RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy16915
         (175 letters)



>gnl|CDD|227568 COG5243, HRD1, HRD ubiquitin ligase complex, ER membrane component
           [Posttranslational modification, protein turnover,
           chaperones].
          Length = 491

 Score = 74.6 bits (183), Expect = 3e-16
 Identities = 41/136 (30%), Positives = 64/136 (47%), Gaps = 3/136 (2%)

Query: 7   LILVILAGKLVKKIFFGQLRAAEFEHLMERSWYAVTETCLAFTVFKDDFSPKFVALFTLL 66
           L+L  L    +K + FG LR  E E L E+ W  +TE  LA +VF++  S  F  L + L
Sbjct: 51  LLLFFLIANALKTLLFGSLRTFELELLYEQLWITLTEILLAISVFREAISFSFFMLLSTL 110

Query: 67  LFLKAFHWLTEDRV--DFMERSPMISYIFHIRIIVLLTVLGLLDLYFVVGAYQTTVTKGA 124
           LF K FHW+   R     ++ +    +IF  R      +L +LD   +     +      
Sbjct: 111 LFAKVFHWILSFRTERLQIQSTDQRFHIFS-RFSCAYFLLSILDASLIYLCISSEHLIDK 169

Query: 125 SVMIVFGFEYAILLTV 140
           S + +F  E+++LL  
Sbjct: 170 STLFLFVCEFSVLLLN 185


>gnl|CDD|180413 PRK06128, PRK06128, oxidoreductase; Provisional.
          Length = 300

 Score = 28.7 bits (64), Expect = 1.6
 Identities = 11/40 (27%), Positives = 18/40 (45%)

Query: 8   ILVILAGKLVKKIFFGQLRAAEFEHLMERSWYAVTETCLA 47
           ILV +AGK         +   +F+   + + YA+   C A
Sbjct: 137 ILVNIAGKQTAVKDIADITTEQFDATFKTNVYAMFWLCKA 176


>gnl|CDD|213289 cd05922, FACL_like_6, Uncharacterized subfamily of fatty acid CoA
           ligase (FACL).  Fatty acyl-CoA ligases catalyze the
           ATP-dependent activation of fatty acids in a two-step
           reaction. The carboxylate substrate first reacts with
           ATP to form an acyl-adenylate intermediate, which then
           reacts with CoA to produce an acyl-CoA ester. This is a
           required step before free fatty acids can participate in
           most catabolic and anabolic reactions.
          Length = 350

 Score = 27.2 bits (61), Expect = 5.3
 Identities = 8/33 (24%), Positives = 14/33 (42%), Gaps = 2/33 (6%)

Query: 102 TVLGLLDLYFVVGAYQ--TTVTKGASVMIVFGF 132
            +L +L   F  G  Q  T    G ++++   F
Sbjct: 45  RILAVLPFSFDYGLSQLLTAFRVGGTLVLESRF 77


>gnl|CDD|239808 cd04281, ZnMc_BMP1_TLD, Zinc-dependent metalloprotease;
          BMP1/TLD-like subfamily. BMP1 (Bone morphogenetic
          protein 1) and TLD (tolloid)-like metalloproteases play
          vital roles in extracellular matrix formation, by
          cleaving precursor proteins such as enzymes, structural
          proteins, and proteins involved in the mineralization
          of the extracellular matrix. The drosophila protein
          tolloid and its Xenopus homologue xolloid cleave and
          inactivate Sog and chordin, respectively, which are
          inhibitors of Dpp (the Drosophila decapentaplegic gene
          product) and its homologue BMP4, involved in
          dorso-ventral patterning.
          Length = 200

 Score = 26.3 bits (58), Expect = 9.1
 Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 2/32 (6%)

Query: 67 LFLKAF-HWLTEDRVDFMERSPMISYI-FHIR 96
          +F +A  HW     V F+ER+P  +YI F  R
Sbjct: 30 MFKQAMRHWENFTCVTFVERTPEENYIVFTYR 61


>gnl|CDD|148562 pfam07009, DUF1312, Protein of unknown function (DUF1312).  This
           family consists of several bacterial proteins of around
           120 residues in length. The function of this family is
           unknown.
          Length = 113

 Score = 25.6 bits (57), Expect = 9.7
 Identities = 9/32 (28%), Positives = 15/32 (46%)

Query: 97  IIVLLTVLGLLDLYFVVGAYQTTVTKGASVMI 128
           II++L VL    L F   + +    K A + +
Sbjct: 2   IIIILIVLSFSPLVFFYKSGKDGNNKKAVIKV 33


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.336    0.147    0.444 

Gapped
Lambda     K      H
   0.267   0.0760    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 9,263,196
Number of extensions: 890712
Number of successful extensions: 1475
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1471
Number of HSP's successfully gapped: 61
Length of query: 175
Length of database: 10,937,602
Length adjustment: 90
Effective length of query: 85
Effective length of database: 6,945,742
Effective search space: 590388070
Effective search space used: 590388070
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.7 bits)
S2: 56 (25.3 bits)