 (25%), Positives = 18/35 (51%)
Query: 37 KCFGFVSFDNPASAHTAIQAMNGFQIGMKRLKVQL 71
V+F++ A A+ +N IG +++K+ L
Sbjct: 51 TGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVL 85
>d1x4ea1 d.58.7.1 (A:8-79) RNA-binding motif,
single-stranded-interacting protein 2, RBMS2 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 72
Score = 34.0 bits (77), Expect = 2e-04
Identities = 12/41 (29%), Positives = 21/41 (51%)
Query: 28 CNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQIGMKRLK 68
K + K +GFV FD+P++A A+ A+ + + K
Sbjct: 31 ILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAK 71
>d1whya_ d.58.7.1 (A:) Putative RNA-binding protein 15B, Rbm15b
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 97
Score = 34.3 bits (78), Expect = 2e-04
Identities = 10/46 (21%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
Query: 35 NQKCFGFVSFDNPASAHTAIQAMNGFQIG--MKRLKVQLKRPKDAA 78
F ++ +++ +A A M GF +G +RL+V + ++
Sbjct: 51 KGDSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVDFAKSGPSS 96
>d1l3ka1 d.58.7.1 (A:8-91) Nuclear ribonucleoprotein A1 (RNP A1,
UP1) {Human (Homo sapiens) [TaxId: 9606]}
Length = 84
Score = 33.9 bits (77), Expect = 3e-04
Identities = 5/51 (9%), Positives = 16/51 (31%), Gaps = 1/51 (1%)
Query: 20 NQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQIGMKRLKVQ 70
+ + FGFV++ A+ ++ + ++ +
Sbjct: 31 GTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN-ARPHKVDGRVVEPK 80
>d1x5oa1 d.58.7.1 (A:8-108) RNA-binding motif,
single-stranded-interacting protein 1, RBMS1 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 101
Score = 34.0 bits (77), Expect = 3e-04
Identities = 9/55 (16%), Positives = 12/55 (21%)
Query: 20 NQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQIGMKRLKVQLKRP 74
R S + GF ++ I NG I P
Sbjct: 42 FGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPTEP 96
>d2ghpa1 d.58.7.1 (A:116-196) U4/U6 snRNA-associated-splicing
factor PRP24 {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 81
Score = 33.2 bits (75), Expect = 4e-04
Identities = 7/52 (13%), Positives = 17/52 (32%)
Query: 23 KCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQIGMKRLKVQLKRP 74
+ F ++ + A ++ +NG +I L ++ P
Sbjct: 29 ALSIRLPSLRFNTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKVSNP 80
>d2cpxa1 d.58.7.1 (A:291-392) RNA-binding protein 41, RBM41 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 102
Score = 33.6 bits (76), Expect = 5e-04
Identities = 11/49 (22%), Positives = 24/49 (48%)
Query: 28 CNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQIGMKRLKVQLKRPKD 76
R ++ + F++F N A A+ +NG+++ K L ++ + K
Sbjct: 51 QFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIEFGKNKK 99
>d1u1qa_ d.58.7.1 (A:) Nuclear ribonucleoprotein A1 (RNP A1, UP1)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 183
Score = 34.2 bits (77), Expect = 7e-04
Identities = 8/40 (20%), Positives = 16/40 (40%), Gaps = 1/40 (2%)
Query: 36 QKCFGFVSFDNPASAHTAIQAMNGFQIGMKRLKVQLKRPK 75
++ F FV+FD+ S + + +V+ K
Sbjct: 138 KRGFAFVTFDDHDSVDKIV-IQKYHTVNGHNCEVRKALSK 176
>d1wwha1 d.58.7.1 (A:169-249) Nucleoporin 35 {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 81
Score = 33.0 bits (75), Expect = 7e-04
Identities = 9/52 (17%), Positives = 21/52 (40%), Gaps = 2/52 (3%)
Query: 25 FGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQIGMKRLKVQLKRPKD 76
+G + V N + + + + A A+ +G G + + + +K D
Sbjct: 27 YGNILKHVMSNTGNWMHIRYQSKLQARKALS-KDGRIFG-ESIMIGVKPCID 76
>d2cq4a1 d.58.7.1 (A:132-232) RNA binding protein 23 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 101
Score = 33.1 bits (75), Expect = 7e-04
