RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy16914
(284 letters)
>gnl|CDD|237177 PRK12704, PRK12704, phosphodiesterase; Provisional.
Length = 520
Score = 48.6 bits (117), Expect = 2e-06
Identities = 61/167 (36%), Positives = 86/167 (51%), Gaps = 9/167 (5%)
Query: 62 AKEKTRELAKEETRELAKEETSELAKEKTRELAKEETSELAKEETSELAKEKTRELAKEE 121
AK K E + E AK+E + KE E AKEE +L + E + +E+ EL K E
Sbjct: 31 AKIKEAEEEAKRILEEAKKEAEAIKKEALLE-AKEEIHKL-RNEFEKELRERRNELQKLE 88
Query: 122 TRELAKEET----SELAKEETRELAKEKTRELAKEKTRELAKEKTRELAKEKTRELAKEE 177
R L KEE EL ++ EL K++ K++ E +E+ EL +E+ +EL E
Sbjct: 89 KRLLQKEENLDRKLELLEKREEELEKKEKELEQKQQELEKKEEELEELIEEQLQEL--ER 146
Query: 178 TSELAKEETRELAKEETSELAKEETSELAKEETRELAKEETSELAKE 224
S L EE +E+ E+ E A+ E + L KE E AKEE + AKE
Sbjct: 147 ISGLTAEEAKEILLEKVEEEARHEAAVLIKEIEEE-AKEEADKKAKE 192
Score = 44.8 bits (107), Expect = 3e-05
Identities = 55/151 (36%), Positives = 80/151 (52%), Gaps = 9/151 (5%)
Query: 30 AKEETSELAKEETSELAKEKTSELAKEETSELAKEKTRELAKEETRELAKEET----SEL 85
AK+E + KE E AKE+ +L + E + +E+ EL K E R L KEE EL
Sbjct: 47 AKKEAEAIKKEALLE-AKEEIHKL-RNEFEKELRERRNELQKLEKRLLQKEENLDRKLEL 104
Query: 86 AKEKTRELAKEETSELAKEETSELAKEKTRELAKEETRELAKEETSELAKEETRELAKEK 145
+++ EL K+E K++ E +E+ EL +E+ +EL E S L EE +E+ EK
Sbjct: 105 LEKREEELEKKEKELEQKQQELEKKEEELEELIEEQLQEL--ERISGLTAEEAKEILLEK 162
Query: 146 TRELAKEKTRELAKEKTRELAKEKTRELAKE 176
E A+ + L KE E AKE+ + AKE
Sbjct: 163 VEEEARHEAAVLIKEIEEE-AKEEADKKAKE 192
Score = 40.1 bits (95), Expect = 8e-04
Identities = 54/173 (31%), Positives = 81/173 (46%), Gaps = 21/173 (12%)
Query: 108 ELAKEKTRELAKEETRELAKEETSELAKEETRELAKEKTRELAKEKTRELAKEKTRELAK 167
+ A+E+ + + +E +E E + A E +E + E KE +E+ EL K
Sbjct: 34 KEAEEEAKRILEEAKKEA--EAIKKEALLEAKEEIHKLRNEFEKEL-----RERRNELQK 86
Query: 168 EKTRELAKEETSELAKEETRELAKEETSELAKEETSELAKEETRELAKEETSELAKEKTR 227
+ R L KEE + + L K E EL K+E K++ E +EE EL +E+ +
Sbjct: 87 LEKRLLQKEENLD---RKLELLEKRE-EELEKKEKELEQKQQELEKKEEELEELIEEQLQ 142
Query: 228 ELAKEEETRELAKEKTRELAKEKTRELAKEETSEL-------AKEETKKLAKE 273
EL E L E+ +E+ EK E A+ E + L AKEE K AKE
Sbjct: 143 EL---ERISGLTAEEAKEILLEKVEEEARHEAAVLIKEIEEEAKEEADKKAKE 192
Score = 35.1 bits (82), Expect = 0.033
Identities = 52/146 (35%), Positives = 76/146 (52%), Gaps = 11/146 (7%)
Query: 142 AKEKTRELAKEKTRELAKEKTRELAKEKTRELAKEETSELAKEETRELAKEETSELAKEE 201
AK K E ++ E AK++ + KE E AKEE +L E +EL +E +EL K E
Sbjct: 31 AKIKEAEEEAKRILEEAKKEAEAIKKEALLE-AKEEIHKLRNEFEKEL-RERRNELQKLE 88
Query: 202 TSELAKEET-----RELAKEETSELAKEKTRELAKEEETRELAKEKTRELAKEKTRELAK 256
L KEE L K E E ++K +EL ++++ E +E+ EL +E+ +EL
Sbjct: 89 KRLLQKEENLDRKLELLEKRE--EELEKKEKELEQKQQELEKKEEELEELIEEQLQEL-- 144
Query: 257 EETSELAKEETKKLAKEKTRELAKEE 282
E S L EE K++ EK E A+ E
Sbjct: 145 ERISGLTAEEAKEILLEKVEEEARHE 170
Score = 32.4 bits (75), Expect = 0.23
Identities = 42/120 (35%), Positives = 60/120 (50%), Gaps = 11/120 (9%)
Query: 19 DKSAKEETSELAKEETSELAKEET----SELAKEKTSELAKEETSELAKEKTRELAKEET 74
+K +E +EL K E L KEE EL +++ EL K+E K++ E +EE
Sbjct: 74 EKELRERRNELQKLEKRLLQKEENLDRKLELLEKREEELEKKEKELEQKQQELEKKEEEL 133
Query: 75 RELAK------EETSELAKEKTRELAKEETSELAKEETSELAKEKTRELAKEETRELAKE 128
EL + E S L E+ +E+ E+ E A+ E + L KE E AKEE + AKE
Sbjct: 134 EELIEEQLQELERISGLTAEEAKEILLEKVEEEARHEAAVLIKEIEEE-AKEEADKKAKE 192
Score = 28.2 bits (64), Expect = 5.2
Identities = 33/90 (36%), Positives = 49/90 (54%), Gaps = 3/90 (3%)
Query: 15 EERGDKSAKEETSELAKEETSELAKEETSELAKEKTSELAKEETSELAKEKTRELAKEET 74
E+R ++ K+E K++ E +EE EL +E+ EL E S L E+ +E+ E+
Sbjct: 106 EKREEELEKKEKELEQKQQELEKKEEELEELIEEQLQEL--ERISGLTAEEAKEILLEKV 163
Query: 75 RELAKEETSELAKEKTRELAKEETSELAKE 104
E A+ E + L KE E AKEE + AKE
Sbjct: 164 EEEARHEAAVLIKEIEEE-AKEEADKKAKE 192
>gnl|CDD|188306 TIGR03319, RNase_Y, ribonuclease Y. Members of this family are
RNase Y, an endoribonuclease. The member from Bacillus
subtilis, YmdA, has been shown to be involved in
turnover of yitJ riboswitch [Transcription, Degradation
of RNA].
Length = 514
Score = 44.9 bits (107), Expect = 3e-05
Identities = 64/188 (34%), Positives = 93/188 (49%), Gaps = 14/188 (7%)
Query: 78 AKEETSELAKEKTRELAKEETSELAKEETSELAKEKTRELAKEETRELAKEETSELAKEE 137
K ++E ++ E AK+E L KE E AKE+ +L E REL KE +EL + E
Sbjct: 25 KKLGSAEELAKRIIEEAKKEAETLKKEALLE-AKEEVHKLRAELEREL-KERRNELQRLE 82
Query: 138 TRELAKEKT----RELAKEKTRELAKEKTRELAKEKTRELAKEETSELAKEETRELAKEE 193
R L +E+T E +K L K++ KEK + +EE EL E+ EL E
Sbjct: 83 RRLLQREETLDRKMESLDKKEENLEKKEKELSNKEKNLDEKEEELEELIAEQREEL--ER 140
Query: 194 TSELAKEETSELAKEETRELAKEETSELAKEKTRELAKEEETRELAKEKTRELAKEKTRE 253
S L +EE E+ EE E A+ E ++L KE EEE +E A +K +E+ +
Sbjct: 141 ISGLTQEEAKEILLEEVEEEARHEAAKLIKE------IEEEAKEEADKKAKEILATAIQR 194
Query: 254 LAKEETSE 261
A + +E
Sbjct: 195 YAGDHVAE 202
Score = 41.8 bits (99), Expect = 3e-04
Identities = 57/153 (37%), Positives = 79/153 (51%), Gaps = 9/153 (5%)
Query: 28 ELAKEETSELAKEETSELAKEKTSELAKEETSELAKEKTRELAKEETRELAKEET----S 83
E AK+E L KE E AKE+ +L E EL KE+ EL + E R L +EET
Sbjct: 39 EEAKKEAETLKKEALLE-AKEEVHKLRAELEREL-KERRNELQRLERRLLQREETLDRKM 96
Query: 84 ELAKEKTRELAKEETSELAKEETSELAKEKTRELAKEETRELAKEETSELAKEETRELAK 143
E +K L K+E KE+ + +E+ EL E+ EL E S L +EE +E+
Sbjct: 97 ESLDKKEENLEKKEKELSNKEKNLDEKEEELEELIAEQREEL--ERISGLTQEEAKEILL 154
Query: 144 EKTRELAKEKTRELAKEKTRELAKEKTRELAKE 176
E+ E A+ + +L KE E AKE+ + AKE
Sbjct: 155 EEVEEEARHEAAKLIKEIEEE-AKEEADKKAKE 186
Score = 40.3 bits (95), Expect = 7e-04
Identities = 53/153 (34%), Positives = 79/153 (51%), Gaps = 8/153 (5%)
Query: 132 ELAKEETRELAKEKTRELAKEKTRELAKEKTRELAKEKTRELAKEETSELAKEETRELAK 191
E AK+E L KE E AKE+ +L E REL KE+ EL + E L +EET L +
Sbjct: 39 EEAKKEAETLKKEALLE-AKEEVHKLRAELEREL-KERRNELQRLERRLLQREET--LDR 94
Query: 192 EETSELAKEETSELAKEETRELAK---EETSELAKEKTRELAKEEETRELAKEKTRELAK 248
+ S KEE E ++E K E+ EL + + + E L +E+ +E+
Sbjct: 95 KMESLDKKEENLEKKEKELSNKEKNLDEKEEELEELIAEQREELERISGLTQEEAKEILL 154
Query: 249 EKTRELAKEETSELAKEETKKLAKEKTRELAKE 281
E+ E A+ E ++L KE ++ AKE+ + AKE
Sbjct: 155 EEVEEEARHEAAKLIKEIEEE-AKEEADKKAKE 186
Score = 35.7 bits (83), Expect = 0.025
Identities = 42/120 (35%), Positives = 60/120 (50%), Gaps = 11/120 (9%)
Query: 19 DKSAKEETSELAKEETSELAKEET----SELAKEKTSELAKEETSELAKEKTRELAKEET 74
++ KE +EL + E L +EET E +K L K+E KEK + +EE
Sbjct: 68 ERELKERRNELQRLERRLLQREETLDRKMESLDKKEENLEKKEKELSNKEKNLDEKEEEL 127
Query: 75 RELAKEETSELAK------EKTRELAKEETSELAKEETSELAKEKTRELAKEETRELAKE 128
EL E+ EL + E+ +E+ EE E A+ E ++L KE E AKEE + AKE
Sbjct: 128 EELIAEQREELERISGLTQEEAKEILLEEVEEEARHEAAKLIKEIEEE-AKEEADKKAKE 186
Score = 34.5 bits (80), Expect = 0.062
Identities = 47/149 (31%), Positives = 70/149 (46%), Gaps = 14/149 (9%)
Query: 147 RELAKEKTRELAKEKTRELAKEKTRELA--KEETSELAKEETRELAKEETSELAKEETSE 204
R+ EK A+E + + +E +E K+E AKEE +L E EL KE +E
Sbjct: 19 RKRIAEKKLGSAEELAKRIIEEAKKEAETLKKEALLEAKEEVHKLRAELEREL-KERRNE 77
Query: 205 LAKEETRELAKEET----SELAKEKTRELAKEEE-----TRELAKEKTRELAKEKTRELA 255
L + E R L +EET E +K L K+E+ + L EK EL + +
Sbjct: 78 LQRLERRLLQREETLDRKMESLDKKEENLEKKEKELSNKEKNL-DEKEEELEELIAEQRE 136
Query: 256 K-EETSELAKEETKKLAKEKTRELAKEET 283
+ E S L +EE K++ E+ E A+ E
Sbjct: 137 ELERISGLTQEEAKEILLEEVEEEARHEA 165
Score = 29.1 bits (66), Expect = 2.7
Identities = 32/90 (35%), Positives = 49/90 (54%), Gaps = 3/90 (3%)
Query: 15 EERGDKSAKEETSELAKEETSELAKEETSELAKEKTSELAKEETSELAKEKTRELAKEET 74
+++ + K+E KE+ + +EE EL E+ EL E S L +E+ +E+ EE
Sbjct: 100 DKKEENLEKKEKELSNKEKNLDEKEEELEELIAEQREEL--ERISGLTQEEAKEILLEEV 157
Query: 75 RELAKEETSELAKEKTRELAKEETSELAKE 104
E A+ E ++L KE E AKEE + AKE
Sbjct: 158 EEEARHEAAKLIKEIEEE-AKEEADKKAKE 186
>gnl|CDD|235600 PRK05771, PRK05771, V-type ATP synthase subunit I; Validated.
Length = 646
Score = 43.0 bits (102), Expect = 1e-04
Identities = 69/268 (25%), Positives = 105/268 (39%), Gaps = 33/268 (12%)
Query: 2 KRLHPSGPETLQPEERGDKSAKEETSELAKEETSELAKEETSELAKEKTSELAKEETSEL 61
+ LH G + E+ ++ + E +L T + SE + S L K
Sbjct: 23 EALHELG--VVHIEDLKEELSNERLRKLRSLLT------KLSEALDKLRSYLPKLNPLRE 74
Query: 62 AKEKTRELAKEETRELAKEETSELAKEKTRELAKEETSELAKEETSELAKEKTR------ 115
K+K + EE + +EE ++ KE +EL +E SEL + E EL +E R
Sbjct: 75 EKKKVSVKSLEELIKDVEEELEKIEKE-IKELEEEI-SEL-ENEIKELEQEIERLEPWGN 131
Query: 116 ---ELAKEETRELAKEETSELAKEETRELAKEKTRELAKEKTRELAKEKT-------REL 165
+L+ + + +++ EL E E + K +EL
Sbjct: 132 FDLDLSLLLGFKYVSVFVGTVPEDKLEELKLESDVE--NVEYISTDKGYVYVVVVVLKEL 189
Query: 166 AKEKTRELAKEETSELAKEETRELAKEETSELAKEETSELAKEETRELAKEETSELAKEK 225
+ E EL K L EE E E+ KEE E+ KE RE EE ELAK+
Sbjct: 190 SDEVEEELKKLGFERLELEEEGT-PSELIREI-KEELEEIEKE--RESLLEELKELAKKY 245
Query: 226 TRELAKEEETRELAKEKTRELAKEKTRE 253
EL E E+ E+ L+K +
Sbjct: 246 LEELLALYEYLEIELERAEALSKFLKTD 273
Score = 40.7 bits (96), Expect = 6e-04
Identities = 61/243 (25%), Positives = 96/243 (39%), Gaps = 25/243 (10%)
Query: 36 ELAKEETSELAKE--KTSELAKEETSELAKEKTRELAKEETRELAKEETSELAKEKTREL 93
EL+ E +L K SE + S L K +EE ++++ + EL K+ EL
Sbjct: 39 ELSNERLRKLRSLLTKLSEALDKLRSYLPKLNP---LREEKKKVSVKSLEELIKDVEEEL 95
Query: 94 AK--EETSELAKEETSELAKEKTRELAKEETRELAKEETSELAKEETRELAK----EKTR 147
K +E EL +E SEL E + E E +L+ +
Sbjct: 96 EKIEKEIKELEEEI-SELENEIKELEQEIERLEPWGNFDLDLSLLLGFKYVSVFVGTVPE 154
Query: 148 ELAKEKTRELAKEKTRELAKEKT---------RELAKEETSELAKEETRELAKEETSELA 198
+ +E E E ++ +K +EL+ E EL K L + E
Sbjct: 155 DKLEELKLESDVENVEYISTDKGYVYVVVVVLKELSDEVEEELKKLGFERL-ELEEEGTP 213
Query: 199 KEETSELAKEETRELAKEETSELAKEKTRELAKEEETRELAKEKTRELAKEKTRELAKEE 258
E E+ KEE E+ KE E E+ +ELAK+ LA + E+ E+ L+K
Sbjct: 214 SELIREI-KEELEEIEKER--ESLLEELKELAKKYLEELLALYEYLEIELERAEALSKFL 270
Query: 259 TSE 261
++
Sbjct: 271 KTD 273
Score = 40.3 bits (95), Expect = 0.001
Identities = 59/223 (26%), Positives = 92/223 (41%), Gaps = 32/223 (14%)
Query: 60 ELAKEKTRELAKE--ETRELAKEETSELAKEKTRELAKEETSELAKEETSELAKEKTREL 117
EL+ E+ R+L + E + S L K +EE +++ + EL K+ EL
Sbjct: 39 ELSNERLRKLRSLLTKLSEALDKLRSYLPKLNP---LREEKKKVSVKSLEELIKDVEEEL 95
Query: 118 AK--EETRELAKEETSELAKEETRELAKEKTR---------ELAKEKTRELAKEKTRELA 166
K +E +EL +E SEL + E +EL +E R +L+ + +
Sbjct: 96 EKIEKEIKELEEEI-SEL-ENEIKELEQEIERLEPWGNFDLDLSLLLGFKYVSVFVGTVP 153
Query: 167 KEKTRELAKEETSELAKEETRELAKEET-------SELAKEETSELAKEETRELAKEETS 219
++K EL + S++ E K EL+ E EL K L E
Sbjct: 154 EDKLEEL--KLESDVENVEYISTDKGYVYVVVVVLKELSDEVEEELKKLGFERL---ELE 208
Query: 220 ELAKEKTRELAKEEETRELAKEKTRELAKEKTRELAKEETSEL 262
E + EL +E + EK RE E+ +ELAK+ EL
Sbjct: 209 E--EGTPSELIREIKEELEEIEKERESLLEELKELAKKYLEEL 249
Score = 38.0 bits (89), Expect = 0.005
Identities = 50/212 (23%), Positives = 80/212 (37%), Gaps = 38/212 (17%)
Query: 29 LAKEETSELAKEETSELAKEKTSELAK--EETSELAKEKTRELAKEETRELAKEE----- 81
+EE +++ + EL K+ EL K +E EL +E + + E +EL +E
Sbjct: 71 PLREEKKKVSVKSLEELIKDVEEELEKIEKEIKELEEEISE--LENEIKELEQEIERLEP 128
Query: 82 ----TSELAKEKTRELAKEETSELAKEETSELAKEKTRELAKEET-------------RE 124
+L+ + + +++ EL E E + + +E
Sbjct: 129 WGNFDLDLSLLLGFKYVSVFVGTVPEDKLEELKLESDVENVEYISTDKGYVYVVVVVLKE 188
Query: 125 LAKEETSELAKEETRELAKEKTRELAKEKT--RELAKEKTRELAKEKTRELAKEETSELA 182
L+ E EL K L EL +E T + + K EK RE EE ELA
Sbjct: 189 LSDEVEEELKKLGFERL------ELEEEGTPSELIREIKEELEEIEKERESLLEELKELA 242
Query: 183 KEETRELAKEE---TSELAKEE-TSELAKEET 210
K+ EL EL + E S+ K +
Sbjct: 243 KKYLEELLALYEYLEIELERAEALSKFLKTDK 274
Score = 37.6 bits (88), Expect = 0.007
Identities = 55/228 (24%), Positives = 93/228 (40%), Gaps = 34/228 (14%)
Query: 64 EKTRELAKEETRELAKE--ETSELAKEKTRELAKEETSELAKEETSELAKEKTRELAKEE 121
+ EL+ E R+L + SE A +K R + +EE +++ + EL K+
Sbjct: 35 DLKEELSNERLRKLRSLLTKLSE-ALDKLRSYLPKL--NPLREEKKKVSVKSLEELIKDV 91
Query: 122 TRELAKEETSELAKEETRELAKEKTRELAKEKTRELAKEKTR---------ELAKEKTRE 172
EL K E +E +EL +E + + + +EL +E R +L+ +
Sbjct: 92 EEELEKIE------KEIKELEEEISE--LENEIKELEQEIERLEPWGNFDLDLSLLLGFK 143
Query: 173 LAKEETSELAKEETRELAKEETSELAKEETSELAKEET-------RELAKEETSELAKEK 225
+ +++ EL + S++ E K +EL+ E EL K
Sbjct: 144 YVSVFVGTVPEDKLEEL--KLESDVENVEYISTDKGYVYVVVVVLKELSDEVEEELKKLG 201
Query: 226 TRELAKEEE---TRELAKEKTRELAKEKTRELAKEETSELAKEETKKL 270
L EEE + + + K EK RE EE ELAK+ ++L
Sbjct: 202 FERLELEEEGTPSELIREIKEELEEIEKERESLLEELKELAKKYLEEL 249
>gnl|CDD|235334 PRK05035, PRK05035, electron transport complex protein RnfC;
Provisional.
