RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy16916
(582 letters)
>gnl|CDD|237983 cd00016, alkPPc, Alkaline phosphatase homologues; alkaline
phosphatases are non-specific phosphomonoesterases that
catalyze the hydrolysis reaction via a phosphoseryl
intermediate to produce inorganic phosphate and the
corresponding alcohol, optimally at high pH. Alkaline
phosphatase exists as a dimer, each monomer binding 2
zinc atoms and one magnesium atom, which are essential
for enzymatic activity.
Length = 384
Score = 452 bits (1165), Expect = e-156
Identities = 214/493 (43%), Positives = 258/493 (52%), Gaps = 111/493 (22%)
Query: 53 PNTKKAKNIILFLGDGMGVSTHTAARIYQGQLNGQNGEENSLNFEKFPYTGLSKTYCVDS 112
N KKAKN+ILF+GDGMGVST TAARIY+GQ NG EE L F+ FP TGLSKTY VDS
Sbjct: 1 LNKKKAKNVILFIGDGMGVSTITAARIYKGQENG--AEEGKLLFDDFPLTGLSKTYSVDS 58
Query: 113 QVADSACTSTAYTNGVKGSIGTLGLNGRVLYRDCKGSKDNTTHTESIIHWAIKAGKSTGV 172
QV DSA T+TAY GVK + G +G++ V D DN S++ WA AGK+TG+
Sbjct: 59 QVTDSAATATAYATGVKTNNGAIGVSADVSRDD----TDNGKPVTSVLEWAKAAGKATGI 114
Query: 173 VTTTRITHASPAGTYSHSANRDWEADTDREASVDCQDIASQLIKNHPGHMINVLLGGGLK 232
VTTTR+THA+PA Y+H +R+WE +DIA QLI+ PG I+VLLGGG +
Sbjct: 115 VTTTRVTHATPAAFYAHVPDRNWE-----------EDIAEQLIEEAPGRGIDVLLGGGRR 163
Query: 233 KFTLKKDGGQRLD-EDLLLAYERMRQHHNQTYKIVKTKQELAAVNASTKFLLGLFADSHL 291
F GG R D DL + Y+ V + EL AVN +T LLGLFADSHL
Sbjct: 164 YFLPSTTGGGRKDGRDL---IAEWKAKG---YQYVWNRTELLAVNVATDKLLGLFADSHL 217
Query: 292 EYEVDKQVDKNTKVKDQPSLTEMTQKAIEVLSKNQNGFYLFVEEVLLSIRQQLSGASNSQ 351
YE+D+ K +PSL EMT+KAI+VLSKN NGF+L VE
Sbjct: 218 PYELDRDPFG----KGEPSLAEMTEKAIDVLSKNPNGFFLMVE----------------- 256
Query: 352 RHATASMVTHPDTNHANQNPSSNENLVSGGKIDIGHHGNKAKKALTETIEFDNAIKKALQ 411
GG+ID HH N A AL+ET+ FD+A++ AL
Sbjct: 257 ----------------------------GGRIDHAHHANDAAGALSETLAFDDAVEAALD 288
Query: 412 ITN-PDETLIVVTADHSHTFTIAGYPDRGNKILERVRYDGHDLLGLDKLPYLTLGYNNGP 470
+TL+VVTADHSH TI GY RGN IL D +D LPY TL Y N
Sbjct: 289 FAKKDGDTLVVVTADHSHGGTILGYAGRGNPILGLADAPELD---VDGLPYTTLTYANT- 344
Query: 471 GFRPAERNGYRHDINLDKTDDKDYRIPSGIPLEYETHGGEDVAVFSNGPWAHLLVGNFEQ 530
THGGEDV VF+ GP +HL G E
Sbjct: 345 ---------------------------------TGTHGGEDVPVFAYGPGSHLFRGVMEN 371
Query: 531 NYIPIVMAYAARI 543
I VMAYA +
Sbjct: 372 TEIAHVMAYALGL 384
>gnl|CDD|214515 smart00098, alkPPc, Alkaline phosphatase homologues.