Identities = 13/75 (17%), Positives = 24/75 (32%), Gaps = 15/75 (20%)
Query: 1 MFLPFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGF 60
F G V ++ DR + +SK +V F S + G
Sbjct: 38 FFSAVGKVRDVRIISDRNSRRSKGIA--------------YVEFCEIQSVP-LAIGLTGQ 82
Query: 61 QIGMKRLKVQLKRPK 75
++ + VQ + +
Sbjct: 83 RLLGVPIIVQASQAE 97
>d2cpia1 d.58.7.1 (A:101-189) E3 ubiquitin protein ligase CNOT4
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 89
Score = 32.9 bits (74), Expect = 9e-04
Identities = 11/66 (16%), Positives = 21/66 (31%), Gaps = 11/66 (16%)
Query: 4 PFGNVISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQIG 63
FG + + + S+ +V++ A AIQ +N +
Sbjct: 34 KFGKIHKVVINNSTSYAGSQGPS-----------ASAYVTYIRSEDALRAIQCVNNVVVD 82
Query: 64 MKRLKV 69
+ LK
Sbjct: 83 GRTLKA 88
>d2cq1a1 d.58.7.1 (A:51-138) Polypyrimidine tract-binding protein
2, PTBP2 {Human (Homo sapiens) [TaxId: 9606]}
Length = 88
Score = 32.5 bits (73), Expect = 0.001
Identities = 9/69 (13%), Positives = 21/69 (30%), Gaps = 2/69 (2%)
Query: 9 ISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAM--NGFQIGMKR 66
+ +V FG+ + + K F+ +A T + + +
Sbjct: 16 LPGEVTETEVIALGLPFGKVTNILMLKGKNQAFLELATEEAAITMVNYYSAVTPHLRNQP 75
Query: 67 LKVQLKRPK 75
+ +Q K
Sbjct: 76 IYIQYSNHK 84
>d1uawa_ d.58.7.1 (A:) Musashi-1 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 77
Score = 31.9 bits (72), Expect = 0.001
Identities = 9/49 (18%), Positives = 21/49 (42%), Gaps = 1/49 (2%)
Query: 23 KCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQIGMKRLKVQL 71
K ++ + FGFV+F + A + A + ++ K + ++
Sbjct: 28 KECLVMRDPLTKRSRGFGFVTFMDQAGVDKVL-AQSRHELDSKTIDPKV 75
>d1x0fa1 d.58.7.1 (A:183-257) Nuclear ribonucleoprotein D0 (AUF1)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 75
Score = 31.9 bits (72), Expect = 0.002
Identities = 4/48 (8%), Positives = 18/48 (37%), Gaps = 1/48 (2%)
Query: 24 CFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQIGMKRLKVQL 71
+ ++ F F++F ++ +G+ + ++++
Sbjct: 28 SIELPMDNKTNKRRGFCFITFKEEEPVKKIME-KKYHNVGLSKCEIKV 74
>d1hd0a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein d0
{Human (Homo sapiens) [TaxId: 9606]}
Length = 75
Score = 31.5 bits (71), Expect = 0.002
Identities = 7/43 (16%), Positives = 15/43 (34%), Gaps = 1/43 (2%)
Query: 28 CNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQIGMKRLKVQ 70
++ + FGFV F S + ++ K + +
Sbjct: 32 KLDPITGRSRGFGFVLFKESESVDKVM-DQKEHKLNGKVIDPK 73
>d1l3ka2 d.58.7.1 (A:103-181) Nuclear ribonucleoprotein A1 (RNP
A1, UP1) {Human (Homo sapiens) [TaxId: 9606]}
Length = 79
Score = 31.2 bits (70), Expect = 0.002
Identities = 8/47 (17%), Positives = 17/47 (36%), Gaps = 1/47 (2%)
Query: 24 CFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQIGMKRLKVQ 70
+ S ++ F FV+FD+ + I + +V+
Sbjct: 31 VIEIMTDRGSGKKRGFAFVTFDDHD-SVDKIVIQKYHTVNGHNCEVR 76
>d2msta_ d.58.7.1 (A:) Neural RNA-binding protein Musashi-1 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 75
Score = 31.2 bits (70), Expect = 0.003
Identities = 8/49 (16%), Positives = 20/49 (40%), Gaps = 1/49 (2%)
Query: 23 KCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQIGMKRLKVQL 71
K + + FGFV+F++ + ++ +I K ++ +
Sbjct: 27 DDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKK 74
>d1fjeb1 d.58.7.1 (B:1-91) Nucleolin {Golden hamster (Mesocricetus
auratus) [TaxId: 10036]}
Length = 91
Score = 31.5 bits (70), Expect = 0.003
Identities = 7/48 (14%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
Query: 28 CNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQIGMKRLKVQLKRPK 75
+ + FG+V F++ A++ + G ++ +K++ + +
Sbjct: 45 VVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKPKGR 91
>d1whxa_ d.58.7.1 (A:) Probable RNA-binding protein 19, Rbm19
