BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy16914
(284 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P13934|LEA76_BRANA Late embryogenesis abundant protein 76 OS=Brassica napus PE=2 SV=2
Length = 280
Score = 43.5 bits (101), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 67/213 (31%), Positives = 113/213 (53%), Gaps = 43/213 (20%)
Query: 46 AKEKTSELAK------EETSELAKEKTRELAKEETRELAKEETSELAKEKTRELAKEETS 99
K+KTS+ A+ +ET++ AK+KT + A +T + +ET++ AK+KT + A +T+
Sbjct: 35 GKDKTSQTAQKAQQKAQETAQAAKDKTSQAA--QTTQQKAQETAQAAKDKTSQAA--QTT 90
Query: 100 ELAKEETSELAKEKTRELAKEETRELAKEETSELAKEETRELAKEKTRELAKEKTRELAK 159
+ +ET++ AK+KT + A +T++ ET + +KEKT + A + A+
Sbjct: 91 QQKAQETAQAAKDKTSQAA----------QTTQQKAHETTQSSKEKTSQAA-----QTAQ 135
Query: 160 EKTRELAKEKTRELAKEETSELAKEETRELAKE--ETSELAKE---ETSELAKEETRELA 214
EK RE K+KT ET E K++ ++ A+ ET++ A + ET+E K++T
Sbjct: 136 EKARET-KDKTGSYL-SETGEAVKQKAQDAAQYTKETAQNAAQYTKETAEAGKDKTGGFL 193
Query: 215 KEETSELAKE----------KTRELAKEEETRE 237
+T E K+ T +A EEE RE
Sbjct: 194 -SQTGEHVKQMAMGAADAVKHTFGMATEEEDRE 225
Score = 39.3 bits (90), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 55/173 (31%), Positives = 96/173 (55%), Gaps = 35/173 (20%)
Query: 94 AKEETSELAK------EETSELAKEKTRELAK------EETRELAKEETSELAK------ 135
K++TS+ A+ +ET++ AK+KT + A+ +ET + AK++TS+ A+
Sbjct: 35 GKDKTSQTAQKAQQKAQETAQAAKDKTSQAAQTTQQKAQETAQAAKDKTSQAAQTTQQKA 94
Query: 136 EETRELAKEKTRELAKEKTRELAKEKTRELAKEKTRELAKEETSELAKEETRELAKEETS 195
+ET + AK+KT + A + T++ A E T+ +KEKT + A + A+E+ RE + S
Sbjct: 95 QETAQAAKDKTSQAA-QTTQQKAHETTQS-SKEKTSQAA-----QTAQEKARETKDKTGS 147
Query: 196 ELAKEETSELAKEETRELAKE--ETSELAKEKTRELAKEEETRELAKEKTREL 246
L+ ET E K++ ++ A+ ET++ A + T+E A E K+KT
Sbjct: 148 YLS--ETGEAVKQKAQDAAQYTKETAQNAAQYTKETA------EAGKDKTGGF 192
Score = 35.4 bits (80), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 51/161 (31%), Positives = 90/161 (55%), Gaps = 35/161 (21%)
Query: 142 AKEKTRELAKEKTRELAKEKTRELAKEKTRELAK------EETSELAKEETRELAK---- 191
K+KT + A +K ++ A+E T + AK+KT + A+ +ET++ AK++T + A+
Sbjct: 35 GKDKTSQTA-QKAQQKAQE-TAQAAKDKTSQAAQTTQQKAQETAQAAKDKTSQAAQTTQQ 92
Query: 192 --EETSELAKEETSELAK------EETRELAKEETSEL---AKEKTREL-----AKEEET 235
+ET++ AK++TS+ A+ ET + +KE+TS+ A+EK RE + ET
Sbjct: 93 KAQETAQAAKDKTSQAAQTTQQKAHETTQSSKEKTSQAAQTAQEKARETKDKTGSYLSET 152
Query: 236 RELAKEKTRELAKEKTRELAKE------ETSELAKEETKKL 270
E K+K ++ A + T+E A+ ET+E K++T
Sbjct: 153 GEAVKQKAQDAA-QYTKETAQNAAQYTKETAEAGKDKTGGF 192
Score = 34.7 bits (78), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 40/120 (33%), Positives = 68/120 (56%), Gaps = 26/120 (21%)
Query: 24 EETSELAKEETSELAK------EETSELAKEKTSELAK------EETSELAKEKTRELAK 71
+ET++ AK++TS+ A+ +ET++ AK+KTS+ A+ ET++ +KEKT + A+
Sbjct: 73 QETAQAAKDKTSQAAQTTQQKAQETAQAAKDKTSQAAQTTQQKAHETTQSSKEKTSQAAQ 132
Query: 72 ---EETRELAK------EETSELAKEKTRELAKE--ETSELAKE---ETSELAKEKTREL 117
E+ RE ET E K+K ++ A+ ET++ A + ET+E K+KT