Length = 419
Score = 394 bits (1013), Expect = e-133
Identities = 211/497 (42%), Positives = 260/497 (52%), Gaps = 89/497 (17%)
Query: 59 KNIILFLGDGMGVSTHTAARIYQGQLNGQNGEENSLNFEKFPYTGLSKTYCVDSQVADSA 118
KN+ILF+GDGMGVST TAARI +GQ G+ GEE L F++FP LSKTY D QV DSA
Sbjct: 1 KNVILFIGDGMGVSTITAARILKGQAGGKLGEETLLAFDQFPTGALSKTYNPDYQVTDSA 60
Query: 119 CTSTAYTNGVKGSIGTLGLNGRVLYRDCKGSKDNTTHTESIIHWAIKAGKSTGVVTTTRI 178
T+TAY GVK G +G+ S++ WA KAGKSTG+VTTTRI
Sbjct: 61 ATATAYLCGVKTYNGAIGV-----------DAATGKEVPSVLEWAKKAGKSTGLVTTTRI 109
Query: 179 THASPAGTYSHSANRDWEADTDREAS---VDCQDIASQLIKNHPGHMINVLLGGGLKKF- 234
THA+PA TY+H A+R W D D A C DIA QLI + I+VLLGGG F
Sbjct: 110 THATPAATYAHVASRKWYNDADIPAEALENGCGDIARQLIN----NRIDVLLGGGRSYFA 165
Query: 235 -----TLKKDGGQRLDEDLLLAYERMRQHHNQTYKIVKTKQELAAVNA-STKFLLGLFAD 288
+ G R D L+ + Y+ V + EL AV A LLGLFAD
Sbjct: 166 PTGTADPEGQRGTRRDGRNLIE-----EWKAAGYQYVWDRTELLAVGANKVDPLLGLFAD 220
Query: 289 SHLEYEVDKQVDKNTKVKDQPSLTEMTQKAIEVLSKNQNGFYLFVEEVLLSIRQQLSGAS 348
+ YE+D+ +PSL EMT+ AI +LSKN+ GF+L VE
Sbjct: 221 GDMPYEIDRD-------STEPSLAEMTEVAIRLLSKNERGFFLMVE-------------- 259
Query: 349 NSQRHATASMVTHPDTNHANQNPSSNENLVSGGKIDIGHHGNKAKKALTETIEFDNAIKK 408
GG+ID HH N A AL ET++FD AI+
Sbjct: 260 -------------------------------GGRIDHAHHENDACGALHETVDFDQAIQA 288
Query: 409 ALQIT-NPDETLIVVTADHSHTFTIAGYPDRGNKILERVRYDGHDLLGLDKLPYLTLGYN 467
AL+ DETL++VTADHSH T GY RGN I D D+ PY TL Y
Sbjct: 289 ALEFAKKEDETLVIVTADHSHVGTFGGYSLRGNDIF--GLAPSLD---ADRKPY-TLAYK 342
Query: 468 NGPGFRPAERNGYRHDINLDKTDDKDYRIPSGIPLEYETHGGEDVAVFSNGPWAHLLVGN 527
NGPG+ + NG R ++ + +YR + +PL+ ETH GEDVAVF+ GP AHL G
Sbjct: 343 NGPGYVVKDSNGIRPNVTKAEIGSPEYRAQTAVPLDSETHTGEDVAVFAYGPHAHLFRGV 402
Query: 528 FEQNYIPIVMAYAARIG 544
EQ YI VMAYA +G
Sbjct: 403 QEQTYIAHVMAYALCLG 419
>gnl|CDD|201110 pfam00245, Alk_phosphatase, Alkaline phosphatase.
