Query psy16914
Match_columns 284
No_of_seqs 34 out of 36
Neff 2.4
Searched_HMMs 13730
Date Fri Aug 16 16:54:46 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16914.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/16914hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1cxya_ d.120.1.1 (A:) Cytochr 4.6 1.2E+02 0.0085 20.2 0.9 12 3-14 35-46 (81)
2 d1cyoa_ d.120.1.1 (A:) Cytochr 4.2 94 0.0068 21.2 0.2 11 3-13 37-47 (88)
3 d1h6fa_ b.2.5.4 (A:) T-box pro 4.0 98 0.0071 24.3 0.1 8 4-11 85-92 (184)
4 d1xbra_ b.2.5.4 (A:) T domain 3.8 1E+02 0.0074 24.4 0.1 8 4-11 85-92 (184)
5 d1vqoy1 c.9.2.1 (Y:95-236) Rib 3.0 2E+02 0.014 22.2 1.0 10 2-11 81-90 (142)
6 d1h54a2 b.30.5.3 (A:1-268) Lac 2.9 2E+02 0.014 22.0 1.0 13 1-13 1-13 (268)
7 d1euea_ d.120.1.1 (A:) Cytochr 2.8 1.2E+02 0.0091 20.4 -0.3 12 3-14 37-48 (86)
8 d1mj4a_ d.120.1.1 (A:) Sulfite 2.7 1E+02 0.0072 20.5 -1.0 11 3-13 36-46 (80)
9 d1pmia_ b.82.1.3 (A:) Phosphom 2.2 2.1E+02 0.015 24.4 0.2 9 4-12 52-60 (440)
10 d1soxa2 d.120.1.1 (A:3-93) Sul 2.1 1.7E+02 0.012 19.8 -0.5 12 1-12 34-45 (91)
No 1
>d1cxya_ d.120.1.1 (A:) Cytochrome b558 {Ectothiorhodospira vacuolata [TaxId: 1054]}
Probab=4.59 E-value=1.2e+02 Score=20.24 Aligned_cols=12 Identities=17% Similarity=0.191 Sum_probs=9.3
Q ss_pred CCCCCCCCcCCc
Q psy16914 3 RLHPSGPETLQP 14 (284)
Q Consensus 3 ~~~~~~~~~l~~ 14 (284)
..||.|+..|..
T Consensus 35 ~~HPGG~~~l~~ 46 (81)
T d1cxya_ 35 PNHPGPAGMMLV 46 (81)
T ss_dssp GGCCSSTTTTGG
T ss_pred ecCCCcHHHHHH
Confidence 459999988764
No 2
>d1cyoa_ d.120.1.1 (A:) Cytochrome b5 {Cow (Bos taurus) [TaxId: 9913]}
Probab=4.19 E-value=94 Score=21.19 Aligned_cols=11 Identities=45% Similarity=0.812 Sum_probs=8.2
Q ss_pred CCCCCCCCcCC
Q psy16914 3 RLHPSGPETLQ 13 (284)
Q Consensus 3 ~~~~~~~~~l~ 13 (284)
..||.|+..|.
T Consensus 37 ~~HPGG~~~i~ 47 (88)
T d1cyoa_ 37 EEHPGGEEVLR 47 (88)
T ss_dssp TTCTTCSHHHH
T ss_pred cccCCchHHHH
Confidence 56999987664
No 3
>d1h6fa_ b.2.5.4 (A:) T-box protein 3, tbx3 {Human (Homo sapiens) [TaxId: 9606]}
Probab=3.96 E-value=98 Score=24.33 Aligned_cols=8 Identities=50% Similarity=1.140 Sum_probs=6.4
Q ss_pred CCCCCCCc
Q psy16914 4 LHPSGPET 11 (284)
Q Consensus 4 ~~~~~~~~ 11 (284)
+||+||.|
T Consensus 85 ~Hpdsp~t 92 (184)
T d1h6fa_ 85 IHPDSPAT 92 (184)
T ss_dssp ECTTCSEE
T ss_pred ECCCCCcC
Confidence 68998875
No 4
>d1xbra_ b.2.5.4 (A:) T domain from Brachyury transcription factor {African clawed frog (Xenopus laevis) [TaxId: 8355]}
Probab=3.82 E-value=1e+02 Score=24.36 Aligned_cols=8 Identities=38% Similarity=0.982 Sum_probs=6.3
Q ss_pred CCCCCCCc
Q psy16914 4 LHPSGPET 11 (284)
Q Consensus 4 ~~~~~~~~ 11 (284)
+||+||.|
T Consensus 85 ~Hpdsp~t 92 (184)
T d1xbra_ 85 IHPDSPNF 92 (184)
T ss_dssp ECTTCSEE
T ss_pred ECCCCCcC
Confidence 58888875
No 5
>d1vqoy1 c.9.2.1 (Y:95-236) Ribosomal protein L32e {Archaeon Haloarcula marismortui [TaxId: 2238]}
Probab=2.99 E-value=2e+02 Score=22.24 Aligned_cols=10 Identities=50% Similarity=0.723 Sum_probs=6.9
Q ss_pred CCCCCCCCCc
Q psy16914 2 KRLHPSGPET 11 (284)
Q Consensus 2 ~~~~~~~~~~ 11 (284)
.-|||||-..
