Query psy16914
Match_columns 284
No_of_seqs 34 out of 36
Neff 2.4
Searched_HMMs 29240
Date Fri Aug 16 16:54:38 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16914.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/16914hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2zvk_U DNA polymerase ETA, pro 11.5 72 0.0025 20.3 0.7 13 1-13 1-13 (26)
2 3vu7_H DNA repair protein REV1 3.9 2E+02 0.007 23.1 0.0 14 4-17 9-22 (124)
3 2qlc_A DNA repair protein RADC 3.5 3.2E+02 0.011 21.6 0.8 10 4-13 76-85 (126)
4 3j21_b PFEL32, 50S ribosomal p 3.3 3.8E+02 0.013 22.1 1.0 9 2-10 72-80 (130)
5 1cxy_A Cytochrome B5; helix, b 3.0 4.2E+02 0.014 19.4 1.0 10 4-13 41-50 (90)
6 1h6f_A T-box transcription fac 2.9 3E+02 0.01 23.4 0.1 8 4-11 88-95 (193)
7 1xbr_A Protein (T protein); co 2.9 3.1E+02 0.01 23.2 0.1 8 4-11 85-92 (184)
8 3iz5_h 60S ribosomal protein L 2.9 4.3E+02 0.015 21.9 0.9 10 2-11 65-74 (133)
9 4a17_X RPL32, 60S ribosomal pr 2.9 4.3E+02 0.015 21.9 0.9 10 2-11 66-75 (134)
10 3u5e_e 60S ribosomal protein L 2.8 4.3E+02 0.015 21.8 0.9 8 1-8 63-70 (130)
No 1
>2zvk_U DNA polymerase ETA, proliferating cell nuclear antigen; DNA replication, PCNA, clamp, translesion synthesis, TLS, DN polymerase, TLS polymerase; HET: DNA; 2.70A {Homo sapiens}
Probab=11.54 E-value=72 Score=20.32 Aligned_cols=13 Identities=46% Similarity=0.697 Sum_probs=10.6
Q ss_pred CCCCCCCCCCcCC
Q psy16914 1 MKRLHPSGPETLQ 13 (284)
Q Consensus 1 ~~~~~~~~~~~l~ 13 (284)
.||..|+|+-||.
T Consensus 1 ~KR~R~~g~~TLe 13 (26)
T 2zvk_U 1 CKRPRPEGMQTLE 13 (26)
T ss_pred CCCCCccccccHH
Confidence 3789999999874
No 2
>3vu7_H DNA repair protein REV1; DNA replication, translesion DNA synthesis, damage tolerance, DNA repair, replication; HET: DNA; 2.80A {Homo sapiens} PDB: 2lsj_A*
Probab=3.90 E-value=2e+02 Score=23.07 Aligned_cols=14 Identities=36% Similarity=0.463 Sum_probs=0.0
Q ss_pred CCCCCCCcCCcchh
Q psy16914 4 LHPSGPETLQPEER 17 (284)
Q Consensus 4 ~~~~~~~~l~~~e~ 17 (284)
.|.|||.+++|+.-
T Consensus 9 ~~~~~~~~~~~~~~ 22 (124)
T 3vu7_H 9 HHGSGLSSLQSDPA 22 (124)
T ss_dssp --------------
T ss_pred ccCCCccccCcccC
Confidence 46788888887653
No 3
>2qlc_A DNA repair protein RADC homolog; MCSG, structural genomics, PSI-2, structure initiative; HET: DNA; 2.30A {Chlorobium tepidum tls}
Probab=3.54 E-value=3.2e+02 Score=21.64 Aligned_cols=10 Identities=40% Similarity=0.491 Sum_probs=7.0
Q ss_pred CCCCCCCcCC
Q psy16914 4 LHPSGPETLQ 13 (284)
Q Consensus 4 ~~~~~~~~l~ 13 (284)
-||||..+-.
T Consensus 76 NHPSG~~~PS 85 (126)
T 2qlc_A 76 NHPSGDVQPS 85 (126)
T ss_dssp ECSSSCCSCC
T ss_pred cCCCCCCCCC
Confidence 4999976543
No 4
>3j21_b PFEL32, 50S ribosomal protein L32E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=3.25 E-value=3.8e+02 Score=22.14 Aligned_cols=9 Identities=67% Similarity=1.058 Sum_probs=6.5
Q ss_pred CCCCCCCCC
Q psy16914 2 KRLHPSGPE 10 (284)
Q Consensus 2 ~~~~~~~~~ 10 (284)
+-|||||-.
