RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy16914
(284 letters)
>d1bjta_ e.11.1.1 (A:) DNA topoisomerase II, C-terminal fragment
(residues 410-1202) {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 760
Score = 33.3 bits (75), Expect = 0.039
Identities = 23/185 (12%), Positives = 48/185 (25%), Gaps = 10/185 (5%)
Query: 52 ELAKEETSELAKEKTRELAKEETRELAKEETSELAKEKTRELAKEETSELAKEETSELAK 111
E ++ +++ E+ K + + E T + EL K
Sbjct: 585 EYYQKRKDHMSERLQWEVEKYSFQVKFIKMIIEKELTVTNKPRNAIIQELENLGFPRFNK 644
Query: 112 EKTRELAKEETRELAKEETSELAKEETRELAKEKTRELAKEKTRELAKEKTRELAKEKTR 171
E + + A + + E L +
Sbjct: 645 EGKPYYGSPNDEIAEQINDVKGATSDEEDEESSHEDTENVINGPEELYGTYEYLLGMRIW 704
Query: 172 ELAKEETSELAKEETRELAKEETSELAKEETSELAKEETRELAKEETSELAKEKTRELAK 231
L KE +L ++ +E + E L K +++ + L +
Sbjct: 705 SLTKERYQKL-LKQKQEK---------ETELENLLKLSAKDIWNTDLKAFEVGYQEFLQR 754
Query: 232 EEETR 236
+ E R
Sbjct: 755 DAEAR 759
Score = 29.4 bits (65), Expect = 0.50
Identities = 19/132 (14%), Positives = 32/132 (24%), Gaps = 3/132 (2%)
Query: 135 KEETRELAKEKTRELAKEKTRELAKEKTRELAKEKTRELAKEETSELAKEETRELAKEET 194
+EL KE + + A + +
Sbjct: 628 NAIIQELENLGFPRFNKEGKPYYGSPNDEIAEQINDVKGATSDEEDEESSHEDTENVING 687
Query: 195 SELAKEETSELAKEETRELAKEETSELAKEKTRELAKEEETRELAKEKTRELAKEKTREL 254
E L L KE +L K+K KE E L K +++ +
Sbjct: 688 PEELYGTYEYLLGMRIWSLTKERYQKLLKQKQ---EKETELENLLKLSAKDIWNTDLKAF 744
Query: 255 AKEETSELAKEE 266
L ++
Sbjct: 745 EVGYQEFLQRDA 756
>d1fcqa_ c.1.8.9 (A:) Bee venom hyaluronidase {Honeybee (Apis
mellifera) [TaxId: 7460]}
Length = 321
Score = 31.8 bits (72), Expect = 0.085
Identities = 10/45 (22%), Positives = 19/45 (42%), Gaps = 3/45 (6%)
Query: 167 KEKTRELAKEETSELAKEETRELAKEETSELAK---EETSELAKE 208
K+ + E+ + E + + AK + + EET + AK
Sbjct: 121 KKLSVEVVRREHPFWDDQRVEQEAKRRFEKYGQLFMEETLKAAKR 165
Score = 31.8 bits (72), Expect = 0.090
Identities = 9/45 (20%), Positives = 20/45 (44%), Gaps = 3/45 (6%)
Query: 151 KEKTRELAKEKTRELAKEKTRELAKEETSELAK---EETRELAKE 192
K+ + E+ + + ++ + AK + + EET + AK
Sbjct: 121 KKLSVEVVRREHPFWDDQRVEQEAKRRFEKYGQLFMEETLKAAKR 165
Score = 30.2 bits (68), Expect = 0.23
Identities = 9/44 (20%), Positives = 19/44 (43%), Gaps = 3/44 (6%)
Query: 233 EETRELAKEKTRELAKEKTRELAKEETSELAK---EETKKLAKE 273
+ + E+ + + ++ + AK + + EET K AK
Sbjct: 122 KLSVEVVRREHPFWDDQRVEQEAKRRFEKYGQLFMEETLKAAKR 165
Score = 30.2 bits (68), Expect = 0.24
Identities = 10/45 (22%), Positives = 20/45 (44%), Gaps = 3/45 (6%)
Query: 71 KEETRELAKEETSELAKEKTRELAKEETSELAK---EETSELAKE 112
K+ + E+ + E ++ + AK + + EET + AK
Sbjct: 121 KKLSVEVVRREHPFWDDQRVEQEAKRRFEKYGQLFMEETLKAAKR 165
Score = 29.8 bits (67), Expect = 0.31
Identities = 9/45 (20%), Positives = 20/45 (44%), Gaps = 3/45 (6%)