Length = 421
Score = 385 bits (991), Expect = e-129
Identities = 202/496 (40%), Positives = 254/496 (51%), Gaps = 89/496 (17%)
Query: 58 AKNIILFLGDGMGVSTHTAARIYQGQLNGQNGEENSLNFEKFPYTGLSKTYCVDSQVADS 117
AKN+ILF+GDGMGVST TAARI +GQ G+ G E +L ++FP GLSKTY VD QV DS
Sbjct: 1 AKNVILFIGDGMGVSTITAARILKGQAKGKLGPE-TLAMDRFPLVGLSKTYNVDKQVTDS 59
Query: 118 ACTSTAYTNGVKGSIGTLGLNGRVLYRDCKGSKDNTTHTESIIHWAIKAGKSTGVVTTTR 177
A T+TAY GVK G +G++ + S++ A KAGKSTG+VTTTR
Sbjct: 60 AATATAYLCGVKTYNGAIGVD------------THGKEVPSVLEAAKKAGKSTGLVTTTR 107
Query: 178 ITHASPAGTYSHSANRDWEADTDREAS---VDCQDIASQLIKNHPGHMINVLLGGGLKKF 234
ITHA+PA TY+H NR W D AS C+DIA QLI N H I+VLLGGG K F
Sbjct: 108 ITHATPAATYAHVTNRKWYGDIAMPASALDEGCKDIAHQLISNR--HKIDVLLGGGRKYF 165
Query: 235 TLK------KDGGQRLDEDLLLAYERMRQHHNQTYKIVKTKQELAAV--NASTKFLLGLF 286
G RLD L E Y+ V + EL + S LLGLF
Sbjct: 166 FPTGTPDPYGQRGTRLD-GRNLIQEWKHAG----YQYVWDRTELLKAKDSPSVTPLLGLF 220
Query: 287 ADSHLEYEVDKQVDKNTKVKDQPSLTEMTQKAIEVLSKNQNGFYLFVEEVLLSIRQQLSG 346
AD + YE+ + PSL EMT+ AI +LS+N GF+L VE
Sbjct: 221 ADGDMPYEIPR------DPATDPSLKEMTEVAIRLLSRNPKGFFLMVE------------ 262
Query: 347 ASNSQRHATASMVTHPDTNHANQNPSSNENLVSGGKIDIGHHGNKAKKALTETIEFDNAI 406
GG+ID HH N A AL ET++FD A+
Sbjct: 263 ---------------------------------GGRIDHAHHENDACGALGETVDFDQAV 289
Query: 407 KKALQITNPD-ETLIVVTADHSHTFTIAGYPDRGNKILERVRYDGHDLLGLDKLPYLTLG 465
K AL+ + +TL+VVTADHSH F+ GY RG I D + + +
Sbjct: 290 KAALEFAKSEKDTLVVVTADHSHVFSFGGYTPRGWSIFGLAPA----KATPDGMAFKLIL 345
Query: 466 YNNGPGFRPAERNGYRHDINLDKTDDKDYRIPSGIPLEYETHGGEDVAVFSNGPWAHLLV 525
Y NGPG++ +G R ++ ++ + YR S +PL ETH GEDV VF+ GP AHL+
Sbjct: 346 YGNGPGYK--VEDGARPNVTAAESINNIYRTRSAVPLTSETHTGEDVPVFAYGPQAHLVH 403
Query: 526 GNFEQNYIPIVMAYAA 541
G EQ YI VMA A
Sbjct: 404 GVQEQTYIAHVMAAAL 419
>gnl|CDD|224699 COG1785, PhoA, Alkaline phosphatase [Inorganic ion transport and
metabolism].
Length = 482
Score = 288 bits (738), Expect = 6e-91
Identities = 162/503 (32%), Positives = 218/503 (43%), Gaps = 93/503 (18%)
Query: 52 QPNTKKAKNIILFLGDGMGVSTHTAARIYQGQLNGQNGEENSLNFEKFPYTGLSKTYCVD 111
+ KAKN+IL +GDGMG ST TAAR Y+G NG + G T+ D
Sbjct: 53 AASAGKAKNVILLIGDGMGPSTVTAARSYKGGPNGPFKGID--TLPDTGLIGTYSTHSSD 110
Query: 112 SQVADSACTSTAYTNGVKGSIGTLGLNGRVLYRDCKGSKDNTTHTESIIHWAIKAGKSTG 171
S V DSA +TA+ GVK G +G++ + K +I+ A +AGK+TG
Sbjct: 111 SNVTDSAAAATAFATGVKTYNGAIGVDP--NGKPLK----------TILELAKEAGKATG 158
Query: 172 VVTTTRITHASPAGTYSHSANRDWEADTDREASVDCQDIASQLIKNHPGHM---INVLLG 228
+VTTTRITHA+PA +H +RD E +IA+Q I ++VLLG
Sbjct: 159 LVTTTRITHATPAAFAAHVTSRDDE-----------DEIATQQICPGNAGRNDKVDVLLG 207
Query: 229 GGLKKFTLK-KDGGQRLDEDLLLAYERMRQHHNQTYKIVKTKQELAAVNASTKFLLGLFA 287