Length = 695
Score = 42.6 bits (101), Expect = 2e-04
Identities = 42/274 (15%), Positives = 98/274 (35%), Gaps = 26/274 (9%)
Query: 22 AKEETSELAKE-ETSELAKE----ETSELAKEKTSELAKEETSELAKEKTRELAKEETRE 76
AK E + +E + +E AK + L +EK + A+ K+ A ++
Sbjct: 434 AKAEIRAIEQEKKKAEEAKARFEARQARLEREKAAREAR------HKKAAEARAAKDKDA 487
Query: 77 LAKEETSELAKEKTRELAKEETSELAKEETSELAKEKTRELAKEETRELAKEETSELAKE 136
+A AK+ + + ++ +A + R+ + + + K+
Sbjct: 488 VAAALARVKAKKAAATQPIVIKAGARPDNSAVIAAREARKAQARARQAEKQAAAAADPKK 547
Query: 137 ETRELAKEKTRELAKEKTRELAKEKTRELAKEKTRELAKEETSELAKEETRELAKEETSE 196
A + AK K + ++ A AK ++ A++ S
Sbjct: 548 AAVAAAIAR----AKAKKAAQQAANAEAEEEVDPKKAAVAAAIARAK--AKKAAQQAASA 601
Query: 197 LAKEETSELAKEETR---ELAKEETSELAKEKTRELAKEEETRELAKEKTRELAKEKTRE 253
+E+ +E+ ++ +A+ + + ++ E + + R+ A AK +
Sbjct: 602 EPEEQVAEVDPKKAAVAAAIARAKAKKAEQQANAEPEEPVDPRKAAVAAAIARAKARKAA 661
Query: 254 LAKEETSELAKEETKK------LAKEKTRELAKE 281
+ E+ KK +A+ K ++ A++
Sbjct: 662 QQQANAEPEEAEDPKKAAVAAAIARAKAKKAAQQ 695
Score = 33.8 bits (78), Expect = 0.10
Identities = 32/180 (17%), Positives = 61/180 (33%), Gaps = 26/180 (14%)
Query: 118 AKEETRELAKE-ETSELAKE--ETRE--LAKEKTRELA--KEKTRELAKEKTRELAKEKT 170
AK E R + +E + +E AK E R+ L +EK A K+ A + +A
Sbjct: 434 AKAEIRAIEQEKKKAEEAKARFEARQARLEREKAAREARHKKAAEARAAKDKDAVAAALA 493
Query: 171 RELAKEETSELAKEETRELAKEETSELAKEETSELAKEETRELAKEETSELAKEKTRELA 230
R AK+ + + ++ +A E + + + + K+ A
Sbjct: 494 RVKAKKAAATQPIVIKAGARPDNSAVIAAREARKAQARARQAEKQAAAAADPKKAAVAAA 553
Query: 231 KEEETRELAKEKTRELAKEKTRELAKEETSELAKEETKK------LAKEKTRELAKEETN 284
AK K + + KK +A+ K ++ A++ +
Sbjct: 554 -------------IARAKAKKAAQQAANAEAEEEVDPKKAAVAAAIARAKAKKAAQQAAS 600
>gnl|CDD|224188 COG1269, NtpI, Archaeal/vacuolar-type H+-ATPase subunit I [Energy
production and conversion].
Length = 660
Score = 40.8 bits (96), Expect = 6e-04
Identities = 41/221 (18%), Positives = 61/221 (27%), Gaps = 19/221 (8%)
Query: 21 SAKEETSELAKEETSELAKEETSELAKEKTSELAKEETSELAK-EKTRELAKEETRELAK 79
S E + + + EK K + EK +E TR+L
Sbjct: 61 SLLSEVLDYLRSVKGLEGRLFILPEEVEKLEAELKSLEEVIKPAEKFSSEVEELTRKLE- 119
Query: 80 EETSELAKEK----TRELAKEETSELAKEETSELAKEKT----RELAKEETRELAKEETS 131
E SEL +E E + L + S L K L + E E
Sbjct: 120 ERLSELDEELEDLEDLLEELEPLAYLD-FDLSLLRGLKFLLVRLGLVRREKLEALVGVIE 178
Query: 132 ELAKEETRELAKE-----KTRELAKEKTRELAKEKTRELAKEKTRELAKEETSELAKEET 186
+ + +K ++ E EL + + E EE
Sbjct: 179 DEVALYGENVEASVVIVVAHGAEDLDKVSKILNELGFELYEVPEFDGGPSE-LISELEEV 237
Query: 187 RELAKEETSELAKEETSELAKEETRELAKEETSELAKEKTR 227
++E L E + K LA E L EK
Sbjct: 238 IAEIQDELESLRSELEALAEKIAEELLAVREI--LEIEKAL 276
Score = 31.2 bits (71), Expect = 0.75
Identities = 33/184 (17%), Positives = 54/184 (29%), Gaps = 16/184 (8%)
Query: 108 ELAKEKTRELAKEETRELA--KEETSELAKEETRELAKEKTRELAKEKTRELAKEKTREL 165
EL L +E L + E ++A+ L+ + + R +
Sbjct: 16 SELDPVLAELHDFGLVHLEDLEEGEKGLKELEKLKVAEVAQISLSSLLSE--VLDYLRSV 73
Query: 166 AKEKTRELAKEETSELAKEETRELAKEETSELAKEETSELAKEETRELAKEETSELAKEK 225
+ R E E + E + L + E+ S +E TR+L E SEL E+
Sbjct: 74 KGLEGRLFILPEEVEKLEAELKSLEEVIKP---AEKFSSEVEELTRKLE-ERLSEL-DEE 128
Query: 226 TRELAKEEETRELAK---EKTRELAKEKT----RELAKEETSELAKEETKKLAKEKTREL 278
+L E E L K L + E E + +
Sbjct: 129 LEDLEDLLEELEPLAYLDFDLSLLRGLKFLLVRLGLVRREKLEALVGVIEDEVALYGENV 188
Query: 279 AKEE 282
Sbjct: 189 EASV 192
>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional.
Length = 2084
Score = 38.2 bits (88), Expect = 0.004
Identities = 71/280 (25%), Positives = 120/280 (42%), Gaps = 7/280 (2%)
Query: 10 ETLQPEERGDKSAKEETSELAKEETSELAKEETSELAKEKTSELAKEETSELAKEKTREL 69
E + +E K++ E K E + A E + + K ++ AK++ E K+
Sbjct: 1276 EARKADELKKAEEKKKADEAKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKKADAAK 1335
Query: 70 AKEETRELAKEETSELAKEKTRELAKEETSELAKEETSELAKEKTRELAKEETRELAKEE 129
K E + A E A+ E E A E+ E AK+K K+ + +E
Sbjct: 1336 KKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADE 1395
Query: 130 TSELAKEETRELAKEKTRELAKEKTRELAKE----KTRELAKEKTRELAKEETSELAKEE 185
+ A+E+ ++ + K AK+K E K+ K + AK+K E K + ++ EE
Sbjct: 1396 AKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEE 1455
Query: 186 TR---ELAKEETSELAKEETSELAKEETRELAKEETSELAKEKTRELAKEEETRELAKEK 242
+ E K+ +E + A+E + ++ +E AK+K E K E ++ A E
Sbjct: 1456 AKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEA 1515
Query: 243 TRELAKEKTRELAKEETSELAKEETKKLAKEKTRELAKEE 282
+ +K E K E ++ A E K K+K EL K E
Sbjct: 1516 KKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADELKKAE 1555
Score = 35.9 bits (82), Expect = 0.027
Identities = 64/277 (23%), Positives = 116/277 (41%), Gaps = 4/277 (1%)
Query: 10 ETLQPEERGDKSAKEETSELAKEETSELAKEETSELAKEKTSELAKEETSELAKEKTREL 69
E + E A+ E E A E+ E AK+K K+ + ++ ++
Sbjct: 1340 EAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKK 1399
Query: 70 AKEETRELAKEETSELAKEKTRELAKEETSELAKEETSELAKEKTRELAKEETRELAKEE 129
A+E+ ++ + + + AK+K E K+ + +E + A+E + ++ E AK+
Sbjct: 1400 AEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKA 1459
Query: 130 TSELAKEETRELAKEKTRELAKEKTRELAKEKTRELAKE----KTRELAKEETSELAKEE 185
K E + A E ++ + K + AK+K E K+ K AK++ E K E
Sbjct: 1460 EEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAE 1519
Query: 186 TRELAKEETSELAKEETSELAKEETRELAKEETSELAKEKTRELAKEEETRELAKEKTRE 245
+ A E ++ E K E ++ A E +K E K EE ++ ++K
Sbjct: 1520 EAKKADEAKKAEEAKKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMA 1579
Query: 246 LAKEKTRELAKEETSELAKEETKKLAKEKTRELAKEE 282
L K + + A+E E + ++ K K E K E
Sbjct: 1580 LRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAE 1616
Score = 35.5 bits (81), Expect = 0.034
Identities = 61/263 (23%), Positives = 116/263 (44%), Gaps = 1/263 (0%)
Query: 15 EERGDKSAKEETSELAKEETSELAKEETSELAKEKTSELAKEETSELAKEKTRELAKEET 74
E + AK++ E K+ + K E ++ A E A+ E + + A E+
Sbjct: 1313 EAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKK 1372
Query: 75 RELAKEETSELAKEKTRELAKEETSELAKEETSELAKEKTRELAKEETRELAKEETSELA 134
+E AK++ K+ + +E + A+E+ + + K AK++ E K+ +
Sbjct: 1373 KEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKK 1432
Query: 135 KEETRELAKEKTRELAKEKTRELAKEKTRELAKEKTRELAKEETSELAKEETRELAKEET 194
+E ++ A+E + +K E AK K E K+ +E + A+E + ++
Sbjct: 1433 ADEAKKKAEEAKKADEAKKKAEEAK-KAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKK 1491
Query: 195 SELAKEETSELAKEETRELAKEETSELAKEKTRELAKEEETRELAKEKTRELAKEKTREL 254
+E AK++ E K + +E + + K + AK+ E + A E + K+K EL
Sbjct: 1492 AEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADEL 1551
Query: 255 AKEETSELAKEETKKLAKEKTRE 277
K E + A+E+ K +K E
Sbjct: 1552 KKAEELKKAEEKKKAEEAKKAEE 1574
Score = 34.7 bits (79), Expect = 0.055
Identities = 55/267 (20%), Positives = 102/267 (38%)
Query: 10 ETLQPEERGDKSAKEETSELAKEETSELAKEETSELAKEKTSELAKEETSELAKEKTREL 69
E + E+ A + E K E + A++ A +K E K+ E+ R
Sbjct: 1192 ELRKAEDARKAEAARKAEEERKAEEARKAEDAKKAEAVKKAEEAKKDAEEAKKAEEERNN 1251
Query: 70 AKEETRELAKEETSELAKEKTRELAKEETSELAKEETSELAKEKTRELAKEETRELAKEE 129
+ E A+ + + + EL K E + A E + K++ E K+
Sbjct: 1252 EEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEAKKAEEKKKADEAKKKA 1311
Query: 130 TSELAKEETRELAKEKTRELAKEKTRELAKEKTRELAKEKTRELAKEETSELAKEETREL 189
+E ++ A+E ++ K + +K E AK + A E + K E E
Sbjct: 1312 EEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEK 1371
Query: 190 AKEETSELAKEETSELAKEETRELAKEETSELAKEKTRELAKEEETRELAKEKTRELAKE 249
KEE + A + +++ + AK++ E K+ ++ + K + K+
Sbjct: 1372 KKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKK 1431
Query: 250 KTRELAKEETSELAKEETKKLAKEKTR 276
K E K+ +E KK A+E +
Sbjct: 1432 KADEAKKKAEEAKKADEAKKKAEEAKK 1458
Score = 34.3 bits (78), Expect = 0.070
Identities = 56/263 (21%), Positives = 109/263 (41%)
Query: 15 EERGDKSAKEETSELAKEETSELAKEETSELAKEKTSELAKEETSELAKEKTRELAKEET 74
EE ++ +E AK+ K E ++ A E + + + ++ AK+K E K+
Sbjct: 1441 EEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKAD 1500
Query: 75 RELAKEETSELAKEKTRELAKEETSELAKEETSELAKEKTRELAKEETRELAKEETSELA 134
E + A E + ++ E K E ++ A E + K++ EL K E + A
Sbjct: 1501 EAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADELKKAEELKKA 1560
Query: 135 KEETRELAKEKTRELAKEKTRELAKEKTRELAKEKTRELAKEETSELAKEETRELAKEET 194
+E+ + +K E R+ + K E A+ + EE ++ EE ++ + +
Sbjct: 1561 EEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKI 1620
Query: 195 SELAKEETSELAKEETRELAKEETSELAKEKTRELAKEEETRELAKEKTRELAKEKTREL 254
++ E K+ + KE + E+ ++ +E + + + K E K+K E
Sbjct: 1621 KAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEA 1680
Query: 255 AKEETSELAKEETKKLAKEKTRE 277
K E E E K E+ ++
Sbjct: 1681 KKAEEDEKKAAEALKKEAEEAKK 1703
Score = 34.3 bits (78), Expect = 0.076
Identities = 53/258 (20%), Positives = 106/258 (41%)
Query: 16 ERGDKSAKEETSELAKEETSELAKEETSELAKEKTSELAKEETSELAKEKTRELAKEETR 75
++ +++ K+ EE + E A+ + K EL K E +
Sbjct: 1230 KKAEEAKKDAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEK 1289
Query: 76 ELAKEETSELAKEKTRELAKEETSELAKEETSELAKEKTRELAKEETRELAKEETSELAK 135
+ A E K+K E K+ +E + A+E ++ + + ++ +E AK
Sbjct: 1290 KKADEAKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAK 1349
Query: 136 EETRELAKEKTRELAKEKTRELAKEKTRELAKEKTRELAKEETSELAKEETRELAKEETS 195
E A E K + E KE+ ++ A ++ +++ ++ AK++ E K+
Sbjct: 1350 AEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADE 1409
Query: 196 ELAKEETSELAKEETRELAKEETSELAKEKTRELAKEEETRELAKEKTRELAKEKTRELA 255
+ A E ++ +++ ++ AK+K E K +E ++ A+E + +K E A
Sbjct: 1410 LKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEA 1469
Query: 256 KEETSELAKEETKKLAKE 273
K+ K E K A E
Sbjct: 1470 KKADEAKKKAEEAKKADE 1487
Score = 34.3 bits (78), Expect = 0.077
Identities = 58/268 (21%), Positives = 115/268 (42%), Gaps = 2/268 (0%)
Query: 10 ETLQPEERGDKSAKEETSELAKEETSELAKEETSELAKEKTSELAKEETSELAKEKTREL 69
E ++ E + K E + A E K+K E K E + A E ++
Sbjct: 1252 EEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEAKKAEEKKKADEAKKKA 1311
Query: 70 AKEETRELAKEETSELAKEKTRELAKEETSELAKEETSELAKEKTRELAKEETRELAKEE 129
+ + + AK++ E K+ K E ++ A E A+ E E + A E+
Sbjct: 1312 EEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEK 1371
Query: 130 TSELAKEETRELAKEKTRELAKEKTRELAKEKTRELAKEKTRELAKEETSELAKEETREL 189
E AK++ K+ + ++ ++ A+E ++ + K AK++ E K+ +
Sbjct: 1372 KKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKK 1431
Query: 190 AKEETSELAKEETSELAKEETRELAKEETSELAKEKTRELAKEEETRELAKEKTRELAKE 249
+E + K E ++ A E ++ + + +E AK+K E K +E ++ A+E + +
Sbjct: 1432 KADEAKK--KAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAK 1489
Query: 250 KTRELAKEETSELAKEETKKLAKEKTRE 277
K E AK++ E K K ++ ++
Sbjct: 1490 KKAEEAKKKADEAKKAAEAKKKADEAKK 1517
Score = 34.0 bits (77), Expect = 0.094
Identities = 73/273 (26%), Positives = 117/273 (42%), Gaps = 7/273 (2%)
Query: 15 EERGDKSAKEETSELAKEETSELAKEETSELAKEKTSELAKEETSELAKEKTRELAKEET 74
E + AK++ E K E ++ A E +K E K E + A E + ++
Sbjct: 1501 EAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADELKKAEELKKA 1560
Query: 75 RELAKEETSELAKE-KTRELAKEETSELAKEETSELAKEKTRELAKEETRELAKEETSEL 133
E K E ++ A+E K L K E ++ A+E E + E K + E K E +++
Sbjct: 1561 EEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKI 1620
Query: 134 AKEETRELAKEKTRELAKEKTRELAKEKTRELAKEKTRELAKEE----TSELAKEETREL 189
EE ++ +EK + +K K+K EL K + K +E K++ E
Sbjct: 1621 KAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEA 1680
Query: 190 AKEETSELAKEETSELAKEETRELAKEETSELAKEKTRELAKEEETRELAKEKTRELAKE 249
K E E E + EE ++ + + E ++K E K+ E E K K E KE
Sbjct: 1681 KKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAE--EENKIKAEEAKKE 1738
Query: 250 KTRELAKEETSELAKEETKKLAKEKTRELAKEE 282
+ K E ++ +EE KK+A K E K E
Sbjct: 1739 AEEDKKKAEEAKKDEEEKKKIAHLKKEEEKKAE 1771
Score = 34.0 bits (77), Expect = 0.098
Identities = 56/260 (21%), Positives = 108/260 (41%)
Query: 17 RGDKSAKEETSELAKEETSELAKEETSELAKEKTSELAKEETSELAKEKTRELAKEETRE 76
+ + + K E + A+E + + + +E + EE + + K E
Sbjct: 1219 KAEDAKKAEAVKKAEEAKKDAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEAR 1278
Query: 77 LAKEETSELAKEKTRELAKEETSELAKEETSELAKEKTRELAKEETRELAKEETSELAKE 136
A E K+K E K E + A E + + K + AK++ E K+ + K
Sbjct: 1279 KADELKKAEEKKKADEAKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKA 1338
Query: 137 ETRELAKEKTRELAKEKTRELAKEKTRELAKEKTRELAKEETSELAKEETRELAKEETSE 196
E + A E + A+ E + + A EK +E AK++ K+ + +E +
Sbjct: 1339 EEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKK 1398
Query: 197 LAKEETSELAKEETRELAKEETSELAKEKTRELAKEEETRELAKEKTRELAKEKTRELAK 256
A+E+ + + + AK++ E K+ + +E ++ + K + AK+K E K
Sbjct: 1399 KAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKK 1458
Query: 257 EETSELAKEETKKLAKEKTR 276
E ++ EE KK + K +
Sbjct: 1459 AEEAKKKAEEAKKADEAKKK 1478
Score = 34.0 bits (77), Expect = 0.11
Identities = 59/256 (23%), Positives = 106/256 (41%), Gaps = 1/256 (0%)
Query: 23 KEETSELAKEETSELAKEETSELAKEKTSELAKEETSELAKEKTRELAKEETRELAKEET 82
++ E K+ +E + A+E + + + + AK+K E K E + A E
Sbjct: 1469 AKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAK 1528
Query: 83 SELAKEKTRELAKEETSELAKEETSELAKEKTRELAK-EETRELAKEETSELAKEETREL 141
+K E K E + A E +K E K EE ++ +++ L K E +
Sbjct: 1529 KAEEAKKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKK 1588
Query: 142 AKEKTRELAKEKTRELAKEKTRELAKEKTRELAKEETSELAKEETRELAKEETSELAKEE 201
A+E E + E K K E K + ++ EE + +E+ + ++ K++
Sbjct: 1589 AEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKK 1648
Query: 202 TSELAKEETRELAKEETSELAKEKTRELAKEEETRELAKEKTRELAKEKTRELAKEETSE 261
EL K E K E+ ++ A+E + E ++K E K++ E K E +
Sbjct: 1649 AEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELK 1708
Query: 262 LAKEETKKLAKEKTRE 277
+ E KK A+E +
Sbjct: 1709 KKEAEEKKKAEELKKA 1724
Score = 32.4 bits (73), Expect = 0.30
Identities = 58/262 (22%), Positives = 110/262 (41%), Gaps = 3/262 (1%)
Query: 15 EERGDKSAKEETSELAKEETSELAKEETSELAKEKTSELAKEETSELAKEKTRELAKEET 74
++ +AK++ E K + ++ EE + A E A ++ ++ AK+K E K +
Sbjct: 1376 AKKKADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADE 1435
Query: 75 RELAKEETSELAKEKTRELAKEETSELAKEETSELAKEKTRELAKEETRELAKEETSELA 134
+ EE + + K + ++ E K+ +K E K+ +E + A
Sbjct: 1436 AKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEE---AKKADEAKKKAEEAKKADEAKKKA 1492
Query: 135 KEETRELAKEKTRELAKEKTRELAKEKTRELAKEKTRELAKEETSELAKEETRELAKEET 194
+E ++ + K AK+K E K + + A E + ++ E K E ++ A E
Sbjct: 1493 EEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADELK 1552
