Query psy16914
Match_columns 284
No_of_seqs 34 out of 36
Neff 2.4
Searched_HMMs 46136
Date Fri Aug 16 16:54:05 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16914.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/16914hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG3064 TolA Membrane protein 94.8 4.8 0.0001 39.9 21.6 7 164-170 192-198 (387)
2 PF08017 Fibrinogen_BP: Fibrin 36.2 67 0.0014 31.8 5.1 60 165-224 233-292 (393)
3 PTZ00121 MAEBL; Provisional 35.0 9E+02 0.02 29.4 32.4 258 13-276 1147-1432(2084)
4 PF08017 Fibrinogen_BP: Fibrin 32.4 81 0.0018 31.2 5.0 22 174-195 258-279 (393)
5 KOG1029|consensus 15.2 1.7E+03 0.037 25.4 13.4 20 105-124 388-407 (1118)
6 PTZ00121 MAEBL; Provisional 12.7 2.5E+03 0.054 26.0 33.1 256 17-273 1135-1402(2084)
7 PF10908 DUF2778: Protein of u 10.3 1.2E+02 0.0025 25.8 0.6 11 3-13 80-90 (120)
8 COG1717 RPL32 Ribosomal protei 6.8 2E+02 0.0044 25.3 0.6 12 1-12 71-82 (133)
9 KOG1029|consensus 5.4 4E+03 0.086 22.7 13.9 93 45-137 326-420 (1118)
10 cd08059 MPN_prok_mb Mpr1p, Pad 5.3 3.1E+02 0.0068 20.8 0.9 11 5-15 65-75 (101)
No 1
>COG3064 TolA Membrane protein involved in colicin uptake [Cell envelope biogenesis, outer membrane]
Probab=94.77 E-value=4.8 Score=39.88 Aligned_cols=7 Identities=14% Similarity=0.121 Sum_probs=2.6
Q ss_pred HHHHHHH
Q psy16914 164 ELAKEKT 170 (284)
Q Consensus 164 ~~akeea 170 (284)
++.+.++
T Consensus 192 ~k~kaEa 198 (387)
T COG3064 192 AKKKAEA 198 (387)
T ss_pred HHHHHHH
Confidence 3333333
No 2
>PF08017 Fibrinogen_BP: Fibrinogen binding protein ; InterPro: IPR012969 This entry represents proteins that bind to fibrinogen. Fibrinogen is capable of binding to a wide number of endogenous proteins and cell receptors during haemostasis, including binding to platelets to promote their aggregation []. This entry represents the fibrinogen receptor FbsA (Q8GIU3 from SWISSPROT) from the pathogen Streptococcus agalactiae, which is responsible for causing endocarditis in humans. FbsA is considered an important virulence factor that is capable of binding fibrinogen, through which it elicits platelet aggregation and adherence to the extracellular matrix. This enables the bacteria to invade the pulmonary epithelium, which may be a prerequisite for infection []. More information about Fibrinogen can be found at Protein of the Month: Fibrinogen []. This entry also contains Eukaryotic translation initiation factor 4 gamma, which is a component of the protein complex eIF4F and is involved in the recognition of the mRNA cap, ATP-dependent unwinding of 5'-terminal secondary structure and recruitment of mRNA to the ribosome [].
Probab=36.20 E-value=67 Score=31.75 Aligned_cols=60 Identities=8% Similarity=0.142 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHhHHHhhHHHHHHHHHHHHHHhHHHHHHHHHH
Q psy16914 165 LAKEKTRELAKEETSELAKEETRELAKEETSELAKEETSELAKEETRELAKEETSELAKE 224 (284)
Q Consensus 165 ~akeea~~~aK~~ae~kaKeea~~~aK~eae~kAKeEa~~~aKeeae~kaKeEa~~~aK~ 224 (284)
+..-.+......++..+...+........+..+...++.....-.+.-+..-++..+.++
T Consensus 233 ksq~e~~ersq~~~~~ksq~ev~~k~qr~~~~ksq~n~~er~q~~ae~ksq~~~~e~~q~ 292 (393)
T PF08017_consen 233 KSQGEAEERSQRDAESKSQGEVLAKRQRDAESKSQGNALERRQRNAENKSQREALERRQK 292 (393)
T ss_pred hhhccHHHHHhhchhchhhhhHHHHHHHhhhhhhccChHhHhHhhHHhhhcccHHHHHHH
Confidence 333333333333333333333333333333333333333333333333333333333333
No 3
>PTZ00121 MAEBL; Provisional
Probab=35.03 E-value=9e+02 Score=29.36 Aligned_cols=258 Identities=25% Similarity=0.279 Sum_probs=0.0
Q ss_pred CcchhcchhhhHHhhHHhhHHhhHHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16914 13 QPEERGDKSAKEETSELAKEETSELAKEETSELAKEKTSELAKEETSELAKEKTRELAKEETRELAKEETSELAKEKTRE 92 (284)
Q Consensus 13 ~~~e~~dk~AKeEa~~kAkeEa~~kAkeE~~~kAkeea~~kAKeEae~kAKeeae~kAKeEae~kAK~eae~kAKeEae~ 92 (284)
..++..+-.+.-....-...+..+++.++......-..++.-..++-+++..........-.+.....+..+++..+...
