RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy16914
(284 letters)
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp
contractIle protein-transport protein complex; 24.00A
{Gallus gallus}
Length = 1080
Score = 60.9 bits (148), Expect = 1e-10
Identities = 40/257 (15%), Positives = 94/257 (36%), Gaps = 9/257 (3%)
Query: 17 RGDKSAKEETSELAKEETSELAKEETSELAKEKTSELAKEETSELAKEKTRELAKEETRE 76
+ + ++ T L L + + + +E S + ++ +
Sbjct: 833 KRYQCMRDATIALQALLRGYLVRNKYQMMLREHKSIIIQKHVRGWLARVHYHRTLKAIVY 892
Query: 77 LAKEETSELAKEKTRELAKEETSELAKEETSELAKEKTRELAKEETRELAKEETSELAKE 136
L +AK + ++L E S ++ + K +L + + +E L E
Sbjct: 893 LQCCYRRMMAKRELKKLKIEARSVERYKKLHIGLENKIMQL--QRKIDEQNKEYKSL-LE 949
Query: 137 ETRELAKEKTRELAKEKTRELAKEKTRELAKEKTRELAKEETSELAKEETRELAKEETSE 196
+ L + E K ++ + E AK T + + EE +L KE
Sbjct: 950 KMNNLEITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQ------EEIAKLRKELHQT 1003
Query: 197 LAKEETSELAKEETRELAKEETSELAKEKTRELAKEEETRELAKEKTRELAKEKTRELAK 256
+++T E ++ + ++ SEL ++ T ++EE ++ +E+ + ++L +
Sbjct: 1004 QTEKKTIEEWADKYKHETEQLVSELKEQNTLLKTEKEELNRRIHDQAKEITETMEKKLVE 1063
Query: 257 EETSELAKEETKKLAKE 273
E ++L +
Sbjct: 1064 ETKQLELDLNDERLRYQ 1080
Score = 60.5 bits (147), Expect = 2e-10
Identities = 31/228 (13%), Positives = 78/228 (34%), Gaps = 1/228 (0%)
Query: 47 KEKTSELAKEETSELAKEKTRELAKEETRELAKEETSELAKEKTRELAKEETSELAKEET 106
++ T L L + K + + +E + ++ + L
Sbjct: 839 RDATIALQALLRGYLVRNKYQMMLREHKSIIIQKHVRGWLARVHYHRTLKAIVYLQCCYR 898
Query: 107 SELAKEKTRELAKEETRELAKEETSELAKEETRELAKEKTRELAKEKTRELAKEKTRELA 166
+AK + ++L E ++ + + +L ++ + + K+
Sbjct: 899 RMMAKRELKKLKIEARSVERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITY 958
Query: 167 KEKTRELAKEETSELAKEETRELAKEETSELAKEETSELAKEETRELAKEETSELAKEKT 226
+T +L + L E +EE ++L KE + +++T E +K
Sbjct: 959 STETEKLRSDV-ERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKY 1017
Query: 227 RELAKEEETRELAKEKTRELAKEKTRELAKEETSELAKEETKKLAKEK 274
+ ++ + + + KE+ ++ E+ + KKL +E
Sbjct: 1018 KHETEQLVSELKEQNTLLKTEKEELNRRIHDQAKEITETMEKKLVEET 1065
Score = 54.7 bits (132), Expect = 1e-08
Identities = 36/225 (16%), Positives = 74/225 (32%), Gaps = 7/225 (3%)
Query: 65 KTRELAKEETRELAKEETSELAKEKTRELAKEETSELAKEETSELAKEKTRELAKEETRE 124
K + ++ T L L + K + + +E S + ++ +
Sbjct: 833 KRYQCMRDATIALQALLRGYLVRNKYQMMLREHKSIIIQKHVRGWLARVHYHRTLKAIVY 892
Query: 125 LAKEETSELAKEETRELAKEKTRELAKEKTRELAKEKTREL-------AKEKTRELAKEE 177
L +AK E ++L E +K + K +L KE L K
Sbjct: 893 LQCCYRRMMAKRELKKLKIEARSVERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMN 952
Query: 178 TSELAKEETRELAKEETSELAKEETSELAKEETRELAKEETSELAKEKTRELAKEEETRE 237
E+ E + + L E +EE ++L KE + +++ E
Sbjct: 953 NLEITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEE 1012
Query: 238 LAKEKTRELAKEKTRELAKEETSELAKEETKKLAKEKTRELAKEE 282
A + E + + + + KEE + ++ +E+ +
Sbjct: 1013 WADKYKHETEQLVSELKEQNTLLKTEKEELNRRIHDQAKEITETM 1057
Score = 45.9 bits (109), Expect = 9e-06
Identities = 32/217 (14%), Positives = 79/217 (36%), Gaps = 4/217 (1%)
Query: 69 LAKEETRELAKEETSELAKEKTRELAKEETSELAKEETSELAKEKTRELAKEETRELAKE 128
A+ L + + + ++ R + + ++ T L L + + + + +E
Sbjct: 805 QARCYATFLRRTRAAIIIQKFQRMYVVRKRYQCMRDATIALQALLRGYLVRNKYQMMLRE 864
Query: 129 ETSELAKEETRELAKEKTRELAKEKTRELAKEKTRELAKEKTRELAKEETSELAKEETRE 188
S + ++ R + L R +AK + ++L E S ++
Sbjct: 865 HKSIIIQKHVRGWLARVHYHRTLKAIVYLQCCYRRMMAKRELKKLKIEARSVERYKKLHI 924
Query: 189 LAKEETSELAK--EETSELAKEETRELAKEETSELAKEKTRELAKEEETRELAKEKTREL 246
+ + +L + +E ++ K ++ E + E + + E R +E
Sbjct: 925 GLENKIMQLQRKIDEQNKEYKSLLEKMNNLE-ITYSTETEKLRSDVERLRMSEEEAKNAT 983
Query: 247 AKEKT-RELAKEETSELAKEETKKLAKEKTRELAKEE 282
+ + +E + EL + +T+K E+ + K E
Sbjct: 984 NRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHE 1020
Score = 37.0 bits (86), Expect = 0.007
Identities = 25/154 (16%), Positives = 52/154 (33%), Gaps = 2/154 (1%)
Query: 131 SELAKEETRELAKEKTRELAKEKTRELAKEKTRELAKEKTRELAKEETSELAKEETRELA 190
+ ++ + + A + + + L + K+ + K LA+
Sbjct: 828 MYVVRKRYQCMRDATIALQALLRGYLVRNKYQMMLREHKSIIIQKHVRGWLARVHYHRTL 887
Query: 191 KEETSELAKEETSELAKEETRELAKEETSELAKEKTRELAKEEETRELAKEKTRELAKEK 250
K L +AK E ++L K E + + K + E + +L ++ + + K
Sbjct: 888 KAIV-YLQCCYRRMMAKRELKKL-KIEARSVERYKKLHIGLENKIMQLQRKIDEQNKEYK 945
Query: 251 TRELAKEETSELAKEETKKLAKEKTRELAKEETN 284
+ ET+KL + R EE
Sbjct: 946 SLLEKMNNLEITYSTETEKLRSDVERLRMSEEEA 979
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment
2, heavy meromyosin, essential light chain, motor
protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1
PDB: 3j04_A 3dtp_B 3dtp_A
Length = 1184
Score = 57.2 bits (138), Expect = 2e-09
Identities = 51/266 (19%), Positives = 97/266 (36%), Gaps = 3/266 (1%)
Query: 15 EERGDKSAKEETSELAKEETSELAKEETSELAKEKTSELAKEETSELAKEKTRELAKEET 74
E + K+E E+ E + + +E+ + + +++ +L ++
Sbjct: 906 ELYAEAEEMRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLE 965
Query: 75 RELAKEETSELAKEKTRELAKEETSELAKEETSELAKEKTRELAKEETRELAKEETSELA 134
E A + +L K K+ ++ E K R+L +E +L E
Sbjct: 966 EEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEE 1025
Query: 135 KEETRELAKEKTRELAKEKTRELAKEKTRELAKEKTRELAKEETSELAK---EETRELAK 191
K + K K + E L KE+ EK + + E+S+L + E ++A+
Sbjct: 1026 KAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAE 1085
Query: 192 EETSELAKEETSELAKEETRELAKEETSELAKEKTRELAKEEETRELAKEKTRELAKEKT 251
+ KEE + A + ++ + L K + E + +L EK EK
Sbjct: 1086 LKAQLAKKEEELQAALARLEDETSQKNNALKKIRELESHISDLQEDLESEKAARNKAEKQ 1145
Query: 252 RELAKEETSELAKEETKKLAKEKTRE 277
+ EE L E L T++
Sbjct: 1146 KRDLSEELEALKTELEDTLDTTATQQ 1171
Score = 54.8 bits (132), Expect = 1e-08
Identities = 43/256 (16%), Positives = 95/256 (37%), Gaps = 2/256 (0%)
Query: 20 KSAKEETSELAKEETSELAKEETSELAKEKTSELAKEETSELAKEKTRELAKEETRELAK 79
+ E + + +EE + + +++ +L ++ E A + +L K K
Sbjct: 927 EILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIK 986
Query: 80 EETSELAKEKTRELAKEETSELAKEETSELAKEKTRELAKEETRELAKEETSELAKEETR 139
+ ++ + + + +L +E S+L E K + K + + E
Sbjct: 987 KMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEV 1046
Query: 140 ELAKE-KTRELAKEKTRELAKEKTRELAKEKTRELAKEETSELAKEETRELAKEETSELA 198
L KE K+R+ ++ R+L E + + + E ++ EL
Sbjct: 1047 RLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELKAQLAKKEEELQAALARLED 1106
Query: 199 KEETSELAKEETRELAKEETSELAKEKTRELAKEEETRELAKEKTRELAKEKTRELAKEE 258
+ A ++ REL + S+L ++ E A + + ++ + EL KT +
Sbjct: 1107 ETSQKNNALKKIREL-ESHISDLQEDLESEKAARNKAEKQKRDLSEELEALKTELEDTLD 1165
Query: 259 TSELAKEETKKLAKEK 274
T+ +E K+
Sbjct: 1166 TTATQQELRGSDYKDD 1181
Score = 52.5 bits (126), Expect = 6e-08
Identities = 46/243 (18%), Positives = 95/243 (39%), Gaps = 2/243 (0%)
Query: 39 KEETSELAKEKTSELAKEETSELAKEKTRELAKEETRELAKEETSELAKEKTRELAKEET 98
K++ E+ E + + +E+ R + ++ +++ +L ++ E A +
Sbjct: 914 MRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQK 973