Query: 195 SELAKEETSELAKEETRELAKEETSELAKEKTRELAKEEETRELAKEKTRELAKEKTREL 254
++ E K E + A+E+ + ++ EE E + E K K E
Sbjct: 1553 KAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEA 1612
Query: 255 AKEETSELAKEETKKLAKEKTR 276
K E +++ EE KK +EK +
Sbjct: 1613 KKAEEAKIKAEELKKAEEEKKK 1634
Score = 31.3 bits (70), Expect = 0.69
Identities = 63/267 (23%), Positives = 116/267 (43%), Gaps = 3/267 (1%)
Query: 19 DKSAKEETSELAKEETSELAKEETSELAKEKTSELAKEETSELAKEKTRELAKEETRELA 78
+ +E + A+E + + + + AK+K E K E ++ A E + ++ E
Sbjct: 1481 EAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAK 1540
Query: 79 KEETSELAKEKTRELAKEETSELAKEETSELAKE-KTRELAKEETRELAKEETSELAKEE 137
K E + A E + ++ E K E ++ A+E K L K E + A+E E +
Sbjct: 1541 KAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKL 1600
Query: 138 TRELAKEKTRELAKEKTRELAKEKTRELAKEKTRELAKEETSELAKEETRELAKEETSEL 197
E K K E K + ++ E+ ++ +EK + ++ K++ EL K E
Sbjct: 1601 YEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENK 1660
Query: 198 AKEETSELAKEETRELAKE--ETSELAKEKTRELAKEEETRELAKEKTRELAKEKTRELA 255
K EE ++ A+E + E K+ L KE E + A+E ++ A+EK +
Sbjct: 1661 IKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEE 1720
Query: 256 KEETSELAKEETKKLAKEKTRELAKEE 282
++ E K + ++ KE + K E
Sbjct: 1721 LKKAEEENKIKAEEAKKEAEEDKKKAE 1747
Score = 31.3 bits (70), Expect = 0.70
Identities = 54/272 (19%), Positives = 112/272 (41%)
Query: 10 ETLQPEERGDKSAKEETSELAKEETSELAKEETSELAKEKTSELAKEETSELAKEKTREL 69
+ L+ K A E + +++ ++ AK++ E K ++ EE + + K +
Sbjct: 1408 DELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAE 1467
Query: 70 AKEETRELAKEETSELAKEKTRELAKEETSELAKEETSELAKEKTRELAKEETRELAKEE 129
++ E K+ ++ ++ A+E + + + + AK+K E K E + A E
Sbjct: 1468 EAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEA 1527
Query: 130 TSELAKEETRELAKEKTRELAKEKTRELAKEKTRELAKEKTRELAKEETSELAKEETREL 189
++ E K + ++ A E + +K E K + + A+E+ + ++
Sbjct: 1528 KKAEEAKKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAK 1587
Query: 190 AKEETSELAKEETSELAKEETRELAKEETSELAKEKTRELAKEEETRELAKEKTRELAKE 249
EE + E K+ E AK+ K + + A+EE+ + +K K+
Sbjct: 1588 KAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKK 1647
Query: 250 KTRELAKEETSELAKEETKKLAKEKTRELAKE 281
K EL K E K + E+ ++ A+E
Sbjct: 1648 KAEELKKAEEENKIKAAEEAKKAEEDKKKAEE 1679
Score = 31.3 bits (70), Expect = 0.80
Identities = 58/260 (22%), Positives = 119/260 (45%), Gaps = 1/260 (0%)
Query: 19 DKSAKEETSELAKEETSELAKEETSELAKEKTSELAKEETSELAKEKTRELAKEETRELA 78
+K +E + A+E+ + + + + AK+K E K+ + ++ ++ A+E +
Sbjct: 1389 EKKKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADE 1448
Query: 79 KEETSELAKEKTRELAKEETSELAKEETSELAKEKTRELAKEETRELAKEETSELAKEET 138
++ +E AK+ K E ++ A E + + K + AK++ E K+ E
Sbjct: 1449 AKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEA 1508
Query: 139 RELAKEKTRELAKEKTRELAKEKTRELAKEKTRELAKEETSELAK-EETRELAKEETSEL 197
++ A E + +K E K + + A E + K++ EL K EE ++ +++ +E
Sbjct: 1509 KKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADELKKAEELKKAEEKKKAEE 1568
Query: 198 AKEETSELAKEETRELAKEETSELAKEKTRELAKEEETRELAKEKTRELAKEKTRELAKE 257
AK+ + + ++ E E+ +L +EE+ + + K E AK K EL K
Sbjct: 1569 AKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKA 1628
Query: 258 ETSELAKEETKKLAKEKTRE 277
E + E+ KK E+ ++
Sbjct: 1629 EEEKKKVEQLKKKEAEEKKK 1648
Score = 31.3 bits (70), Expect = 0.81
Identities = 52/264 (19%), Positives = 122/264 (46%), Gaps = 1/264 (0%)
Query: 15 EERGDKSAKEETSELAKEETSELAKEETSELAKEKTSELAKEETSELAKEKTRELAKEET 74
+ K+ + + + A + +E A +E ++ + K+E ++ + ++ A+E+
Sbjct: 1332 DAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKK 1391
Query: 75 RELAKEETSELAKEKTRELAKEETSELAKEETSELAKEKTR-ELAKEETRELAKEETSEL 133
+ ++ +E K+K EL K ++ +E + A+EK + + AK++ E K + ++
Sbjct: 1392 KADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKK 1451
Query: 134 AKEETRELAKEKTRELAKEKTRELAKEKTRELAKEKTRELAKEETSELAKEETRELAKEE 193
EE ++ + K + +K E K+ ++ ++ A+E + + + AK++
Sbjct: 1452 KAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKK 1511
Query: 194 TSELAKEETSELAKEETRELAKEETSELAKEKTRELAKEEETRELAKEKTRELAKEKTRE 253
E K E ++ A E + ++ E K + ++ A E + E K+ + E+ ++
Sbjct: 1512 ADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKK 1571
Query: 254 LAKEETSELAKEETKKLAKEKTRE 277
+++ L K E K A+E E
Sbjct: 1572 AEEDKNMALRKAEEAKKAEEARIE 1595
Score = 29.7 bits (66), Expect = 1.9
Identities = 55/254 (21%), Positives = 100/254 (39%), Gaps = 5/254 (1%)
Query: 28 ELAKEETSELAKEETSELAKEKTSELAKEETSELAKEKTRELAKEETRELAKEETSELAK 87
+ K E + A++ K + K E + A++ + A + E+ K E A+
Sbjct: 1138 DARKAEEARKAEDAKRVEIARKAEDARKAEEARKAEDAKKAEAARKAEEVRKAEELRKAE 1197
Query: 88 EKTRELAKEETSELAKEETSELAKEKTRELAKEETRELAKEETSELAKEETRELAKEKTR 147
+ + A + E K E + A++ + A ++ E K+ EE R + +
Sbjct: 1198 DARKAEAARKAEEERKAEEARKAEDAKKAEAVKKAEEAKKDAEEAKKAEEERNNEEIRKF 1257
Query: 148 ELAKEKTRELAKEKTRELAKEKTRELAKEETSELAKEETRELAKEETSELAKEETSELAK 207
E A+ + + K EL K E + A E + K++ E K+
Sbjct: 1258 EEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEAKKAEEKKKADEAKKKAEEAKKA 1317
Query: 208 EETRELAKEETSELAKEKTRELAKEEETRELAKEKTRELAKEKTRELAKEETSELAKEET 267
+E ++ A+E AK+K K+ E + A E + A+ E E A E+
Sbjct: 1318 DEAKKKAEE-----AKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKK 1372
Query: 268 KKLAKEKTRELAKE 281
K+ AK+K K+
Sbjct: 1373 KEEAKKKADAAKKK 1386
Score = 29.7 bits (66), Expect = 2.2
Identities = 56/268 (20%), Positives = 106/268 (39%), Gaps = 5/268 (1%)
Query: 10 ETLQPEERGDKSAKEETSELAKEETSELAKEETSELAKEKTSELAKEETSELAKEKTREL 69
E + E+ + + K E + A++ A K E+ K E A++ +
Sbjct: 1144 EARKAEDAKRVEIARKAEDARKAEEARKAEDAKKAEAARKAEEVRKAEELRKAEDARKAE 1203
Query: 70 AKEETRELAKEETSELAKEKTRELAKEETSELAKEETSELAKEKTRELAKEETRELAKEE 129
A + E K E + A++ + A ++ E K+ E+ R + E A+
Sbjct: 1204 AARKAEEERKAEEARKAEDAKKAEAVKKAEEAKKDAEEAKKAEEERNNEEIRKFEEARMA 1263
Query: 130 TSELAKEETRELAKEKTRELAKEKTRELAKEKTRELAKEKTRELAKEETSELAKEETREL 189
+ + K EL K + ++ A E + K+K E K+ +E ++
Sbjct: 1264 HFARRQAAIKAEEARKADELKKAEEKKKADEAKKAEEKKKADEAKKKAEEAKKADEAKKK 1323
Query: 190 AKEETSELAKEETSELAKEETRELAKEETSELAKEKTRELAKEEETRELAKEKTRELAKE 249
A+E AK++ K+ E ++ E + A+ E + A EK +E AK+
Sbjct: 1324 AEE-----AKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKK 1378
Query: 250 KTRELAKEETSELAKEETKKLAKEKTRE 277
K K+ + +E KK A+E ++
Sbjct: 1379 KADAAKKKAEEKKKADEAKKKAEEDKKK 1406
Score = 29.7 bits (66), Expect = 2.4
Identities = 54/268 (20%), Positives = 108/268 (40%), Gaps = 1/268 (0%)
Query: 15 EERGDKSAKEETSELAKEETSELAKEETSELAKEKTSELAKEETSELAKEKTRELAKEET 74
EE + EE + A++ K + K E + A++ R +
Sbjct: 1101 EEAKKTETGKAEEARKAEEAKKKAEDARKAEEARKAEDARKAEEARKAEDAKRVEIARKA 1160
Query: 75 RELAKEETSELAKEKTRELAKEETSELAKEETSELAKEKTRELAKEETRELAKEETSELA 134
+ K E + A++ + A + E+ K E A++ + A + E K E + A
Sbjct: 1161 EDARKAEEARKAEDAKKAEAARKAEEVRKAEELRKAEDARKAEAARKAEEERKAEEARKA 1220
Query: 135 KEETRELAKEKTRELAKEKTRELAKEKTRELAKEKTRELAKEETSELAKEETRELAKEET 194
++ + A +K E K+ E+ R + + E A+ + + +
Sbjct: 1221 EDAKKAEAVKKAEEAKKDAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKA 1280
Query: 195 SELAKEETSELAKEETRELAKEETSELAKEKTRELAKEEETRELAKEKTRELAKEKTREL 254
EL K E + A +E ++ +++ ++ AK+K E K +E ++ A+E ++ K +
Sbjct: 1281 DELKKAEEKKKA-DEAKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAE 1339
Query: 255 AKEETSELAKEETKKLAKEKTRELAKEE 282
++ +E AK E + A E K E
Sbjct: 1340 EAKKAAEAAKAEAEAAADEAEAAEEKAE 1367
Score = 29.7 bits (66), Expect = 2.4
Identities = 53/254 (20%), Positives = 108/254 (42%), Gaps = 2/254 (0%)
Query: 28 ELAKEETSELAKEETSELAKEKTSELAKEETSELAKEKTRELAKEETRELAKEETSELAK 87
K E A+E +K + K E ++ E+ ++ +E E ++
Sbjct: 1204 AARKAEEERKAEEARKAEDAKKAEAVKKAEEAKKDAEEAKKAEEERNNEEIRKFEEARMA 1263
Query: 88 EKTRELAKEETSELAKEETSELAKEKTRELAKEETRELAKEETSELAKEETRELAKEKTR 147
R A + E K + + A+EK + ++ E K + ++ EE ++ + K +
Sbjct: 1264 HFARRQAAIKAEEARKADELKKAEEKKKADEAKKAEEKKKADEAKKKAEEAKKADEAKKK 1323
Query: 148 ELAKEKTRELAKEKTRELAKEKTRELAKEETSELAKEETRELAKEETSELAKEETSELAK 207
+K + AK+K E +K E AK E A E K E +E KEE + A
Sbjct: 1324 AEEAKKKADAAKKKAEE--AKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKAD 1381
Query: 208 EETRELAKEETSELAKEKTRELAKEEETRELAKEKTRELAKEKTRELAKEETSELAKEET 267
++ +++ ++ AK+K E K+ + + A ++ + K + K++ E K+
Sbjct: 1382 AAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAE 1441
Query: 268 KKLAKEKTRELAKE 281
+ ++ ++ A+E
Sbjct: 1442 EAKKADEAKKKAEE 1455
Score = 29.3 bits (65), Expect = 3.2
Identities = 60/256 (23%), Positives = 116/256 (45%), Gaps = 7/256 (2%)
Query: 28 ELAKEETSELAKEETSELAKEKTSELAKEETSELAKEKTRELAKEETRELAKEETSELAK 87
EL K E + A+ + K E K E ++ A+ + ++ E AK+ E
Sbjct: 1192 ELRKAEDARKAEAARKAEEERKAEEARKAEDAKKAEAVKKAEEAKKDAEEAKKAEEERNN 1251
Query: 88 EKTRELAKEETSELAKEETSELAKEKTR--ELAKEETRELAKEETSELAKEETRELAKEK 145
E+ R+ + + A+ + + A+E + EL K E ++ A E K++ E K+
Sbjct: 1252 EEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEAKKAEEKKKADEAKKKA 1311
Query: 146 TRELAKEKTRELAKEKTRELAKEKTRELAKEETSELAKEETRELAKEETSELAKEETSEL 205
++ ++ A+E ++ K + ++ +E AK E A E + K E +E
Sbjct: 1312 EEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEK 1371
Query: 206 AKEETRELAKEETSELAKEKTRELAKEEETRELAKEKTRELAKEKTRELAKEETSELAKE 265
KEE ++ A AK+K E K +E ++ A+E ++ + K AK++ E K+
Sbjct: 1372 KKEEAKKKADA-----AKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKK 1426
Query: 266 ETKKLAKEKTRELAKE 281
+K ++ ++ A+E
Sbjct: 1427 AEEKKKADEAKKKAEE 1442
Score = 29.3 bits (65), Expect = 3.2
Identities = 51/229 (22%), Positives = 98/229 (42%)
Query: 15 EERGDKSAKEETSELAKEETSELAKEETSELAKEKTSELAKEETSELAKEKTRELAKEET 74
+ DK+ +E AK+ +E +EK + + + +E AK K EL K E
Sbjct: 1571 KAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEE 1630
Query: 75 RELAKEETSELAKEKTRELAKEETSELAKEETSELAKEKTRELAKEETRELAKEETSELA 134
+ E+ + E+ ++ + + +E + + +K E K+ EE + A
Sbjct: 1631 EKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKA 1690
Query: 135 KEETRELAKEKTRELAKEKTRELAKEKTRELAKEKTRELAKEETSELAKEETRELAKEET 194
E ++ A+E + +K K+K EL K + K E ++ EE ++ A+E
Sbjct: 1691 AEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAK 1750
Query: 195 SELAKEETSELAKEETRELAKEETSELAKEKTRELAKEEETRELAKEKT 243
+ +++ K+E + A+E E EL +E+E R + +K
Sbjct: 1751 KDEEEKKKIAHLKKEEEKKAEEIRKEKEAVIEEELDEEDEKRRMEVDKK 1799
Score = 29.0 bits (64), Expect = 3.3
Identities = 58/273 (21%), Positives = 119/273 (43%), Gaps = 2/273 (0%)
Query: 10 ETLQPEERGDKSAKEETSELAKEETSELAKEETSELAKEKTSELAKEETSELAKEKTREL 69
E + EE ++ E K + + A+E K+K E K E + + E
Sbjct: 1526 EAKKAEEAKKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEE 1585
Query: 70 AK--EETRELAKEETSELAKEKTRELAKEETSELAKEETSELAKEKTRELAKEETRELAK 127
AK EE R + E K+ E AK+ K E + A+E+ +++ + + +E +
Sbjct: 1586 AKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEE 1645
Query: 128 EETSELAKEETRELAKEKTRELAKEKTRELAKEKTRELAKEKTRELAKEETSELAKEETR 187
++ +E K+ E + E K + + E+ ++ +++ + + ++
Sbjct: 1646 KKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAE 1705
Query: 188 ELAKEETSELAKEETSELAKEETRELAKEETSELAKEKTRELAKEEETRELAKEKTRELA 247
EL K+E E K E + A+EE + A+E E ++K + +++ E K +
Sbjct: 1706 ELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAKKDEEEKKKIAHLKKE 1765
Query: 248 KEKTRELAKEETSELAKEETKKLAKEKTRELAK 280
+EK E ++E + +EE + +++ E+ K
Sbjct: 1766 EEKKAEEIRKEKEAVIEEELDEEDEKRRMEVDK 1798
>gnl|CDD|233191 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger. [Transport and
binding proteins, Cations and iron carrying compounds].
Length = 1096
Score = 37.3 bits (86), Expect = 0.009
Identities = 59/248 (23%), Positives = 96/248 (38%), Gaps = 7/248 (2%)
Query: 6 PSGPETLQPEERGDKSAKEETSELAKEETSELAKEETSELAKEKTSELAKEETSELAKEK 65
P+ E EE G ++ +E +E E SE E +E E+ E E K +
Sbjct: 652 PTEAEGENGEESGGEAEQEGETETKGENESE--GEIPAERKGEQEGEGEIEAKEADHKGE 709
Query: 66 TRELAKEETRELAKEETSELAKEKTRELAKEETSELAKEETSELAKEKTRELAKEETREL 125
T E E E T + + +T E +E E E +E E E ++ET
Sbjct: 710 TEAEEVEHEGETEAEGTEDEGEIETGEEGEEVEDEGEGE--AEGKHEVETEGDRKETEHE 767
Query: 126 AKEETSELAKEETRELAKEKTRELAKEKTRELAKEKTRELAKEKTRELAKEETSELAKEE 185
+ E E+ E+ + E+ ++ E E E E + E SE ++
Sbjct: 768 GETEAEGKEDEDEGEIQAGEDGEMKGDEGAEGKVEHEGE--TEAGEKDEHEGQSETQADD 825
Query: 186 TRELAKEETSELAKEETSELAKEETRELAKEETSELAKEKTRELAKEEETRELAKEKTRE 245
T + EL E E AK++ + + S+ + E +EEE E +E+ E
Sbjct: 826 TEVKDETGEQELNAENQGE-AKQDEKGVDGGGGSDGGDSEEEEEEEEEEEEEEEEEEEEE 884
Query: 246 LAKEKTRE 253
+E+ E
Sbjct: 885 EEEEENEE 892
Score = 35.4 bits (81), Expect = 0.040
Identities = 46/257 (17%), Positives = 90/257 (35%), Gaps = 1/257 (0%)
Query: 13 QPEERGDKSAKEETSELAKEETSELAKEETSELAKEKTSELAKEETSELAKEKTRELAKE 72
+ E G+++ +E E + +E E ++ E E+ E+ E E
Sbjct: 637 EAEHTGERTGEEGERPTEAEGENGEESGGEAEQEGETETKGENESEGEIPAERKGEQEGE 696
Query: 73 ETRELAKEETSELAKEKTRELAKEETSELAKEETSELAKEKTRELAKEETRELAKEETSE 132
E + + + + E E +E ++E E+ E+ E E + E
Sbjct: 697 GEIEAKEADHKGETEAEEVEHEGETEAEGTEDEGEIETGEEGEEVEDEGEGEAEGKHEVE 756
Query: 133 LAKEETRELAKEKTRELAKEKTRELAKEKTRELAKEKTRELAKEETSELAKEETRELAKE 192
+ + +T KE E + + + + E E + E
Sbjct: 757 TEGDRKETEHEGETEAEGKEDEDEGEIQAGEDGEMKGDEGAEGKVEHEGETEAGEKDEHE 816
Query: 193 ETSELAKEETSELAKEETRELAKEETSELAKEKTRELAKEEETRELAKEKTRELAKEKTR 252
SE ++T + +EL E E AK+ + + + E+ E +E+
Sbjct: 817 GQSETQADDTEVKDETGEQELNAENQGE-AKQDEKGVDGGGGSDGGDSEEEEEEEEEEEE 875
Query: 253 ELAKEETSELAKEETKK 269
E +EE E +EE ++
Sbjct: 876 EEEEEEEEEEEEEENEE 892
Score = 32.7 bits (74), Expect = 0.22
Identities = 56/267 (20%), Positives = 95/267 (35%), Gaps = 3/267 (1%)
Query: 17 RGDKSAKEETSELAKEETSELAKEETSELAKEKTSELAKE-ETSELAKEKTRELAKEETR 75
+GD + E T E EE E E E +E E +E ET + ++ E +
Sbjct: 632 KGDVAEAEHTGERTGEE-GERPTEAEGENGEESGGEAEQEGETETKGENESEGEIPAERK 690
Query: 76 ELAKEETSELAKEKTRELAKEETSELAKEETSELAKEKTREL-AKEETRELAKEETSELA 134
+ E AKE + E + ET E E+ EE E+ E E
Sbjct: 691 GEQEGEGEIEAKEADHKGETEAEEVEHEGETEAEGTEDEGEIETGEEGEEVEDEGEGEAE 750
Query: 135 KEETRELAKEKTRELAKEKTRELAKEKTRELAKEKTRELAKEETSELAKEETRELAKEET 194
+ E ++ + +T KE E + + + + E E
Sbjct: 751 GKHEVETEGDRKETEHEGETEAEGKEDEDEGEIQAGEDGEMKGDEGAEGKVEHEGETEAG 810
Query: 195 SELAKEETSELAKEETRELAKEETSELAKEKTRELAKEEETRELAKEKTRELAKEKTREL 254
+ E SE ++T + EL E E ++E+ + ++E+ E
Sbjct: 811 EKDEHEGQSETQADDTEVKDETGEQELNAENQGEAKQDEKGVDGGGGSDGGDSEEEEEEE 870
Query: 255 AKEETSELAKEETKKLAKEKTRELAKE 281
+EE E +EE ++ +E L+ E
Sbjct: 871 EEEEEEEEEEEEEEEEEEENEEPLSLE 897
>gnl|CDD|236081 PRK07735, PRK07735, NADH dehydrogenase subunit C; Validated.