T Consensus 1147 KrEeaRraE~aRreEEaRr~EEaRraEeArr~EEaRraEE~Rr~EElRraEEaRkaEEaRRlEE~RraEEARraEEErR~ 1226 (2084)
T PTZ00121 1147 KAEDAKRVEIARKAEDARKAEEARKAEDAKKAEAARKAEEVRKAEELRKAEDARKAEAARKAEEERKAEEARKAEDAKKA 1226 (2084)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16914 93 LAKEETSELAK-----------EETSELAKEKTRELAKEETRELA-KEETSELAKEETRELAKEKTRELAKEKTRELAKE 160 (284)
Q Consensus 93 kAKeEae~kAK-----------eEae~kAk~eae~kAkeEA~~kA-keEAe~kAkeEa~~kAk~eAe~kAkeea~~kAke 160 (284)
..-..++...+ +-++...+.+..+.|..-.+.-+ +.+..+.|..-...-.+..++...+.+...++.+
T Consensus 1227 EE~RraEEaRK~aEEAkraEEeR~~EE~Rk~Eear~a~~A~r~aa~k~Ee~RrAee~~k~Ee~r~a~~~kk~ee~kkaee 1306 (2084)
T PTZ00121 1227 EAVKKAEEAKKDAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEAKKAEEKKKADE 1306 (2084)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q ss_pred HH-HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH---hHHHhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhHHHHH
Q psy16914 161 KT-RELAKEKTRELAKEETSELAKEETRELAKEE---TSELAKEETSELAKEETRELAKEETSELAKEKTRELAKEEETR 236 (284)
Q Consensus 161 ea-~~~akeea~~~aK~~ae~kaKeea~~~aK~e---ae~kAKeEa~~~aKeeae~kaKeEa~~~aK~~aee~aK~e~~r 236 (284)
.. .......|+..-+..-..+-|.+.-.+--+. +..-+|.++...+...---.-|.++..+-+.++...+-.
T Consensus 1307 ~~kk~eea~kAee~~kkae~~~kka~~~~k~~e~~kk~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kk~~~---- 1382 (2084)
T PTZ00121 1307 AKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADA---- 1382 (2084)
T ss_pred HHHhHHHHHHHHHHHHhHHHHHhhhHHHHhhHHHHHhHHHhhhhhhhhhhhhhhhhhhhhhhhhhhhhHHHHhHHH----
Q ss_pred HHHHHHHHHHHHHHHHHHhhHH------------hhHHhHHHHHHHHHHHhH
Q psy16914 237 ELAKEKTRELAKEKTRELAKEE------------TSELAKEETKKLAKEKTR 276 (284)
Q Consensus 237 ~laKeet~~~aKee~er~~keE------------~er~akeE~~k~ake~~~ 276 (284)
+|-..++..|-++-..+-++ ..++.-+++++.+.+...
T Consensus 1383 --~kk~~ee~kk~~~~kk~~e~~~kka~~~kk~~~~kkka~~~kk~~e~~kk 1432 (2084)
T PTZ00121 1383 --AKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKK 1432 (2084)
T ss_pred --HHHHHHHHhhHHHHHHHHHhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHh
No 4
>PF08017 Fibrinogen_BP: Fibrinogen binding protein ; InterPro: IPR012969 This entry represents proteins that bind to fibrinogen. Fibrinogen is capable of binding to a wide number of endogenous proteins and cell receptors during haemostasis, including binding to platelets to promote their aggregation []. This entry represents the fibrinogen receptor FbsA (Q8GIU3 from SWISSPROT) from the pathogen Streptococcus agalactiae, which is responsible for causing endocarditis in humans. FbsA is considered an important virulence factor that is capable of binding fibrinogen, through which it elicits platelet aggregation and adherence to the extracellular matrix. This enables the bacteria to invade the pulmonary epithelium, which may be a prerequisite for infection []. More information about Fibrinogen can be found at Protein of the Month: Fibrinogen []. This entry also contains Eukaryotic translation initiation factor 4 gamma, which is a component of the protein complex eIF4F and is involved in the recognition of the mRNA cap, ATP-dependent unwinding of 5'-terminal secondary structure and recruitment of mRNA to the ribosome [].