Query: 99 SELAKEETSELAKEKTRELAKEETRELAKEETSELAKEETRELAKEKTRELAKEKTRELA 158
+L K K+ ++ E + + +L +E +L E K K
Sbjct: 974 LQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKL 1033
Query: 159 KEKTRELAKEKTRELAKEETSELAKEETRELAKEETSELAKE-ETSELAKEETRELAKEE 217
K K + E L KEE S E+ + + E+S+L ++ + E + ++
Sbjct: 1034 KNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELKAQLAKK 1093
Query: 218 TSELAKEKTRELAKEEETRELAKEKTRELAKEKTRELAKEETSELAKEETKKLAKEKTRE 277
EL R L E + A +K REL + E+ + A+ + +K ++ + E
Sbjct: 1094 EEELQAALAR-LEDETSQKNNALKKIRELESHISDLQEDLESEKAARNKAEKQKRDLSEE 1152
Query: 278 LAK 280
L
Sbjct: 1153 LEA 1155
Score = 50.6 bits (121), Expect = 3e-07
Identities = 43/248 (17%), Positives = 93/248 (37%), Gaps = 11/248 (4%)
Query: 44 ELAKEKTSELAKEETSELAKEKTRELAKEETRELAKEETSELAKEKTRELAKEETSELAK 103
E+ + +E + A+ + +EL ++ T+ ++ + + EL E +
Sbjct: 858 EMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAEEMRVR 917
Query: 104 EETSELAKEKTRELAKEETRELAKEETSELAKEETRELAKEKTRELAKEKTRELAKEKTR 163
K++ E+ E + +EE + ++ +++ +L ++ E A +
Sbjct: 918 LAA---KKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKL 974
Query: 164 ELAKEKTRELAKEETSELAKEET--------RELAKEETSELAKEETSELAKEETRELAK 215
+L K K+ ++ E R+L +E S+L E K + K
Sbjct: 975 QLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLK 1034
Query: 216 EETSELAKEKTRELAKEEETRELAKEKTRELAKEKTRELAKEETSELAKEETKKLAKEKT 275
+ + E L KEE++R+ ++ R+L E + + + E K +K
Sbjct: 1035 NKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELKAQLAKKE 1094
Query: 276 RELAKEET 283
EL
Sbjct: 1095 EELQAALA 1102
Score = 49.1 bits (117), Expect = 9e-07
Identities = 56/278 (20%), Positives = 106/278 (38%), Gaps = 9/278 (3%)
Query: 10 ETLQPEERGDKSAKEETSELAKEETSELAKEETSELAKEKTSELAKEETSELAKEKTREL 69
+ Q + + E+ EE + L ++ +E +E + + +E L
Sbjct: 870 KERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAEEMRVRLAAKKQELEEIL 929
Query: 70 AKEETR-ELAKEETSEL--AKEKTRELAKEETSELAKEETSELAKEKTRELAKEETRELA 126
+ E R E +E + +L K+K ++ + +L +EE A + +L K
Sbjct: 930 HEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEE----AARQKLQLEKVTADGKI 985
Query: 127 KEETSELAKEETRELAKEKTRELAKEKTRELAKEKTRELAKEKTRELAKEETSELAKEET 186
K+ ++ E + K R+L +E+ +L E K K K + + E
Sbjct: 986 KKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMISELE 1045
Query: 187 RELAKEETSELAKEETSELAKEETRELAK--EETSELAKEKTRELAKEEETRELAKEKTR 244
L KEE S E+ + E+ +L + E E +LAK+EE + A +
Sbjct: 1046 VRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELKAQLAKKEEELQAALARLE 1105
Query: 245 ELAKEKTRELAKEETSELAKEETKKLAKEKTRELAKEE 282
+ +K L K E + ++ + + K E
Sbjct: 1106 DETSQKNNALKKIRELESHISDLQEDLESEKAARNKAE 1143
Score = 48.3 bits (115), Expect = 1e-06
Identities = 51/267 (19%), Positives = 98/267 (36%), Gaps = 6/267 (2%)
Query: 20 KSAKEETSELAKEETSELAKEETSELAKEKTSELAKEETSELAKEKTRELAKEETRELA- 78
K ++E AK+E + KE + E K K +E + ET A
Sbjct: 851 KVTRQEEEMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAE 910
Query: 79 ---KEETSELAKEKTRELAKEETSELAKEETSELAKEKTRELAKEETRELAKEETSELAK 135
K++ E+ E + + +EE + ++ +++ +L ++ E A
Sbjct: 911 AEEMRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAA 970
Query: 136 EETRELAKEKTRELAKEKTRELA--KEKTRELAKEKTRELAKEETSELAKEETRELAKEE 193
+ +L K K+ ++ +++ +L KE+ + E E AK
Sbjct: 971 RQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNL 1030
Query: 194 TSELAKEETSELAKEETRELAKEETSELAKEKTRELAKEEETRELAKEKTRELAKEKTRE 253
T K E+ E + ++ EL K K + + + E E ++A+ K +
Sbjct: 1031 TKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELKAQL 1090
Query: 254 LAKEETSELAKEETKKLAKEKTRELAK 280
KEE + A + +K L K
Sbjct: 1091 AKKEEELQAALARLEDETSQKNNALKK 1117
Score = 41.7 bits (98), Expect = 2e-04
Identities = 33/199 (16%), Positives = 78/199 (39%), Gaps = 10/199 (5%)
Query: 91 RELAKEETSELAKEETSELAKEKTRELAKEETRELAKEETSELAKEETRELAKEKTRELA 150
E+ ++ +E + A+ + +EL ++ T+ ++ + + EL E
Sbjct: 857 EEMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAEEMRV 916
Query: 151 KEKTRELAKEKTRELAKEKTRELAKEETSELAKEETRELAKEETSELAKEETSELAKEET 210
+ + K++ E+ E + +EE + ++ +++ +L ++ E A +
Sbjct: 917 RLAAK---KQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQK 973
Query: 211 RELAKEETSELAKEKTRELAKEEET-------RELAKEKTRELAKEKTRELAKEETSELA 263
+L K K+ ++ E+ R+L +E+ +L E K +
Sbjct: 974 LQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKL 1033
Query: 264 KEETKKLAKEKTRELAKEE 282
K + + + E L KEE
Sbjct: 1034 KNKHESMISELEVRLKKEE 1052
Score = 41.4 bits (97), Expect = 3e-04
Identities = 39/201 (19%), Positives = 77/201 (38%), Gaps = 10/201 (4%)
Query: 20 KSAKEETSELAKEETSELAKEETSELAKEKTSELAKEETSELAKEKTRELAKEETRELAK 79
+++ ++L KE +L +E S+L E K + K K + E L K
Sbjct: 993 LIMEDQNNKLTKER--KLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKK 1050
Query: 80 EETSELAKEKTRELAKEETSELAKEETSELAKEKTRELAKEETRELAKEETSELAKEETR 139
E EK+R+ ++ +L E + + + E + ++ EL R
Sbjct: 1051 E-------EKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELKAQLAKKEEELQAALAR 1103
Query: 140 ELAKEKTRELAKEKTRELAKEKTRELAKEKTRELAKEETSELAKEETRELAKEETSELAK 199
+ + A +K REL + +L ++ E A +E K + E + +EL
Sbjct: 1104 LEDETSQKNNALKKIREL-ESHISDLQEDLESEKAARNKAEKQKRDLSEELEALKTELED 1162
Query: 200 EETSELAKEETRELAKEETSE 220
+ ++E R ++ +
Sbjct: 1163 TLDTTATQQELRGSDYKDDDD 1183
Score = 34.0 bits (78), Expect = 0.062
Identities = 32/175 (18%), Positives = 60/175 (34%), Gaps = 2/175 (1%)
Query: 15 EERGDKSAKEETSELAKEETSELAKEETSELAKEKTSELAKEETSELAKEKTRELAKEET 74
EER E K + K + + E L KEE S EK + + E+
Sbjct: 1010 EERVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGES 1069
Query: 75 RELAKE-ETSELAKEKTRELAKEETSELAKEETSELAKEKTRELAKEETRELAKEETSEL 133
+L ++ + + + ++ EL + + A ++ REL + S+L
Sbjct: 1070 SDLHEQIAELQAQIAELKAQLAKKEEELQAALARLEDETSQKNNALKKIREL-ESHISDL 1128
Query: 134 AKEETRELAKEKTRELAKEKTRELAKEKTRELAKEKTRELAKEETSELAKEETRE 188
++ E A E K E + EL ++E ++ +
Sbjct: 1129 QEDLESEKAARNKAEKQKRDLSEELEALKTELEDTLDTTATQQELRGSDYKDDDD 1183
Score = 27.5 bits (61), Expect = 6.6
Identities = 22/147 (14%), Positives = 46/147 (31%)
Query: 23 KEETSELAKEETSELAKEETSELAKEKTSELAKEETSELAKEKTRELAKEETRELAKEET 82
+ SEL E + E K K + + ++A+ + + + +EE
Sbjct: 1038 ESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELKAQLAKKEEEL 1097
Query: 83 SELAKEKTRELAKEETSELAKEETSELAKEKTRELAKEETRELAKEETSELAKEETRELA 142
E +++ + E + +L E+ E+ EE L
Sbjct: 1098 QAALARLEDETSQKNNALKKIRELESHISDLQEDLESEKAARNKAEKQKRDLSEELEALK 1157
Query: 143 KEKTRELAKEKTRELAKEKTRELAKEK 169
E L T++ + + +K
Sbjct: 1158 TELEDTLDTTATQQELRGSDYKDDDDK 1184
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system,
helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP;
2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Length = 1038
Score = 43.4 bits (102), Expect = 5e-05
Identities = 34/268 (12%), Positives = 87/268 (32%), Gaps = 5/268 (1%)
