Query psy16915
Match_columns 175
No_of_seqs 108 out of 225
Neff 7.0
Searched_HMMs 46136
Date Fri Aug 16 16:55:44 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16915.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/16915hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5243 HRD1 HRD ubiquitin lig 99.9 2.6E-25 5.6E-30 188.9 15.4 170 2-174 46-217 (491)
2 KOG0802|consensus 99.7 1.8E-16 3.9E-21 143.7 14.9 173 1-173 40-216 (543)
3 PF13705 TRC8_N: TRC8 N-termin 97.3 0.0064 1.4E-07 55.0 13.2 107 64-173 351-458 (508)
4 cd04904 ACT_AAAH ACT domain of 49.1 15 0.00033 24.2 2.1 37 138-174 14-50 (74)
5 cd04929 ACT_TPH ACT domain of 43.2 19 0.0004 24.1 1.8 36 138-173 14-49 (74)
6 cd04931 ACT_PAH ACT domain of 42.2 19 0.00041 25.1 1.8 37 137-173 27-63 (90)
7 cd04930 ACT_TH ACT domain of t 25.4 57 0.0012 23.7 2.1 37 137-173 54-90 (115)
8 PF06638 Strabismus: Strabismu 22.7 5.6E+02 0.012 23.7 8.2 70 89-160 160-229 (505)
9 PRK11899 prephenate dehydratas 20.9 66 0.0014 27.1 1.9 39 135-173 205-243 (279)
10 COG0077 PheA Prephenate dehydr 19.3 92 0.002 26.4 2.4 41 134-174 204-244 (279)
No 1
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=2.6e-25 Score=188.92 Aligned_cols=170 Identities=25% Similarity=0.416 Sum_probs=142.0
Q ss_pred hhHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHhHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHHHHhhhhhh
Q psy16915 2 IYIQALILVILAGKLVKKIFFGQLRAAEFEHLMERSWYAVTETCLAFTVFKDDFSPKFVALFTLLLFLKAFHWLTEDRVD 81 (175)
Q Consensus 2 ~~n~~~~~~~l~~k~l~~lfFG~LR~~E~e~l~er~~~~v~~~~l~~~if~~~~~~~~~~~f~~l~~lK~fhwl~~dR~e 81 (175)
.-|.++++..++|+++++++||+||..|.||++||+|++++|++++.++||++++..+..+++.|+++|+|||++++|.|
T Consensus 46 ~~~~ill~~~l~~~~l~~llFGsLr~~E~e~~~E~l~~tlt~~ll~iS~F~e~i~fs~~~l~~~Ll~~kvfhwil~~R~e 125 (491)
T COG5243 46 GLNVILLLFFLIANALKTLLFGSLRTFELELLYEQLWITLTEILLAISVFREAISFSFFMLLSTLLFAKVFHWILSFRTE 125 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcCCCccHHH--HHHHHHHHHHHHHHHHHHHHHHHHHhhccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcc
Q psy16915 82 FMERSPMISYIF--HIRIIVLLTVLGLLDLYFVVGAYQTTVTKGASVMIVFGFEYAILLTVCVNILIKYALHTIDLNREI 159 (175)
Q Consensus 82 ~l~~sp~~~~~~--h~R~~~ll~~l~~~D~~li~~~~~~~~~~g~~~~llf~fE~~il~~~~~~~~~ky~l~~~dl~~~~ 159 (175)
... ..+++..+ .+|+.+++.++.++|..++..|+.+...-..+...++..||-.+........-|-.+..+|.++++
T Consensus 126 r~~-~~st~~~~~ifSrfS~~~~lL~ild~~li~~CiSs~~liD~~~lfL~~c~F~~~ll~l~s~~n~~cV~n~~~~ddD 204 (491)
T COG5243 126 RLQ-IQSTDQRFHIFSRFSCAYFLLSILDASLIYLCISSEHLIDKSTLFLFVCEFSVLLLNLTSEANKLCVYNYEARDDD 204 (491)
T ss_pred HHH-HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhHhhhhhhHHHHHHHHHHHHHHHHHHhhcccceeeccccccc
Confidence 542 23334444 459999999999999999999998754433344445555777766666666556777777777766
Q ss_pred ccccceeeeeeeeec
Q psy16915 160 FWESKAVFFLYMELV 174 (175)
Q Consensus 160 ~We~K~~~~~y~el~ 174 (175)
++|++|.||.|+.
