Query psy16915
Match_columns 175
No_of_seqs 108 out of 225
Neff 7.0
Searched_HMMs 29240
Date Fri Aug 16 16:56:16 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16915.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/16915hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ls4_A High affinity copper up 23.0 26 0.0009 18.1 0.0 24 3-26 1-24 (26)
2 3luy_A Probable chorismate mut 12.5 62 0.0021 26.8 0.9 37 137-173 221-257 (329)
3 3tq7_B Microtubule-associated 12.2 37 0.0013 22.5 -0.5 11 20-30 26-36 (82)
4 2k5k_A Uncharacterized protein 11.8 49 0.0017 21.3 0.0 16 157-172 49-64 (70)
5 4es1_A BH0342 protein; ferredo 11.2 55 0.0019 22.3 0.1 21 21-41 43-63 (100)
6 2i5u_A DNAD domain protein; st 11.2 3.3E+02 0.011 17.2 4.4 14 22-35 13-26 (83)
7 2qmw_A PDT, prephenate dehydra 11.0 61 0.0021 25.9 0.4 36 138-173 203-238 (267)
8 3twe_A Alpha4H; unknown functi 10.6 1.5E+02 0.0051 14.9 1.6 12 28-39 8-19 (27)
9 3mwb_A Prephenate dehydratase; 10.4 64 0.0022 26.5 0.3 38 136-173 214-251 (313)
10 2i0x_A Hypothetical protein PF 10.2 1.2E+02 0.0039 19.8 1.5 23 18-40 29-52 (85)
No 1
>2ls4_A High affinity copper uptake protein 1; HCTR1 TMDS, oligomerization, metal transport; NMR {Homo sapiens}
Probab=22.97 E-value=26 Score=18.15 Aligned_cols=24 Identities=21% Similarity=0.263 Sum_probs=20.5
Q ss_pred hHHHHHHHHHHHHHHHHhccccCc
Q psy16915 3 YIQALILVILAGKLVKKIFFGQLR 26 (175)
Q Consensus 3 ~n~~~~~~~l~~k~l~~lfFG~LR 26 (175)
||--+++.+++|-.+=+.+||.-|
T Consensus 1 YNg~l~iavvlGa~~Gyf~F~~~~ 24 (26)
T 2ls4_A 1 YNGYLCIAVAAGAGTGYFLFSWKK 24 (26)
Confidence 688889999999999999998654
No 2
>3luy_A Probable chorismate mutase; structural genomics, APC38059, 3-phenylp PSI-2, protein structure initiative; HET: PPY; 2.00A {Bifidobacterium adolescentis}
Probab=12.51 E-value=62 Score=26.77 Aligned_cols=37 Identities=8% Similarity=0.143 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHhhcCCccccccceeeeeeeee
Q psy16915 137 LLTVCVNILIKYALHTIDLNREIFWESKAVFFLYMEL 173 (175)
Q Consensus 137 l~~~~~~~~~ky~l~~~dl~~~~~We~K~~~~~y~el 173 (175)
.+.+++..+.+..+|+--+.+...=.+...|.||+|+
T Consensus 221 aL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~FfiD~ 257 (329)
T 3luy_A 221 VLANLLDVFRDAGLNMTSFISRPIKGRTGTYSFIVTL 257 (329)
T ss_dssp HHHHHHHHHHHTTCCEEEEEEEEETTEEEEEEEEEEE
T ss_pred HHHHHHHHHHHCCcceEEEEeeECCCCCccEEEEEEE
Confidence 4568888888999988776554444455689999997
No 3
>3tq7_B Microtubule-associated protein RP/EB family membe; CAP-Gly domain, protein-protein interaction, microtubule BIN cytoskeleton, protein binding; 2.30A {Homo sapiens} SCOP: a.245.1.1
Probab=12.19 E-value=37 Score=22.48 Aligned_cols=11 Identities=36% Similarity=0.854 Sum_probs=9.1
Q ss_pred hccccCcHHHH
Q psy16915 20 IFFGQLRAAEF 30 (175)
Q Consensus 20 lfFG~LR~~E~ 30 (175)
..||+||.+|.