Query: 14 PEERGDKSAKEETSELAKEETSELAKEETSELAKEKTSELAKEETSELAKEKTRELAKEE 73
P + K++ +L E + + + + + +A EK + +
Sbjct: 766 PTSIESEKEKKDFVKLFGEYLRAENILQNYDEFATLKALQQIDLSDPVAVEKFKAEHYVD 825
Query: 74 TRELAKEETSELAKEKTRELAKEETSELAKEETSELAKEKTRELAKEETRELAKEETSEL 133
+ A+ +T L ++ + + +++ + E EK + + + + + +
Sbjct: 826 DEKFAELQTIRLPADRKIQDYRSAYNDIRDWQRREKEAEKKEKSTTDWDDVVFEVDLLKS 885
Query: 134 AKEETRELAKEKTRELAKEKTRELAKEKTRELAKEKTRELAKEETSELAKEETRELAKEE 193
+ + + K + E+ + L + AKE ++T +
Sbjct: 886 QEINLDYILGLIFEHNRQNKGKGEMIEEVKRLIRSSLGNRAKEGLVVDFIQQTNLDDLPD 945
Query: 194 TSELAKEETSELAKEETRELAKE-ETSELAKEKTRELAKEEETRELAKEKTRELAKEKTR 252
+ + + +E+ RE + L ++ + + RE A E EL
Sbjct: 946 KASIIDAFFTFAQREQQREAEALIKEENLNEDAAKRYIRTSLKREYATENGTEL----NE 1001
Query: 253 ELAKEETSELAKEETKKLAKEKTRELAK 280
L K + K+ +K +
Sbjct: 1002 TLPKLSPLNPQYKTKKQAVFQKIVSFIE 1029
Score = 41.4 bits (97), Expect = 2e-04
Identities = 34/260 (13%), Positives = 81/260 (31%), Gaps = 1/260 (0%)
Query: 24 EETSELAKEETSELAKEETSELAKEKTSELAKEETSELAKEKTRELAKEETRELAKEETS 83
E+ SE K++ +L E + + + + +A E+
Sbjct: 760 EQRFPDPTSIESEKEKKDFVKLFGEYLRAENILQNYDEFATLKALQQIDLSDPVAVEKFK 819
Query: 84 ELAKEKTRELAKEETSELAKEETSELAKEKTRELAKEETRELAKEETSELAKEETRELAK 143
+ A+ +T L + + + ++ + RE E+ + + + +
Sbjct: 820 AEHYVDDEKFAELQTIRLPADRKIQDYRSAYNDIRDWQRREKEAEKKEKSTTDWDDVVFE 879
Query: 144 EKTRELAKEKTRELAKEKTRELAKEKTRELAKEETSELAKEETRELAKEETSELAKEETS 203
+ + + + K + EE L + AKE ++T+
Sbjct: 880 VDLLKSQEINLDYILGLIFEHNRQNKGKGEMIEEVKRLIRSSLGNRAKEGLVVDFIQQTN 939
Query: 204 ELAKEETRELAKEETSELAKEKTRELAKEEETRELAKEKTRE-LAKEKTRELAKEETSEL 262
+ + + +E+ RE + L ++ + + RE A E +EL
Sbjct: 940 LDDLPDKASIIDAFFTFAQREQQREAEALIKEENLNEDAAKRYIRTSLKREYATENGTEL 999
Query: 263 AKEETKKLAKEKTRELAKEE 282
+ K + K+
Sbjct: 1000 NETLPKLSPLNPQYKTKKQA 1019
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor,
microtubles, motor protein; HET: ADP SPM; 2.81A
{Dictyostelium discoideum} PDB: 3vkh_A* 3vkh_C*
Length = 3245
Score = 43.4 bits (102), Expect = 6e-05
Identities = 33/200 (16%), Positives = 75/200 (37%), Gaps = 17/200 (8%)
Query: 85 LAKEKTRELAKEE---TSELAK-EETSELAKEKTRELA-KEETRELAKEETSELAKE--- 136
L EK +L +E+ L K +T K+ LA K ++ E+ ++ K+
Sbjct: 1907 LINEKRDQLEEEQLHLNIGLKKLRDTEAQVKDLQVSLAQKNRELDVKNEQANQKLKQMVQ 1966
Query: 137 ETRELAKEKTRELAKEKTRELAKEKTRELAKEKTRELAKEETSELAKEETRELAKE---E 193
+ + ++ + ++ ++ + +L K E + +EE +L
Sbjct: 1967 DQQAAEIKQKDARELQVQLDVRNKEIAVQKVKAYADLEKAEPTGPLREEVEQLENAANEL 2026
Query: 194 TSELAKEETSELAKEETRELAKEETSELAKEKTRELAKEEETR---ELAKEKTRELAKEK 250
+ + + A E++ KEE + L +E + + + + + + L E+
Sbjct: 2027 KLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTESSKVKNKVDRSIALLDNLNSER 2086
Query: 251 TRELAKEETSELAKEETKKL 270
R E+ SE + +
Sbjct: 2087 GRW---EQQSENFNTQMSTV 2103
Score = 41.0 bits (96), Expect = 4e-04
Identities = 32/176 (18%), Positives = 66/176 (37%), Gaps = 16/176 (9%)
Query: 109 LAKEKTRELAKEETR---ELAK-EETSELAKEETRELA-KEKTRELAKEKTRELAKEKTR 163
L EK +L +E+ L K +T K+ LA K + ++ E+ + K+ +
Sbjct: 1907 LINEKRDQLEEEQLHLNIGLKKLRDTEAQVKDLQVSLAQKNRELDVKNEQANQKLKQMVQ 1966
Query: 164 ELAK-EKTRELAKEETSELAKEETRELAKEETSELAKEETSELAKEETRELAKEETSELA 222
+ E ++ A+E +L +E + + ++L K E +EE +L
Sbjct: 1967 DQQAAEIKQKDARELQVQLDVRN------KEIAVQKVKAYADLEKAEPTGPLREEVEQLE 2020
Query: 223 KEKTRELAKEEETRELAKEKTRELAKEKTRELAKEETSELAKEETKKLAKEKTREL 278
K++E + +A K + T E+ K + + ++
Sbjct: 2021 NAANELKLKQDEIVATITALEKSIATYK----EEYATLIRETEQIKTESSKVKNKV 2072
Score = 36.0 bits (83), Expect = 0.015
Identities = 22/123 (17%), Positives = 47/123 (38%), Gaps = 9/123 (7%)
Query: 163 RELAKEKTRELAKEETSELAKEETRELAK-EETSELAKEETSELA-KEETRELAKEETSE 220
L EK +++ E L K +T K+ LA K ++ E+ ++
Sbjct: 1905 VLLINEK-----RDQLEEEQLHLNIGLKKLRDTEAQVKDLQVSLAQKNRELDVKNEQANQ 1959
Query: 221 LAKEKTRELAKEEETRELAKEKTRELAK--EKTRELAKEETSELAKEETKKLAKEKTREL 278
K+ ++ E ++ A+E +L ++ + ++L K E +E+ +L
Sbjct: 1960 KLKQMVQDQQAAEIKQKDARELQVQLDVRNKEIAVQKVKAYADLEKAEPTGPLREEVEQL 2019
Query: 279 AKE 281
Sbjct: 2020 ENA 2022
Score = 31.4 bits (71), Expect = 0.45
Identities = 13/86 (15%), Positives = 32/86 (37%), Gaps = 2/86 (2%)
Query: 199 KEETSELAKEETRELAK-EETSELAKEKTRELAKEEETRELAKEKTRELAKEKTRELAK- 256
+++ E L K +T K+ LA++ ++ E+ + K+ ++
Sbjct: 1912 RDQLEEEQLHLNIGLKKLRDTEAQVKDLQVSLAQKNRELDVKNEQANQKLKQMVQDQQAA 1971
Query: 257 EETSELAKEETKKLAKEKTRELAKEE 282
E + A+E +L ++
Sbjct: 1972 EIKQKDARELQVQLDVRNKEIAVQKV 1997
>3few_X Colicin S4; cell lysis, Y-RAY, cell killing, immune system; 2.45A
{Escherichia coli}
Length = 505
Score = 37.2 bits (85), Expect = 0.005
Identities = 25/188 (13%), Positives = 63/188 (33%)
Query: 83 SELAKEKTRELAKEETSELAKEETSELAKEKTRELAKEETRELAKEETSELAKEETRELA 142
SE AK E +T E E E R+ ++ E A + ++ ++
Sbjct: 161 SEKAKAGIMEKINHKTPEEIYEALGFNKDESQRQEKAKQQAEDAWDRLPPNVRKFDVDVE 220
Query: 143 KEKTRELAKEKTRELAKEKTRELAKEKTRELAKEETSELAKEETRELAKEETSELAKEET 202
+ + + L+ +T + + ++ + E+ + + +
Sbjct: 221 QFHYLVVLDDYGNVLSVTRTGVRPYVGSEKAKAGIMDKVDHKTPEEIYEALGFNNEEPQR 280
Query: 203 SELAKEETRELAKEETSELAKEKTRELAKEEETRELAKEKTRELAKEKTRELAKEETSEL 262
AK+ ++ + + ++ L K E K + + + LA+E ++
Sbjct: 281 QNQAKKAAYDVFYSFSMNRDRIQSDVLNKAAEVISDIGNKVGDYLGDAYKSLAREIADDV 340
Query: 263 AKEETKKL 270
+ K +
Sbjct: 341 KNFQGKTI 348
>2odr_C Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class
II, ligase; 3.23A {Methanococcus maripaludis}
Length = 701
Score = 34.6 bits (79), Expect = 0.032
Identities = 21/136 (15%), Positives = 41/136 (30%), Gaps = 4/136 (2%)
Query: 106 TSELAKEKTRELAKEETRELAKEETSELAKEETRELAKEKTRELAKEKTRELAKE----K 161
+S L + +EE E+A ++ + E + +K E K
Sbjct: 10 SSGLVPRGSHMFKREEIIEMANKDFEKAWIETKDLIKAKKINESYPRIKPVFGKTHPVND 69
Query: 162 TRELAKEKTRELAKEETSELAKEETRELAKEETSELAKEETSELAKEETRELAKEETSEL 221
T E ++ + EE + R++ K+ E + E
Sbjct: 70 TIENLRQAYLRMGFEEYINPVIVDERDIYKQFGPEAMAVLDRCFYLAGLPRPDVGLSDEK 129
Query: 222 AKEKTRELAKEEETRE 237
+ + K E +E
Sbjct: 130 ISQIEKLGIKVSEHKE 145
Score = 33.4 bits (76), Expect = 0.073
Identities = 19/139 (13%), Positives = 40/139 (28%), Gaps = 4/139 (2%)
Query: 111 KEKTRELAKEETRELAKEETSELAKEETRELAKEKTRELAKEKTRELAKEKTRELAKE-- 168
+ L + +EE E+A ++ + E + +K E K
Sbjct: 7 HHHSSGLVPRGSHMFKREEIIEMANKDFEKAWIETKDLIKAKKINESYPRIKPVFGKTHP 66
Query: 169 --KTRELAKEETSELAKEETRELAKEETSELAKEETSELAKEETRELAKEETSELAKEKT 226
T E ++ + EE + ++ K+ E R +
Sbjct: 67 VNDTIENLRQAYLRMGFEEYINPVIVDERDIYKQFGPEAMAVLDRCFYLAGLPRPDVGLS 126
Query: 227 RELAKEEETRELAKEKTRE 245
E + E + + +E
Sbjct: 127 DEKISQIEKLGIKVSEHKE 145
Score = 33.0 bits (75), Expect = 0.11
Identities = 16/141 (11%), Positives = 38/141 (26%)
Query: 122 TRELAKEETSELAKEETRELAKEKTRELAKEKTRELAKEKTRELAKEKTRELAKEETSEL 181
+ L + +EE E+A + + E + +K E K
Sbjct: 10 SSGLVPRGSHMFKREEIIEMANKDFEKAWIETKDLIKAKKINESYPRIKPVFGKTHPVND 69
Query: 182 AKEETRELAKEETSELAKEETSELAKEETRELAKEETSELAKEKTRELAKEEETRELAKE 241
