RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy16915
         (175 letters)



>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
           synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 30.4 bits (68), Expect = 0.31
 Identities = 15/48 (31%), Positives = 19/48 (39%), Gaps = 10/48 (20%)

Query: 56  SPK-FV------ALFTLLLFL---KAFHWLTEDRVDFMERSPMISYIF 93
             K  V      +L+ L L L   KA   L + R+ F ER    S  F
Sbjct: 373 GAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRF 420



 Score = 26.2 bits (57), Expect = 7.1
 Identities = 32/158 (20%), Positives = 60/158 (37%), Gaps = 28/158 (17%)

Query: 41  VTETCLAFTVFKDDFSPKFVALFTLLLFL-----KAF------HWLTEDRVDFME--RSP 87
           VT   +A T   + F        T+L F+     +A+        + ED ++  E   SP
Sbjct: 278 VTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSP 337

Query: 88  MISYIFHIRIIVLLTVLGLLDLYFVVGAY-QTTVTKGASVMIVFGFEYAILLTVCVNILI 146
           M+S I ++    +   +   + +   G   + ++  GA  ++V G   + L  + + +  
Sbjct: 338 MLS-ISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQS-LYGLNLTLRK 395

Query: 147 KYALHTIDLNREIFWESKAVF---FL---------YME 172
             A   +D +R  F E K  F   FL          + 
Sbjct: 396 AKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLV 433


>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty
            acid synthase, acyl-carrier-protein, beta-ketoacyl RED
            beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces
            cerevisiae}
          Length = 1688

 Score = 27.1 bits (60), Expect = 4.1
 Identities = 13/84 (15%), Positives = 23/84 (27%), Gaps = 30/84 (35%)

Query: 81   DFMERSPMISYIFHIRII------VLLTVLGLLDLYFVVGAYQTTVT------------- 121
            D  +  P+ + I     I      V + ++         G  +T V              
Sbjct: 1064 DRFKDEPVQNDILQESFINTMSAWVNMLLISS------SGPIKTPVGACATSVESVDIGV 1117

Query: 122  ----KG-ASVMIVFGFEYAILLTV 140
                 G A + IV G++       
Sbjct: 1118 ETILSGKARICIVGGYDDFQEEGS 1141


>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
           programmed cell death; HET: DTP; 6.90A {Drosophila
           melanogaster} PDB: 3iz8_A*
          Length = 1221

 Score = 26.4 bits (57), Expect = 6.9
 Identities = 22/147 (14%), Positives = 37/147 (25%), Gaps = 52/147 (35%)

Query: 15  KLVKKI--FFGQLRAAEFEHLMERSWYAVTETCLAFTVFKDD--FSPKFVALFTLLLFLK 70
           KL   I      L  AE+  + +             +VF               L L   
Sbjct: 354 KLTTIIESSLNVLEPAEYRKMFD-----------RLSVFPPSAHIPTI-----LLSLI-- 395

Query: 71  AFHWLTEDRVDFMERSPMISYIFHIRIIVLLTVLGLLDLYFVVGAYQTTVTKGASVMIVF 130
              W    + D M             ++  L    L++                      
Sbjct: 396 ---WFDVIKSDVMV------------VVNKLHKYSLVEKQPKESTISI------------ 428

Query: 131 GFEYAILLTVCVNILIKYALHTIDLNR 157
               +I L + V +  +YALH   ++ 
Sbjct: 429 ---PSIYLELKVKLENEYALHRSIVDH 452



 Score = 26.0 bits (56), Expect = 9.5
 Identities = 20/165 (12%), Positives = 50/165 (30%), Gaps = 56/165 (33%)

Query: 7   LILVILAGKLVKKIFFGQLRAAEFEHLMERSWYAVTETCLAFTVFKDD----------FS 56
              ++   + + + F  ++    ++ LM        +  +   ++ +           F+
Sbjct: 68  FWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFA 127

Query: 57  PKFVALFTLLLFLKAFHWLTEDRVDFMERSPMISYIFHIRIIVLLTVLGLLDLYFVVGAY 116
              V+     L L+    L E R            +          + G+L      G+ 
Sbjct: 128 KYNVSRLQPYLKLRQ--ALLELRPA--------KNV---------LIDGVL------GS- 161

Query: 117 QTTVTKGASVMIVFGFEYAILLTVCVNILIKYALHTIDLNREIFW 161
                 G + +          L VC++  ++       ++ +IFW
Sbjct: 162 ------GKTWVA---------LDVCLSYKVQCK-----MDFKIFW 186


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.336    0.147    0.444 

Gapped
Lambda     K      H
   0.267   0.0588    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,735,678
Number of extensions: 156482
Number of successful extensions: 268
Number of sequences better than 10.0: 1
Number of HSP's gapped: 267
Number of HSP's successfully gapped: 7
Length of query: 175
Length of database: 6,701,793
Length adjustment: 87
Effective length of query: 88
Effective length of database: 4,272,666
Effective search space: 375994608
Effective search space used: 375994608
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.7 bits)
S2: 54 (24.9 bits)