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 111
Score = 31.5 bits (70), Expect = 0.003
Identities = 9/72 (12%), Positives = 17/72 (23%)
Query: 9 ISSKVFIDRATNQSKCFGECNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQIGMKRLK 68
+ + FG R + V F P A A + + + L
Sbjct: 18 LPAGTLAAEIQETFSRFGSLGRVLLPEGGITAIVEFLEPLEARKAFRHLAYSKFHHVPLY 77
Query: 69 VQLKRPKDAARP 80
++
Sbjct: 78 LEWAPIGVFGAA 89
>d1x4da1 d.58.7.1 (A:8-96) Matrin 3 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 89
Score = 30.4 bits (68), Expect = 0.006
Identities = 10/54 (18%), Positives = 21/54 (38%), Gaps = 3/54 (5%)
Query: 25 FGECNRKVSVNQKCFGFVSFDNPASAHTAIQA--MNGFQIGMKRLKVQL-KRPK 75
FG + + +N+ F+ A A+ + K ++V L ++ K
Sbjct: 33 FGVISNHLILNKINEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRVHLSQKYK 86
>d1wi8a_ d.58.7.1 (A:) Eukaryotic translation initiation factor 4B
{Human (Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 30.5 bits (68), Expect = 0.009
Identities = 10/53 (18%), Positives = 20/53 (37%), Gaps = 1/53 (1%)
Query: 28 CNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQIGMKRLKVQLKRPKDAARP 80
K FG+ F++ S + ++N +G KR++V +
Sbjct: 48 REPSNPERLKGFGYAEFEDLDSLL-SALSLNEESLGNKRIRVDVADQAQDKDS 99
>d2adca2 d.58.7.1 (A:444-531) Polypyrimidine tract-binding protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 88
Score = 29.7 bits (66), Expect = 0.013
Identities = 6/49 (12%), Positives = 15/49 (30%), Gaps = 1/49 (2%)
Query: 28 CNRKVSVNQKCFGFVSFDNPASAHTAIQAMNGFQIGMKR-LKVQLKRPK 75
K + + + A A+ ++ +G L+V +
Sbjct: 39 KGFKFFQKDRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKST 87
>d3begb1 d.58.7.1 (B:121-207) Splicing factor,
arginine/serine-rich 1, SFRS1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 87
Score = 28.7 bits (63), Expect = 0.034
Identities = 6/45 (13%), Positives = 13/45 (28%)
Query: 35 NQKCFGFVSFDNPASAHTAIQAMNGFQIGMKRLKVQLKRPKDAAR 79
+ G V F A++ ++ + + R K
Sbjct: 33 YRDGTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVKVDGP 77
>d1zh5a2 d.58.7.1 (A:105-189) Lupus LA protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 85
Score = 28.2 bits (62), Expect = 0.043
Identities = 9/35 (25%), Positives = 13/35 (37%), Gaps = 1/35 (2%)
Query: 38 CFGFVSFDNPASAHTAIQAMNGFQIGMKRLKVQLK 72
FV FD+ SA + G + L + K
Sbjct: 48 GSIFVVFDSIESAKKFV-ETPGQKYKETDLLILFK 81
>d1wjqa_ b.34.9.3 (A:) Lethal(3)malignant brain tumor-like 3
protein, L3MBTL3 (KIAA1798) {Human (Homo sapiens)
[TaxId: 9606]}
Length = 107
Score = 23.7 bits (51), Expect = 2.5
Identities = 6/18 (33%), Positives = 11/18 (61%)
Query: 48 ASAHTAIQAMNGFQIGMK 65
+S + ++ +GFQ MK
Sbjct: 2 SSGSSGVKPPHGFQKKMK 19
>d2ix0a2 b.40.4.5 (A:4-82) Exoribonuclease 2, RNB {Escherichia
coli [TaxId: 562]}
Length = 79
Score = 22.4 bits (48), Expect = 6.7
Identities = 10/46 (21%), Positives = 16/46 (34%), Gaps = 1/46 (2%)
Query: 31 KVSVNQKCFGFVSFDNPASAHTAIQAMNGFQIGMKRLKVQLKRPKD 76
V +K FGF+ D S M G + + + K+
Sbjct: 22 VVKATEKGFGFLEVDAQKSYFIPPPQMKKVMHGDR-IIAVIHSEKE 66
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.325 0.136 0.412
Gapped
Lambda K H
0.267 0.0463 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 275,379
Number of extensions: 9688
Number of successful extensions: 127
Number of sequences better than 10.0: 1
Number of HSP's gapped: 114
Number of HSP's successfully gapped: 80
Length of query: 81
Length of database: 2,407,596
Length adjustment: 47
Effective length of query: 34
Effective length of database: 1,762,286
Effective search space: 59917724
Effective search space used: 59917724
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 47 (22.5 bits)