E R+ E ++ ++ E + L + + ++
Sbjct: 70 TIENLRQAYLRMGFEEYINPVIVDERDIYKQFGPEAMAVLDRCFYLAGLPRPDVGLSDEK 129
Query: 242 KTRELAKEKTRELAKEETSEL 262
++ KE ++
Sbjct: 130 ISQIEKLGIKVSEHKESLQKI 150
Score = 32.3 bits (73), Expect = 0.17
Identities = 16/137 (11%), Positives = 35/137 (25%), Gaps = 2/137 (1%)
Query: 74 TRELAKEETSELAKEKTRELAKEETSELAKEETSELAKEKTRELAKEETRELAKEETSEL 133
+ L + +E+ E+A ++ + E + +K E K
Sbjct: 10 SSGLVPRGSHMFKREEIIEMANKDFEKAWIETKDLIKAKKINESYPRIKPVFGKTHPVND 69
Query: 134 AKEETRELAKEKTRELAKEKTRELAKEKTRELAKEK--TRELAKEETSELAKEETRELAK 191
E R+ E ++ ++ E + + K
Sbjct: 70 TIENLRQAYLRMGFEEYINPVIVDERDIYKQFGPEAMAVLDRCFYLAGLPRPDVGLSDEK 129
Query: 192 EETSELAKEETSELAKE 208
E + SE +
Sbjct: 130 ISQIEKLGIKVSEHKES 146
Score = 32.3 bits (73), Expect = 0.18
Identities = 15/136 (11%), Positives = 42/136 (30%), Gaps = 5/136 (3%)
Query: 98 TSELAKEETSELAKEKTRELAKEETRELAKEETSELAKEETRELAKEKTRELAKE----K 153
+S L + +E+ E+A ++ + E + ++ E K
Sbjct: 10 SSGLVPRGSHMFKREEIIEMANKDFEKAWIETKDLIKAKKINESYPRIKPVFGKTHPVND 69
Query: 154 TRELAKEKTRELA-KEKTRELAKEETSELAKEETRELAKEETSELAKEETSELAKEETRE 212
T E ++ + +E + +E + +A + +
Sbjct: 70 TIENLRQAYLRMGFEEYINPVIVDERDIYKQFGPEAMAVLDRCFYLAGLPRPDVGLSDEK 129
Query: 213 LAKEETSELAKEKTRE 228
+++ E + + +E
Sbjct: 130 ISQIEKLGIKVSEHKE 145
Score = 31.9 bits (72), Expect = 0.27
Identities = 21/147 (14%), Positives = 40/147 (27%), Gaps = 6/147 (4%)
Query: 18 GDKSAKEETSELAKEETSELAKEETSELAKEKTSELAKEETSELAKEKTRELAKEETREL 77
G +S L + +EE E+A + + E + +K E
Sbjct: 2 GSHHHHHHSSGLVPRGSHMFKREEIIEMANKDFEKAWIETKDLIKAKKINESYPRIKPVF 61
Query: 78 AKE----ETSELAKEKTRELAKEETSELAKEETSELAKEKTRELAKEETRELAKEETSEL 133
K +T E ++ + EE + ++ K+ E +
Sbjct: 62 GKTHPVNDTIENLRQAYLRMGFEEYINPVIVDERDIYKQFGPE--AMAVLDRCFYLAGLP 119
Query: 134 AKEETRELAKEKTRELAKEKTRELAKE 160
+ K E K E +
Sbjct: 120 RPDVGLSDEKISQIEKLGIKVSEHKES 146
Score = 31.1 bits (70), Expect = 0.45
Identities = 19/142 (13%), Positives = 41/142 (28%), Gaps = 6/142 (4%)
Query: 47 KEKTSELAKEETSELAKEKTRELAKEETRELAKEETSELAKEKTRELAKEETSELAKE-- 104
+S L + +E+ E+A ++ + E + +K E K
Sbjct: 7 HHHSSGLVPRGSHMFKREEIIEMANKDFEKAWIETKDLIKAKKINESYPRIKPVFGKTHP 66
Query: 105 --ETSELAKEKTRELAKEETRELAKEETSELAKEETRELAKEKTRELAKEKTRELAKEKT 162
+T E ++ + EE + ++ K+ E + +
Sbjct: 67 VNDTIENLRQAYLRMGFEEYINPVIVDERDIYKQFGPE--AMAVLDRCFYLAGLPRPDVG 124
Query: 163 RELAKEKTRELAKEETSELAKE 184
K E + SE +
Sbjct: 125 LSDEKISQIEKLGIKVSEHKES 146
Score = 28.8 bits (64), Expect = 2.1
Identities = 18/136 (13%), Positives = 38/136 (27%)
Query: 42 TSELAKEKTSELAKEETSELAKEKTRELAKEETRELAKEETSELAKEKTRELAKEETSEL 101
+S L + +EE E+A + + E + ++ +E K
Sbjct: 10 SSGLVPRGSHMFKREEIIEMANKDFEKAWIETKDLIKAKKINESYPRIKPVFGKTHPVND 69
Query: 102 AKEETSELAKEKTRELAKEETRELAKEETSELAKEETRELAKEKTRELAKEKTRELAKEK 161
E + E ++ + E L + L+ EK
Sbjct: 70 TIENLRQAYLRMGFEEYINPVIVDERDIYKQFGPEAMAVLDRCFYLAGLPRPDVGLSDEK 129
Query: 162 TRELAKEKTRELAKEE 177
++ K + +E
Sbjct: 130 ISQIEKLGIKVSEHKE 145
Score = 26.9 bits (59), Expect = 9.6
Identities = 8/45 (17%), Positives = 18/45 (40%)
Query: 240 KEKTRELAKEKTRELAKEETSELAKEETKKLAKEKTRELAKEETN 284
+ L + +EE E+A ++ +K E + ++ N
Sbjct: 7 HHHSSGLVPRGSHMFKREEIIEMANKDFEKAWIETKDLIKAKKIN 51
>3l4g_A Phenylalanyl-tRNA synthetase alpha chain; aminoacylation,
tRNA-binding, DNA-binding domain, four-helix
acetylation, aminoacyl-tRNA synthetase; HET: PHE; 3.30A
{Homo sapiens}
Length = 508
Score = 34.5 bits (79), Expect = 0.034
Identities = 22/140 (15%), Positives = 45/140 (32%), Gaps = 7/140 (5%)
Query: 14 PEERGDKSAKEETSELAKEETSELAKEETSELAKEKTSELAKEETSELAKEKTRELAKEE 73
E R +S E ++ K S+ K + K + + ++E
Sbjct: 76 HEARVFRSIPPEGLAQSELMRLPSGKVGFSKAMSNKWIRVDKSAADGPRVFRVVDSMEDE 135
Query: 74 TRELAKEETSELAKEKTRELAKEETSELAKEETSELAKEKTRELAKEETRELAKEETSEL 133
+ + + + +L ++E SEL K + KT ++K S+
Sbjct: 136 VQRRLQ----LVRGGQAEKLGEKERSELRKRKLLAEVTLKTYWVSK---GSAFSTSISKQ 188
Query: 134 AKEETRELAKEKTRELAKEK 153
E + E+ + K
Sbjct: 189 ETELSPEMISSGSWRDRPFK 208
>3u1k_A Polyribonucleotide nucleotidyltransferase 1, MITO; RNAse PH, KH
domain, exoribonuclease; HET: CIT; 2.13A {Homo sapiens}
Length = 630
Score = 33.6 bits (78), Expect = 0.074
Identities = 20/100 (20%), Positives = 36/100 (36%), Gaps = 4/100 (4%)
Query: 183 KEETRELAKEETSELAKEETSELAKEETRELAKEETSELAKEKTRELAKEEETRELAKEK 242
++ +E + + S + T +LA E + + + K R+ A K
Sbjct: 221 QQLVKETGVTKRTPQKLFTPSPEIVKYTHKLAMERLYAVFTDYEHD--KVS--RDEAVNK 276
Query: 243 TRELAKEKTRELAKEETSELAKEETKKLAKEKTRELAKEE 282
R +E+ +E E E +AKE R + E
Sbjct: 277 IRLDTEEQLKEKFPEADPYEIIESFNVVAKEVFRSIVLNE 316
>2odr_A Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class
II, ligase; 3.23A {Methanococcus maripaludis}
Length = 665
Score = 33.0 bits (75), Expect = 0.11
Identities = 21/136 (15%), Positives = 41/136 (30%), Gaps = 4/136 (2%)
Query: 106 TSELAKEKTRELAKEETRELAKEETSELAKEETRELAKEKTRELAKEKTRELAKE----K 161
+S L + +EE E+A ++ + E + +K E K
Sbjct: 10 SSGLVPRGSHMFKREEIIEMANKDFEKAWIETKDLIKAKKINESYPRIKPVFGKTHPVND 69
Query: 162 TRELAKEKTRELAKEETSELAKEETRELAKEETSELAKEETSELAKEETRELAKEETSEL 221
T E ++ + EE + R++ K+ E + E
Sbjct: 70 TIENLRQAYLRMGFEEYINPVIVDERDIYKQFGPEAMAVLDRCFYLAGLPRPDVGLSDEK 129
Query: 222 AKEKTRELAKEEETRE 237
+ + K E +E
Sbjct: 130 ISQIEKLGIKVSEHKE 145
Score = 33.0 bits (75), Expect = 0.11
Identities = 20/136 (14%), Positives = 43/136 (31%), Gaps = 4/136 (2%)
Query: 130 TSELAKEETRELAKEKTRELAKEKTRELAKEKTRELAKEKTRELAKEETSELAKE----E 185
+S L + +E+ E+A + + E + +K E K +
Sbjct: 10 SSGLVPRGSHMFKREEIIEMANKDFEKAWIETKDLIKAKKINESYPRIKPVFGKTHPVND 69
Query: 186 TRELAKEETSELAKEETSELAKEETRELAKEETSELAKEKTRELAKEEETRELAKEKTRE 245
T E ++ + EE + R++ K+ E R R +
Sbjct: 70 TIENLRQAYLRMGFEEYINPVIVDERDIYKQFGPEAMAVLDRCFYLAGLPRPDVGLSDEK 129
Query: 246 LAKEKTRELAKEETSE 261
+++ + + E E
Sbjct: 130 ISQIEKLGIKVSEHKE 145
Score = 32.3 bits (73), Expect = 0.21
Identities = 19/139 (13%), Positives = 40/139 (28%), Gaps = 4/139 (2%)
Query: 111 KEKTRELAKEETRELAKEETSELAKEETRELAKEKTRELAKEKTRELAKEKTRELAKE-- 168
+ L + +EE E+A ++ + E + +K E K
Sbjct: 7 HHHSSGLVPRGSHMFKREEIIEMANKDFEKAWIETKDLIKAKKINESYPRIKPVFGKTHP 66
Query: 169 --KTRELAKEETSELAKEETRELAKEETSELAKEETSELAKEETRELAKEETSELAKEKT 226
T E ++ + EE + ++ K+ E R +
Sbjct: 67 VNDTIENLRQAYLRMGFEEYINPVIVDERDIYKQFGPEAMAVLDRCFYLAGLPRPDVGLS 126
Query: 227 RELAKEEETRELAKEKTRE 245
E + E + + +E
Sbjct: 127 DEKISQIEKLGIKVSEHKE 145
Score = 32.3 bits (73), Expect = 0.21
Identities = 16/141 (11%), Positives = 38/141 (26%)
Query: 122 TRELAKEETSELAKEETRELAKEKTRELAKEKTRELAKEKTRELAKEKTRELAKEETSEL 181
+ L + +EE E+A + + E + +K E K
Sbjct: 10 SSGLVPRGSHMFKREEIIEMANKDFEKAWIETKDLIKAKKINESYPRIKPVFGKTHPVND 69
Query: 182 AKEETRELAKEETSELAKEETSELAKEETRELAKEETSELAKEKTRELAKEEETRELAKE 241
E R+ E ++ ++ E + L + + ++
Sbjct: 70 TIENLRQAYLRMGFEEYINPVIVDERDIYKQFGPEAMAVLDRCFYLAGLPRPDVGLSDEK 129
Query: 242 KTRELAKEKTRELAKEETSEL 262