Length = 430
Score = 36.1 bits (83), Expect = 0.018
Identities = 63/217 (29%), Positives = 95/217 (43%), Gaps = 4/217 (1%)
Query: 17 RGDKSAKEETSELAKEETSELAKEETSELAKEKTSELAKEETSELAKEKTR--ELAKEET 74
G + +K E KE+ + T E AK + + AK + + LAK+K E EE
Sbjct: 30 HGAEISKLEEENREKEKALPKNDDMTIEEAKRRAAAAAKAKAAALAKQKREGTEEVTEEE 89
Query: 75 RELAKEETSELAKEKTRELAKEETSELAKEETSELAKEKTRELAKEETRELAKEETSELA 134
+ AK + + AK K LAK++ + E A K + A + + A +
Sbjct: 90 KAKAKAKAAAAAKAKAAALAKQKREGTEEVTEEEKAAAKAKAAAAAKAKAAALAKQKREG 149
Query: 135 KEETRELAKEKTRELAKEKTRELAKEKTRELAKEKTRELAKEETSELAKEETRELAKEET 194
EE E +E +E AK K AK K LAK+K E + E EE + AK +
Sbjct: 150 TEEVTEEEEETDKEKAKAKAAAAAKAKAAALAKQKAAEAGEGT--EEVTEEEKAKAKAKA 207
Query: 195 SELAKEETSELAKEETRELAKEETSELAKEKTRELAK 231
+ AK + + LAK++ + + E AK K AK
Sbjct: 208 AAAAKAKAAALAKQKASQGNGDSGDEDAKAKAIAAAK 244
Score = 35.3 bits (81), Expect = 0.032
Identities = 71/236 (30%), Positives = 102/236 (43%), Gaps = 6/236 (2%)
Query: 48 EKTSELAKEETSELAKEKTRE-LAKEETRELAKEETSELAKEKTRELAKEETSELAKEET 106
EK E K+E + AKE+ R+ L + E++K E KEK + T E AK
Sbjct: 4 EKDLEDLKKEAARRAKEEARKRLVAKHGAEISKLEEENREKEKALPKNDDMTIEEAKRRA 63
Query: 107 SELAKEKTRELA--KEETRELAKEETSELAKEETRELAKEKTRELAKEKTRELAKEKTRE 164
+ AK K LA K E E EE AK + AK K LAK+K + E
Sbjct: 64 AAAAKAKAAALAKQKREGTEEVTEEEKAKAKAKAAAAAKAKAAALAKQKREGTEEVTEEE 123
Query: 165 LAKEKTRELAKEETSELAKEETRELAKEETSELAKEETSELAKEETRELAKEETSELAKE 224
A K + A + A + + EE +E +E E AK + AK + + LAK+
Sbjct: 124 KAAAKAKAAAAAKAKAAALAKQKREGTEEVTEEEEETDKEKAKAKAAAAAKAKAAALAKQ 183
Query: 225 KTRELAKEEETRELAKEKTRELAKEKTRELAKEETSELAKEETKKLAKEKTRELAK 280
K E + E E+ + AK K AK + + LAK++ + + E AK
Sbjct: 184 KAAEAGEGT---EEVTEEEKAKAKAKAAAAAKAKAAALAKQKASQGNGDSGDEDAK 236
Score = 33.4 bits (76), Expect = 0.12
Identities = 72/268 (26%), Positives = 118/268 (44%), Gaps = 9/268 (3%)
Query: 15 EERGDKSAKEETSELAKEETSELAKEETSELAKEKTSELAKEETSELAKEKTRELAKEET 74
+E ++ +E L + +E++K E KEK + T E AK + AK +
Sbjct: 12 KEAARRAKEEARKRLVAKHGAEISKLEEENREKEKALPKNDDMTIEEAKRRAAAAAKAKA 71
Query: 75 RELAKEETSELAKEKTRELAKEETSELAKEETSELAKEKTRELAKEETRELAKEETSELA 134
LAK+ K + E EE AK + + AK K LAK++ + E A
Sbjct: 72 AALAKQ------KREGTEEVTEEEKAKAKAKAAAAAKAKAAALAKQKREGTEEVTEEEKA 125
Query: 135 KEETRELAKEKTRELAKEKTRELAKEKTRELAKEKTRELAKEETSELAKEETRELAKEET 194
+ + A K + A K + E+ E +E +E AK + + AK + LAK++
Sbjct: 126 AAKAKAAAAAKAKAAALAKQKREGTEEVTEEEEETDKEKAKAKAAAAAKAKAAALAKQKA 185
Query: 195 SELAKEETSELAKEETRELAKEETSELAKEKTRELAKEEETRELAKEKTRELAKEKTREL 254
+E + E EE + AK + + AK K LAK++ ++ + E AK K
Sbjct: 186 AEAGEGT--EEVTEEEKAKAKAKAAAAAKAKAAALAKQKASQG-NGDSGDEDAKAKAIAA 242
Query: 255 AKEETSELAKEETKKLAKEKTRELAKEE 282
AK + + A+ +TK +K E +EE
Sbjct: 243 AKAKAAAAARAKTKGAEGKKEEEPKQEE 270
Score = 32.3 bits (73), Expect = 0.29
Identities = 63/235 (26%), Positives = 100/235 (42%), Gaps = 4/235 (1%)
Query: 9 PETLQPEERGDKSAKEETSELAKEETSELAKEETSELAKEK--TSELAKEETSELAKEKT 66
E + +E+ + T E AK + AK + + LAK+K +E EE AK K
Sbjct: 38 EEENREKEKALPKNDDMTIEEAKRRAAAAAKAKAAALAKQKREGTEEVTEEEKAKAKAKA 97
Query: 67 RELAKEETRELAKEETSELAKEKTRELAKEETSELAKEETSELAKEKTRELAKEETRELA 126
AK + LAK++ + E A + A + A K + EE E
Sbjct: 98 AAAAKAKAAALAKQKREGTEEVTEEEKAAAKAKAAAAAKAKAAALAKQKREGTEEVTEEE 157
Query: 127 KEETSELAKEETRELAKEKTRELAKEKTRELAKEKTRELAKEKTRELAKEETSELAKEET 186
+E E AK + AK K LAK+K E + E E+ + AK + + AK +
Sbjct: 158 EETDKEKAKAKAAAAAKAKAAALAKQKAAEAGEGT--EEVTEEEKAKAKAKAAAAAKAKA 215
Query: 187 RELAKEETSELAKEETSELAKEETRELAKEETSELAKEKTRELAKEEETRELAKE 241
LAK++ S+ + E AK + AK + + A+ KT+ ++E +E
Sbjct: 216 AALAKQKASQGNGDSGDEDAKAKAIAAAKAKAAAAARAKTKGAEGKKEEEPKQEE 270
>gnl|CDD|227657 COG5354, COG5354, Uncharacterized protein, contains Trp-Asp (WD)
repeat [General function prediction only].
Length = 561
Score = 36.0 bits (83), Expect = 0.020
Identities = 26/109 (23%), Positives = 42/109 (38%), Gaps = 4/109 (3%)
Query: 103 KEETSELAKEKTRELAKE--ETRELAKEETSELAKEETRELAKEKTRELAKEKTRELAKE 160
E S+L E ++ K ++ A R A K +EL ++ ++
Sbjct: 454 PEPPSKLTIESAKKYVKPSRHRFVPFEKAVIMEADSANRSSAPRK-KELVEQWPEYSDED 512
Query: 161 KTREL-AKEKTRELAKEETSELAKEETRELAKEETSELAKEETSELAKE 208
K R L K + E KE + E ++ K ET E E EL ++
Sbjct: 513 KIRSLLKKLRAIEALKERMRSGEELEVIQVNKIETEEEVLSELKELVED 561
Score = 32.2 bits (73), Expect = 0.31
Identities = 19/91 (20%), Positives = 36/91 (39%), Gaps = 1/91 (1%)
Query: 183 KEETRELAKEETSELAKEETSELAKEETRELAKEETSELAKEKTRELAKEEETRELAKEK 242
++ A A + +EL ++ ++K R L K+ E KE+
Sbjct: 472 SRHRFVPFEKAVIMEADSANRSSAPRK-KELVEQWPEYSDEDKIRSLLKKLRAIEALKER 530
Query: 243 TRELAKEKTRELAKEETSELAKEETKKLAKE 273
R + + ++ K ET E E K+L ++
Sbjct: 531 MRSGEELEVIQVNKIETEEEVLSELKELVED 561
Score = 31.0 bits (70), Expect = 0.79
Identities = 27/116 (23%), Positives = 44/116 (37%), Gaps = 10/116 (8%)
Query: 31 KEETSELAKEETSELAKEK--TSELAKEETSELAKEKTRELAKEETRELAKEETSELAKE 88
E S+L E + K ++ A R A + +EL ++ ++
Sbjct: 454 PEPPSKLTIESAKKYVKPSRHRFVPFEKAVIMEADSANRSSAPRK-KELVEQWPEYSDED 512
Query: 89 KTRELAKEETSELAKEETSELAKEKTRELAKEETRELAKEETSELAKEETRELAKE 144
K R L L K E KE+ R + E ++ K ET E E +EL ++
Sbjct: 513 KIRSL-------LKKLRAIEALKERMRSGEELEVIQVNKIETEEEVLSELKELVED 561
>gnl|CDD|173534 PTZ00341, PTZ00341, Ring-infected erythrocyte surface antigen;
Provisional.
Length = 1136
Score = 34.8 bits (79), Expect = 0.051
Identities = 60/207 (28%), Positives = 85/207 (41%), Gaps = 4/207 (1%)
Query: 24 EETSELAKEETSELAKEETSELAKEKTSELAKEETSELAKEKTRELAKEETRELAKEETS 83
+ +E E E A+ E A+E E A+E E +E E +E E +E
Sbjct: 929 KNQNENVPEHLKEHAEANIEEDAEENVEEDAEENVEENVEENVEENVEENVEENVEENVE 988
Query: 84 ELAKEKTRELAKEETSELAKEETSELAKEKTRELAKEETRELAK--EETSELAKEETREL 141
E +E E +E E +E E +E E +E E+ + EE E EE E
Sbjct: 989 ENVEENVEENVEENIEENVEENVEENIEENVEEYDEENVEEVEENVEEYDEENVEEIEEN 1048
Query: 142 AKEKTRELAKEKTRELAKEKTRELAKEKTRELAKEETSELAKEETRELAKEETSELAKEE 201
A+E E +E E +E E+ E+ E EE E EE E +E E +E
Sbjct: 1049 AEENVEENIEENIEEYDEENVEEI--EENIEENIEENVEENVEENVEEIEENVEENVEEN 1106
Query: 202 TSELAKEETRELAKEETSELAKEKTRE 228
E A+E E A+E E +E E
Sbjct: 1107 AEENAEENAEENAEEYDDENPEEHNEE 1133
Score = 33.6 bits (76), Expect = 0.12
Identities = 59/205 (28%), Positives = 84/205 (40%), Gaps = 4/205 (1%)
Query: 32 EETSELAKEETSELAKEKTSELAKEETSELAKEKTRELAKEETRELAKEETSELAKEKTR 91
+ +E E E A+ E A+E E A+E E +E E +E E +E
Sbjct: 929 KNQNENVPEHLKEHAEANIEEDAEENVEEDAEENVEENVEENVEENVEENVEENVEENVE 988
Query: 92 ELAKEETSELAKEETSELAKEKTRELAKEETRELAKEETSELAK--EETRELAKEKTREL 149
E +E E +E E +E E +E E +E E+ + EE E E+ E
Sbjct: 989 ENVEENVEENVEENIEENVEENVEENIEENVEEYDEENVEEVEENVEEYDEENVEEIEEN 1048
Query: 150 AKEKTRELAKEKTRELAKEKTRELAK--EETSELAKEETRELAKEETSELAKEETSELAK 207
A+E E +E E +E E+ + EE E EE E EE E +E E A+
Sbjct: 1049 AEENVEENIEENIEEYDEENVEEIEENIEENIEENVEENVEENVEEIEENVEENVEENAE 1108
Query: 208 EETRELAKEETSELAKEKTRELAKE 232
E E A+E E E E +E
Sbjct: 1109 ENAEENAEENAEEYDDENPEEHNEE 1133
Score = 29.8 bits (66), Expect = 2.1
Identities = 52/208 (25%), Positives = 81/208 (38%), Gaps = 2/208 (0%)
Query: 72 EETRELAKEETSELAKEKTRELAKEETSELAKEETSELAKEKTRELAKEETRELAKEETS 131
+ E E E A+ E A+E E A+E E +E E +E E +E
Sbjct: 929 KNQNENVPEHLKEHAEANIEEDAEENVEEDAEENVEENVEENVEENVEENVEENVEENVE 988
Query: 132 ELAKEETRELAKEKTRELAKEKTRELAKEKTRELAKEKTRELAK--EETSELAKEETREL 189
E +E E +E E +E E +E E +E E+ + EE E EE E
Sbjct: 989 ENVEENVEENVEENIEENVEENVEENIEENVEEYDEENVEEVEENVEEYDEENVEEIEEN 1048
Query: 190 AKEETSELAKEETSELAKEETRELAKEETSELAKEKTRELAKEEETRELAKEKTRELAKE 249
A+E E +E E +E E+ + + + + + E E E+ E E
Sbjct: 1049 AEENVEENIEENIEEYDEENVEEIEENIEENIEENVEENVEENVEEIEENVEENVEENAE 1108
Query: 250 KTRELAKEETSELAKEETKKLAKEKTRE 277
+ E EE +E +E + E+ E
Sbjct: 1109 ENAEENAEENAEEYDDENPEEHNEEYDE 1136
Score = 27.8 bits (61), Expect = 9.5
Identities = 48/194 (24%), Positives = 76/194 (39%), Gaps = 1/194 (0%)
Query: 88 EKTRELAKEETSELAKEETSELAKEKTRELAKEETRELAKEETSELAKEETRELAKEKTR 147
+ E E E A+ E A+E E A+E E +E E +E E +E
Sbjct: 929 KNQNENVPEHLKEHAEANIEEDAEENVEEDAEENVEENVEENVEENVEENVEENVEENVE 988
Query: 148 ELAKEKTRELAKEKTRELAKEKTRELAKEETSELAKEETRELAKEETSELAKEETSELAK 207
E +E E +E E +E E EE E EE E +E E +E E+ +
Sbjct: 989 ENVEENVEENVEENIEENVEENVEE-NIEENVEEYDEENVEEVEENVEEYDEENVEEIEE 1047
Query: 208 EETRELAKEETSELAKEKTRELAKEEETRELAKEKTRELAKEKTRELAKEETSELAKEET 267
+ + + + + + EE E E+ E E+ E +E E +E
Sbjct: 1048 NAEENVEENIEENIEEYDEENVEEIEENIEENIEENVEENVEENVEEIEENVEENVEENA 1107
Query: 268 KKLAKEKTRELAKE 281
++ A+E E A+E
Sbjct: 1108 EENAEENAEENAEE 1121
>gnl|CDD|237284 PRK13108, PRK13108, prolipoprotein diacylglyceryl transferase;
Reviewed.
Length = 460
Score = 34.6 bits (79), Expect = 0.057
Identities = 27/131 (20%), Positives = 43/131 (32%), Gaps = 4/131 (3%)
Query: 6 PSGPETLQPEERGDKSAKEETSELAKEETSELAKEETSELAKEKTSELAKEETSELAKEK 65
P GP + ++ K E +E+ E +E + + S A EETSE E+
Sbjct: 317 PVGPGEPNQPDDVAEAVKAEVAEVTDEVAAESVVQVADRDGE---STPAVEETSEADIER 373
Query: 66 TRELAKEETRELAKEETSELAKEKTRELAKEETSELAKEETSELAKEKTRELAKEETREL 125
+ A + +E A E A + + E K + EL
Sbjct: 374 EQPGDLAGQAPAAHQVDAEAASAAPEEPAALASEAHDETEPEVPEKAAP-IPDPAKPDEL 432
Query: 126 AKEETSELAKE 136
A + E
Sbjct: 433 AVAGPGDDPAE 443
>gnl|CDD|223095 COG0016, PheS, Phenylalanyl-tRNA synthetase alpha subunit
[Translation, ribosomal structure and biogenesis].
Length = 335
Score = 34.1 bits (79), Expect = 0.057
Identities = 20/90 (22%), Positives = 33/90 (36%), Gaps = 4/90 (4%)
Query: 197 LAKEETSELAKE--ETRELAKEETSELAKEKTRELAKEEETRELAKEKTRELAKEKTREL 254
LAK+ ELA + L + K + L K+ +L K+ + E+ +E+
Sbjct: 1 EVMIALGRLAKKGIAAIELASDLLKALEELKVKYLGKKGVLTDLLKKLGKLSPLEERKEV 60
Query: 255 AKEETSELAKEETKKLAKEKTRELAKEETN 284
K+E + E T EL
Sbjct: 61 GALIN--ELKKEVEDAITELTPELEAAGLW 88
Score = 31.8 bits (73), Expect = 0.31
Identities = 22/94 (23%), Positives = 31/94 (32%), Gaps = 9/94 (9%)
Query: 22 AKEETSELAKE--ETSELAKEETSELAKEKTSELAKEETSELAKEKTRELAKEETR---- 75
LAK+ ELA + L + K L K+ +K +L+ E R
Sbjct: 2 VMIALGRLAKKGIAAIELASDLLKALEELKVKYLGKKGVLTDLLKKLGKLSPLEERKEVG 61
Query: 76 ---ELAKEETSELAKEKTRELAKEETSELAKEET 106
K+E + E T EL E E
Sbjct: 62 ALINELKKEVEDAITELTPELEAAGLWERLAFEK 95
Score = 31.8 bits (73), Expect = 0.35
Identities = 22/92 (23%), Positives = 34/92 (36%), Gaps = 11/92 (11%)
Query: 152 EKTRELAKEKTRELAKEKTRELAKEET-SELAKEETRELAKEETSELAKEETSELAKEET 210
ELA + + L + K + L K+ ++L K+ + EE E+
Sbjct: 14 IAAIELASDLLKALEELKVKYLGKKGVLTDLLKKLGKLSPLEERKEVGAL---------- 63
Query: 211 RELAKEETSELAKEKTRELAKEEETRELAKEK 242
K+E + E T EL LA EK
Sbjct: 64 INELKKEVEDAITELTPELEAAGLWERLAFEK 95
Score = 29.9 bits (68), Expect = 1.7
Identities = 18/78 (23%), Positives = 30/78 (38%), Gaps = 6/78 (7%)
Query: 196 ELAKEETSELAKEETRELAKEETSELAKEKTRELAKEEETRE------LAKEKTRELAKE 249
ELA + L + + + L K+ +K +L+ EE +E K++ + E
Sbjct: 18 ELASDLLKALEELKVKYLGKKGVLTDLLKKLGKLSPLEERKEVGALINELKKEVEDAITE 77
Query: 250 KTRELAKEETSELAKEET 267
T EL E E
Sbjct: 78 LTPELEAAGLWERLAFEK 95
Score = 29.1 bits (66), Expect = 2.5
Identities = 20/79 (25%), Positives = 31/79 (39%), Gaps = 4/79 (5%)
Query: 100 ELAKEETSELAKEKTRELAKEET-RELAKEETSELAKEETRELAKEKTRELAKEKTRELA 158
ELA + L + K + L K+ +L K+ EE +E+ K++ +
Sbjct: 18 ELASDLLKALEELKVKYLGKKGVLTDLLKKLGKLSPLEERKEVGAL--INELKKEVEDAI 75
Query: 159 KEKTRELAKEKT-RELAKE 176
E T EL LA E
Sbjct: 76 TELTPELEAAGLWERLAFE 94
Score = 29.1 bits (66), Expect = 2.5
Identities = 22/79 (27%), Positives = 34/79 (43%), Gaps = 2/79 (2%)
Query: 84 ELAKEKTRELAKEETSELAKEETSELAKEKTRELAKEETRELAKEETSELAKEETRELAK 143
ELA + + L + + L K+ +K +L+ E R+ +EL K+E +
Sbjct: 18 ELASDLLKALEELKVKYLGKKGVLTDLLKKLGKLSPLEERKEVGALINEL-KKEVEDAIT 76
Query: 144 EKTRELAKEKT-RELAKEK 161
E T EL LA EK
Sbjct: 77 ELTPELEAAGLWERLAFEK 95
>gnl|CDD|240271 PTZ00108, PTZ00108, DNA topoisomerase 2-like protein; Provisional.