T Consensus 72 R~l~PsGf~ 80 (130)
T 3j21_b 72 RGLHPSGYE 80 (130)
T ss_dssp TTCCTTSCE
T ss_pred cccCCCCCc
Confidence 458999864
No 5
>1cxy_A Cytochrome B5; helix, beta-strand, electron transport; HET: HEM; 1.65A {Ectothiorhodospira shaposhnikovii} SCOP: d.120.1.1
Probab=2.98 E-value=4.2e+02 Score=19.37 Aligned_cols=10 Identities=20% Similarity=0.318 Sum_probs=7.7
Q ss_pred CCCCCCCcCC
Q psy16914 4 LHPSGPETLQ 13 (284)
Q Consensus 4 ~~~~~~~~l~ 13 (284)
.||+|+..|.
T Consensus 41 ~HPGG~~~i~ 50 (90)
T 1cxy_A 41 NHPGPAGMML 50 (90)
T ss_dssp GCCSSTTTTG
T ss_pred hCcChHHHHH
Confidence 5999987664
No 6
>1h6f_A T-box transcription factor TBX3; transcription factor, TBX3, T-box transcription factor; 1.7A {Homo sapiens} SCOP: b.2.5.4
Probab=2.93 E-value=3e+02 Score=23.37 Aligned_cols=8 Identities=50% Similarity=1.140 Sum_probs=6.2
Q ss_pred CCCCCCCc
Q psy16914 4 LHPSGPET 11 (284)
Q Consensus 4 ~~~~~~~~ 11 (284)
+||+||.|
T Consensus 88 ~Hpdsp~t 95 (193)
T 1h6f_A 88 IHPDSPAT 95 (193)
T ss_dssp ECTTCSEE
T ss_pred ecCCCccc
Confidence 58888865
No 7
>1xbr_A Protein (T protein); complex (transcription factor/DNA), transcription factor, DNA-binding protein, transcription/DNA complex; HET: DNA; 2.50A {Xenopus laevis} SCOP: b.2.5.4
Probab=2.89 E-value=3.1e+02 Score=23.19 Aligned_cols=8 Identities=38% Similarity=0.982 Sum_probs=6.0
Q ss_pred CCCCCCCc
Q psy16914 4 LHPSGPET 11 (284)
Q Consensus 4 ~~~~~~~~ 11 (284)
+||+||.|
T Consensus 85 ~Hpdsp~~ 92 (184)
T 1xbr_A 85 IHPDSPNF 92 (184)
T ss_dssp ECTTCSEE
T ss_pred ECCCCchh
Confidence 58888865
No 8
>3iz5_h 60S ribosomal protein L32 (L32E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_h 2zkr_9
Probab=2.87 E-value=4.3e+02 Score=21.90 Aligned_cols=10 Identities=10% Similarity=0.212 Sum_probs=6.5
Q ss_pred CCCCCCCCCc
Q psy16914 2 KRLHPSGPET 11 (284)
Q Consensus 2 ~~~~~~~~~~ 11 (284)
+-|||||-..
T Consensus 65 r~l~PsGf~~ 74 (133)
T 3iz5_h 65 RHYLPNKFKK 74 (133)
T ss_dssp TTBCTTSCEE
T ss_pred cccCCCCCeE
Confidence 4578888643
No 9
>4a17_X RPL32, 60S ribosomal protein L32; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_X 4a1c_X 4a1e_X
Probab=2.87 E-value=4.3e+02 Score=21.92 Aligned_cols=10 Identities=40% Similarity=0.617 Sum_probs=6.7
Q ss_pred CCCCCCCCCc
Q psy16914 2 KRLHPSGPET 11 (284)
Q Consensus 2 ~~~~~~~~~~ 11 (284)
+-|||||-..
T Consensus 66 R~l~PsGf~~ 75 (134)
T 4a17_X 66 KHLLPNGFKK 75 (134)
T ss_dssp TTBCTTSCEE
T ss_pred cccCCCCCeE
Confidence 4578888643
No 10
>3u5e_e 60S ribosomal protein L32, 60S ribosomal protein L31-A; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3izc_h 1s1i_0 3izs_h 3o5h_b 3o58_b 3u5i_e 4b6a_e 3jyw_0
Probab=2.84 E-value=4.3e+02 Score=21.79 Aligned_cols=8 Identities=63% Similarity=0.816 Sum_probs=0.0
Q ss_pred CCCCCCCC
Q psy16914 1 MKRLHPSG 8 (284)
Q Consensus 1 ~~~~~~~~ 8 (284)
.+-|||||
T Consensus 63 tr~l~PsG 70 (130)
T 3u5e_e 63 TKFLSPSG 70 (130)
T ss_dssp TTTBCTTS
T ss_pred hcccCCCC
Done!