++ KE ++
Sbjct: 130 ISQIEKLGIKVSEHKESLQKI 150
Score = 31.5 bits (71), Expect = 0.35
Identities = 16/122 (13%), Positives = 34/122 (27%)
Query: 74 TRELAKEETSELAKEKTRELAKEETSELAKEETSELAKEKTRELAKEETRELAKEETSEL 133
+ L + +E+ E+A ++ + E + +K E K
Sbjct: 10 SSGLVPRGSHMFKREEIIEMANKDFEKAWIETKDLIKAKKINESYPRIKPVFGKTHPVND 69
Query: 134 AKEETRELAKEKTRELAKEKTRELAKEKTRELAKEKTRELAKEETSELAKEETRELAKEE 193
E R+ E ++ ++ E L + L+ E+
Sbjct: 70 TIENLRQAYLRMGFEEYINPVIVDERDIYKQFGPEAMAVLDRCFYLAGLPRPDVGLSDEK 129
Query: 194 TS 195
S
Sbjct: 130 IS 131
Score = 31.1 bits (70), Expect = 0.50
Identities = 15/136 (11%), Positives = 42/136 (30%), Gaps = 5/136 (3%)
Query: 98 TSELAKEETSELAKEKTRELAKEETRELAKEETSELAKEETRELAKEKTRELAKE----K 153
+S L + +E+ E+A ++ + E + ++ E K
Sbjct: 10 SSGLVPRGSHMFKREEIIEMANKDFEKAWIETKDLIKAKKINESYPRIKPVFGKTHPVND 69
Query: 154 TRELAKEKTRELA-KEKTRELAKEETSELAKEETRELAKEETSELAKEETSELAKEETRE 212
T E ++ + +E + +E + +A + +
Sbjct: 70 TIENLRQAYLRMGFEEYINPVIVDERDIYKQFGPEAMAVLDRCFYLAGLPRPDVGLSDEK 129
Query: 213 LAKEETSELAKEKTRE 228
+++ E + + +E
Sbjct: 130 ISQIEKLGIKVSEHKE 145
Score = 30.3 bits (68), Expect = 0.72
Identities = 16/95 (16%), Positives = 34/95 (35%), Gaps = 4/95 (4%)
Query: 58 TSELAKEKTRELAKEETRELAKEETSELAKEKTRELAKEETSELAKEETSELAKE----K 113
+S L + +EE E+A ++ + E + ++ +E K
Sbjct: 10 SSGLVPRGSHMFKREEIIEMANKDFEKAWIETKDLIKAKKINESYPRIKPVFGKTHPVND 69
Query: 114 TRELAKEETRELAKEETSELAKEETRELAKEKTRE 148
T E ++ + EE + R++ K+ E
Sbjct: 70 TIENLRQAYLRMGFEEYINPVIVDERDIYKQFGPE 104
Score = 30.3 bits (68), Expect = 0.77
Identities = 21/147 (14%), Positives = 40/147 (27%), Gaps = 6/147 (4%)
Query: 18 GDKSAKEETSELAKEETSELAKEETSELAKEKTSELAKEETSELAKEKTRELAKEETREL 77
G +S L + +EE E+A + + E + +K E
Sbjct: 2 GSHHHHHHSSGLVPRGSHMFKREEIIEMANKDFEKAWIETKDLIKAKKINESYPRIKPVF 61
Query: 78 AKE----ETSELAKEKTRELAKEETSELAKEETSELAKEKTRELAKEETRELAKEETSEL 133
K +T E ++ + EE + ++ K+ E +
Sbjct: 62 GKTHPVNDTIENLRQAYLRMGFEEYINPVIVDERDIYKQFGPE--AMAVLDRCFYLAGLP 119
Query: 134 AKEETRELAKEKTRELAKEKTRELAKE 160
+ K E K E +
Sbjct: 120 RPDVGLSDEKISQIEKLGIKVSEHKES 146
Score = 29.9 bits (67), Expect = 0.94
Identities = 14/125 (11%), Positives = 32/125 (25%)
Query: 63 KEKTRELAKEETRELAKEETSELAKEKTRELAKEETSELAKEETSELAKEKTRELAKEET 122
+ L + +EE E+A + + E + ++ +E K
Sbjct: 7 HHHSSGLVPRGSHMFKREEIIEMANKDFEKAWIETKDLIKAKKINESYPRIKPVFGKTHP 66
Query: 123 RELAKEETSELAKEETRELAKEKTRELAKEKTRELAKEKTRELAKEKTRELAKEETSELA 182
E + E ++ ++ E L + L+
Sbjct: 67 VNDTIENLRQAYLRMGFEEYINPVIVDERDIYKQFGPEAMAVLDRCFYLAGLPRPDVGLS 126
Query: 183 KEETR 187
E+
Sbjct: 127 DEKIS 131
Score = 29.6 bits (66), Expect = 1.2
Identities = 19/142 (13%), Positives = 41/142 (28%), Gaps = 6/142 (4%)
Query: 47 KEKTSELAKEETSELAKEKTRELAKEETRELAKEETSELAKEKTRELAKEETSELAKE-- 104
+S L + +E+ E+A ++ + E + +K E K
Sbjct: 7 HHHSSGLVPRGSHMFKREEIIEMANKDFEKAWIETKDLIKAKKINESYPRIKPVFGKTHP 66
Query: 105 --ETSELAKEKTRELAKEETRELAKEETSELAKEETRELAKEKTRELAKEKTRELAKEKT 162
+T E ++ + EE + ++ K+ E + +
Sbjct: 67 VNDTIENLRQAYLRMGFEEYINPVIVDERDIYKQFGPE--AMAVLDRCFYLAGLPRPDVG 124
Query: 163 RELAKEKTRELAKEETSELAKE 184
K E + SE +
Sbjct: 125 LSDEKISQIEKLGIKVSEHKES 146
Score = 28.0 bits (62), Expect = 4.0
Identities = 18/136 (13%), Positives = 38/136 (27%)
Query: 42 TSELAKEKTSELAKEETSELAKEKTRELAKEETRELAKEETSELAKEKTRELAKEETSEL 101
+S L + +EE E+A + + E + ++ +E K
Sbjct: 10 SSGLVPRGSHMFKREEIIEMANKDFEKAWIETKDLIKAKKINESYPRIKPVFGKTHPVND 69
Query: 102 AKEETSELAKEKTRELAKEETRELAKEETSELAKEETRELAKEKTRELAKEKTRELAKEK 161
E + E ++ + E L + L+ EK
Sbjct: 70 TIENLRQAYLRMGFEEYINPVIVDERDIYKQFGPEAMAVLDRCFYLAGLPRPDVGLSDEK 129
Query: 162 TRELAKEKTRELAKEE 177
++ K + +E
Sbjct: 130 ISQIEKLGIKVSEHKE 145
>3l4j_A DNA topoisomerase 2; topoisomerase, protein-DNA complex, covalently
linked comple supercoiling; HET: DNA PTR TSP; 2.48A
{Saccharomyces cerevisiae} PDB: 3l4k_A* 1bjt_A 1bgw_A
2rgr_A*
Length = 757
Score = 32.7 bits (74), Expect = 0.13
Identities = 18/134 (13%), Positives = 32/134 (23%), Gaps = 2/134 (1%)
Query: 103 KEETSELAKEKTRELAKEETRELAKEETSELAKEETRELAKEKTRELAKEKTRELAKEKT 162
EL KE + + A +
Sbjct: 626 NAIIQELENLGFPRFNKEGKPYYGSPNDEIAEQINDVKGATSDEEDEESSHEDTENVING 685
Query: 163 RELAKEKTRELAKEETSELAKEETRELAKEETSELAKEETSELAKEETRELAKEETSELA 222
E L L KE ++L K+ + + E L K +++ +
Sbjct: 686 PEELYGTYEYLLGMRIWSLTKERYQKLLKQ--KQEKETELENLLKLSAKDIWNTDLKAFE 743
Query: 223 KEKTRELAKEEETR 236
L ++ E R
Sbjct: 744 VGYQEFLQRDAEAR 757
>2odr_B Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class
II, ligase; 3.23A {Methanococcus maripaludis}
Length = 648
Score = 32.3 bits (73), Expect = 0.18
Identities = 21/136 (15%), Positives = 41/136 (30%), Gaps = 4/136 (2%)
Query: 106 TSELAKEKTRELAKEETRELAKEETSELAKEETRELAKEKTRELAKEKTRELAKE----K 161
+S L + +EE E+A ++ + E + +K E K
Sbjct: 10 SSGLVPRGSHMFKREEIIEMANKDFEKAWIETKDLIKAKKINESYPRIKPVFGKTHPVND 69
Query: 162 TRELAKEKTRELAKEETSELAKEETRELAKEETSELAKEETSELAKEETRELAKEETSEL 221
T E ++ + EE + R++ K+ E + E
Sbjct: 70 TIENLRQAYLRMGFEEYINPVIVDERDIYKQFGPEAMAVLDRCFYLAGLPRPDVGLSDEK 129
Query: 222 AKEKTRELAKEEETRE 237
+ + K E +E
Sbjct: 130 ISQIEKLGIKVSEHKE 145
Score = 32.3 bits (73), Expect = 0.19
Identities = 20/136 (14%), Positives = 43/136 (31%), Gaps = 4/136 (2%)
Query: 130 TSELAKEETRELAKEKTRELAKEKTRELAKEKTRELAKEKTRELAKEETSELAKE----E 185
+S L + +E+ E+A + + E + +K E K +
Sbjct: 10 SSGLVPRGSHMFKREEIIEMANKDFEKAWIETKDLIKAKKINESYPRIKPVFGKTHPVND 69
Query: 186 TRELAKEETSELAKEETSELAKEETRELAKEETSELAKEKTRELAKEEETRELAKEKTRE 245
T E ++ + EE + R++ K+ E R R +
Sbjct: 70 TIENLRQAYLRMGFEEYINPVIVDERDIYKQFGPEAMAVLDRCFYLAGLPRPDVGLSDEK 129
Query: 246 LAKEKTRELAKEETSE 261
+++ + + E E
Sbjct: 130 ISQIEKLGIKVSEHKE 145
Score = 31.5 bits (71), Expect = 0.32
Identities = 19/139 (13%), Positives = 40/139 (28%), Gaps = 4/139 (2%)
Query: 111 KEKTRELAKEETRELAKEETSELAKEETRELAKEKTRELAKEKTRELAKEKTRELAKE-- 168
+ L + +EE E+A ++ + E + +K E K
Sbjct: 7 HHHSSGLVPRGSHMFKREEIIEMANKDFEKAWIETKDLIKAKKINESYPRIKPVFGKTHP 66
Query: 169 --KTRELAKEETSELAKEETRELAKEETSELAKEETSELAKEETRELAKEETSELAKEKT 226
T E ++ + EE + ++ K+ E R +
Sbjct: 67 VNDTIENLRQAYLRMGFEEYINPVIVDERDIYKQFGPEAMAVLDRCFYLAGLPRPDVGLS 126
Query: 227 RELAKEEETRELAKEKTRE 245
E + E + + +E
Sbjct: 127 DEKISQIEKLGIKVSEHKE 145
Score = 31.5 bits (71), Expect = 0.38
Identities = 16/141 (11%), Positives = 38/141 (26%)
Query: 122 TRELAKEETSELAKEETRELAKEKTRELAKEKTRELAKEKTRELAKEKTRELAKEETSEL 181
+ L + +EE E+A + + E + +K E K
Sbjct: 10 SSGLVPRGSHMFKREEIIEMANKDFEKAWIETKDLIKAKKINESYPRIKPVFGKTHPVND 69
Query: 182 AKEETRELAKEETSELAKEETSELAKEETRELAKEETSELAKEKTRELAKEEETRELAKE 241
E R+ E ++ ++ E + L + + ++
Sbjct: 70 TIENLRQAYLRMGFEEYINPVIVDERDIYKQFGPEAMAVLDRCFYLAGLPRPDVGLSDEK 129
Query: 242 KTRELAKEKTRELAKEETSEL 262
++ KE ++
Sbjct: 130 ISQIEKLGIKVSEHKESLQKI 150
Score = 30.7 bits (69), Expect = 0.57
Identities = 16/122 (13%), Positives = 34/122 (27%)