Probab=32.37 E-value=81 Score=31.17 Aligned_cols=22 Identities=5% Similarity=0.129 Sum_probs=7.9
Q ss_pred HHHHhHHHHHHHHHHHHHHHhH
Q psy16914 174 AKEETSELAKEETRELAKEETS 195 (284)
Q Consensus 174 aK~~ae~kaKeea~~~aK~eae 195 (284)
...++..+...++..+....++
T Consensus 258 ~qr~~~~ksq~n~~er~q~~ae 279 (393)
T PF08017_consen 258 RQRDAESKSQGNALERRQRNAE 279 (393)
T ss_pred HHHhhhhhhccChHhHhHhhHH
Confidence 3333333333333333333333
No 5
>KOG1029|consensus
Probab=15.16 E-value=1.7e+03 Score=25.44 Aligned_cols=20 Identities=30% Similarity=0.348 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy16914 105 ETSELAKEKTRELAKEETRE 124 (284)
Q Consensus 105 Eae~kAk~eae~kAkeEA~~ 124 (284)
+.+++-..+..+-|++|-+.
T Consensus 388 EEerkkeie~rEaar~ElEk 407 (1118)
T KOG1029|consen 388 EEERKKEIERREAAREELEK 407 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333
No 6
>PTZ00121 MAEBL; Provisional
Probab=12.68 E-value=2.5e+03 Score=26.03 Aligned_cols=256 Identities=24% Similarity=0.266 Sum_probs=0.0
Q ss_pred hcchhhhHHhhHHhhHHhhHHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16914 17 RGDKSAKEETSELAKEETSELAKEETSELAKEKTSELAKEETSELAKEKTRELAKEETRELAKEETSELAKEKTRELAKE 96 (284)
Q Consensus 17 ~~dk~AKeEa~~kAkeEa~~kAkeE~~~kAkeea~~kAKeEae~kAKeeae~kAKeEae~kAK~eae~kAKeEae~kAKe 96 (284)
.++-.-..+.-++........+....+.-...+..+++..+.........+..-..++-+++............+..+..
T Consensus 1135 rae~~Rr~EeaRKrEeaRraE~aRreEEaRr~EEaRraEeArr~EEaRraEE~Rr~EElRraEEaRkaEEaRRlEE~Rra 1214 (2084)
T PTZ00121 1135 KAEDARKAEEARKAEDAKRVEIARKAEDARKAEEARKAEDAKKAEAARKAEEVRKAEELRKAEDARKAEAARKAEEERKA 1214 (2084)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Q psy16914 97 ETSELAKEETSELAKEKTRELAK-----------EETRELAKEETSELAKEETRELA-KEKTRELAKEKTRELAKEKTRE 164 (284)
Q Consensus 97 Eae~kAKeEae~kAk~eae~kAk-----------eEA~~kAkeEAe~kAkeEa~~kA-k~eAe~kAkeea~~kAkeea~~ 164 (284)
+..+++..+.....-..++...+ +-+++..+.+.-+.|..-.+.-+ +.+-.++|.+-...-..-.+..
T Consensus 1215 EEARraEEErR~EE~RraEEaRK~aEEAkraEEeR~~EE~Rk~Eear~a~~A~r~aa~k~Ee~RrAee~~k~Ee~r~a~~ 1294 (2084)
T PTZ00121 1215 EEARKAEDAKKAEAVKKAEEAKKDAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADE 1294 (2084)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHhHHHhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q psy16914 165 LAKEKTRELAKEETSELAKEETRELAKEETSELAKEETSELAKEETRELAKEETSELAKEKTRELAKEEETRELAKEKTR 244 (284)
Q Consensus 165 ~akeea~~~aK~~ae~kaKeea~~~aK~eae~kAKeEa~~~aKeeae~kaKeEa~~~aK~~aee~aK~e~~r~laKeet~ 244 (284)
..+.+....+-+...+.--..--.-++-.++.-.|---...-+-+.--++-+-+-..+.-.+...-.-+.-.+ +-+..-
T Consensus 1295 ~kk~ee~kkaee~~kk~eea~kAee~~kkae~~~kka~~~~k~~e~~kk~~e~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 1373 (2084)
T PTZ00121 1295 AKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAE-AAEKKK 1373 (2084)
T ss_pred HhhHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHhhhHHHHhhHHHHHhHHHhhhhhhhhhhhhhhhhhhhhh-hhhhhh
Q ss_pred HHHHHHHHHHhhHHhhHHhHHHHHHHHHH
Q psy16914 245 ELAKEKTRELAKEETSELAKEETKKLAKE 273 (284)
Q Consensus 245 ~~aKee~er~~keE~er~akeE~~k~ake 273 (284)
.-.+-.++...+-+.+++.-+++++.+.+
T Consensus 1374 ~~~~kk~~~~kk~~ee~kk~~~~kk~~e~ 1402 (2084)
T PTZ00121 1374 EEAKKKADAAKKKAEEKKKADEAKKKAEE 1402 (2084)
T ss_pred hHHHHhHHHHHHHHHHHhhHHHHHHHHHh
No 7
>PF10908 DUF2778: Protein of unknown function (DUF2778); InterPro: IPR021225 This is a bacterial family of uncharacterised proteins.