T Consensus 81 Rgl~PsGf~~ 90 (142)
T d1vqoy1 81 RGKHPSGFEE 90 (142)
T ss_dssp TTCCTTSCEE
T ss_pred cccCcCcCEE
Confidence 4589998643
No 6
>d1h54a2 b.30.5.3 (A:1-268) Lactobacillus maltose phosphorylase, N-terminal domain {Lactobacillus brevis [TaxId: 1580]}
Probab=2.91 E-value=2e+02 Score=22.01 Aligned_cols=13 Identities=31% Similarity=0.414 Sum_probs=10.6
Q ss_pred CCCCCCCCCCcCC
Q psy16914 1 MKRLHPSGPETLQ 13 (284)
Q Consensus 1 ~~~~~~~~~~~l~ 13 (284)
||+|.|..|-+|.
T Consensus 1 ~k~~~~~d~W~l~ 13 (268)
T d1h54a2 1 MKRIFEVQPWNVI 13 (268)
T ss_dssp CCCCSCCCSSEEE
T ss_pred CCcccCCCCcEEE
Confidence 8999999987663
No 7
>d1euea_ d.120.1.1 (A:) Cytochrome b5 {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=2.81 E-value=1.2e+02 Score=20.43 Aligned_cols=12 Identities=42% Similarity=0.612 Sum_probs=8.4
Q ss_pred CCCCCCCCcCCc
Q psy16914 3 RLHPSGPETLQP 14 (284)
Q Consensus 3 ~~~~~~~~~l~~ 14 (284)
..||+|+..|..
T Consensus 37 ~~HPGG~~~i~~ 48 (86)
T d1euea_ 37 SEHPGGEEILLE 48 (86)
T ss_dssp GGCTTCSHHHHT
T ss_pred eccCcchHHHHH
Confidence 468999876643
No 8
>d1mj4a_ d.120.1.1 (A:) Sulfite oxidase, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=2.68 E-value=1e+02 Score=20.51 Aligned_cols=11 Identities=55% Similarity=1.066 Sum_probs=7.5
Q ss_pred CCCCCCCCcCC
Q psy16914 3 RLHPSGPETLQ 13 (284)
Q Consensus 3 ~~~~~~~~~l~ 13 (284)
..||.|+..|.
T Consensus 36 ~~HPGG~~~i~ 46 (80)
T d1mj4a_ 36 DLHPGGPSKLM 46 (80)
T ss_dssp GGSTTCHHHHH
T ss_pred hhcCChhHHHH
Confidence 35898876554
No 9
>d1pmia_ b.82.1.3 (A:) Phosphomannose isomerase {Yeast (Candida albicans) [TaxId: 5476]}
Probab=2.18 E-value=2.1e+02 Score=24.40 Aligned_cols=9 Identities=44% Similarity=0.663 Sum_probs=5.1
Q ss_pred CCCCCCCcC
Q psy16914 4 LHPSGPETL 12 (284)
Q Consensus 4 ~~~~~~~~l 12 (284)
-|||||.++
T Consensus 52 ~Hp~~pS~v 60 (440)
T d1pmia_ 52 THPSVPSKA 60 (440)
T ss_dssp CCTTSCEEE
T ss_pred eCCCCceee
Confidence 366666554
No 10
>d1soxa2 d.120.1.1 (A:3-93) Sulfite oxidase, N-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=2.09 E-value=1.7e+02 Score=19.83 Aligned_cols=12 Identities=42% Similarity=1.057 Sum_probs=0.0
Q ss_pred CCCCCCCCCCcC
Q psy16914 1 MKRLHPSGPETL 12 (284)
Q Consensus 1 ~~~~~~~~~~~l 12 (284)
+-..||.|+..|
T Consensus 34 f~~~HPGG~~~i 45 (91)
T d1soxa2 34 FVELHPGGPDKI 45 (91)
T ss_dssp TTTTSTTCHHHH
T ss_pred eecccCCcHHHH
Done!