Query: 74 TRELAKEETSELAKEKTRELAKEETSELAKEETSELAKEKTRELAKEETRELAKEETSEL 133
+ L + +E+ E+A ++ + E + +K E K
Sbjct: 10 SSGLVPRGSHMFKREEIIEMANKDFEKAWIETKDLIKAKKINESYPRIKPVFGKTHPVND 69
Query: 134 AKEETRELAKEKTRELAKEKTRELAKEKTRELAKEKTRELAKEETSELAKEETRELAKEE 193
E R+ E ++ ++ E L + L+ E+
Sbjct: 70 TIENLRQAYLRMGFEEYINPVIVDERDIYKQFGPEAMAVLDRCFYLAGLPRPDVGLSDEK 129
Query: 194 TS 195
S
Sbjct: 130 IS 131
Score = 30.0 bits (67), Expect = 0.96
Identities = 18/141 (12%), Positives = 45/141 (31%)
Query: 98 TSELAKEETSELAKEKTRELAKEETRELAKEETSELAKEETRELAKEKTRELAKEKTREL 157
+S L + +E+ E+A ++ + E + ++ E K
Sbjct: 10 SSGLVPRGSHMFKREEIIEMANKDFEKAWIETKDLIKAKKINESYPRIKPVFGKTHPVND 69
Query: 158 AKEKTRELAKEKTRELAKEETSELAKEETRELAKEETSELAKEETSELAKEETRELAKEE 217
E R+ E ++ ++ E + L + L+ E+
Sbjct: 70 TIENLRQAYLRMGFEEYINPVIVDERDIYKQFGPEAMAVLDRCFYLAGLPRPDVGLSDEK 129
Query: 218 TSELAKEKTRELAKEEETREL 238
S++ K + +E +++
Sbjct: 130 ISQIEKLGIKVSEHKESLQKI 150
Score = 30.0 bits (67), Expect = 1.1
Identities = 16/95 (16%), Positives = 34/95 (35%), Gaps = 4/95 (4%)
Query: 58 TSELAKEKTRELAKEETRELAKEETSELAKEKTRELAKEETSELAKEETSELAKE----K 113
+S L + +EE E+A ++ + E + ++ +E K
Sbjct: 10 SSGLVPRGSHMFKREEIIEMANKDFEKAWIETKDLIKAKKINESYPRIKPVFGKTHPVND 69
Query: 114 TRELAKEETRELAKEETSELAKEETRELAKEKTRE 148
T E ++ + EE + R++ K+ E
Sbjct: 70 TIENLRQAYLRMGFEEYINPVIVDERDIYKQFGPE 104
Score = 29.6 bits (66), Expect = 1.3
Identities = 21/147 (14%), Positives = 40/147 (27%), Gaps = 6/147 (4%)
Query: 18 GDKSAKEETSELAKEETSELAKEETSELAKEKTSELAKEETSELAKEKTRELAKEETREL 77
G +S L + +EE E+A + + E + +K E
Sbjct: 2 GSHHHHHHSSGLVPRGSHMFKREEIIEMANKDFEKAWIETKDLIKAKKINESYPRIKPVF 61
Query: 78 AKE----ETSELAKEKTRELAKEETSELAKEETSELAKEKTRELAKEETRELAKEETSEL 133
K +T E ++ + EE + ++ K+ E +
Sbjct: 62 GKTHPVNDTIENLRQAYLRMGFEEYINPVIVDERDIYKQFGPE--AMAVLDRCFYLAGLP 119
Query: 134 AKEETRELAKEKTRELAKEKTRELAKE 160
+ K E K E +
Sbjct: 120 RPDVGLSDEKISQIEKLGIKVSEHKES 146
Score = 29.6 bits (66), Expect = 1.5
Identities = 14/125 (11%), Positives = 32/125 (25%)
Query: 63 KEKTRELAKEETRELAKEETSELAKEKTRELAKEETSELAKEETSELAKEKTRELAKEET 122
+ L + +EE E+A + + E + ++ +E K
Sbjct: 7 HHHSSGLVPRGSHMFKREEIIEMANKDFEKAWIETKDLIKAKKINESYPRIKPVFGKTHP 66
Query: 123 RELAKEETSELAKEETRELAKEKTRELAKEKTRELAKEKTRELAKEKTRELAKEETSELA 182
E + E ++ ++ E L + L+
Sbjct: 67 VNDTIENLRQAYLRMGFEEYINPVIVDERDIYKQFGPEAMAVLDRCFYLAGLPRPDVGLS 126
Query: 183 KEETR 187
E+
Sbjct: 127 DEKIS 131
Score = 28.8 bits (64), Expect = 2.3
Identities = 19/142 (13%), Positives = 41/142 (28%), Gaps = 6/142 (4%)
Query: 47 KEKTSELAKEETSELAKEKTRELAKEETRELAKEETSELAKEKTRELAKEETSELAKE-- 104
+S L + +E+ E+A ++ + E + +K E K
Sbjct: 7 HHHSSGLVPRGSHMFKREEIIEMANKDFEKAWIETKDLIKAKKINESYPRIKPVFGKTHP 66
Query: 105 --ETSELAKEKTRELAKEETRELAKEETSELAKEETRELAKEKTRELAKEKTRELAKEKT 162
+T E ++ + EE + ++ K+ E + +
Sbjct: 67 VNDTIENLRQAYLRMGFEEYINPVIVDERDIYKQFGPE--AMAVLDRCFYLAGLPRPDVG 124
Query: 163 RELAKEKTRELAKEETSELAKE 184
K E + SE +
Sbjct: 125 LSDEKISQIEKLGIKVSEHKES 146
Score = 27.6 bits (61), Expect = 6.3
Identities = 18/136 (13%), Positives = 38/136 (27%)
Query: 42 TSELAKEKTSELAKEETSELAKEKTRELAKEETRELAKEETSELAKEKTRELAKEETSEL 101
+S L + +EE E+A + + E + ++ +E K
Sbjct: 10 SSGLVPRGSHMFKREEIIEMANKDFEKAWIETKDLIKAKKINESYPRIKPVFGKTHPVND 69
Query: 102 AKEETSELAKEKTRELAKEETRELAKEETSELAKEETRELAKEKTRELAKEKTRELAKEK 161
E + E ++ + E L + L+ EK
Sbjct: 70 TIENLRQAYLRMGFEEYINPVIVDERDIYKQFGPEAMAVLDRCFYLAGLPRPDVGLSDEK 129
Query: 162 TRELAKEKTRELAKEE 177
++ K + +E
Sbjct: 130 ISQIEKLGIKVSEHKE 145
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome
segregation, cell adhesion, kleisin, MIT cell cycle;
HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP:
c.37.1.12
Length = 430
Score = 31.6 bits (72), Expect = 0.27
Identities = 22/164 (13%), Positives = 59/164 (35%), Gaps = 7/164 (4%)
Query: 90 TRELAKEETSELAKEETSELAKEKTRELAKEETRELAKEETSELAKEETRELAKEKTREL 149
R +++ + + + K+ + L E L K + + + + ++A + EL
Sbjct: 108 MRIISRNGDTSYKIDGKTVSYKDYSIFL--ENENILIKAKNFLVFQGDVEQIAAQSPVEL 165
Query: 150 AKEKTRELAKEKTRELAKEKTRELAKEETSELAKEETRELAKEETSELAKEETSELAKEE 209
+ +E + + +K E KE+ +L+K T + + E
Sbjct: 166 -----SRMFEEVSGSIQYKKEYEELKEKIEKLSKSATESIKNRRRIHGELKTYKSPGLEV 220
Query: 210 TRELAKEETSELAKEKTRELAKEEETRELAKEKTRELAKEKTRE 253
+ + + A+ + + E E + ++K + ++
Sbjct: 221 LFQGPRGSRYDEAEGRFEVINNETEQLKAEEKKILNQFLKIKKK 264
>2atm_A Hyaluronoglucosaminidase; beta-alpha-barrels, hydrolase; HET: MES;
2.00A {Vespula vulgaris}
Length = 331
Score = 31.4 bits (71), Expect = 0.29
Identities = 11/51 (21%), Positives = 23/51 (45%), Gaps = 3/51 (5%)
Query: 145 KTRELAKEKTRELAKEKTRELAKEKTRELAKEETSELAK---EETRELAKE 192
++ K + +L + + K+ A + + A+ EET +LAK+
Sbjct: 120 GNMKIHKNFSIDLVRNEHPTWNKKXIELEASKRFEKYARFFMEETLKLAKK 170
Score = 31.4 bits (71), Expect = 0.29
Identities = 12/51 (23%), Positives = 23/51 (45%), Gaps = 3/51 (5%)
Query: 161 KTRELAKEKTRELAKEETSELAKEETRELAKEETSELAK---EETSELAKE 208
++ K + +L + E K+ A + + A+ EET +LAK+
Sbjct: 120 GNMKIHKNFSIDLVRNEHPTWNKKXIELEASKRFEKYARFFMEETLKLAKK 170
Score = 30.2 bits (68), Expect = 0.65
Identities = 12/51 (23%), Positives = 23/51 (45%), Gaps = 3/51 (5%)
Query: 65 KTRELAKEETRELAKEETSELAKEKTRELAKEETSELAK---EETSELAKE 112
++ K + +L + E K+ A + + A+ EET +LAK+
Sbjct: 120 GNMKIHKNFSIDLVRNEHPTWNKKXIELEASKRFEKYARFFMEETLKLAKK 170
Score = 29.8 bits (67), Expect = 0.91
Identities = 11/51 (21%), Positives = 24/51 (47%), Gaps = 3/51 (5%)
Query: 234 ETRELAKEKTRELAKEKTRELAKEETSELAKEETKKLAK---EKTRELAKE 281
++ K + +L + + K+ A + +K A+ E+T +LAK+
Sbjct: 120 GNMKIHKNFSIDLVRNEHPTWNKKXIELEASKRFEKYARFFMEETLKLAKK 170
Score = 29.5 bits (66), Expect = 1.2
Identities = 11/51 (21%), Positives = 24/51 (47%), Gaps = 3/51 (5%)
Query: 137 ETRELAKEKTRELAKEKTRELAKEKTRELAKEKTRELAK---EETSELAKE 184
++ K + +L + + K+ A ++ + A+ EET +LAK+
Sbjct: 120 GNMKIHKNFSIDLVRNEHPTWNKKXIELEASKRFEKYARFFMEETLKLAKK 170
>2odr_D Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class
II, ligase; 3.23A {Methanococcus maripaludis}
Length = 685
Score = 31.1 bits (70), Expect = 0.44
Identities = 19/139 (13%), Positives = 40/139 (28%), Gaps = 4/139 (2%)
Query: 111 KEKTRELAKEETRELAKEETSELAKEETRELAKEKTRELAKEKTRELAKEKTRELAKE-- 168
+ L + +EE E+A ++ + E + +K E K
Sbjct: 7 HHHSSGLVPRGSHMFKREEIIEMANKDFEKAWIETKDLIKAKKINESYPRIKPVFGKTHP 66
Query: 169 --KTRELAKEETSELAKEETRELAKEETSELAKEETSELAKEETRELAKEETSELAKEKT 226
T E ++ + EE + ++ K+ E R +
Sbjct: 67 VNDTIENLRQAYLRMGFEEYINPVIVDERDIYKQFGPEAMAVLDRCFYLAGLPRPDVGLS 126
Query: 227 RELAKEEETRELAKEKTRE 245
E + E + + +E
Sbjct: 127 DEKISQIEKLGIKVSEHKE 145
Score = 29.6 bits (66), Expect = 1.4
Identities = 20/140 (14%), Positives = 40/140 (28%), Gaps = 4/140 (2%)
Query: 122 TRELAKEETSELAKEETRELAKEKTRELAKEKTRELAKEKTRELAKEKTRELAKEETSEL 181
+ L + +EE E+A + + E + +K E K