T Consensus 205 --d~rs~~~f~~~v~ 217 (491)
T COG5243 205 --DERSTYLFRLEVC 217 (491)
T ss_pred --ccceeeeeeeehH
Confidence 8899999999963
No 2
>KOG0802|consensus
Probab=99.71 E-value=1.8e-16 Score=143.75 Aligned_cols=173 Identities=27% Similarity=0.410 Sum_probs=154.2
Q ss_pred ChhHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHhHH-HHHHHHHHHH--HhcCCcchhHHHHHHHHHHHHHHHHHHhh
Q psy16915 1 VIYIQALILVILAGKLVKKIFFGQLRAAEFEHLMERSW-YAVTETCLAF--TVFKDDFSPKFVALFTLLLFLKAFHWLTE 77 (175)
Q Consensus 1 ~~~n~~~~~~~l~~k~l~~lfFG~LR~~E~e~l~er~~-~~v~~~~l~~--~if~~~~~~~~~~~f~~l~~lK~fhwl~~ 77 (175)
+++|++++......+.++.++||.||..|.||+.|++| +.+.+..+.. +.++...+..|..|+.+++++|+|||+++
T Consensus 40 ~l~~~~l~~~~~~~~sl~~~~~g~l~~~~~e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~l~~ 119 (543)
T KOG0802|consen 40 VLLNRALVVLALILLSLQLIFFGALLLSEAEHLSHSLWNLIGLKYTFLLGYVTFRTVLSELFSLWLLLLLFLHVFHLLAS 119 (543)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 47899999999999999999999999999999999999 6677777666 77888777789999999999999999999
Q ss_pred hhhhhhhcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-ccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q psy16915 78 DRVDFMERSPMISYIFHIRIIVLLTVLGLLDLYFVVGAYQTTV-TKGASVMIVFGFEYAILLTVCVNILIKYALHTIDLN 156 (175)
Q Consensus 78 dR~e~l~~sp~~~~~~h~R~~~ll~~l~~~D~~li~~~~~~~~-~~g~~~~llf~fE~~il~~~~~~~~~ky~l~~~dl~ 156 (175)
||+++++.+|..+...|.|+.+.+..+...|...+..++.... ..|.+..+.+.+|.+.+.........+|.++.-+-.
T Consensus 120 ~~~~~l~~~~~~~~~~~~~v~~~~~~l~~~~~~~~~~s~~~~~~t~~~~~l~~~~~~~~~~~~~~~~~~~~y~l~~~~~~ 199 (543)
T KOG0802|consen 120 DRLPRLFFSPLITTLNHFRVVSVLFALLIVDGHLVYNSLKTAYRTYGLSMLIELTFPSLLVVFWTALVILQYVLHSTADH 199 (543)
T ss_pred hHHHHHHhCcchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhheeccchHHHHHHHHHHHHHHHHHHhcchhh
Confidence 9999999999988899999999999999999998887777766 677888888999999999999999999999998734
Q ss_pred Cccccccceeeeeeeee
Q psy16915 157 REIFWESKAVFFLYMEL 173 (175)
Q Consensus 157 ~~~~We~K~~~~~y~el 173 (175)
...+||.|..+.++.+.
T Consensus 200 ~~~~~~~~~~l~~~~~~ 216 (543)
T KOG0802|consen 200 IHIRSEDLSLLTFTLII 216 (543)
T ss_pred cCcccCccceeechhHH
Confidence 44566999999988664
No 3
>PF13705 TRC8_N: TRC8 N-terminal domain
Probab=97.32 E-value=0.0064 Score=55.00 Aligned_cols=107 Identities=18% Similarity=0.247 Sum_probs=81.9
Q ss_pred HHHHHHHHHHHHhhhhhhhhhcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChhh-HHHHHHHHHHHHHHHH
Q psy16915 64 TLLLFLKAFHWLTEDRVDFMERSPMISYIFHIRIIVLLTVLGLLDLYFVVGAYQTTVTKGASV-MIVFGFEYAILLTVCV 142 (175)
Q Consensus 64 ~~l~~lK~fhwl~~dR~e~l~~sp~~~~~~h~R~~~ll~~l~~~D~~li~~~~~~~~~~g~~~-~llf~fE~~il~~~~~ 142 (175)
.+-..++..|=+..-.+-.+..|++.++..|.|-.+.-..+.+.-..+...... .. ..++ .+....-+....+.++
T Consensus 351 v~ta~Lh~~~ei~~pvLmsL~As~~~s~~rH~R~L~v~~~Ll~~P~~~~y~l~~-~~--~i~tWll~v~s~~~~t~vkv~ 427 (508)
T PF13705_consen 351 VLTALLHSLHEIVDPVLMSLSASHNRSFWRHFRALSVCLFLLVFPLYLSYYLWS-FF--PIDTWLLIVTSFCVETIVKVL 427 (508)
T ss_pred HHHHHHHHHHHHhHHHHHhccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHH-hC--ChHHHHHHHHHHHHHHHHHHH
Confidence 455677888888888888888899999999999988888888777655443322 22 2333 3333344555677799
Q ss_pred HHHHHHHHHHhhcCCccccccceeeeeeeee
Q psy16915 143 NILIKYALHTIDLNREIFWESKAVFFLYMEL 173 (175)
Q Consensus 143 ~~~~ky~l~~~dl~~~~~We~K~~~~~y~el 173 (175)
.+...|++.++|.+++++||+=-.|+||++-