Length = 1388
Score = 34.3 bits (79), Expect = 0.077
Identities = 30/264 (11%), Positives = 93/264 (35%), Gaps = 4/264 (1%)
Query: 20 KSAKEETSELAKEETSELAKEETSELAKEKTSELAKEETSELAKEKTRELAKEETRELAK 79
+ ++E +L ++ E+ + + + EE +++ + K + +L K
Sbjct: 1112 EKKEKELEKLKNTTPKDMWLEDLDKFEEALEEQEEVEEKEIAKEQRLKSKTKGKASKLRK 1171
Query: 80 EETSELAKEKTRELAKEETSELAKEETSELAKEKTRELAKEETRELAKEETSELAKEETR 139
+ + K+K + A + + + ++ R+L + + + S+ +E +
Sbjct: 1172 PKLKKKEKKKKKSSADKSKKASVVGNSKRVDSDEKRKLDDKPDNKKSNSSGSDQEDDEEQ 1231
Query: 140 ELAKEKTRELAKEKTRELAKEKTRELAKEKTRELAKEETSELAKEETRELAKEETSELAK 199
+ +K+ + + + + + + + + +L+KE + + +K
Sbjct: 1232 KTKPKKSSVKRLKSKKNNSSKSSEDNDEFSSDDLSKEGKP-KNAPKRVSAVQYSPPPPSK 1290
Query: 200 EETSELAKEETRELAKEETSELAKEKTRELAKEEETRELAKEKTRELAKEKTRELAKEET 259
E T + K++ + ++ +++KT K KTR +
Sbjct: 1291 RPDGE---SNGGSKPSSPTKKKVKKRLEGSLAALKKKKKSEKKTARKKKSKTRVKQASAS 1347
Query: 260 SELAKEETKKLAKEKTRELAKEET 283
+ K + +++
Sbjct: 1348 QSSRLLRRPRKKKSDSSSEDDDDS 1371
Score = 28.1 bits (63), Expect = 7.1
Identities = 21/128 (16%), Positives = 50/128 (39%), Gaps = 6/128 (4%)
Query: 157 LAKEKTRELAKEKTRELAKEETSELAKEETRELAKEETSELAKEETSELAKEETRELAKE 216
L KEK +L E E ++E +L +++ E+ + + L ++E E +
Sbjct: 1099 LTKEKVEKLNAE--LEKKEKELEKLKNTTPKDMWLEDLDKFEE----ALEEQEEVEEKEI 1152
Query: 217 ETSELAKEKTRELAKEEETRELAKEKTRELAKEKTRELAKEETSELAKEETKKLAKEKTR 276
+ K KT+ A + +L K++ ++ + + ++ + K +
Sbjct: 1153 AKEQRLKSKTKGKASKLRKPKLKKKEKKKKKSSADKSKKASVVGNSKRVDSDEKRKLDDK 1212
Query: 277 ELAKEETN 284
K+ +
Sbjct: 1213 PDNKKSNS 1220
>gnl|CDD|237952 PRK15362, PRK15362, pathogenicity island 2 effector protein SseC;
Provisional.
Length = 473
Score = 33.6 bits (77), Expect = 0.11
Identities = 46/194 (23%), Positives = 86/194 (44%), Gaps = 7/194 (3%)
Query: 20 KSAKEETSELAKEETSELAKEETSELAKEKTSELAKEETSELAKEKTRELAKEETRELAK 79
K+A++ A EE E + E +E E K+ + +++K+ ELA+E +
Sbjct: 254 KAAEKVLDSGAGEELVERMVGGSEEAIEELAEEFGKQVSEQVSKQVANELAEE-----SA 308
Query: 80 EETSELAKEKTRELAKEETSELAKEETSELAKEKTRELAKEETRELAKEETSELAKEETR 139
E + + K TR L K T E + +E +E ++ +E + L KE T ++ KE +
Sbjct: 309 EFSRNVEKNMTRSLGKAFTKEAIEAMVTEAVEEALKKAVQEGVKFLLKEFTKQVVKEVFK 368
Query: 140 ELAKEKTRELAKEKTRELAKEKTRELAKEKTRELAKEETSELAKEETRELAKEETSELAK 199
++ K R A A T E A + + E ++L K+ + + ++ +
Sbjct: 369 KVIKALIR--ACSFKGLQAIRCTTEGANQINTGMINTEKAKLQKKIEQLILQQRFLDFIM 426
Query: 200 EETSELAKEETREL 213
E+ + K E + L
Sbjct: 427 EQYEKQKKIEQKRL 440
Score = 33.2 bits (76), Expect = 0.14
Identities = 31/99 (31%), Positives = 48/99 (48%), Gaps = 2/99 (2%)
Query: 188 ELAKEETSELAKEETSELAKEETRELAKEETSELAKEKTRELAKE--EETRELAKEKTRE 245
A EE E + E +E E K+ + +++K+ ELA+E E +R + K TR
Sbjct: 262 SGAGEELVERMVGGSEEAIEELAEEFGKQVSEQVSKQVANELAEESAEFSRNVEKNMTRS 321
Query: 246 LAKEKTRELAKEETSELAKEETKKLAKEKTRELAKEETN 284
L K T+E + +E +E KK +E + L KE T
Sbjct: 322 LGKAFTKEAIEAMVTEAVEEALKKAVQEGVKFLLKEFTK 360
Score = 31.3 bits (71), Expect = 0.59
Identities = 31/116 (26%), Positives = 55/116 (47%), Gaps = 5/116 (4%)
Query: 116 ELAKEETRELAKEETSELAKEETRELAKEKTRELAKEKTRELAKEKTRELAKEKTRELAK 175
A EE E + E +E E K+ + +++K+ ELA+E + E +R + K
Sbjct: 262 SGAGEELVERMVGGSEEAIEELAEEFGKQVSEQVSKQVANELAEE-----SAEFSRNVEK 316
Query: 176 EETSELAKEETRELAKEETSELAKEETSELAKEETRELAKEETSELAKEKTRELAK 231
T L K T+E + +E +E + +E + L KE T ++ KE +++ K
Sbjct: 317 NMTRSLGKAFTKEAIEAMVTEAVEEALKKAVQEGVKFLLKEFTKQVVKEVFKKVIK 372
Score = 31.3 bits (71), Expect = 0.63
Identities = 32/112 (28%), Positives = 54/112 (48%), Gaps = 3/112 (2%)
Query: 19 DKSAKEETSELAKEETSELAKEETSELAKEKTSELAKEETSELAKEK---TRELAKEETR 75
D A EE E + E +E E K+ + +++K+ +ELA+E +R + K TR
Sbjct: 261 DSGAGEELVERMVGGSEEAIEELAEEFGKQVSEQVSKQVANELAEESAEFSRNVEKNMTR 320
Query: 76 ELAKEETSELAKEKTRELAKEETSELAKEETSELAKEKTRELAKEETRELAK 127
L K T E + E +E + +E L KE T+++ KE +++ K
Sbjct: 321 SLGKAFTKEAIEAMVTEAVEEALKKAVQEGVKFLLKEFTKQVVKEVFKKVIK 372
>gnl|CDD|227596 COG5271, MDN1, AAA ATPase containing von Willebrand factor type A
(vWA) domain [General function prediction only].
Length = 4600
Score = 33.0 bits (75), Expect = 0.18
Identities = 51/267 (19%), Positives = 112/267 (41%), Gaps = 12/267 (4%)
Query: 24 EETSELAKEETSELAKEETSELAKEKTSELAKEETSELAKEKTRELAKEETRELAKEETS 83
++ ELA EE + + A+E S++ + E ++EE ++L EE +
Sbjct: 3835 DDLEELANEEDTANQSDLDESEARELESDMNGVTKDSVVSENENSDSEEENQDL-DEEVN 3893
Query: 84 ELAKEKTRELAKEETSELAKEETSELAKEKTRELAKEETRELAKEETSELAKEETRELAK 143
++ ++ + L ++ E +E+ E ++ + A +L +E A E+ K
Sbjct: 3894 DIPEDLSNSLNEKLWDEPNEEDLLETEQKSNEQSAANNESDLVSKEDDNKALEDKDRQEK 3953
Query: 144 EKTRELAKEKTRELAKEKTRELAKEKTRELAKEETSELAKEETRELAKEETSELAKEETS 203
E E++ + + E ++ + ++ + E +L ++ + + + S+ + E
Sbjct: 3954 EDEEEMSDDVGID--DEIQPDIQENNSQPPPENEDLDLPEDLKLDEKEGDVSKDSDLEDM 4011
Query: 204 EL-AKEETRELAKEETSELAKEKTRELAKEEET---RELAKEKTRELAK--EKTRELAKE 257
++ A +E +E A E E ++ E EE ++ ++ +LA+ EK E E
Sbjct: 4012 DMEAADENKEEADAEKDEPMQD---EDPLEENNTLDEDIQQDDFSDLAEDDEKMNEDGFE 4068
Query: 258 ETSELAKEETKKLAKEKTRELAKEETN 284
E + +E T+ K E
Sbjct: 4069 ENVQENEESTEDGVKSDEELEQGEVPE 4095
Score = 32.3 bits (73), Expect = 0.32
Identities = 50/293 (17%), Positives = 116/293 (39%), Gaps = 19/293 (6%)
Query: 10 ETLQPEERGDKSAKEETSELAKEETSELAKEETSELAKEKTSELAKEETSELAKEKTREL 69
TL ++ ++ A EE + + A+E S++ + E + ++E+ ++L
Sbjct: 3829 NTLNEDDDLEELANEEDTANQSDLDESEARELESDMNGVTKDSVVSENENSDSEEENQDL 3888
Query: 70 AKEETRELAKEETSELAKEKTRELAKEETSELAKEETSELAKEKTRELAKEETRELAKEE 129
EE ++ ++ ++ L ++ E +E+ E ++ + A +L +E A E+
Sbjct: 3889 -DEEVNDIPEDLSNSLNEKLWDEPNEEDLLETEQKSNEQSAANNESDLVSKEDDNKALED 3947
Query: 130 TSELAKEETRELAK------EKTRELAKEKTRELAKEKTRELAKEKTRELAKEETS---- 179
KE+ E++ E ++ + ++ + + +L ++ + + + S
Sbjct: 3948 KDRQEKEDEEEMSDDVGIDDEIQPDIQENNSQPPPENEDLDLPEDLKLDEKEGDVSKDSD 4007
Query: 180 ------ELAKEETRELAKEETSELAKEETSELAKEETRELAKEETSELAK--EKTRELAK 231
E A E E E+ + E+ E ++ +++ S+LA+ EK E
Sbjct: 4008 LEDMDMEAADENKEEADAEKDEPMQDEDPLEENNTLDEDIQQDDFSDLAEDDEKMNEDGF 4067
Query: 232 EEETRELAKEKTRELAKEKTRELAKEETSELAKEETKKLAKEKTRELAKEETN 284
EE +E + + ++ E + + K AK +E N
Sbjct: 4068 EENVQENEESTEDGVKSDEELEQGEVPEDQAIDNHPKMDAKSTFASAEADEEN 4120
>gnl|CDD|215180 PLN02316, PLN02316, synthase/transferase.
Length = 1036
Score = 32.9 bits (75), Expect = 0.19
Identities = 26/63 (41%), Positives = 32/63 (50%), Gaps = 7/63 (11%)
Query: 221 LAKEKTRE---LAKEEETRELAKEKTRELAKEKTRELAKEETSELAKEETKKLAKEKTRE 277
L +EK RE LAKEE RE E+ R +EK A E AK E +K +EK +
Sbjct: 250 LLEEKRRELEKLAKEEAERERQAEEQRRREEEKA---AMEADRAQAKAEVEK-RREKLQN 305
Query: 278 LAK 280
L K
Sbjct: 306 LLK 308
Score = 31.4 bits (71), Expect = 0.66
Identities = 28/68 (41%), Positives = 33/68 (48%), Gaps = 10/68 (14%)
Query: 109 LAKEKTRELAKEETRELAKEETS-ELAKEETRELAKEKTRELAKEKTRELAKEKTRELAK 167
L +EK REL K LAKEE E EE R +EK A E R AK + E +
Sbjct: 250 LLEEKRRELEK-----LAKEEAERERQAEEQRRREEEKA---AMEADRAQAKAEV-EKRR 300
Query: 168 EKTRELAK 175
EK + L K
Sbjct: 301 EKLQNLLK 308
Score = 29.8 bits (67), Expect = 1.7
Identities = 29/79 (36%), Positives = 37/79 (46%), Gaps = 16/79 (20%)
Query: 85 LAKEKTRELAKEETSELAKEETSELAKEKTRELAKEETRELAKEETSELAKEETRELAKE 144
L +EK REL K LAKEE RE EE R +E+ A E R AK
Sbjct: 250 LLEEKRRELEK-----LAKEEAE-------RERQAEEQRRREEEKA---AMEADRAQAKA 294
Query: 145 KTRELAKEKTRELAKEKTR 163
+ E +EK + L K+ +R
Sbjct: 295 EV-EKRREKLQNLLKKASR 312
Score = 29.1 bits (65), Expect = 3.0
Identities = 21/61 (34%), Positives = 29/61 (47%), Gaps = 6/61 (9%)
Query: 157 LAKEKTRELAKEKTRELAKEETS-ELAKEETRELAKEETSELAKEETSELAKEETRELAK 215
L +EK REL K LAKEE E EE R +E+ + A ++ E+ RE +
Sbjct: 250 LLEEKRRELEK-----LAKEEAERERQAEEQRRREEEKAAMEADRAQAKAEVEKRREKLQ 304
Query: 216 E 216
Sbjct: 305 N 305
Score = 29.1 bits (65), Expect = 3.5
Identities = 27/67 (40%), Positives = 33/67 (49%), Gaps = 8/67 (11%)
Query: 61 LAKEKTRE---LAKEET-RELAKEETSELAKEKTRELAKEETSELAKEETSELAKEKTRE 116
L +EK RE LAKEE RE EE +EK A E AK E E +EK +
Sbjct: 250 LLEEKRRELEKLAKEEAERERQAEEQRRREEEKA---AMEADRAQAKAEV-EKRREKLQN 305
Query: 117 LAKEETR 123
L K+ +R
Sbjct: 306 LLKKASR 312
Score = 27.9 bits (62), Expect = 7.8
Identities = 27/72 (37%), Positives = 36/72 (50%), Gaps = 10/72 (13%)
Query: 141 LAKEKTRELAKEKTRELAKEKT-RELAKEKTRELAKEETSELAKEETRELAKEETSELAK 199
L +EK REL K LAKE+ RE E+ R +E+ A E R AK E E +
Sbjct: 250 LLEEKRRELEK-----LAKEEAERERQAEEQRRREEEKA---AMEADRAQAKAEV-EKRR 300
Query: 200 EETSELAKEETR 211
E+ L K+ +R
Sbjct: 301 EKLQNLLKKASR 312
>gnl|CDD|236545 PRK09510, tolA, cell envelope integrity inner membrane protein
TolA; Provisional.
Length = 387
Score = 32.1 bits (73), Expect = 0.29
Identities = 38/209 (18%), Positives = 92/209 (44%), Gaps = 6/209 (2%)
Query: 57 ETSELAKEKTRELAKEETRELAKEETSELAKEKTRELAKEETSELAKEETSELAKEKTRE 116
+ + ++ R+ ++++ + A+E+ + +++ EL +++ +E + + E + +E
Sbjct: 56 DPGAVVEQYNRQQQQQKSAKRAEEQRKKKEQQQAEELQQKQAAEQERLKQLEKERLAAQE 115
Query: 117 LAKEETRELAKEETSELAKEETRELAKEKTRELAKEKTRELAKEKTRELAKEKTRELAKE 176
K+ EE ++ A + ++ + + A K + A+ K A +K AK+
Sbjct: 116 QKKQ------AEEAAKQAALKQKQAEEAAAKAAAAAKAKAEAEAKRAAAAAKKAAAEAKK 169
Query: 177 ETSELAKEETRELAKEETSELAKEETSELAKEETRELAKEETSELAKEKTRELAKEEETR 236
+ A ++ AK++ A + + AK++ AK++ + AK+K AK +
Sbjct: 170 KAEAEAAKKAAAEAKKKAEAEAAAKAAAEAKKKAEAEAKKKAAAEAKKKAAAEAKAAAAK 229
Query: 237 ELAKEKTRELAKEKTRELAKEETSELAKE 265
A+ K + K ++ A E
Sbjct: 230 AAAEAKAAAEKAAAAKAAEKAAAAKAAAE 258
Score = 32.1 bits (73), Expect = 0.30
Identities = 38/173 (21%), Positives = 76/173 (43%), Gaps = 6/173 (3%)
Query: 12 LQPEERGDKSAKEETSELAKEETSELAKEETSELAKEKTSELAKEETSELAKEKTRELAK 71
Q +++ K A+E+ + +++ EL +++ +E + K E + E K+
Sbjct: 67 QQQQQKSAKRAEEQRKKKEQQQAEELQQKQAAEQERLKQLEKERLAAQEQKKQA------ 120
Query: 72 EETRELAKEETSELAKEKTRELAKEETSELAKEETSELAKEKTRELAKEETRELAKEETS 131
EE + A + + + + A + A+ + + A +K AK++ A ++ +
Sbjct: 121 EEAAKQAALKQKQAEEAAAKAAAAAKAKAEAEAKRAAAAAKKAAAEAKKKAEAEAAKKAA 180
Query: 132 ELAKEETRELAKEKTRELAKEKTRELAKEKTRELAKEKTRELAKEETSELAKE 184
AK++ A K AK+K AK+K AK+K AK ++ A E
Sbjct: 181 AEAKKKAEAEAAAKAAAEAKKKAEAEAKKKAAAEAKKKAAAEAKAAAAKAAAE 233
Score = 31.7 bits (72), Expect = 0.47
Identities = 41/185 (22%), Positives = 80/185 (43%), Gaps = 2/185 (1%)
Query: 15 EERGDKSAKEETSELAKEETSELAKEETSELAKEKTSELAK--EETSELAKEKTRELAKE 72
EE+ K +++ EL +++ +E + + E + E K EE ++ A K ++ +
Sbjct: 78 EEQRKKKEQQQAEELQQKQAAEQERLKQLEKERLAAQEQKKQAEEAAKQAALKQKQAEEA 137
Query: 73 ETRELAKEETSELAKEKTRELAKEETSELAKEETSELAKEKTRELAKEETRELAKEETSE 132
+ A + A+ K A ++ + AK++ A +K AK++ A + +
Sbjct: 138 AAKAAAAAKAKAEAEAKRAAAAAKKAAAEAKKKAEAEAAKKAAAEAKKKAEAEAAAKAAA 197
Query: 133 LAKEETRELAKEKTRELAKEKTRELAKEKTRELAKEKTRELAKEETSELAKEETRELAKE 192
AK++ AK+K AK+K AK + A E K ++ A++ A
Sbjct: 198 EAKKKAEAEAKKKAAAEAKKKAAAEAKAAAAKAAAEAKAAAEKAAAAKAAEKAAAAKAAA 257
Query: 193 ETSEL 197
E +L
Sbjct: 258 EVDDL 262
Score = 30.2 bits (68), Expect = 1.4
Identities = 40/182 (21%), Positives = 74/182 (40%), Gaps = 2/182 (1%)
Query: 100 ELAKEETSELAKEKTRELAKEETRELAKEETSELAKEETRELAKEKTRELAKEKTRELAK 159
E K++ + A+E ++ A E+ R E+ A+E+ ++ + + K+K E A
Sbjct: 79 EQRKKKEQQQAEELQQKQAAEQERLKQLEKERLAAQEQKKQAEEAAKQAALKQKQAEEAA 138
Query: 160 EKTRELAKEKTRELAKEETSELAKEETRELAKEETSELAKEETSELAKEETRELAKEETS 219
K AK K AK + K AK++ A ++ + AK++ A + +
Sbjct: 139 AKAAAAAKAKAEAEAKRAAAAAKKAA--AEAKKKAEAEAAKKAAAEAKKKAEAEAAAKAA 196
Query: 220 ELAKEKTRELAKEEETRELAKEKTRELAKEKTRELAKEETSELAKEETKKLAKEKTRELA 279
AK+K AK++ E K+ E + A+ + + K K + A
Sbjct: 197 AEAKKKAEAEAKKKAAAEAKKKAAAEAKAAAAKAAAEAKAAAEKAAAAKAAEKAAAAKAA 256
Query: 280 KE 281
E
Sbjct: 257 AE 258
Score = 28.6 bits (64), Expect = 4.0
Identities = 35/173 (20%), Positives = 68/173 (39%)
Query: 9 PETLQPEERGDKSAKEETSELAKEETSELAKEETSELAKEKTSELAKEETSELAKEKTRE 68
E Q + + K+ E + + EE ++ A K + + A K +
Sbjct: 90 EELQQKQAAEQERLKQLEKERLAAQEQKKQAEEAAKQAALKQKQAEEAAAKAAAAAKAKA 149
Query: 69 LAKEETRELAKEETSELAKEKTRELAKEETSELAKEETSELAKEKTRELAKEETRELAKE 128
A+ + A ++ + AK+K A ++ + AK++ A K AK++ AK+
Sbjct: 150 EAEAKRAAAAAKKAAAEAKKKAEAEAAKKAAAEAKKKAEAEAAAKAAAEAKKKAEAEAKK 209
Query: 129 ETSELAKEETRELAKEKTRELAKEKTRELAKEKTRELAKEKTRELAKEETSEL 181
+ + AK++ AK + A E K + A++ A E +L
Sbjct: 210 KAAAEAKKKAAAEAKAAAAKAAAEAKAAAEKAAAAKAAEKAAAAKAAAEVDDL 262
Score = 27.8 bits (62), Expect = 7.3
Identities = 39/173 (22%), Positives = 71/173 (41%), Gaps = 4/173 (2%)
Query: 55 KEETSELAKEKTRELAKEETRELAKEETSELAKEKTRELAKEETSELAKEETSELAKEKT 114
KE+ ++ + +E ++L KE + ++K E A ++ + K+ AK
Sbjct: 84 KEQQQAEELQQKQAAEQERLKQLEKERLAAQEQKKQAEEAAKQAALKQKQAEEAAAKAAA 143
Query: 115 RELAKEETRELAKEETSELAKEETRELAKEKTRELAKEKTRELAKEKTRELAKEKTRELA 174
AK E ++ A E AK+K A +K AK+K A K A
Sbjct: 144 AAKAKAEAEAKRAAAAAKKAAAE----AKKKAEAEAAKKAAAEAKKKAEAEAAAKAAAEA 199
Query: 175 KEETSELAKEETRELAKEETSELAKEETSELAKEETRELAKEETSELAKEKTR 227
K++ AK++ AK++ + AK ++ A E K ++ A++
Sbjct: 200 KKKAEAEAKKKAAAEAKKKAAAEAKAAAAKAAAEAKAAAEKAAAAKAAEKAAA 252
>gnl|CDD|240402 PTZ00399, PTZ00399, cysteinyl-tRNA-synthetase; Provisional.