Probab=10.35 E-value=1.2e+02 Score=25.81 Aligned_cols=11 Identities=55% Similarity=1.138 Sum_probs=0.0
Q ss_pred CCCCCCCCcCC
Q psy16914 3 RLHPSGPETLQ 13 (284)
Q Consensus 3 ~~~~~~~~~l~ 13 (284)
||||.||..+.
T Consensus 80 RLHP~g~~G~S 90 (120)
T PF10908_consen 80 RLHPVGPSGIS 90 (120)
T ss_pred EEcCCCCCCcc
No 8
>COG1717 RPL32 Ribosomal protein L32E [Translation, ribosomal structure and biogenesis]
Probab=6.77 E-value=2e+02 Score=25.29 Aligned_cols=12 Identities=50% Similarity=0.886 Sum_probs=0.0
Q ss_pred CCCCCCCCCCcC
Q psy16914 1 MKRLHPSGPETL 12 (284)
Q Consensus 1 ~~~~~~~~~~~l 12 (284)
+.-|||||-+.+
T Consensus 71 vRglhPSG~~~V 82 (133)
T COG1717 71 VRGLHPSGYEEV 82 (133)
T ss_pred hcccCCCcccee
No 9
>KOG1029|consensus
Probab=5.35 E-value=4e+03 Score=22.74 Aligned_cols=93 Identities=19% Similarity=0.197 Sum_probs=0.0
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16914 45 LAKEKTSELAKEETSELAKEKTRELAKEETRELAKE--ETSELAKEKTRELAKEETSELAKEETSELAKEKTRELAKEET 122 (284)
Q Consensus 45 kAkeea~~kAKeEae~kAKeeae~kAKeEae~kAK~--eae~kAKeEae~kAKeEae~kAKeEae~kAk~eae~kAkeEA 122 (284)
.+.=+.++++=.+...+-.++..++-.++.+++-++ +.++++..+-+++-..+-+--.+++.+++-..+..+-|++|-
T Consensus 326 qaELerRRq~leeqqqreree~eqkEreE~ekkererqEqErk~qlElekqLerQReiE~qrEEerkkeie~rEaar~El 405 (1118)
T KOG1029|consen 326 QAELERRRQALEEQQQREREEVEQKEREEEEKKERERQEQERKAQLELEKQLERQREIERQREEERKKEIERREAAREEL 405 (1118)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHH
Q psy16914 123 RELAKEETSELAKEE 137 (284)
Q Consensus 123 ~~kAkeEAe~kAkeE 137 (284)
+...+.+=++--..+
T Consensus 406 EkqRqlewErar~qe 420 (1118)
T KOG1029|consen 406 EKQRQLEWERARRQE 420 (1118)
T ss_pred HHHHHHHHHHHHHHH
No 10
>cd08059 MPN_prok_mb Mpr1p, Pad1p N-terminal (MPN) domains with catalytic isopeptidase activity (metal-binding); prokaryotic. This family contains bacterial and archaeal MPN (also known as Mov34, PAD-1, JAMM, JAB, MPN+)-like domains. These catalytically active domains contain the signature JAB1/MPN/Mov34 metalloenzyme (JAMM) motif, EXnHS/THX7SXXD, which is involved in zinc ion coordination and provides the active site for isopeptidase activity for the release of ubiquitin from ubiquitinated proteins (thus having deubiquitinating (DUB) activity) that are tagged for degradation. The JAMM proteins likely hydrolyze ubiquitin conjugates in a manner similar to thermolysin, in which the zinc-polarized aqua ligand serves as the nucleophile, compared with the classical DUBs that do so with a cysteine residue in the active site.
Probab=5.32 E-value=3.1e+02 Score=20.77 Aligned_cols=11 Identities=36% Similarity=0.516 Sum_probs=0.0
Q ss_pred CCCCCCcCCcc
Q psy16914 5 HPSGPETLQPE 15 (284)
Q Consensus 5 ~~~~~~~l~~~ 15 (284)
|||||-.....
T Consensus 65 HP~g~~~PS~~ 75 (101)
T cd08059 65 HPSGSCRPSEA 75 (101)
T ss_pred CcCCCCCCCHH
Done!