Query: 240 KEKTRELAKEKTRELAKEETSELAKEETKKLAK---EKTRELAKE 281
K+ + E+ + + + + AK +K + E+T + AK
Sbjct: 121 KKLSVEVVRREHPFWDDQRVEQEAKRRFEKYGQLFMEETLKAAKR 165
Score = 29.8 bits (67), Expect = 0.33
Identities = 9/45 (20%), Positives = 21/45 (46%), Gaps = 3/45 (6%)
Query: 143 KEKTRELAKEKTRELAKEKTRELAKEKTRELAK---EETSELAKE 184
K+ + E+ + + ++ + AK + + + EET + AK
Sbjct: 121 KKLSVEVVRREHPFWDDQRVEQEAKRRFEKYGQLFMEETLKAAKR 165
Score = 29.4 bits (66), Expect = 0.42
Identities = 10/45 (22%), Positives = 19/45 (42%), Gaps = 3/45 (6%)
Query: 183 KEETRELAKEETSELAKEETSELAKEETRELAK---EETSELAKE 224
K+ + E+ + E + + AK + + EET + AK
Sbjct: 121 KKLSVEVVRREHPFWDDQRVEQEAKRRFEKYGQLFMEETLKAAKR 165
Score = 29.1 bits (65), Expect = 0.60
Identities = 10/45 (22%), Positives = 20/45 (44%), Gaps = 3/45 (6%)
Query: 63 KEKTRELAKEETRELAKEETSELAKEKTRELAK---EETSELAKE 104
K+ + E+ + E + + AK + + + EET + AK
Sbjct: 121 KKLSVEVVRREHPFWDDQRVEQEAKRRFEKYGQLFMEETLKAAKR 165
Score = 29.1 bits (65), Expect = 0.63
Identities = 9/45 (20%), Positives = 19/45 (42%), Gaps = 3/45 (6%)
Query: 111 KEKTRELAKEETRELAKEETSELAKEETRELAK---EKTRELAKE 152
K+ + E+ + E + + AK + + E+T + AK
Sbjct: 121 KKLSVEVVRREHPFWDDQRVEQEAKRRFEKYGQLFMEETLKAAKR 165
Score = 28.7 bits (64), Expect = 0.72
Identities = 10/45 (22%), Positives = 20/45 (44%), Gaps = 3/45 (6%)
Query: 87 KEKTRELAKEETSELAKEETSELAKEKTRELAK---EETRELAKE 128
K+ + E+ + E + + AK + + + EET + AK
Sbjct: 121 KKLSVEVVRREHPFWDDQRVEQEAKRRFEKYGQLFMEETLKAAKR 165
Score = 28.7 bits (64), Expect = 0.72
Identities = 10/45 (22%), Positives = 20/45 (44%), Gaps = 3/45 (6%)
Query: 47 KEKTSELAKEETSELAKEKTRELAKEETRELAK---EETSELAKE 88
K+ + E+ + E ++ + AK + + EET + AK
Sbjct: 121 KKLSVEVVRREHPFWDDQRVEQEAKRRFEKYGQLFMEETLKAAKR 165
Score = 28.3 bits (63), Expect = 0.94
Identities = 9/45 (20%), Positives = 19/45 (42%), Gaps = 3/45 (6%)
Query: 103 KEETSELAKEKTRELAKEETRELAKEETSELAK---EETRELAKE 144
K+ + E+ + + + + AK + + EET + AK
Sbjct: 121 KKLSVEVVRREHPFWDDQRVEQEAKRRFEKYGQLFMEETLKAAKR 165
Score = 27.1 bits (60), Expect = 2.7
Identities = 8/45 (17%), Positives = 21/45 (46%), Gaps = 3/45 (6%)
Query: 135 KEETRELAKEKTRELAKEKTRELAKEKTRELAK---EKTRELAKE 176
K+ + E+ + + ++ + AK + + + E+T + AK
Sbjct: 121 KKLSVEVVRREHPFWDDQRVEQEAKRRFEKYGQLFMEETLKAAKR 165
>d1h3fa1 c.26.1.1 (A:5-347) Tyrosyl-tRNA synthetase (TyrRS) {Thermus
thermophilus [TaxId: 274]}
Length = 343
Score = 30.3 bits (67), Expect = 0.25
Identities = 17/81 (20%), Positives = 27/81 (33%), Gaps = 7/81 (8%)
Query: 99 SELAKEETSELAKEKTRE----LAKEETRELAKEETSELAKEETRELAKEKTRELAKEKT 154
++L +EE L K LA+ T A + E A +
Sbjct: 266 TDLEEEEIEALLKAGPVPAHRVLARLLTAAYALPQIPPRIDRAFYESLGYA--WEAFGRD 323
Query: 155 RELAKEKTRELAKEKTRELAK 175
+E E+ R + E+AK
Sbjct: 324 KEAGPEEVRRAE-ARYDEVAK 343