Length = 651
Score = 31.9 bits (73), Expect = 0.39
Identities = 39/162 (24%), Positives = 69/162 (42%), Gaps = 16/162 (9%)
Query: 126 AKEETSELAKEETRELA--KEKTRELAKEKTRELAKEKTRELAKEKTRELAKEETSELAK 183
+ TSE K L +++ R+ AK + + ++ +K ++ + +L E L
Sbjct: 474 GQNSTSENFKPLLEALLRFRDEVRDAAKAEMKLISLDKKKKQLLQLCDKLRDEWLPNLGI 533
Query: 184 EETRELAKEETSELAKEETSELAKEETRELAKEETSELAKEKTRE--LAKEEETRELAKE 241
E + S ++ EL +E+ + A +E L K K +E KE E E AK
Sbjct: 534 R--IEDKPDGPSVWKLDDKEELQREKEEKEALKEQKRLRKLKKQEEKKKKELEKLEKAKI 591
Query: 242 KTRELAKEKTRELAK----------EETSELAKEETKKLAKE 273
E K + + + + E++K+E KKL+KE
Sbjct: 592 PPAEFFKRQEDKYSAFDETGLPTHDADGEEISKKERKKLSKE 633
Score = 30.4 bits (69), Expect = 1.3
Identities = 23/101 (22%), Positives = 44/101 (43%), Gaps = 9/101 (8%)
Query: 183 KEETRELAKEETSELAKEETSELAKEETRELAKEETSELA-----KEKTRELAKEEETRE 237
++E R+ AK E ++ ++ + + +L E L K + K ++ E
Sbjct: 493 RDEVRDAAKAEMKLISLDKKKKQLLQLCDKLRDEWLPNLGIRIEDKPDGPSVWKLDDKEE 552
Query: 238 LAKEKTRELAKEKTRELAKEETSELAKEETKKLAKEKTREL 278
L +EK + A ++ + L K + +EE KK EK +
Sbjct: 553 LQREKEEKEALKEQKRLRKLKK----QEEKKKKELEKLEKA 589
Score = 27.7 bits (62), Expect = 7.8
Identities = 30/146 (20%), Positives = 66/146 (45%), Gaps = 21/146 (14%)
Query: 87 KEKTRELAKEETSELAKEETSELAKEKTRELAKEETREL------AKEETSELAKEETRE 140
+++ R+ AK E ++ ++ + + +L E L + S ++ E
Sbjct: 493 RDEVRDAAKAEMKLISLDKKKKQLLQLCDKLRDEWLPNLGIRIEDKPDGPSVWKLDDKEE 552
Query: 141 LAKEKTRELAKEKTRELAKEKTRELAKEKTRELAKEETSELAKEETRELAKEETSELAK- 199
L +EK + A ++ + L K K +E ++K +EL K E +++ E K + + +
Sbjct: 553 LQREKEEKEALKEQKRLRKLKKQE--EKKKKELEKLEKAKIPPA---EFFKRQEDKYSAF 607
Query: 200 ---------EETSELAKEETRELAKE 216
+ E++K+E ++L+KE
Sbjct: 608 DETGLPTHDADGEEISKKERKKLSKE 633
Score = 27.7 bits (62), Expect = 8.7
Identities = 23/82 (28%), Positives = 39/82 (47%), Gaps = 5/82 (6%)
Query: 60 ELAKEKTRELAKEETRELAKEETSELAKEKTRE---LAKEETSELAKEETSELAK--EKT 114
EL +EK + A +E + L K + E K+K E AK +E K + + + E
Sbjct: 552 ELQREKEEKEALKEQKRLRKLKKQEEKKKKELEKLEKAKIPPAEFFKRQEDKYSAFDETG 611
Query: 115 RELAKEETRELAKEETSELAKE 136
+ E++K+E +L+KE
Sbjct: 612 LPTHDADGEEISKKERKKLSKE 633
>gnl|CDD|237478 PRK13709, PRK13709, conjugal transfer nickase/helicase TraI;
Provisional.
Length = 1747
Score = 32.1 bits (73), Expect = 0.42
Identities = 30/124 (24%), Positives = 52/124 (41%), Gaps = 10/124 (8%)
Query: 128 EETSELAKEETRELAKEKTRELAKEKTRELAKEKTRELAKEKTRELAKEETSELAKEETR 187
E E LA+ + E + +T A E R++A+ K + ++ R
Sbjct: 1633 AGNGEPVTAE--VLAQRQAEEAIRRETERRADEIVRKMAENKP-----DLPDGKTEQAVR 1685
Query: 188 ELAKEETSELAKEETS-ELAKEETRELAKEETSELAKEKTRELAKEEETRELAKEKTREL 246
++A +E A E L + RE +E E +E RE E +++ ++ R+L
Sbjct: 1686 DIAGQERDRAAISEREAALPESVLREPQRE--REAVREVARENLLRERLQQMERDMVRDL 1743
Query: 247 AKEK 250
KEK
Sbjct: 1744 QKEK 1747
Score = 31.3 bits (71), Expect = 0.63
Identities = 22/122 (18%), Positives = 48/122 (39%), Gaps = 1/122 (0%)
Query: 9 PETLQPEE-RGDKSAKEETSELAKEETSELAKEETSELAKEKTSELAKEETSELAKEKTR 67
++QP G+ E ++ EE E ++ K +E + ++ R
Sbjct: 1626 DNSVQPGAGNGEPVTAEVLAQRQAEEAIRRETERRADEIVRKMAENKPDLPDGKTEQAVR 1685
Query: 68 ELAKEETRELAKEETSELAKEKTRELAKEETSELAKEETSELAKEKTRELAKEETRELAK 127
++A +E A E E + E + + L +E+ +++ ++ R+L K
Sbjct: 1686 DIAGQERDRAAISEREAALPESVLREPQREREAVREVARENLLRERLQQMERDMVRDLQK 1745
Query: 128 EE 129
E+
Sbjct: 1746 EK 1747
Score = 30.5 bits (69), Expect = 1.3
Identities = 19/114 (16%), Positives = 41/114 (35%)
Query: 40 EETSELAKEKTSELAKEETSELAKEKTRELAKEETRELAKEETSELAKEKTRELAKEETS 99
+ E ++ EE E+ + + E + ++ R++A +E
Sbjct: 1634 GNGEPVTAEVLAQRQAEEAIRRETERRADEIVRKMAENKPDLPDGKTEQAVRDIAGQERD 1693
Query: 100 ELAKEETSELAKEKTRELAKEETRELAKEETSELAKEETRELAKEKTRELAKEK 153
A E E + E + + L +E +++ ++ R+L KEK
Sbjct: 1694 RAAISEREAALPESVLREPQREREAVREVARENLLRERLQQMERDMVRDLQKEK 1747
Score = 30.1 bits (68), Expect = 1.7
Identities = 25/111 (22%), Positives = 50/111 (45%), Gaps = 4/111 (3%)
Query: 69 LAKEETRELAKEETSELAKEKTRELAKEETSELAKEETSELAKEKTRELAKEE-TRELAK 127
+ E + EE E+ + + +E + ++ R++A +E R
Sbjct: 1639 VTAEVLAQRQAEEAIRRETERRADEIVRKMAENKPDLPDGKTEQAVRDIAGQERDRAAIS 1698
Query: 128 EETSELAKEETRELAKEKTRELAKEKTRE-LAKEKTRELAKEKTRELAKEE 177
E + L + RE +E RE +E RE L +E+ +++ ++ R+L KE+
Sbjct: 1699 EREAALPESVLREPQRE--REAVREVARENLLRERLQQMERDMVRDLQKEK 1747
Score = 28.2 bits (63), Expect = 6.6
Identities = 25/119 (21%), Positives = 46/119 (38%), Gaps = 9/119 (7%)
Query: 120 EETRELAKEETSELAKEETRELAKEKTRELAKEKTRELAKEKTRELAKEKTRELAKEETS 179
E E LA+ + E + +T A E R++A+ K +L KT + ++
Sbjct: 1633 AGNGEPVTAE--VLAQRQAEEAIRRETERRADEIVRKMAENKP-DLPDGKTEQAVRDIAG 1689
Query: 180 ELAKEETRELAKEETSELAKEETSELAKEETRELAKEET-----SELAKEKTRELAKEE 233
+ + E E E RE+A+E ++ ++ R+L KE+
Sbjct: 1690 QERDRAAISEREAALPESVLREPQRER-EAVREVARENLLRERLQQMERDMVRDLQKEK 1747
>gnl|CDD|217393 pfam03154, Atrophin-1, Atrophin-1 family. Atrophin-1 is the
protein product of the dentatorubral-pallidoluysian
atrophy (DRPLA) gene. DRPLA OMIM:125370 is a progressive
neurodegenerative disorder. It is caused by the
expansion of a CAG repeat in the DRPLA gene on
chromosome 12p. This results in an extended
polyglutamine region in atrophin-1, that is thought to
confer toxicity to the protein, possibly through
altering its interactions with other proteins. The
expansion of a CAG repeat is also the underlying defect
in six other neurodegenerative disorders, including
Huntington's disease. One interaction of expanded
polyglutamine repeats that is thought to be pathogenic
is that with the short glutamine repeat in the
transcriptional coactivator CREB binding protein, CBP.
This interaction draws CBP away from its usual nuclear
location to the expanded polyglutamine repeat protein
aggregates that are characteristic of the polyglutamine
neurodegenerative disorders. This interferes with
CBP-mediated transcription and causes cytotoxicity.
Length = 979
Score = 31.6 bits (71), Expect = 0.53
Identities = 24/52 (46%), Positives = 32/52 (61%), Gaps = 5/52 (9%)
Query: 131 SELAKEETRELAKEKTRELAKEKTRELAKEKTRELAKEKTRELAKEETSELA 182
S+LAK+ RE A EK + A++K RE E+ RE KEK RE +E +E A
Sbjct: 575 SKLAKK--REEAVEKAKREAEQKARE---EREREKEKEKEREREREREAERA 621
Score = 31.2 bits (70), Expect = 0.82
Identities = 23/58 (39%), Positives = 33/58 (56%), Gaps = 6/58 (10%)
Query: 203 SELAKEETRELAKEETSELAKEKTRELAKEEETRELAKEKTRELAKEKTRELAKEETS 260
S+LAK+ +EE E AK + + A+EE RE KEK RE +E+ E A + +S
Sbjct: 575 SKLAKK------REEAVEKAKREAEQKAREEREREKEKEKEREREREREAERAAKASS 626
Score = 27.7 bits (61), Expect = 9.5
Identities = 20/47 (42%), Positives = 28/47 (59%), Gaps = 2/47 (4%)
Query: 219 SELAK--EKTRELAKEEETRELAKEKTRELAKEKTRELAKEETSELA 263
S+LAK E+ E AK E ++ +E+ RE KEK RE +E +E A
Sbjct: 575 SKLAKKREEAVEKAKREAEQKAREEREREKEKEKEREREREREAERA 621
>gnl|CDD|235250 PRK04195, PRK04195, replication factor C large subunit;
Provisional.
Length = 482
Score = 31.4 bits (72), Expect = 0.58
Identities = 22/68 (32%), Positives = 32/68 (47%)
Query: 159 KEKTRELAKEKTRELAKEETSELAKEETRELAKEETSELAKEETSELAKEETRELAKEET 218
K K EK RE K+E + A ++ +EE + KEE E +EE E +EE
Sbjct: 411 KIKKIVEKAEKKREEEKKEKKKKAFAGKKKEEEEEEEKEKKEEEKEEEEEEAEEEKEEEE 470
Query: 219 SELAKEKT 226
+ K+ T
Sbjct: 471 EKKKKQAT 478
Score = 29.5 bits (67), Expect = 2.0
Identities = 25/87 (28%), Positives = 44/87 (50%), Gaps = 1/87 (1%)
Query: 28 ELAKEETSELAKEETSELAKEKTSELAKEETSELAKEKTRELAKEETRELAKEETSELAK 87
EL +EE L + + +K E A+++ E KEK ++ A ++ +EE + K
Sbjct: 393 ELTEEEIEFLTGSKKATKKIKKIVEKAEKKREEEKKEKKKK-AFAGKKKEEEEEEEKEKK 451
Query: 88 EKTRELAKEETSELAKEETSELAKEKT 114
E+ +E +EE E +EE + K+ T
Sbjct: 452 EEEKEEEEEEAEEEKEEEEEKKKKQAT 478
Score = 29.5 bits (67), Expect = 2.2
Identities = 21/82 (25%), Positives = 40/82 (48%)
Query: 188 ELAKEETSELAKEETSELAKEETRELAKEETSELAKEKTRELAKEEETRELAKEKTRELA 247
EL +EE L + + ++ E A+++ E KEK ++ ++ E +E+ +
Sbjct: 393 ELTEEEIEFLTGSKKATKKIKKIVEKAEKKREEEKKEKKKKAFAGKKKEEEEEEEKEKKE 452
Query: 248 KEKTRELAKEETSELAKEETKK 269
+EK E + E + +EE KK
Sbjct: 453 EEKEEEEEEAEEEKEEEEEKKK 474
Score = 29.5 bits (67), Expect = 2.4
Identities = 22/77 (28%), Positives = 37/77 (48%), Gaps = 6/77 (7%)
Query: 212 ELAKEETSELAKEKTRE------LAKEEETRELAKEKTRELAKEKTRELAKEETSELAKE 265
EL +EE L K + K E+ RE K++ ++ A ++ +EE + KE
Sbjct: 393 ELTEEEIEFLTGSKKATKKIKKIVEKAEKKREEEKKEKKKKAFAGKKKEEEEEEEKEKKE 452
Query: 266 ETKKLAKEKTRELAKEE 282
E K+ +E+ E +EE
Sbjct: 453 EEKEEEEEEAEEEKEEE 469
Score = 29.1 bits (66), Expect = 3.2
Identities = 20/68 (29%), Positives = 32/68 (47%)
Query: 79 KEETSELAKEKTRELAKEETSELAKEETSELAKEKTRELAKEETRELAKEETSELAKEET 138
K + EK RE K+E + A + +E+ + KEE +E +EE E +EE
Sbjct: 411 KIKKIVEKAEKKREEEKKEKKKKAFAGKKKEEEEEEEKEKKEEEKEEEEEEAEEEKEEEE 470
Query: 139 RELAKEKT 146
+ K+ T
Sbjct: 471 EKKKKQAT 478
Score = 28.3 bits (64), Expect = 5.6
Identities = 18/68 (26%), Positives = 33/68 (48%)
Query: 103 KEETSELAKEKTRELAKEETRELAKEETSELAKEETRELAKEKTRELAKEKTRELAKEKT 162
K + EK RE K+E ++ A + +EE + KE+ +E +E+ E +E+
Sbjct: 411 KIKKIVEKAEKKREEEKKEKKKKAFAGKKKEEEEEEEKEKKEEEKEEEEEEAEEEKEEEE 470
Query: 163 RELAKEKT 170
+ K+ T
Sbjct: 471 EKKKKQAT 478
Score = 28.3 bits (64), Expect = 5.7
Identities = 24/88 (27%), Positives = 43/88 (48%), Gaps = 2/88 (2%)
Query: 44 ELAKEKTSELAKEETSELAKEKTRELAKEETRELAKEETSELAKEKTRELAKEETSELAK 103
EL +E+ L + + +K E A+++ E KE+ + K +E +EE E K
Sbjct: 393 ELTEEEIEFLTGSKKATKKIKKIVEKAEKKREEEKKEKKKKAFAGKKKE--EEEEEEKEK 450
Query: 104 EETSELAKEKTRELAKEETRELAKEETS 131
+E + +E+ E KEE E K++ +
Sbjct: 451 KEEEKEEEEEEAEEEKEEEEEKKKKQAT 478
Score = 28.0 bits (63), Expect = 6.6
Identities = 19/81 (23%), Positives = 40/81 (49%), Gaps = 1/81 (1%)
Query: 92 ELAKEETSELAKEETSELAKEKTRELAKEETRELAKEETSELAKEETRELAKEKTRELAK 151
EL +EE L + + +K E A+++ E K+E + A ++ +E+ + K
Sbjct: 393 ELTEEEIEFLTGSKKATKKIKKIVEKAEKKREE-EKKEKKKKAFAGKKKEEEEEEEKEKK 451
Query: 152 EKTRELAKEKTRELAKEKTRE 172
E+ +E +E+ E +E+ +
Sbjct: 452 EEEKEEEEEEAEEEKEEEEEK 472
Score = 27.6 bits (62), Expect = 9.1
Identities = 22/81 (27%), Positives = 39/81 (48%), Gaps = 1/81 (1%)
Query: 36 ELAKEETSELAKEKTSELAKEETSELAKEKTRELAKEETRELAKEETSELAKEKTRELAK 95
EL +EE L K + ++ E A++K E K+E ++ A + +E+ + K
Sbjct: 393 ELTEEEIEFLTGSKKATKKIKKIVEKAEKKREE-EKKEKKKKAFAGKKKEEEEEEEKEKK 451
Query: 96 EETSELAKEETSELAKEKTRE 116
EE E +EE E +E+ +
Sbjct: 452 EEEKEEEEEEAEEEKEEEEEK 472
>gnl|CDD|131686 TIGR02638, lactal_redase, lactaldehyde reductase. This clade of
genes encoding iron-containing alcohol dehydrogenase
(pfam00465) proteins is generally found in apparent
operons for the catabolism of rhamnose or fucose.
Catabolism of both of these monosaccharides results in
lactaldehyde which is reduced by this enzyme to 1,2
propanediol. This protein is alternatively known by the
name 1,2 propanediol oxidoreductase. This enzyme is
active under anaerobic conditions in E. coli while being
inactivated by reactive oxygen species under aerobic
conditions. Under aerobic conditions the lactaldehyde
product of rhamnose and fucose catabolism is believed to
be oxidized to lactate by a separate enzyme,
lactaldehyde dehydrogenase [Energy metabolism, Sugars].