T Consensus 428 ~sl~iY~Lf~vd~~~~~~WE~LDD~VYyv~a 458 (508)
T PF13705_consen 428 GSLAIYILFMVDARREEPWEKLDDYVYYVRA 458 (508)
T ss_pred HHHHHHHHHHHHhhcccchhhcccEEEEEec
Confidence 9999999999999999999999999999864
No 4
>cd04904 ACT_AAAH ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe; TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines; and TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxy
Probab=49.12 E-value=15 Score=24.22 Aligned_cols=37 Identities=3% Similarity=0.196 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHhhcCCccccccceeeeeeeeec
Q psy16915 138 LTVCVNILIKYALHTIDLNREIFWESKAVFFLYMELV 174 (175)
Q Consensus 138 ~~~~~~~~~ky~l~~~dl~~~~~We~K~~~~~y~el~ 174 (175)
+.++++.+.++.+|+-.+.+.+.=.++..|.||+|+-
T Consensus 14 L~~vL~~f~~~~iNlt~IeSRP~~~~~~~y~Ffvd~~ 50 (74)
T cd04904 14 LARALKLFEEFGVNLTHIESRPSRRNGSEYEFFVDCE 50 (74)
T ss_pred HHHHHHHHHHCCCcEEEEECCCCCCCCceEEEEEEEE
Confidence 4567888888888887776555555566899999973
No 5
>cd04929 ACT_TPH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxytryptamine (serotonin) and the first reaction in the synthesis of melatonin. Very little is known about the role of the ACT domain in TPH, which appears to be regulated by phosphorylation but not by its substrate or cofactor. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=43.23 E-value=19 Score=24.09 Aligned_cols=36 Identities=6% Similarity=0.251 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHhhcCCccccccceeeeeeeee
Q psy16915 138 LTVCVNILIKYALHTIDLNREIFWESKAVFFLYMEL 173 (175)
Q Consensus 138 ~~~~~~~~~ky~l~~~dl~~~~~We~K~~~~~y~el 173 (175)
+.+++..+.++.+|+--+.+.+.=.++..|.||+|+
T Consensus 14 L~~iL~~f~~~~inl~~IeSRP~~~~~~~y~F~id~ 49 (74)
T cd04929 14 LAKALKLFQELGINVVHIESRKSKRRSSEFEIFVDC 49 (74)
T ss_pred HHHHHHHHHHCCCCEEEEEeccCCCCCceEEEEEEE
Confidence 457788888888888776554444455679999996
No 6
>cd04931 ACT_PAH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe. In PAH, an autoregulatory sequence, N-terminal of the ACT domain, extends across the catalytic domain active site and regulates the enzyme by intrasteric regulation. It appears that the activation by L-Phe induces a conformational change that converts the enzyme to a high-affinity and high-activity state. Modulation of activity is achieved through inhibition by BH4 and activation by phosphorylation of serine residues of the autoregulatory region. The molecular basis for the cooperative activation process is not fully understood yet. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=42.23 E-value=19 Score=25.13 Aligned_cols=37 Identities=8% Similarity=0.172 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHhhcCCccccccceeeeeeeee
Q psy16915 137 LLTVCVNILIKYALHTIDLNREIFWESKAVFFLYMEL 173 (175)
Q Consensus 137 l~~~~~~~~~ky~l~~~dl~~~~~We~K~~~~~y~el 173 (175)
.+.++++.+.++.+|+--+.+...=.++..|.||+|+
T Consensus 27 sL~~vL~~Fa~~~INLt~IeSRP~~~~~~~Y~FfVDi 63 (90)
T cd04931 27 ALAKVLRLFEEKDINLTHIESRPSRLNKDEYEFFINL 63 (90)
T ss_pred HHHHHHHHHHHCCCCEEEEEeccCCCCCceEEEEEEE
Confidence 3567888888998888777555444455679999996
No 7