Score = 29.6 bits (65), Expect = 0.48
Identities = 18/81 (22%), Positives = 29/81 (35%), Gaps = 8/81 (9%)
Query: 172 ELAKEETSELAKEETRE----LAKEETSELAKEETSELAKEETRELAKEETSELAKEKTR 227
+L +EE L K LA+ T+ A + E + A + +
Sbjct: 267 DLEEEEIEALLKAGPVPAHRVLARLLTAAYALPQIPPRIDRAFYESL--GYAWEAFGRDK 324
Query: 228 ELAKEEETRELAKEKTRELAK 248
E EE A+ + E+AK
Sbjct: 325 EAGPEE--VRRAEARYDEVAK 343
Score = 29.2 bits (64), Expect = 0.55
Identities = 18/80 (22%), Positives = 25/80 (31%), Gaps = 7/80 (8%)
Query: 76 ELAKEETSELAKEKTRE----LAKEETSELAKEETSELAKEKTRELAKEETRELAKEETS 131
+L +EE L K LA+ T+ A + E A
Sbjct: 267 DLEEEEIEALLKAGPVPAHRVLARLLTAAYALPQIPPRIDRAFYESL--GYAWEAFGRDK 324
Query: 132 ELAKEETRELAKEKTRELAK 151
E EE R + E+AK
Sbjct: 325 EAGPEEVRRAE-ARYDEVAK 343
Score = 27.6 bits (60), Expect = 1.7
Identities = 15/80 (18%), Positives = 22/80 (27%), Gaps = 3/80 (3%)
Query: 144 EKTRELAKEKTRELAKEKTRELAKEKTRELAKEETSELAKEETRELAKEETSELAKEETS 203
+ E + + R LA+ T A + E + A
Sbjct: 267 DLEEEEIEALLKAGPVPAHRVLARLLTAAYALPQIPPRIDRAFYESL--GYAWEAFGRDK 324
Query: 204 ELAKEETRELAKEETSELAK 223
E EE R E+AK
Sbjct: 325 EAGPEEVRRAE-ARYDEVAK 343
Score = 27.6 bits (60), Expect = 1.9
Identities = 17/81 (20%), Positives = 25/81 (30%), Gaps = 7/81 (8%)
Query: 51 SELAKEETSELAKEKTRE----LAKEETRELAKEETSELAKEKTRELAKEETSELAKEET 106
++L +EE L K LA+ T A + E + A
Sbjct: 266 TDLEEEEIEALLKAGPVPAHRVLARLLTAAYALPQIPPRIDRAFYESL--GYAWEAFGRD 323
Query: 107 SELAKEKTRELAKEETRELAK 127
E E+ R E+AK
Sbjct: 324 KEAGPEEVRRAE-ARYDEVAK 343
>d1taza_ a.211.1.2 (A:) Catalytic domain of cyclic nucleotide
phosphodiesterase 1b, PDE1B {Human (Homo sapiens)
[TaxId: 9606]}
Length = 357
Score = 28.5 bits (63), Expect = 0.84
Identities = 11/62 (17%), Positives = 25/62 (40%), Gaps = 2/62 (3%)
Query: 9 PETLQPEERGDKSAKEETSELAKEETSELAKEETSELAKEKTSELAKEETSELAKEKTRE 68
+++QP D +K + S ++ + ++ + + S K K+K +E
Sbjct: 296 EKSVQPLADEDSKSKNQPSFQWRQPSLDVEVGDPNPDVVSFRSTWVKRIQEN--KQKWKE 353
Query: 69 LA 70
A
Sbjct: 354 RA 355
>d1j2qh_ d.153.1.4 (H:) Proteasome beta subunit (catalytic)
{Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Length = 202
Score = 27.8 bits (61), Expect = 1.3
Identities = 10/62 (16%), Positives = 25/62 (40%)
Query: 43 SELAKEKTSELAKEETSELAKEKTRELAKEETRELAKEETSELAKEKTRELAKEETSELA 102
L T E+ +E ELA K ++ + ++ +++ + + EE ++
Sbjct: 138 GVLEDRFTPEIGVDEAVELAVRAIYSAMKRDSASGDGIDVVKITEDEFYQYSPEEVEQIL 197
Query: 103 KE 104
+
Sbjct: 198 AK 199
Score = 26.3 bits (57), Expect = 3.7
Identities = 10/60 (16%), Positives = 26/60 (43%)
Query: 69 LAKEETRELAKEETSELAKEKTRELAKEETSELAKEETSELAKEKTRELAKEETRELAKE 128
L T E+ +E ELA K +++ + ++ +++ + + EE ++ +
Sbjct: 140 LEDRFTPEIGVDEAVELAVRAIYSAMKRDSASGDGIDVVKITEDEFYQYSPEEVEQILAK 199