T Consensus 26 FYF~KLRdIEi 36 (82)
T 3tq7_B 26 FYFSKLRDIEL 36 (82)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 57899999886
No 4
>2k5k_A Uncharacterized protein RHR2; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Rhodobacter sphaeroides 2}
Probab=11.79 E-value=49 Score=21.26 Aligned_cols=16 Identities=31% Similarity=0.474 Sum_probs=9.9
Q ss_pred Cccccccceeeeeeee
Q psy16915 157 REIFWESKAVFFLYME 172 (175)
Q Consensus 157 ~~~~We~K~~~~~y~e 172 (175)
+.++||.|+.-+-++|
T Consensus 49 RYGDWE~kG~a~~~~~ 64 (70)
T 2k5k_A 49 RFGDWEKKGIAIDFLE 64 (70)
T ss_dssp SCCCCCCCSTTCCC--
T ss_pred ccccchhcceeehhhh
Confidence 3478999987654443
No 5
>4es1_A BH0342 protein; ferredoxin, nuclease, hydrolase; 1.10A {Bacillus halodurans} PDB: 4es2_A 4es3_A
Probab=11.16 E-value=55 Score=22.26 Aligned_cols=21 Identities=10% Similarity=0.009 Sum_probs=17.3
Q ss_pred ccccCcHHHHHHHHHhHHHHH
Q psy16915 21 FFGQLRAAEFEHLMERSWYAV 41 (175)
Q Consensus 21 fFG~LR~~E~e~l~er~~~~v 41 (175)
|-|+|++.+.+.++.++...+
T Consensus 43 Fe~~lt~~~~~~L~~~l~~~i 63 (100)
T 4es1_A 43 FECIVDSTQLTSLKLELTSLI 63 (100)
T ss_dssp EEEEECHHHHHHHHHHHHHHS
T ss_pred EEEEcCHHHHHHHHHHHHhhc
Confidence 449999999999999876544
No 6
>2i5u_A DNAD domain protein; structural genomics, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG, U function; HET: MSE; 1.50A {Enterococcus faecalis} SCOP: a.275.1.1
Probab=11.15 E-value=3.3e+02 Score=17.17 Aligned_cols=14 Identities=14% Similarity=0.320 Sum_probs=12.4
Q ss_pred cccCcHHHHHHHHH
Q psy16915 22 FGQLRAAEFEHLME 35 (175)
Q Consensus 22 FG~LR~~E~e~l~e 35 (175)
||.|++.|.|.+.+
T Consensus 13 ~g~ls~~e~e~i~~ 26 (83)
T 2i5u_A 13 FGLMSSKTMTDFDY 26 (83)
T ss_dssp SCSCCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHH
Confidence 59999999999876
No 7
>2qmw_A PDT, prephenate dehydratase; APC85812, prephenate dehydratase (PDT), staphylococcus aureu aureus MU50, structural genomics, PSI-2; 2.30A {Staphylococcus aureus subsp} SCOP: c.94.1.1 d.58.18.3
Probab=10.99 E-value=61 Score=25.95 Aligned_cols=36 Identities=6% Similarity=0.180 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHhhcCCccccccceeeeeeeee
Q psy16915 138 LTVCVNILIKYALHTIDLNREIFWESKAVFFLYMEL 173 (175)
Q Consensus 138 ~~~~~~~~~ky~l~~~dl~~~~~We~K~~~~~y~el 173 (175)
+.+++..+.+..+|+--+-+...=.+...|.||+|+
T Consensus 203 L~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~FfiD~ 238 (267)
T 2qmw_A 203 LASVLNTFALFNINLSWIESRPLKTQLGMYRFFVQA 238 (267)
T ss_dssp HHHHHHHHHTTTCCEEEEEEEECSSSTTCEEEEEEE
T ss_pred HHHHHHHHHHcCCCeeEEEEeecCCCCccEEEEEEE
Confidence 457778888888888766544433444579999996
No 8
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=10.57 E-value=1.5e+02 Score=14.94 Aligned_cols=12 Identities=42% Similarity=0.410 Sum_probs=8.9
Q ss_pred HHHHHHHHhHHH
Q psy16915 28 AEFEHLMERSWY 39 (175)
Q Consensus 28 ~E~e~l~er~~~ 39 (175)
-|.|.++||++.
T Consensus 8 keledlqerlrk 19 (27)
T 3twe_A 8 KELEDLQERLRK 19 (27)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 477888888764
No 9
>3mwb_A Prephenate dehydratase; L-Phe, PSI, MCSG, structural genomics, midwest center for ST genomics, protein structure initiative, lyase; HET: MSE PHE; 2.00A {Arthrobacter aurescens}
Probab=10.43 E-value=64 Score=26.48 Aligned_cols=38 Identities=5% Similarity=0.037 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCccccccceeeeeeeee
Q psy16915 136 ILLTVCVNILIKYALHTIDLNREIFWESKAVFFLYMEL 173 (175)
Q Consensus 136 il~~~~~~~~~ky~l~~~dl~~~~~We~K~~~~~y~el 173 (175)
..+.+++..+.+..+|+--+-+...=++...|.||+|+
T Consensus 214 GaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~FfiD~ 251 (313)
T 3mwb_A 214 GALMEILDQFASRGVNLSRIESRPTGQYLGHYFFSIDA 251 (313)
T ss_dssp THHHHHHHHHHTTTCCEEEEEEEECSSSTTSEEEEEEE
T ss_pred CHHHHHHHHHHHCCccEEEEEEeecCCCCccEEEEEEE
Confidence 34567888888888888666444333344479999997
No 10
>2i0x_A Hypothetical protein PF1117; PSI, STRU genomics, southeast collaboratory for structural genomics, structure initiative, secsg; 2.70A {Pyrococcus furiosus} SCOP: d.58.58.1
Probab=10.25 E-value=1.2e+02 Score=19.76 Aligned_cols=23 Identities=30% Similarity=0.421 Sum_probs=18.3
Q ss_pred HHhcc-ccCcHHHHHHHHHhHHHH
Q psy16915 18 KKIFF-GQLRAAEFEHLMERSWYA 40 (175)
Q Consensus 18 ~~lfF-G~LR~~E~e~l~er~~~~ 40 (175)
|+-+| |+|++.|.+.+.+++...
T Consensus 29 Q~SVFeg~lt~~~~~~L~~~l~~~ 52 (85)
T 2i0x_A 29 QNSVFEGEVTLAEFERIKEGLKKI 52 (85)
T ss_dssp ETTEEEEECCHHHHHHHHHHHHHS
T ss_pred ceeEEEEECCHHHHHHHHHHHHHh
Confidence 44455 999999999999987653
Done!