>cd04930 ACT_TH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH). ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH). TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines (dopamine, noradrenaline and adrenaline), functioning as hormones and neurotransmitters. The enzyme is not regulated by its amino acid substrate, but instead by phosphorylation at several serine residues located N-terminal of the ACT domain, and by feedback inhibition by catecholamines at the active site. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=25.45 E-value=57 Score=23.74 Aligned_cols=37 Identities=5% Similarity=0.038 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHhhcCCccccccceeeeeeeee
Q psy16915 137 LLTVCVNILIKYALHTIDLNREIFWESKAVFFLYMEL 173 (175)
Q Consensus 137 l~~~~~~~~~ky~l~~~dl~~~~~We~K~~~~~y~el 173 (175)
-+.+++..+.++.+|+--+-+.+.=+.+..|.||+|+
T Consensus 54 sL~~iL~~Fa~~gINLt~IESRP~~~~~~eY~FfIdi 90 (115)
T cd04930 54 SLSRILKVFETFEAKIHHLESRPSRKEGGDLEVLVRC 90 (115)
T ss_pred HHHHHHHHHHHCCCCEEEEECCcCCCCCceEEEEEEE
Confidence 4567888888888888776554444455579999986
No 8
>PF06638 Strabismus: Strabismus protein; InterPro: IPR009539 This family consists of several strabismus (STB) or Van Gogh-like (VANGL) proteins 1 and 2. The exact function of this family is unknown. It is thought, however that STB1 gene and STB2 may be potent tumour suppressor gene candidates [].; GO: 0007275 multicellular organismal development, 0016021 integral to membrane
Probab=22.69 E-value=5.6e+02 Score=23.71 Aligned_cols=70 Identities=17% Similarity=0.178 Sum_probs=45.5
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccc
Q psy16915 89 ISYIFHIRIIVLLTVLGLLDLYFVVGAYQTTVTKGASVMIVFGFEYAILLTVCVNILIKYALHTIDLNREIF 160 (175)
Q Consensus 89 ~~~~~h~R~~~ll~~l~~~D~~li~~~~~~~~~~g~~~~llf~fE~~il~~~~~~~~~ky~l~~~dl~~~~~ 160 (175)
.|+.+-.|.+.+.++++++=.+|+-|.+.-.-.+..+..- ..+|+.-+++++--+==-++-+.|+|+.+|
T Consensus 160 lPRif~fRa~ll~Lvfl~~~syWLFY~vrIl~~~~~dy~~--IV~yA~SlvDaLLFiHYlavvLLElR~lqp 229 (505)
T PF06638_consen 160 LPRIFVFRALLLVLVFLFLFSYWLFYGVRILDPRESDYQG--IVSYAVSLVDALLFIHYLAVVLLELRHLQP 229 (505)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHhhheeeechhhhHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 4888888998887777777777787777655433333322 246777777766554323577788877544
No 9
>PRK11899 prephenate dehydratase; Provisional
Probab=20.91 E-value=66 Score=27.12 Aligned_cols=39 Identities=10% Similarity=0.077 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCccccccceeeeeeeee
Q psy16915 135 AILLTVCVNILIKYALHTIDLNREIFWESKAVFFLYMEL 173 (175)
Q Consensus 135 ~il~~~~~~~~~ky~l~~~dl~~~~~We~K~~~~~y~el 173 (175)
...+.++++.+.+..+|+-.+.+.+.=.+...|.||+|+
T Consensus 205 pGaL~~vL~~Fa~~gINLtkIeSRP~~~~~~~Y~F~id~ 243 (279)
T PRK11899 205 PAALYKALGGFATNGVNMTKLESYMVGGSFTATQFYADI 243 (279)
T ss_pred CChHHHHHHHHHHcCCCeeeEEeeecCCCCceEEEEEEE
Confidence 356778999999999999887655444445589999997
No 10
>COG0077 PheA Prephenate dehydratase [Amino acid transport and metabolism]
Probab=19.28 E-value=92 Score=26.45 Aligned_cols=41 Identities=5% Similarity=0.175 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCccccccceeeeeeeeec
Q psy16915 134 YAILLTVCVNILIKYALHTIDLNREIFWESKAVFFLYMELV 174 (175)
Q Consensus 134 ~~il~~~~~~~~~ky~l~~~dl~~~~~We~K~~~~~y~el~ 174 (175)
-...+.+++..+.+..+|+--+-+.+.-.+-+.|+||+|+-
T Consensus 204 ~PGaL~~~L~~Fa~~gINlTkIESRP~k~~~~~Y~F~iD~e 244 (279)
T COG0077 204 KPGALYKALGVFAKRGINLTKIESRPLKTGLGEYLFFIDIE 244 (279)
T ss_pred CCchHHHHHHHHHHcCcceeeEeecccCCCCeeEEEEEEEe
Confidence 44567788999999999987765555555666999999973
Done!