Length = 379
Score = 30.9 bits (70), Expect = 0.84
Identities = 23/60 (38%), Positives = 28/60 (46%), Gaps = 9/60 (15%)
Query: 232 EEETRELAKEKTRELAKE---KTRELAKEETSELAKEETKKLAK-----EKTRELA-KEE 282
E E EK RE+AK KT ++ EE + A E K L+K E EL KEE
Sbjct: 289 MEFNAEFTGEKYREIAKAMGVKTEGMSDEEARDAAVEAVKTLSKRVGIPEGLSELGVKEE 348
Score = 29.7 bits (67), Expect = 1.8
Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 3/43 (6%)
Query: 152 EKTRELAKEKTRELAKE---KTRELAKEETSELAKEETRELAK 191
E E EK RE+AK KT ++ EE + A E + L+K
Sbjct: 290 EFNAEFTGEKYREIAKAMGVKTEGMSDEEARDAAVEAVKTLSK 332
Score = 28.6 bits (64), Expect = 4.4
Identities = 28/85 (32%), Positives = 35/85 (41%), Gaps = 19/85 (22%)
Query: 60 ELAKEKTRELAKE---ETRELAKEETSELAKEKTRELAK-----EETSELA-KEETSELA 110
E EK RE+AK +T ++ EE + A E + L+K E SEL KEE
Sbjct: 294 EFTGEKYREIAKAMGVKTEGMSDEEARDAAVEAVKTLSKRVGIPEGLSELGVKEEDIPAL 353
Query: 111 KEKT----------RELAKEETREL 125
E RE EE EL
Sbjct: 354 AEAALADVCTGGNPRETTVEEIEEL 378
Score = 27.8 bits (62), Expect = 7.5
Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 3/39 (7%)
Query: 108 ELAKEKTRELAKE---ETRELAKEETSELAKEETRELAK 143
E EK RE+AK +T ++ EE + A E + L+K
Sbjct: 294 EFTGEKYREIAKAMGVKTEGMSDEEARDAAVEAVKTLSK 332
>gnl|CDD|237796 PRK14712, PRK14712, conjugal transfer nickase/helicase TraI;
Provisional.
Length = 1623
Score = 31.0 bits (69), Expect = 0.89
Identities = 32/106 (30%), Positives = 54/106 (50%), Gaps = 5/106 (4%)
Query: 69 LAKEETRELAKEETSELAKEKTRELAKEETSELAKEETSELAKE---KTRELAKEETREL 125
LA+ + E + ET A E R++A E +L +T + +E + R+ A RE
Sbjct: 1515 LAQRQAEEAIRRETERRADEIVRKMA-ENKPDLPDGKTEQAVREIAGQERDRAAITEREA 1573
Query: 126 AKEETSELAKEETRELAKEKTRE-LAKEKTRELAKEKTRELAKEKT 170
A E+ + RE +E RE L +E+ +++ ++ R+L KEKT
Sbjct: 1574 ALPESVLREPQRVREAVREVARENLLQERLQQMERDMVRDLQKEKT 1619
Score = 27.9 bits (61), Expect = 8.5
Identities = 30/111 (27%), Positives = 55/111 (49%), Gaps = 6/111 (5%)
Query: 149 LAKEKTRELAKEKTRELAKEKTRELAKEETSELAKEETRELAKEETSELAKEETSELAKE 208
LA+ + E + +T A E R++A E +L +T + +E +A +E A
Sbjct: 1515 LAQRQAEEAIRRETERRADEIVRKMA-ENKPDLPDGKTEQAVRE----IAGQERDRAAIT 1569
Query: 209 ETRELAKEETSELAKEKTRELAKEEETRELAKEKTRELAKEKTRELAKEET 259
E RE A E+ ++ RE +E L +E+ +++ ++ R+L KE+T
Sbjct: 1570 E-REAALPESVLREPQRVREAVREVARENLLQERLQQMERDMVRDLQKEKT 1619
>gnl|CDD|217756 pfam03839, Sec62, Translocation protein Sec62.
Length = 217
Score = 29.8 bits (67), Expect = 1.2
Identities = 21/71 (29%), Positives = 33/71 (46%)
Query: 206 AKEETRELAKEETSELAKEKTRELAKEEETRELAKEKTRELAKEKTRELAKEETSELAKE 265
AK R L E+ + E+ + +++ A EK + L K + E K+ S+ KE
Sbjct: 9 AKRVVRALESEKYKANKDKGNPEIYNKINSQDKAIEKFKLLIKAQMAERVKKLHSQEKKE 68
Query: 266 ETKKLAKEKTR 276
E KK K+K
Sbjct: 69 EKKKPKKKKVP 79
>gnl|CDD|217337 pfam03050, DDE_Tnp_IS66, Transposase IS66 family. Transposase
proteins are necessary for efficient DNA transposition.
This family includes IS66 from Agrobacterium
tumefaciens.
Length = 277
Score = 29.9 bits (68), Expect = 1.3
Identities = 18/74 (24%), Positives = 29/74 (39%), Gaps = 4/74 (5%)
Query: 211 RELAKEETSELAKEKTRELAK----EEETRELAKEKTRELAKEKTRELAKEETSELAKEE 266
+ K + S A E R + + E E R L E+ L +E +R L + L +
Sbjct: 154 VDAVKSDPSPRAAEALRRIGELYAIEREARGLPPEERLALRQEYSRPLLDALEAWLEAQL 213
Query: 267 TKKLAKEKTRELAK 280
L K K + +
Sbjct: 214 PGVLPKSKLGKAIR 227
>gnl|CDD|234271 TIGR03591, polynuc_phos, polyribonucleotide nucleotidyltransferase.
Members of this protein family are polyribonucleotide
nucleotidyltransferase, also called polynucleotide
phosphorylase. Some members have been shown also to have
additional functions as guanosine pentaphosphate
synthetase and as poly(A) polymerase (see model
TIGR02696 for an exception clade, within this family)
[Transcription, Degradation of RNA].
Length = 684
Score = 30.2 bits (69), Expect = 1.6
Identities = 33/105 (31%), Positives = 47/105 (44%), Gaps = 1/105 (0%)
Query: 132 ELAKEETRELAKEKTRELAKEKTRELAKEKTRELAKEKTRELAKEETSELAKEETRELAK 191
E +E E KEK +A E EL K K +ELA E + A + T + + + K
Sbjct: 208 EAIEELAEEAGKEKWEFVAPEVDEEL-KAKVKELAYEAGLKEAYQITEKQERYAALDAIK 266
Query: 192 EETSELAKEETSELAKEETRELAKEETSELAKEKTRELAKEEETR 236
EE E EE E + + + KE +L K+ RE +E R
Sbjct: 267 EEVLEALAEEEEEEEEADREKEIKEAFKDLEKKIVRERILKEGKR 311
>gnl|CDD|178945 PRK00247, PRK00247, putative inner membrane protein translocase
component YidC; Validated.
Length = 429
Score = 29.4 bits (66), Expect = 2.0
Identities = 24/124 (19%), Positives = 43/124 (34%), Gaps = 7/124 (5%)
Query: 111 KEKTRELAKEETRELAKEETSELAKEETRELAKEKTRELAKEKTRELA-KEKTRELAKEK 169
K L + R + + E E+ K +T E + K R+ +K R +E
Sbjct: 302 KAFLWTLRRNRLRMIITPWRAPELHAENAEIKKTRTAEKNEAKARKKEIAQKRRAAEREI 361
Query: 170 TRELAKEETSELAKEETRELAKEETSELAKEETSE-----LAKEETRELAKEETSELAKE 224
RE A++E + A + + + S EE++ + + E
Sbjct: 362 NRE-ARQERAAAMARARARRAAVKAKKKGLIDASPNEDTPSENEESKGSPPQVEATTTAE 420
Query: 225 KTRE 228
RE
Sbjct: 421 PNRE 424
>gnl|CDD|239472 cd03377, TPP_PFOR_PNO, Thiamine pyrophosphate (TPP family),
PFOR_PNO subfamily, TPP-binding module; composed of
proteins similar to the single subunit pyruvate
ferredoxin oxidoreductase (PFOR) of Desulfovibrio
Africanus, present in bacteria and amitochondriate
eukaryotes. This subfamily also includes proteins
characterized as pyruvate NADP+ oxidoreductase (PNO).
These enzymes are dependent on TPP and a divalent metal
cation as cofactors. PFOR and PNO catalyze the oxidative
decarboxylation of pyruvate to form acetyl-CoA, a
crucial step in many metabolic pathways. Archaea,
anaerobic bacteria and eukaryotes that lack mitochondria
(and therefore pyruvate dehydrogenase) use PFOR to
oxidatively decarboxylate pyruvate, with ferredoxin or
flavodoxin as the electron acceptor. The PFOR from
cyanobacterium Anabaena (NifJ) is required for the
transfer of electrons from pyruvate to flavodoxin, which
reduces nitrogenase. The facultative anaerobic
mitochondrion of the photosynthetic protist Euglena
gracilis oxidizes pyruvate with PNO.
Length = 365
Score = 29.5 bits (67), Expect = 2.3
Identities = 19/68 (27%), Positives = 29/68 (42%), Gaps = 4/68 (5%)
Query: 157 LAKEKTRELAKEKTRELAKEETSELAKEETRELAKEETSELAKEETSELAKEETRELAKE 216
LA ++ RE A+E ++L ++ E K L + E S + + L
Sbjct: 78 LAVDQRRERARELVQKLIEKIGDEELK----TLLNAWLATEDDIEESRERVAKLKPLLAA 133
Query: 217 ETSELAKE 224
E ELAKE
Sbjct: 134 EKDELAKE 141
Score = 28.0 bits (63), Expect = 5.9
Identities = 21/65 (32%), Positives = 30/65 (46%), Gaps = 6/65 (9%)
Query: 85 LAKEKTRELAKEETSELAKEETSELAKEKTRELAK-----EETRELAKEETSELAKEETR 139
LA ++ RE A+E +L ++ E K EE+RE + LA E+
Sbjct: 78 LAVDQRRERARELVQKLIEKIGDEELKTLLNAWLATEDDIEESRERVAKLKPLLAAEKD- 136
Query: 140 ELAKE 144
ELAKE
Sbjct: 137 ELAKE 141
Score = 28.0 bits (63), Expect = 6.1
Identities = 21/65 (32%), Positives = 31/65 (47%), Gaps = 6/65 (9%)
Query: 109 LAKEKTRELAKEETRELAKEETSELAKEETRELAK-----EKTRELAKEKTRELAKEKTR 163
LA ++ RE A+E ++L ++ E K E++RE + LA EK
Sbjct: 78 LAVDQRRERARELVQKLIEKIGDEELKTLLNAWLATEDDIEESRERVAKLKPLLAAEKD- 136
Query: 164 ELAKE 168
ELAKE
Sbjct: 137 ELAKE 141
Score = 27.6 bits (62), Expect = 8.3
Identities = 24/69 (34%), Positives = 34/69 (49%), Gaps = 6/69 (8%)
Query: 141 LAKEKTRELAKEKTRELAKEKTRELAKEKTRE-LAKEETSELAKEETRELAKEETSELAK 199
LA ++ RE A+E ++L ++ E K LA E+ EE+RE + LA
Sbjct: 78 LAVDQRRERARELVQKLIEKIGDEELKTLLNAWLATEDDI----EESRERVAKLKPLLAA 133
Query: 200 EETSELAKE 208
E ELAKE
Sbjct: 134 -EKDELAKE 141
>gnl|CDD|235640 PRK05901, PRK05901, RNA polymerase sigma factor; Provisional.
Length = 509
Score = 29.2 bits (66), Expect = 2.7
Identities = 20/197 (10%), Positives = 68/197 (34%), Gaps = 5/197 (2%)
Query: 20 KSAKEETSELAKEETSELAKEETSELAKEKTSELAKEETSELAKEKTRELAKEETRELAK 79
+ A EE ++ ++ + + + KE+ E + + + + K
Sbjct: 9 ELAAEEEAKKKLKKLAA-KSKSKGFITKEEIKEALESKKKTPEQIDQ---VLIFLSGMVK 64
Query: 80 EETSELAKEKTRELAKEETSELAKEETSELAKEKTRELAKEETRELAKEETSELAKEETR 139
+ + ++ K A + ++ + + +K+ ++ A ++ +L +
Sbjct: 65 DTDDATESDIPKKKTKTAAKAAAAKAPAKKKLKDELDSSKKAEKKNALDKDDDLNYVKDI 124
Query: 140 ELAKEKTRELAKEKTRELAKEKTRELAKEKT-RELAKEETSELAKEETRELAKEETSELA 198
++ + + + +L + + ++ E ++ + EE +E + E
Sbjct: 125 DVLNQADDDDDDDDDDDLDDDDIDDDDDDEDDDEDDDDDDVDDEDEEKKEAKELEKLSDD 184
Query: 199 KEETSELAKEETRELAK 215
+ + E A+
Sbjct: 185 DDFVWDEDDSEALRQAR 201
Score = 28.8 bits (65), Expect = 3.3
Identities = 16/195 (8%), Positives = 63/195 (32%), Gaps = 4/195 (2%)
Query: 20 KSAKEETSELAKEETSELAKEETSELAKEKTSELAKEETSELAKEKTRELAKEETRELAK 79
+ ++ + ++ E+ + S+ E + + K+
Sbjct: 13 EEEAKKKLKKLAAKSKSKGFITKEEIKEALESKKKTPEQIDQVLIFLSGMVKDTDDATES 72
Query: 80 EETSELAKEKTRELAKEETSELAKEETSELAKEKTRELAKEETRELAKEETSELAKEETR 139
+ + K + A + ++ ++ + +K+ ++ A ++ +L + ++ +
Sbjct: 73 DIPKKKTKTAAKAAAAKAPAKKKLKDELDSSKKAEKKNALDKDDDLNYVKDIDVLNQADD 132
Query: 140 ELAKEKTRELAKEKTRELAKEKTRE----LAKEKTRELAKEETSELAKEETRELAKEETS 195
+ + +L + + ++ + + K+E EL K + +
Sbjct: 133 DDDDDDDDDLDDDDIDDDDDDEDDDEDDDDDDVDDEDEEKKEAKELEKLSDDDDFVWDED 192
Query: 196 ELAKEETSELAKEET 210
+ + + T
Sbjct: 193 DSEALRQARKDAKLT 207
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and
chromosome partitioning].
Length = 1163
Score = 29.3 bits (66), Expect = 2.8
Identities = 64/263 (24%), Positives = 97/263 (36%)
Query: 20 KSAKEETSELAKEETSELAKEETSELAKEKTSELAKEETSELAKEKTRELAKEETRELAK 79
KS K E L + E E E+ EL + ++R EE E +
Sbjct: 691 KSLKNELRSLEDLLEELRRQLEELERQLEELKRELAALEEELEQLQSRLEELEEELEELE 750
Query: 80 EETSELAKEKTRELAKEETSELAKEETSELAKEKTRELAKEETRELAKEETSELAKEETR 139
EE EL + + E+ E A + E +E + + EE E A+
Sbjct: 751 EELEELQERLEELEEELESLEEALAKLKEEIEELEEKRQALQEELEELEEELEEAERRLD 810
Query: 140 ELAKEKTRELAKEKTRELAKEKTRELAKEKTRELAKEETSELAKEETRELAKEETSELAK 199
L +E + + E E+ E +E +L + E E+ E KEE EL
Sbjct: 811 ALERELESLEQRRERLEQEIEELEEEIEELEEKLDELEEELEELEKELEELKEELEELEA 870
Query: 200 EETSELAKEETRELAKEETSELAKEKTRELAKEEETRELAKEKTRELAKEKTRELAKEET 259
E+ + + E KEE E +E ELA+ +E E +E+ EL + R +
Sbjct: 871 EKEELEDELKELEEEKEELEEELRELESELAELKEEIEKLRERLEELEAKLERLEVELPE 930
Query: 260 SELAKEETKKLAKEKTRELAKEE 282
E EE + E E E
Sbjct: 931 LEEELEEEYEDTLETELEREIER 953
Score = 27.8 bits (62), Expect = 8.0
Identities = 52/258 (20%), Positives = 87/258 (33%), Gaps = 2/258 (0%)
Query: 15 EERGDKSAKEETSELAKEETSELAKEETSELAKEKTSELAKEETSELAKEKTRELAKEET 74
E + + E+ E K E EL +E + + EE L + E
Sbjct: 257 ELQEELEEAEKEIEELKSELEELREELEELQEELLELKEEIEELEGEISLLRERLEELEN 316
Query: 75 RELAKEETSELAKEKTRELAK--EETSELAKEETSELAKEKTRELAKEETRELAKEETSE 132
EE E KEK L + EE L +E LA+ + + EE EE E
Sbjct: 317 ELEELEERLEELKEKIEALKEELEERETLLEELEQLLAELEEAKEELEEKLSALLEELEE 376
Query: 133 LAKEETRELAKEKTRELAKEKTRELAKEKTRELAKEKTRELAKEETSELAKEETRELAKE 192
L + ELA+ + E K + L + R + E + +E +E
Sbjct: 377 LFEALREELAELEAELAEIRNELEELKREIESLEERLERLSERLEDLKEELKELEAELEE 436
Query: 193 ETSELAKEETSELAKEETRELAKEETSELAKEKTRELAKEEETRELAKEKTRELAKEKTR 252
+EL + EE E ++ EL +E + + + L + +
Sbjct: 437 LQTELEELNEELEELEEQLEELRDRLKELERELAELQEELQRLEKELSSLEARLDRLEAE 496
Query: 253 ELAKEETSELAKEETKKL 270
+ A + + + L
Sbjct: 497 QRASQGVRAVLEALESGL 514
Score = 27.8 bits (62), Expect = 8.9
Identities = 60/264 (22%), Positives = 99/264 (37%)
Query: 19 DKSAKEETSELAKEETSELAKEETSELAKEKTSELAKEETSELAKEKTRELAKEETRELA 78
+ KE ELA+ E EE + K + L + + E EE +
Sbjct: 666 KRELKELEEELAELEAQLEKLEEELKSLKNELRSLEDLLEELRRQLEELERQLEELKREL 725
Query: 79 KEETSELAKEKTRELAKEETSELAKEETSELAKEKTRELAKEETRELAKEETSELAKEET 138
EL + ++R EE E +EE EL + + E+ E A + E +E
Sbjct: 726 AALEEELEQLQSRLEELEEELEELEEELEELQERLEELEEELESLEEALAKLKEEIEELE 785
Query: 139 RELAKEKTRELAKEKTRELAKEKTRELAKEKTRELAKEETSELAKEETRELAKEETSELA 198
+ + E+ E A+ + L +E + E E EE E +E +L
Sbjct: 786 EKRQALQEELEELEEELEEAERRLDALERELESLEQRRERLEQEIEELEEEIEELEEKLD 845
Query: 199 KEETSELAKEETRELAKEETSELAKEKTRELAKEEETRELAKEKTRELAKEKTRELAKEE 258
+ E E+ E KEE EL EK + +E E +E EL + ++ +E
Sbjct: 846 ELEEELEELEKELEELKEELEELEAEKEELEDELKELEEEKEELEEELRELESELAELKE 905
Query: 259 TSELAKEETKKLAKEKTRELAKEE 282
E +E ++L + R +
Sbjct: 906 EIEKLRERLEELEAKLERLEVELP 929
>gnl|CDD|237205 PRK12792, flhA, flagellar biosynthesis protein FlhA; Reviewed.
Length = 694
Score = 29.3 bits (66), Expect = 2.9
Identities = 11/35 (31%), Positives = 17/35 (48%)
Query: 210 TRELAKEETSELAKEKTRELAKEEETRELAKEKTR 244
R A +E AK K E + + E ++ KE+ R
Sbjct: 324 PRRRAARAAAEAAKVKREEESAQAEAKDSVKEQLR 358
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common
bacterial type. SMC (structural maintenance of
chromosomes) proteins bind DNA and act in organizing and
segregating chromosomes for partition. SMC proteins are
found in bacteria, archaea, and eukaryotes. This family
represents the SMC protein of most bacteria. The smc
gene is often associated with scpB (TIGR00281) and scpA
genes, where scp stands for segregation and condensation
protein. SMC was shown (in Caulobacter crescentus) to be
induced early in S phase but present and bound to DNA
throughout the cell cycle [Cellular processes, Cell
division, DNA metabolism, Chromosome-associated
proteins].