Score = 25.9 bits (56), Expect = 5.0
Identities = 11/60 (18%), Positives = 26/60 (43%)
Query: 165 LAKEKTRELAKEETSELAKEETRELAKEETSELAKEETSELAKEETRELAKEETSELAKE 224
L T E+ +E ELA K +++ + ++ ++E + + EE ++ +
Sbjct: 140 LEDRFTPEIGVDEAVELAVRAIYSAMKRDSASGDGIDVVKITEDEFYQYSPEEVEQILAK 199
Score = 25.2 bits (54), Expect = 7.8
Identities = 10/71 (14%), Positives = 26/71 (36%), Gaps = 8/71 (11%)
Query: 18 GDKSAKEETSELAKEETSELAKEETSELAKEKTSELAKEETS-----ELA---KEKTREL 69
+ L T E+ +E ELA K +++ ++ +++ +
Sbjct: 129 TGSGSLTAYGVLEDRFTPEIGVDEAVELAVRAIYSAMKRDSASGDGIDVVKITEDEFYQY 188
Query: 70 AKEETRELAKE 80
+ EE ++ +
Sbjct: 189 SPEEVEQILAK 199
>d1jila_ c.26.1.1 (A:) Tyrosyl-tRNA synthetase (TyrRS)
{Staphylococcus aureus [TaxId: 1280]}
Length = 323
Score = 27.4 bits (60), Expect = 2.2
Identities = 12/52 (23%), Positives = 24/52 (46%)
Query: 219 SELAKEKTRELAKEEETRELAKEKTRELAKEKTRELAKEETSELAKEETKKL 270
+ L KE+ L + + +E + LA+E T+ + E+ A ++ L
Sbjct: 271 TFLGKEEIDRLEQSKNEAPHLREAQKTLAEEVTKFIHGEDALNDAIRISQAL 322
>d1r9da_ c.7.1.1 (A:) Glycerol dehydratase DhaB1 {Clostridium
butyricum [TaxId: 1492]}
Length = 786
Score = 26.0 bits (57), Expect = 7.1
Identities = 12/66 (18%), Positives = 23/66 (34%), Gaps = 6/66 (9%)
Query: 84 ELAKEKTRELAKEETSELAKEETSELAKEKTRELAK------EETRELAKEETSELAKEE 137
AKE+ + + + KE+ ++ +E+A + K E
Sbjct: 181 NEAKEQLEKNRSIDPDFIKKEKFLNSVIISCEAAITYVNRYAKKAKEIADNTSDAKRKAE 240
Query: 138 TRELAK 143
E+AK
Sbjct: 241 LNEIAK 246
Score = 25.6 bits (56), Expect = 8.5
Identities = 24/151 (15%), Positives = 50/151 (33%), Gaps = 10/151 (6%)
Query: 132 ELAKEETRELAKEKTRELAKEKTRELAKEKTRELAKEKTRELAKEETSELAKEETRELAK 191
EL + R + E +KEK +++ + + E EET E + +
Sbjct: 96 ELDRLNKRTGDAFQISEESKEKLKDVFEYWNGKTTSELATSYMTEETREAVNCDVFTVGN 155
Query: 192 EETS----------ELAKEETSELAKEETRELAKEETSELAKEKTRELAKEEETRELAKE 241
+ ++ + + + E +L K + + K + A
Sbjct: 156 YYYNGVGHVSVDYGKVLRVGFNGIINEAKEQLEKNRSIDPDFIKKEKFLNSVIISCEAAI 215
Query: 242 KTRELAKEKTRELAKEETSELAKEETKKLAK 272
+K +E+A + K E ++AK
Sbjct: 216 TYVNRYAKKAKEIADNTSDAKRKAELNEIAK 246
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.286 0.108 0.242
Gapped
Lambda K H
0.267 0.0728 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 836,181
Number of extensions: 39348
Number of successful extensions: 307
Number of sequences better than 10.0: 1
Number of HSP's gapped: 250
Number of HSP's successfully gapped: 117
Length of query: 284
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 200
Effective length of database: 1,254,276
Effective search space: 250855200
Effective search space used: 250855200
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 17 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 45 (21.8 bits)
S2: 52 (23.8 bits)