Sbjct: 133 TAQEKARETKDKTGSYLSETGEAVKQKAQDAAQYTKETAQNAAQYTKETAEAGKDKTGGF 192
Score = 33.1 bits (74), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 34/97 (35%), Positives = 59/97 (60%), Gaps = 18/97 (18%)
Query: 192 EETSELAKEETSELAKEETRELAKEETSELAKEKTRELA-----KEEETRELAKEKTREL 246
+ET++ AK++TS+ A +T + +ET++ AK+KT + A K +ET + AK+KT +
Sbjct: 51 QETAQAAKDKTSQAA--QTTQQKAQETAQAAKDKTSQAAQTTQQKAQETAQAAKDKTSQA 108
Query: 247 AK------EKTRELAKEETSELAKEETKKLAKEKTRE 277
A+ +T + +KE+TS+ A + A+EK RE
Sbjct: 109 AQTTQQKAHETTQSSKEKTSQAA-----QTAQEKARE 140
>sp|Q5UQ88|UBC3_MIMIV Probable ubiquitin-conjugating enzyme E2 R521 OS=Acanthamoeba
polyphaga mimivirus GN=MIMI_R521 PE=3 SV=1
Length = 1441
Score = 38.9 bits (89), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 51/172 (29%), Positives = 93/172 (54%), Gaps = 10/172 (5%)
Query: 78 AKEETSEL-AKEKTRELAKEETSELAKEETSEL-AKEKTRELAKEETRELAKEETSELAK 135
ETS++ E +E A EE + EE +L A E +E K+ +E+A+E E
Sbjct: 400 VPNETSQITVVEPVQE-ATEEPVQNVTEELIQLVADEPVQETVKDSVQEVAEESVQETTV 458
Query: 136 EETRELAKEKTRELAKEKTRELAKEKTRELAKEKTRELAKEETSELAKEETRELAKEETS 195
E +E+A+E +++ +E +E E +E+A+E +++ +E E E +E+A+E
Sbjct: 459 EAVQEIAEESVQQVVEESVQETTVEPVQEVAEEAVQQVVEESVQETTVEPVQEVAEEPVQ 518
Query: 196 -ELAKEETS-ELAKEETR-ELAKEETSELAKEKTR----ELAKEEETRELAK 240
E+A+E E+A+E + E+A+E E+A+E + EL ++E ++ K
Sbjct: 519 QEVAEEPVQQEVAEEPVQQEVAEEPVQEVAEEPVQKATEELVQQEVAEDIVK 570
Score = 31.6 bits (70), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 49/172 (28%), Positives = 93/172 (54%), Gaps = 10/172 (5%)
Query: 54 AKEETSEL-AKEKTRELAKEETRELAKEETSELAKEKTRELAKEETSELAKEETSELAKE 112
ETS++ E +E +E + + +E +A E +E K+ E+A+E E E
Sbjct: 400 VPNETSQITVVEPVQEATEEPVQNVTEELIQLVADEPVQETVKDSVQEVAEESVQETTVE 459
Query: 113 KTRELAKEETRELAKEETS-ELAKEETRELAKEKTRELAKEKTRELAKEKTRELAKEKT- 170
+E+A+E ++ EE+ E E +E+A+E +++ +E +E E +E+A+E
Sbjct: 460 AVQEIAEESVQQ-VVEESVQETTVEPVQEVAEEAVQQVVEESVQETTVEPVQEVAEEPVQ 518
Query: 171 RELAKEET-SELAKEET-RELAKEETSELAKEETSELAKEETRELAKEETSE 220
+E+A+E E+A+E +E+A+E E+A+E ++ T EL ++E +E
Sbjct: 519 QEVAEEPVQQEVAEEPVQQEVAEEPVQEVAEEP----VQKATEELVQQEVAE 566
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.286 0.108 0.242
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 82,837,112
Number of Sequences: 539616
Number of extensions: 3617743
Number of successful extensions: 164164
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 2073
Number of HSP's successfully gapped in prelim test: 4259
Number of HSP's that attempted gapping in prelim test: 38634
Number of HSP's gapped (non-prelim): 42029
length of query: 284
length of database: 191,569,459
effective HSP length: 116
effective length of query: 168
effective length of database: 128,974,003
effective search space: 21667632504
effective search space used: 21667632504
T: 11
A: 40
X1: 17 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 45 (21.8 bits)
S2: 60 (27.7 bits)