Sbjct: 10 SSGLVPRGSHMFKREEIIEMANKDFEKAWIETKDLIKAKKINESYPRIKPVFGKTHPVND 69
Query: 182 AKEETRELAKEETSELAKEETSELAKEETRELAKEETSELAKEKTRELAKEEETRELAKE 241
E R+ + EE + R++ K+ E R R
Sbjct: 70 TIENLRQAY----LRMGFEEYINPVIVDERDIYKQFGPEAMAVLDRCFYLAGLPRPDVGL 125
Query: 242 KTRELAKEKTRELAKEETSE 261
++++ + + E E
Sbjct: 126 SDEKISQIEKLGIKVSEHKE 145
Score = 28.8 bits (64), Expect = 2.2
Identities = 24/148 (16%), Positives = 45/148 (30%), Gaps = 6/148 (4%)
Query: 18 GDKSAKEETSELAKEETSELAKEETSELAKEKTSELAKEETSELAKEKTRELAKEETREL 77
G +S L + +EE E+A + + E + +K E
Sbjct: 2 GSHHHHHHSSGLVPRGSHMFKREEIIEMANKDFEKAWIETKDLIKAKKINESYPRIKPVF 61
Query: 78 AKE----ETSELAKEKTRELAKEETSELAKEETSELAKEKTREL--AKEETRELAKEETS 131
K +T E ++ + EE + ++ K+ E + LA
Sbjct: 62 GKTHPVNDTIENLRQAYLRMGFEEYINPVIVDERDIYKQFGPEAMAVLDRCFYLAGLPRP 121
Query: 132 ELAKEETRELAKEKTRELAKEKTRELAK 159
++ + + EK E L K
Sbjct: 122 DVGLSDEKISQIEKLGIKVSEHKESLQK 149
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain
cytoplasmic; motor protein, AAA+ protein, ASCE protein,
P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma
japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Length = 2695
Score = 30.6 bits (69), Expect = 0.68
Identities = 14/80 (17%), Positives = 26/80 (32%), Gaps = 4/80 (5%)
Query: 107 SELAKEKTRELAKEETR---ELAK-EETSELAKEETRELAKEKTRELAKEKTRELAKEKT 162
+L K ++L + + L K E+ E + L+ + L EK R L K
Sbjct: 1856 VKLVTAKYQDLQENQRFVNVGLEKLNESVLKVNELNKTLSISLVKSLTFEKERWLNTTKQ 1915
Query: 163 RELAKEKTRELAKEETSELA 182
++ +
Sbjct: 1916 FSKTSQELIGNCIISSIYET 1935
Score = 30.2 bits (68), Expect = 0.84
Identities = 13/79 (16%), Positives = 28/79 (35%), Gaps = 10/79 (12%)
Query: 59 SELAKEKTRELAKEETR---ELAK-EETSELAKEKTRELAKEETSELAKEETSELAKEKT 114
+L K ++L + + L K E+ E + L+ L E KE+
Sbjct: 1856 VKLVTAKYQDLQENQRFVNVGLEKLNESVLKVNELNKTLSISLVKSLTFE------KERW 1909
Query: 115 RELAKEETRELAKEETSEL 133
K+ ++ + + +
Sbjct: 1910 LNTTKQFSKTSQELIGNCI 1928
Score = 29.4 bits (66), Expect = 1.7
Identities = 12/64 (18%), Positives = 24/64 (37%), Gaps = 1/64 (1%)
Query: 183 KEETRELAKEETSELAK-EETSELAKEETRELAKEETSELAKEKTRELAKEEETRELAKE 241
++ +E + L K E+ E + L+ L EK R L ++ + ++E
Sbjct: 1863 YQDLQENQRFVNVGLEKLNESVLKVNELNKTLSISLVKSLTFEKERWLNTTKQFSKTSQE 1922
Query: 242 KTRE 245
Sbjct: 1923 LIGN 1926
Score = 28.3 bits (63), Expect = 3.9
Identities = 12/79 (15%), Positives = 25/79 (31%), Gaps = 10/79 (12%)
Query: 75 RELAKEETSELAKEKTR---ELAK-EETSELAKEETSELAKEKTRELAKEETRELAKEET 130
+L + +L + + L K E+ E L+ + L E KE
Sbjct: 1856 VKLVTAKYQDLQENQRFVNVGLEKLNESVLKVNELNKTLSISLVKSLTFE------KERW 1909
Query: 131 SELAKEETRELAKEKTREL 149
K+ ++ + +
Sbjct: 1910 LNTTKQFSKTSQELIGNCI 1928
Score = 27.5 bits (61), Expect = 5.9
Identities = 11/66 (16%), Positives = 22/66 (33%), Gaps = 3/66 (4%)
Query: 23 KEETSELAKEETSELAK-EETSELAKEKTSELAKEETSELAKEKTR--ELAKEETRELAK 79
++ E + L K E+ E L+ L EK R K+ ++ +
Sbjct: 1863 YQDLQENQRFVNVGLEKLNESVLKVNELNKTLSISLVKSLTFEKERWLNTTKQFSKTSQE 1922
Query: 80 EETSEL 85
+ +
Sbjct: 1923 LIGNCI 1928
Score = 27.5 bits (61), Expect = 6.8
Identities = 14/75 (18%), Positives = 26/75 (34%), Gaps = 7/75 (9%)
Query: 43 SELAKEKTSELAKEE---TSELAK-EKTRELAKEETRELAKEETSELAKEKTRELAKEET 98
+L K +L + + L K ++ E + L+ L EK R T
Sbjct: 1856 VKLVTAKYQDLQENQRFVNVGLEKLNESVLKVNELNKTLSISLVKSLTFEKERW---LNT 1912
Query: 99 SELAKEETSELAKEK 113
++ + + EL
Sbjct: 1913 TKQFSKTSQELIGNC 1927
Score = 27.5 bits (61), Expect = 7.4
Identities = 14/62 (22%), Positives = 22/62 (35%), Gaps = 5/62 (8%)
Query: 219 SELAKEKTRELAKEEETRELAKEKTRELAKEKTRELAKEETSELAKEETKKLAKEKTREL 278
+L K ++L + + + EK E + E L+ K L EK R L
Sbjct: 1856 VKLVTAKYQDLQENQRFVNVGLEKLNE-----SVLKVNELNKTLSISLVKSLTFEKERWL 1910
Query: 279 AK 280
Sbjct: 1911 NT 1912
>1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A
{Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 PDB: 2ylr_A*
2yls_A* 2ylt_A* 2ym1_A* 2ylw_A* 2ym2_A* 2ylx_A* 2ylz_A*
Length = 542
Score = 28.7 bits (65), Expect = 2.3
Identities = 18/98 (18%), Positives = 33/98 (33%), Gaps = 6/98 (6%)
Query: 147 RELAKEKTRELAK--EKTRELAKEKTRELAKEETSELAKEETRELAKEETSELAKEETSE 204
L E +L K + RE ++ + + + A E + E E +E +
Sbjct: 228 APLDPEFLADLKKRYAEFREESRNTPGGTHRYQGPKSALEVSDEELVETLERYWQEGGPD 287
Query: 205 LAKEE----TRELAKEETSELAKEKTRELAKEEETREL 238
+ A E +E + K R ++ E E
Sbjct: 288 ILAAYRDILRDRDANERVAEFIRNKIRNTVRDPEVAER 325
>2ddh_A Acyl-COA oxidase; beta barrel, alpha UP-DOWN bundle,
oxidoreductase; HET: FAD HXD; 2.07A {Rattus norvegicus}
SCOP: a.29.3.2 a.29.3.2 e.6.1.2 PDB: 1is2_A*
Length = 661
Score = 28.7 bits (64), Expect = 2.4
Identities = 16/79 (20%), Positives = 31/79 (39%), Gaps = 10/79 (12%)
Query: 84 ELAKEKTRELAKEETSELAK-----EETSELAKEKTRELAKEETRELAKEETSELAKEET 138
+L KE R A + E + +E + + + E+ + L + +
Sbjct: 4 DLRKE--RASATFNPELITHILDGSPENTRRRREIENLILNDP--DFQHEDYNFLTRSQR 59
Query: 139 RELAKEKTRELAKEKTREL 157
E+A +K+ + K K RE
Sbjct: 60 YEVAVKKSATMVK-KMREY 77
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 27.8 bits (61), Expect = 2.9
Identities = 12/70 (17%), Positives = 34/70 (48%)
Query: 213 LAKEETSELAKEKTRELAKEEETRELAKEKTRELAKEKTRELAKEETSELAKEETKKLAK 272
+A+ + E R+ +E+ R + ++ +++ RE AK++ E + +++++ K
Sbjct: 74 IAQADRLTQEPESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEK 133
Query: 273 EKTRELAKEE 282
K ++
Sbjct: 134 NKINNRIADK 143
>3lk5_A Geranylgeranyl pyrophosphate synthase; structural genomics, protein
structure initiative, geranylge pyrophosphate synthase;
1.90A {Corynebacterium glutamicum} PDB: 3qqv_A*
Length = 380
Score = 28.2 bits (63), Expect = 3.1
Identities = 12/78 (15%), Positives = 29/78 (37%)
Query: 113 KTRELAKEETRELAKEETSELAKEETRELAKEKTRELAKEKTRELAKEKTRELAKEKTRE 172
+ A +++ E A + + K + E T + E +++ +L +
Sbjct: 288 LALQRADKQSPEAATAIRAGVGKVTSPEDIAVITEHIRATGAEEEVEQRISQLTESGLAH 347
Query: 173 LAKEETSELAKEETRELA 190
L + + + + R LA
Sbjct: 348 LDDVDIPDEVRAQLRALA 365
>3nf2_A Putative polyprenyl synthetase; isoprenyl diphosphate synthase,
structural genomics, PSI, PR structure initiative,
nysgrc; 2.20A {Streptomyces coelicolor}
Length = 352
Score = 28.1 bits (63), Expect = 3.2
Identities = 9/82 (10%), Positives = 23/82 (28%)
Query: 109 LAKEKTRELAKEETRELAKEETSELAKEETRELAKEKTRELAKEKTRELAKEKTRELAKE 168
A ++ L + + + E + + + RE ++ R
Sbjct: 255 AALAAGGAASERLGEILTADAKASDFANFSEEEFAARAALIEEAGGREWTADEARRQHTI 314
Query: 169 KTRELAKEETSELAKEETRELA 190
L + + ++ LA
Sbjct: 315 AIEALDAVDMPDRVRDRFTALA 336
>3gdb_A Endo-D, putative uncharacterized protein SPR0440;
alpha-beta-barrels, cell WALL, peptidoglycan-anchor,
secreted, hydrolase; HET: PGE; 1.87A {Streptococcus
pneumoniae} PDB: 2xqx_A
Length = 937
Score = 28.0 bits (61), Expect = 3.9
Identities = 14/79 (17%), Positives = 21/79 (26%)
Query: 6 PSGPETLQPEERGDKSAKEETSELAKEETSELAKEETSELAKEKTSELAKEETSELAKEK 65
S + E E S EE + ET + S+ E E +