Length = 1179
Score = 29.3 bits (66), Expect = 3.1
Identities = 53/241 (21%), Positives = 94/241 (39%), Gaps = 6/241 (2%)
Query: 48 EKTSELAKEETSELAKEKTRELAKEETRELAKEETSELAKEKTRELAKEETSELAKEETS 107
E+ E +E+ +EL K + E E E+ + +E +R+++ E
Sbjct: 683 EEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEV 742
Query: 108 ELAKEKTRELAKEETRELAKEETSELAKEETRELAKEKTRELAKEKTR----ELAKEKTR 163
E +E+ +L+KE T A+ E E EE E E E+ + + + + + R
Sbjct: 743 EQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALR 802
Query: 164 ELAKEKTRELAKEETSELAKEETRELAKEETSELAKE-ETSELAKEETRELAKEETSELA 222
E E EL E E + + + E E EE E + +E+
Sbjct: 803 EALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIE 862
Query: 223 KEKTRELAKEEETRELAKEK-TRELAKEKTRELAKEETSELAKEETKKLAKEKTRELAKE 281
+ + E E L E+ + E A R +E + EL + E+K+ + E +E
Sbjct: 863 ELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELRE 922
Query: 282 E 282
+
Sbjct: 923 K 923
>gnl|CDD|189027 cd09857, PIN_EXO1, PIN domain of Exonuclease-1, a
structure-specific, divalent-metal-ion dependent, 5'
nuclease and homologs. Exonuclease-1 (EXO1) is involved
in multiple, eukaryotic DNA metabolic pathways,
including DNA replication processes (5' flap DNA
endonuclease activity and double stranded DNA
5'-exonuclease activity), DNA repair processes (DNA
mismatch repair (MMR) and post-replication repair
(PRR)), recombination, and telomere integrity. EXO1
functions in the MMS2 error-free branch of the PRR
pathway in the maintenance and repair of stalled
replication forks. Studies also suggest that EXO1 plays
both structural and catalytic roles during MMR-mediated
mutation avoidance. EXO1 belongs to the FEN1-EXO1-like
family of structure-specific, 5' nucleases. These
nucleases contain a PIN (PilT N terminus) domain with a
helical arch/clamp region (I domain) of variable length
(approximately 43 residues in EXO1 PIN domains) and a
H3TH (helix-3-turn-helix) domain, an atypical
helix-hairpin-helix-2-like region. Both the H3TH domain
(not included here) and the helical arch/clamp region
are involved in DNA binding. Nucleases within this group
also have a carboxylate-rich active site that is
involved in binding essential divalent metal ion
cofactors (Mg2+/Mn2+). EXO1 nucleases also have
C-terminal Mlh1- and Msh2-binding domains which allow
interaction with MMR and PRR proteins, respectively.
Length = 210
Score = 28.6 bits (65), Expect = 3.2
Identities = 21/58 (36%), Positives = 28/58 (48%), Gaps = 8/58 (13%)
Query: 126 AKEETSELAKEETRELAKEKTRELAKEKTRELAKEK-------TRELAKEKTRELAKE 176
+K+ T E + E RE EK EL +E R A+E T E+A E + L KE
Sbjct: 84 SKKGT-EEERRERREENLEKALELLREGNRSEARECFQRAVDITPEMAHELIKALRKE 140
>gnl|CDD|237360 PRK13354, PRK13354, tyrosyl-tRNA synthetase; Provisional.
Length = 410
Score = 28.3 bits (64), Expect = 4.4
Identities = 16/60 (26%), Positives = 30/60 (50%)
Query: 221 LAKEKTRELAKEEETRELAKEKTRELAKEKTRELAKEETSELAKEETKKLAKEKTRELAK 280
L+ ++ EL + ET ++ + LA+E T+ + EE +E A++ K L + L
Sbjct: 273 LSPDEIDELEAQLETEPNPRDAKKVLAEEITKFVHGEEAAEEAEKIFKALFSGDVKPLKD 332
Score = 28.3 bits (64), Expect = 4.7
Identities = 19/72 (26%), Positives = 33/72 (45%)
Query: 213 LAKEETSELAKEKTRELAKEEETRELAKEKTRELAKEKTRELAKEETSELAKEETKKLAK 272
L+ +E EL + E + + LA+E T+ + E+ E A++ L + K L
Sbjct: 273 LSPDEIDELEAQLETEPNPRDAKKVLAEEITKFVHGEEAAEEAEKIFKALFSGDVKPLKD 332
Query: 273 EKTRELAKEETN 284
T E++ E N
Sbjct: 333 IPTFEVSAETKN 344
Score = 28.3 bits (64), Expect = 5.1
Identities = 26/101 (25%), Positives = 45/101 (44%), Gaps = 9/101 (8%)
Query: 133 LAKEETRELAKEKTRELAKEKTRELAKEKTRELAKEKTRELAKEETSELAKEETRELAKE 192
L+ +E EL + L E AK + LA+E T+ + EE +E A++ + L
Sbjct: 273 LSPDEIDELEAQ----LETEPNPRDAK---KVLAEEITKFVHGEEAAEEAEKIFKALFSG 325
Query: 193 ETSELAKEETSELAKEETR--ELAKEETSELAKEKTRELAK 231
+ L T E++ E +L + E +K + R L +
Sbjct: 326 DVKPLKDIPTFEVSAETKNLVDLLVDLGLEPSKREARRLIQ 366
>gnl|CDD|114011 pfam05262, Borrelia_P83, Borrelia P83/100 protein. This family
consists of several Borrelia P83/P100 antigen proteins.
Length = 489
Score = 28.4 bits (63), Expect = 4.4
Identities = 25/133 (18%), Positives = 60/133 (45%), Gaps = 2/133 (1%)
Query: 131 SELAKEETRELAKEKTRELAKEKTRELAKEKTRELAKEKTRELAK--EETSELAKEETRE 188
++ KEE + + + K + +K R+ ++K +E + + +E ++
Sbjct: 215 AQQLKEELDKKQIDADKAQQKADFAQDNADKQRDEVRQKQQEAKNLPKPADTSSPKEDKQ 274
Query: 189 LAKEETSELAKEETSELAKEETRELAKEETSELAKEKTRELAKEEETRELAKEKTRELAK 248
+A+ + E+ K + +E AK+ + K++++ KE E +EL +K RE
Sbjct: 275 VAENQKREIEKAQIEIKKNDEEALKAKDHKAFDLKQESKASEKEAEDKELEAQKKREPVA 334
Query: 249 EKTRELAKEETSE 261
E ++ + ++
Sbjct: 335 EDLQKTKPQVEAQ 347
>gnl|CDD|240388 PTZ00372, PTZ00372, endonuclease 4-like protein; Provisional.
Length = 413
Score = 28.5 bits (64), Expect = 4.7
Identities = 21/121 (17%), Positives = 50/121 (41%), Gaps = 5/121 (4%)
Query: 103 KEETSELAKEKTRELAKEETRELAKEETSELAKEETRELAKEKTRELAKEKTRELAKEKT 162
T++ +K + L+KE S ++EE + ++ ++K E K+
Sbjct: 12 FSGTTQKSKLQPISYIYSNVLVLSKEILSTFSEEENKVATTSTKKDKKEDKNNESKKKSE 71
Query: 163 RELAKEKTRELAKEETSELAKEETRELAKEETSELAKEETSELAKEETRELAKEETSELA 222
++ K+K +++ + E + S+ K++ + E + A + +ELA
Sbjct: 72 KKKKKKK-----EKKEPKSEGETKLGFKTPKKSKKTKKKPPKPKPNEDVDNAFNKIAELA 126
Query: 223 K 223
+
Sbjct: 127 E 127
Score = 28.1 bits (63), Expect = 5.4
Identities = 23/110 (20%), Positives = 42/110 (38%), Gaps = 1/110 (0%)
Query: 10 ETLQPEERGDKSAKEETSELAKEETSELAKEETSELAKEKTSELAKEETSELAKEKTREL 69
LQP + + E+ + E K T+ K+K + E + K+K ++
Sbjct: 19 SKLQPISYIYSNVLVLSKEILSTFSEEENKVATTSTKKDKKEDKNNESKKKSEKKKKKKK 78
Query: 70 AKEETRELAKEETSELAKEKTRELAKEETSELAKEETSELAKEKTRELAK 119
K+E + E K + K++ + E + A K ELA+
Sbjct: 79 EKKEPKSE-GETKLGFKTPKKSKKTKKKPPKPKPNEDVDNAFNKIAELAE 127
Score = 27.8 bits (62), Expect = 8.5
Identities = 18/100 (18%), Positives = 36/100 (36%), Gaps = 3/100 (3%)
Query: 79 KEETSELAKEKTRELAKEETSELAKEETSELAKEKTRELAKEETRELAK---EETSELAK 135
L+KE ++EE + ++K E K+ ++ K ++ +
Sbjct: 28 YSNVLVLSKEILSTFSEEENKVATTSTKKDKKEDKNNESKKKSEKKKKKKKEKKEPKSEG 87
Query: 136 EETRELAKEKTRELAKEKTRELAKEKTRELAKEKTRELAK 175
E K + K+K + + + A K ELA+
Sbjct: 88 ETKLGFKTPKKSKKTKKKPPKPKPNEDVDNAFNKIAELAE 127
Score = 27.4 bits (61), Expect = 8.9
Identities = 20/115 (17%), Positives = 44/115 (38%), Gaps = 7/115 (6%)
Query: 47 KEKTSELA--KEETSELAKEKTRELAKEETRELAKEETSELAKEKTRELAKEETSELAKE 104
K K ++ L+KE ++EE + + ++K E K+ + K+
Sbjct: 18 KSKLQPISYIYSNVLVLSKEILSTFSEEENKVATTSTKKDKKEDKNNESKKKSEKKKKKK 77
Query: 105 ETSELAKEKTRELAKEETRELAKEETSELAKEETRELAKEKTRELAKEKTRELAK 159
+ ++K + E + S+ K++ + + + A K ELA+
Sbjct: 78 K-----EKKEPKSEGETKLGFKTPKKSKKTKKKPPKPKPNEDVDNAFNKIAELAE 127
>gnl|CDD|216831 pfam01988, VIT1, VIT family. This family includes the vacuolar
Fe2+/Mn2+ uptake transporter, Ccc1 and the vacuolar iron
transporter VIT1.
Length = 209
Score = 28.0 bits (63), Expect = 5.3
Identities = 21/69 (30%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
Query: 129 ETSELAKEETRELAKEKTRELAKEKTRELAKEKTRELAKEKTRELAKEETSELAKEETRE 188
E +EL +E+ REL + E + A+ + ELA++ REL K++ + E
Sbjct: 63 EEAELEREK-RELENDPEGEREELAEIYRARGLSEELARQVARELMKKDALDAMMREELG 121
Query: 189 LAKEETSEL 197
L E S L
Sbjct: 122 LEPETASPL 130
>gnl|CDD|236138 PRK07994, PRK07994, DNA polymerase III subunits gamma and tau;
Validated.
Length = 647
Score = 28.3 bits (64), Expect = 5.4
Identities = 21/116 (18%), Positives = 35/116 (30%), Gaps = 2/116 (1%)
Query: 6 PSGPETLQPEERGDKSAKEETSELAKEETSELAKEETSELAKEKTSELAKEETSELAKEK 65
P P++ E TS+L + ++ K + + ++ A E+
Sbjct: 399 VPPPPASAPQQAPAVPLPETTSQLLAARQQLQRAQGATKAKKSEPAAASRARPVNSALER 458
Query: 66 TRELAKEETRELAKEETSELA--KEKTRELAKEETSELAKEETSELAKEKTRELAK 119
+ + E K K+E K L EKT ELA
Sbjct: 459 LASVRPAPSALEKAPAKKEAYRWKATNPVEVKKEPVATPKALKKALEHEKTPELAA 514
>gnl|CDD|218734 pfam05758, Ycf1, Ycf1. The chloroplast genomes of most higher
plants contain two giant open reading frames designated
ycf1 and ycf2. Although the function of Ycf1 is unknown,
it is known to be an essential gene.
Length = 832
Score = 28.4 bits (64), Expect = 5.5
Identities = 15/68 (22%), Positives = 31/68 (45%)
Query: 207 KEETRELAKEETSELAKEKTRELAKEEETRELAKEKTRELAKEKTRELAKEETSELAKEE 266
KE + +EE +++ E T E ++ +E + E+ L E+ + K E + +
Sbjct: 227 KETSETEEREEETDVEIETTSETKGTKQEQEGSTEEDPSLFSEEKEDPDKTEDLDKLEIL 286
Query: 267 TKKLAKEK 274
+K +E
Sbjct: 287 KEKKDEEL 294
>gnl|CDD|221121 pfam11489, DUF3210, Protein of unknown function (DUF3210). This is
a family of proteins conserved in yeasts. The function
is not known. The Schizosaccharomyces pombe member is
SPBC18E5.07 and the Saccharomyces cerevisiae member is
AIM21.
Length = 671
Score = 28.4 bits (63), Expect = 6.0
Identities = 37/195 (18%), Positives = 64/195 (32%), Gaps = 1/195 (0%)
Query: 32 EETSELAKEETSELAKEKTSELAKEETSELAKEKTRELAKEETRELAKEETSELAKEKTR 91
E SE ++ E+ ++E + + + T EE L E+ SE+A +
Sbjct: 337 REKSEKSRHESDPKSRENSKPASIYGSVPDLIRHTPLEDVEEYEPLFPEDESEIAVKPPT 396
Query: 92 ELAKEETSELAKEETSELAKEKTRELAKEETRELAKEETSELAKEETRELAKEKTRELA- 150
E + E SE E + ++ A E + + E++
Sbjct: 397 EESSRRPEEEKHRFPSEDVWEDSPSSLQDTATVSTPSNPPPRASETPEQETSRSSSEVSL 456
Query: 151 KEKTRELAKEKTRELAKEKTRELAKEETSELAKEETRELAKEETSELAKEETSELAKEET 210
EL EK + + + + E A E + EET E K + + K
Sbjct: 457 DPHQSELKSEKKKARPEVSKQRFPSRDVWEDAPESQELVTTEETPEEVKSSSPGVTKPAI 516
Query: 211 RELAKEETSELAKEK 225
K+ K K
Sbjct: 517 PSRPKKGKPTSEKRK 531
>gnl|CDD|219655 pfam07946, DUF1682, Protein of unknown function (DUF1682). The
members of this family are all hypothetical eukaryotic
proteins of unknown function. One member is described as
being an adipocyte-specific protein, but no evidence of
this was found.
Length = 322
Score = 28.0 bits (63), Expect = 6.7
Identities = 23/61 (37%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Query: 88 EKTRELAKEETSELAKEETSELAKEKTRELAK-EETRELAKEETSELAKEETRELAKEKT 146
+KTRE +E+ + A+EE E A+EK E K E +LAK E K E +E K+
Sbjct: 262 DKTREEEEEKILKAAEEERQEEAQEKKEEKKKEEREAKLAKLSPEEQRKLEEKERKKQAR 321
Query: 147 R 147
+
Sbjct: 322 K 322
>gnl|CDD|222581 pfam14181, YqfQ, YqfQ-like protein. The YqfQ-like protein family
includes the B. subtilis YqfQ protein, also known as
VrrA, which is functionally uncharacterized. This family
of proteins is found in bacteria. Proteins in this
family are typically between 146 and 237 amino acids in
length. There are two conserved sequence motifs: QYGP
and PKLY.
Length = 155
Score = 27.0 bits (60), Expect = 6.8
Identities = 16/63 (25%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
Query: 17 RGDKSAKEETSELAKEETSELAKEETSELAKEKTSELAKEETSELAKEKTRELAKEETRE 76
R S+ +E E +E T E +E+ E K ++ E K E + EK + + + +
Sbjct: 89 RELSSSDDEEEETEEESTDETEQEDPPE-TKTESKEKKKREVPKPKTEKEKPKTEPKKPK 147
Query: 77 LAK 79
+K
Sbjct: 148 PSK 150
>gnl|CDD|145928 pfam03040, CemA, CemA family. Members of this family are probable
integral membrane proteins. Their molecular function is
unknown. CemA proteins are found in the inner envelope
membrane of chloroplasts but not in the thylakoid
membrane. A cyanobacterial member of this family has
been implicated in CO2 transport, but is probably not a
CO2 transporter itself. They are predicted to be
haem-binding however this has not been proven
experimentally.
Length = 230
Score = 27.5 bits (62), Expect = 6.9
Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 4/51 (7%)
Query: 108 ELAKEKTRELAKEETRELAK--EETSELAKEETRELAKEKTRELAKEKTRE 156
E A EK +E EE EL + +E+ + +E R +K ELAK E
Sbjct: 55 ERALEKLQEF--EELLELDELIKESPPTSLQELRIEIHKKAIELAKIYNEE 103
>gnl|CDD|181309 PRK08230, PRK08230, tartrate dehydratase subunit alpha; Validated.
Length = 299
Score = 27.7 bits (62), Expect = 7.2
Identities = 13/35 (37%), Positives = 17/35 (48%), Gaps = 6/35 (17%)
Query: 248 KEKTRELAKEETSELAKE------ETKKLAKEKTR 276
K +EL ETS LAK E ++LA + R
Sbjct: 30 TAKLKELKDAETSPLAKIIYDTMFENQQLAIDLNR 64
>gnl|CDD|215214 PLN02381, PLN02381, valyl-tRNA synthetase.
Length = 1066
Score = 27.9 bits (62), Expect = 7.3
Identities = 17/71 (23%), Positives = 31/71 (43%)
Query: 212 ELAKEETSELAKEKTRELAKEEETRELAKEKTRELAKEKTRELAKEETSELAKEETKKLA 271
E E+ +E R+ KEE+ +E +K + KE +L ++ S+ K
Sbjct: 5 ESEAEKKILTEEELERKKKKEEKAKEKELKKLKAAQKEAKAKLQAQQASDGTNVPKKSEK 64
Query: 272 KEKTRELAKEE 282
K + R++ E
Sbjct: 65 KSRKRDVEDEN 75
>gnl|CDD|173935 cd08176, LPO, Lactadehyde:propanediol oxidoreductase (LPO)
catalyzes the interconversion between L-lactaldehyde and
L-1,2-propanediol in Escherichia coli and other
enterobacteria. Lactadehyde:propanediol oxidoreductase
(LPO) is a member of the group III iron-activated
dehydrogenases which catalyze the interconversion
between L-lactaldehyde and L-1,2-propanediol in
Escherichia coli and other enterobacteria. L-Fucose and
L-rhamnose is used by Escherichia coli through an
inducible pathway mediated by the fucose regulon
comprising four linked oeprons fucO, fucA, fucPIK, and
fucR. The fucA-encoded aldolase catalyzes the formation
of dihydroxyacetone phosphate and L-lactaldehyde. Under
anaerobic conditions, with NADH as a cofactor,
lactaldehyde is converted by a fucO-encoded
Lactadehyde:propanediol oxidoreductase (LPO) to
L-1,2-propanediol, which is excreted as a fermentation
product. In mutant strains, E. coli adapted to grow on
L-1,2-propanediol, FucO catalyzes the oxidation of the
polyol to L-lactaldehyde. FucO is induced regardless of
the respiratory conditions of the culture, remains fully
active in the absence of oxygen. In the presence of
oxygen, this enzyme becomes oxidatively inactivated by a
metal-catalyzed oxidation mechanism. FucO is an
iron-dependent metalloenzyme that is inactivated by
other metals, such as zinc, copper, or cadmium. This
enzyme can also reduces glycol aldehyde with similar
efficiency. Beside L-1,2-propanediol, the enzyme is
also able to oxidize methanol as alternative substrates.
Length = 377
Score = 27.6 bits (62), Expect = 7.5
Identities = 11/44 (25%), Positives = 23/44 (52%), Gaps = 3/44 (6%)
Query: 104 EETSELAKEKTRELAK---EETRELAKEETSELAKEETRELAKE 144
E + E+ ++A+ +T L+ EE +E A + R L+++
Sbjct: 287 EYNAPACPERFADIAEAMGVDTEGLSDEEAAEAAIDAVRALSED 330
>gnl|CDD|234750 PRK00409, PRK00409, recombination and DNA strand exchange inhibitor
protein; Reviewed.
Length = 782
Score = 27.9 bits (63), Expect = 8.6
Identities = 34/124 (27%), Positives = 54/124 (43%), Gaps = 10/124 (8%)
Query: 126 AKEETSELAKEETRELAKEKTRELAKEKTRELAKEKTRELAKEKTRELAKEETSELAKEE 185
A E E E+ E A+ +E EK +E +EK +L ++ + EE + A++
Sbjct: 523 ASLEELERELEQKAEEAEALLKEA--EKLKEELEEKKEKL--QEEEDKLLEEAEKEAQQA 578
Query: 186 TRELAKEETSELAKEETSELAKEETRELAKEETSELAKEKTRELAKEEETRELAKEKTRE 245
+E AK+E E+ KE A E E + L K E +E K+K +E
Sbjct: 579 IKE-AKKEADEIIKELRQLQKGGYASVKAHE-----LIEARKRLNKANEKKEKKKKKQKE 632
Query: 246 LAKE 249
+E
Sbjct: 633 KQEE 636
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.286 0.108 0.242
Gapped
Lambda K H
0.267 0.0677 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 13,359,510
Number of extensions: 1366423
Number of successful extensions: 12064
Number of sequences better than 10.0: 1
Number of HSP's gapped: 5546
Number of HSP's successfully gapped: 2137
Length of query: 284
Length of database: 10,937,602
Length adjustment: 96
Effective length of query: 188
Effective length of database: 6,679,618
Effective search space: 1255768184
Effective search space used: 1255768184
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 17 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 45 (21.8 bits)
S2: 58 (26.2 bits)