Sbjct: 71 ASETASPASNEAATTETAEAASAAKPEEKASEVVAETPSAEAKPKSDKETEAKPEATNQG 130
Query: 66 TRELAKEETRELAKEETSE 84
E + KE +
Sbjct: 131 DESKPAAEANKTEKEVQPD 149
>3iyk_A VP5; icosahedral virus; HET: MNA; 7.00A {Bluetongue virus}
Length = 526
Score = 28.0 bits (62), Expect = 4.1
Identities = 26/146 (17%), Positives = 58/146 (39%), Gaps = 7/146 (4%)
Query: 87 KEKTRELAKEETSELAKEETSELAKEKTRELAKEETRELAKEETSELAKEETRELAKEKT 146
+ K +EL E+ +EL + + ++ KEK + EE E A E + +
Sbjct: 96 QAKLKELEDEQRNELVRLKYNDKIKEKFGK-ELEEVYNFMNGE----ANAEIEDEKQFDI 150
Query: 147 RELAKEKTRELAKEKTRELAKEKTRELAKEETSELAKEETRELAKEETSELAKEETSELA 206
A ++ E+ ++ + ++E E ET + + A + E+
Sbjct: 151 LNKAVTSYNKILTEEDLQM--RRLATALQKEIGERTHAETVMVKEYRDKIDALKNAIEVE 208
Query: 207 KEETRELAKEETSELAKEKTRELAKE 232
++ +E A +E + + + ++E
Sbjct: 209 RDGMQEEAIQEIAGMTADVLEAASEE 234
Score = 28.0 bits (62), Expect = 4.1
Identities = 27/139 (19%), Positives = 57/139 (41%)
Query: 143 KEKTRELAKEKTRELAKEKTRELAKEKTRELAKEETSELAKEETRELAKEETSELAKEET 202
+ K +EL E+ EL + K + KEK + +E + + E E+ E+ ++ +
Sbjct: 96 QAKLKELEDEQRNELVRLKYNDKIKEKFGKELEEVYNFMNGEANAEIEDEKQFDILNKAV 155
Query: 203 SELAKEETRELAKEETSELAKEKTRELAKEEETRELAKEKTRELAKEKTRELAKEETSEL 262
+ K T E + A +K ET + + + + A + E+ ++ E
Sbjct: 156 TSYNKILTEEDLQMRRLATALQKEIGERTHAETVMVKEYRDKIDALKNAIEVERDGMQEE 215
Query: 263 AKEETKKLAKEKTRELAKE 281
A +E + + ++E
Sbjct: 216 AIQEIAGMTADVLEAASEE 234
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding,
nucleotide-binding, phosphorylation, acetylation,
alternative splicing, coiled coil; HET: GDP GTP; 4.00A
{Homo sapiens}
Length = 427
Score = 27.4 bits (60), Expect = 6.3
Identities = 23/140 (16%), Positives = 62/140 (44%), Gaps = 2/140 (1%)
Query: 63 KEKTRELAKEETR-ELAKEETSELAKEKTRELAKEETSELAKEETSELAKEKTRELAKEE 121
+E+T E R +E + ++ + +ET E + E ++K E+ +
Sbjct: 287 REQTHTRHYELYRRCKLEEMGFKDTDPDSKPFSLQETYEAKRNEFLGELQKKEEEMRQMF 346
Query: 122 TRELAKEETSELAKEETRELAKEKTRELAKEKTRELAKEKTRELAKEKTRELAKEETSEL 181
+ + ++E E+ ++ ++L +++ ++L ++K + L E ++ +EL
Sbjct: 347 VQRVKEKEAELKEAEKELHEKFDRLKKLHQDEKKKL-EDKKKSLDDEVNAFKQRKTAAEL 405
Query: 182 AKEETRELAKEETSELAKEE 201
+ + + +T + KE+
Sbjct: 406 LQSQGSQAGGSQTLKRDKEK 425
Score = 27.0 bits (59), Expect = 8.6
Identities = 24/141 (17%), Positives = 59/141 (41%), Gaps = 3/141 (2%)
Query: 135 KEETRELAKEKTR-ELAKEKTRELAKEKTRELAKEKTRELAKEETSELAKEETRELAKEE 193
+E+T E R +E + ++ + ++T E + E +++ E+ +
Sbjct: 287 REQTHTRHYELYRRCKLEEMGFKDTDPDSKPFSLQETYEAKRNEFLGELQKKEEEMRQMF 346
Query: 194 TSELAKEETSELAKEETRELAKEETSELAKEKTRELAKEEETRELAKEKTRELAKEKTRE 253
+ ++E E+ + +L +++ ++L E++ + L E ++ E
Sbjct: 347 VQRVKEKEAELKEAEKELHEKFDRLKKLHQDEKKKL--EDKKKSLDDEVNAFKQRKTAAE 404
Query: 254 LAKEETSELAKEETKKLAKEK 274
L + + S+ +T K KEK
Sbjct: 405 LLQSQGSQAGGSQTLKRDKEK 425
Score = 27.0 bits (59), Expect = 8.7
Identities = 20/129 (15%), Positives = 48/129 (37%), Gaps = 3/129 (2%)
Query: 159 KEKTRELAKEKTR-ELAKEETSELAKEETRELAKEETSELAKEETSELAKEETRELAKEE 217
+E+T E R +E + +++ + +ET E + E +++ E+ +
Sbjct: 287 REQTHTRHYELYRRCKLEEMGFKDTDPDSKPFSLQETYEAKRNEFLGELQKKEEEMRQMF 346
Query: 218 TSELAKEKTRELAKEEETRELAKEKTRELAKEKTR--ELAKEETSELAKEETKKLAKEKT 275
+ +++ E+E E + EK + + K E+ + +K A E
Sbjct: 347 VQRVKEKEAELKEAEKELHEKFDRLKKLHQDEKKKLEDKKKSLDDEVNAFKQRKTAAELL 406
Query: 276 RELAKEETN 284
+ +
Sbjct: 407 QSQGSQAGG 415
>2du3_A O-phosphoseryl-tRNA synthetase; alpha4 tetramer, ligase/RNA
complex; HET: SEP; 2.60A {Archaeoglobus fulgidus} PDB:
2du4_A 2du5_A* 2du6_A*
Length = 534
Score = 27.5 bits (61), Expect = 6.3
Identities = 21/126 (16%), Positives = 44/126 (34%), Gaps = 8/126 (6%)
Query: 72 EETRELAKEETSELAKEKTRELAKEETSELAKEETSELAKE----KTRELAKEETRELAK 127
++ RELA+++ K LA+ +EL KE T + +E +
Sbjct: 6 QKYRELAEKDFEAAWKAGKEILAERSPNELYPRVGFSFGKEHPLFATIQRLREAYLSIGF 65
Query: 128 EET----SELAKEETRELAKEKTRELAKEKTRELAKEKTRELAKEKTRELAKEETSELAK 183
E ++ +E L + + ++ EK R++ E+
Sbjct: 66 SEVVNPLIVEDVHVKKQFGREALAVLDRCFYLATLPKPNVGISAEKIRQIEAITKREVDS 125
Query: 184 EETREL 189
+ +E+
Sbjct: 126 KPLQEI 131
>1jil_A Tyrrs, tyrosyl-tRNA synthetase; truncation, based inhibitor design,
ligase; HET: 485; 2.20A {Staphylococcus aureus} SCOP:
c.26.1.1 PDB: 1jij_A* 1jii_A* 1jik_A*
Length = 420
Score = 27.1 bits (61), Expect = 6.9
Identities = 20/82 (24%), Positives = 32/82 (39%), Gaps = 9/82 (10%)
Query: 212 ELAKEETSELAKEKTRELAKEEETRELAKEKTR--------ELAKEKTRELAKEETSELA 263
L KEE L + K E + LA+E T+ A ++ L + L+
Sbjct: 273 FLGKEEIDRLEQSKNEAPHLREAQKTLAEEVTKFIHGEDALNDAIRISQALFSGDLKSLS 332
Query: 264 KEETKKLAKE-KTRELAKEETN 284
+E K K+ L+ + TN
Sbjct: 333 AKELKDGFKDVPQVTLSNDTTN 354
>2y8n_A 4-hydroxyphenylacetate decarboxylase large subuni; lyase, radical
chemistry, metalloenzyme, iron-sulfur center; 1.75A
{Clostridium scatologenes} PDB: 2yaj_A*
Length = 897
Score = 27.0 bits (59), Expect = 8.4
Identities = 12/71 (16%), Positives = 27/71 (38%), Gaps = 3/71 (4%)
Query: 204 ELAKEETRELAKE--ETSELAKEKTRELAKEEETRELAKEKTRELAKEKTRELAKEETSE 261
+L E+ E+ E + + + A +E + + ++ + LA ET
Sbjct: 241 KLCDEKIAEVMGEAGDDGDFGMSRGYYYAAMKEITKGLSAWCENYS-KRAKYLASIETDS 299
Query: 262 LAKEETKKLAK 272
K +K+ +
Sbjct: 300 EIKANYEKIEE 310
>2ts1_A Tyrosyl-tRNA synthetase; ligase (synthetase); 2.30A {Geobacillus
stearothermophilus} SCOP: c.26.1.1 PDB: 3ts1_A* 1tyd_E*
1tya_E* 1tyc_A 1tyb_E* 4ts1_A* 1jh3_A
Length = 419
Score = 26.8 bits (60), Expect = 9.1
Identities = 16/82 (19%), Positives = 29/82 (35%), Gaps = 9/82 (10%)
Query: 212 ELAKEETSELAKEKTRELAKEEETRELAKEKTR--------ELAKEKTRELAKEETSELA 263
L+KEE L +E K + LA+E T+ A + L + + L
Sbjct: 272 FLSKEEIEALEQELREAPEKRAAQKTLAEEVTKLVHGEEALRQAIRISEALFSGDIANLT 331
Query: 264 KEETKKLAKE-KTRELAKEETN 284
E ++ K+ + +
Sbjct: 332 AAEIEQGFKDVPSFVHEGGDVP 353
>2nn6_A Polymyositis/scleroderma autoantigen 1; RNA, exosome, PM/SCL,
phosphorolytic, hydrolase/transferase complex; 3.35A
{Homo sapiens} SCOP: d.14.1.4 d.101.1.1
Length = 358
Score = 26.9 bits (59), Expect = 9.2
Identities = 5/49 (10%), Positives = 15/49 (30%)
Query: 84 ELAKEKTRELAKEETSELAKEETSELAKEKTRELAKEETRELAKEETSE 132
++A K E+ + L ++ K + + + +
Sbjct: 269 KIAGVKVAEITELILKALENDQKVRKEGGKFGFAESIANQRITAFKMEK 317
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.286 0.108 0.242
Gapped
Lambda K H
0.267 0.0675 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,817,997
Number of extensions: 252078
Number of successful extensions: 1915
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1319
Number of HSP's successfully gapped: 502
Length of query: 284
Length of database: 6,701,793
Length adjustment: 93
Effective length of query: 191
Effective length of database: 4,105,140
Effective search space: 784081740
Effective search space used: 784081740
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 17 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 45 (21.8 bits)
S2: 57 (25.8 bits)