GG K F K GG+R D L+ + Y+ V+T+ EL AV+ LLGLFA
Sbjct: 208 GGRKYFLPKATAGGRRDDGRDLIE-----EAKAAGYQYVETRAELNAVSNQDDKLLGLFA 262
Query: 288 DSHLEYEVDKQVDKNTKVKDQPSLTEMTQKAIEVLSKNQNGFYLFVEEVLLSIRQQLSGA 347
D HL +D+ D N D+PSL EMT+KAI++LSKN+ GF+L VE
Sbjct: 263 DGHLPPNLDRDRDPN----DEPSLAEMTEKAIDLLSKNKKGFFLMVE------------- 305
Query: 348 SNSQRHATASMVTHPDTNHANQNPSSNENLVSGGKIDIGHHGNKAKKALTETIEFDNAIK 407
GG+ID H N A+ ET+ FD A++
Sbjct: 306 --------------------------------GGRIDWAGHANDPAGAIGETVAFDEAVQ 333
Query: 408 KALQITNPD-ETLIVVTADHSHTFTIAG----YPDRGNKILERVRYDGHDLLGLDKLPYL 462
AL D TL++VTADH G Y + + I + +L
Sbjct: 334 AALDFAEKDGNTLVIVTADHETGGLTIGRDGVYEWKPDPIKNAKHTGLGLAKKIADGAHL 393
Query: 463 TLGYNNGPGFRP--AERNGYRHDINLDKTDDKDYRIPS---GIPLEYETHGGEDVAVFSN 517
Y N G +N + D I S I H GEDV +F+
Sbjct: 394 PDVYGNYTGIELTDETPKEIEEALNAPNSIDIIGAIISERALIGWTTHGHTGEDVPIFAY 453
Query: 518 GPWAHLLVGNFEQNYIPIVMAYA 540
GP A G + I +A A
Sbjct: 454 GPGAENFRGVMDNTEIFQAIAAA 476
>gnl|CDD|236706 PRK10518, PRK10518, alkaline phosphatase; Provisional.
Length = 476
Score = 158 bits (401), Expect = 2e-42
Identities = 127/414 (30%), Positives = 178/414 (42%), Gaps = 110/414 (26%)
Query: 54 NTKKAKNIILFLGDGMGVSTHTAARIYQGQLNGQNGEENSLNFEKFPYTGLSKTYCVDSQ 113
+ K AKN+IL +GDGMG S TAAR Y G ++L P TG Y ++ +
Sbjct: 65 SNKPAKNVILLIGDGMGDSEITAARNYAEGAGGFFKGIDAL-----PLTGQYTHYALNKK 119
Query: 114 ------VADSACTSTAYTNGVKGSIGTLGLNGRVLYRDCKGSKDNTTHTESIIHWAIKAG 167
V DSA ++TA++ GVK G LG+ D G KD+ T ++ A AG
Sbjct: 120 TGKPDYVTDSAASATAWSTGVKTYNGALGV-------DIHG-KDHPT----LLELAKAAG 167
Query: 168 KSTGVVTTTRITHASPAGTYSHSANRDWEADTDREASVDCQD----------IASQLIKN 217
K+TG V+T + A+PA +H +R E S C I QL+
Sbjct: 168 KATGNVSTAELQDATPAALVAHVTSRKCYGPE--ETSEKCPGNALENGGRGSITEQLLNT 225
Query: 218 HPGHMINVLLGGGLKKFTLKKDGGQRLDEDLLLAYERMRQHHNQTYKIVKTKQELAAVNA 277
+V LGGG K F G+ + L Q + Y++V+ L AV
Sbjct: 226 RA----DVTLGGGAKTFAETATAGEWKGKTLR------EQAKARGYQLVEDADSLNAVTE 275
Query: 278 ST--KFLLGLFADSHL--EYEVDKQVDKNTKVK-------------DQPSLTEMTQKAIE 320
+ K LLGLFAD ++ + K K D P+L +MT KAI+
Sbjct: 276 ANQDKPLLGLFADGNMPVRWLGPKATYHGNLDKPPVTCTPNPQRTADVPTLAQMTDKAID 335
Query: 321 VLSKNQNGFYLFVEEVLLSIRQQLSGAS-NSQRHATASMVTHPDTNHANQNPSSNENLVS 379
+L KN+ GF+L VE GAS + Q HA NP
Sbjct: 336 LLKKNEKGFFLQVE-----------GASIDKQDHAA--------------NPC------- 363
Query: 380 GGKIDIGHHGNKAKKALTETIEFDNAIKKALQITNPD-ETLIVVTADHSHTFTI 432
G+I ET++ D A++KAL+ D TL++VTADH+H+ I
Sbjct: 364 -GQIG-------------ETVDLDEAVQKALEFARKDGNTLVIVTADHAHSSQI 403
>gnl|CDD|235203 PRK04024, PRK04024, cofactor-independent phosphoglycerate mutase;
Provisional.
Length = 412
Score = 36.8 bits (86), Expect = 0.025
Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 3/43 (6%)
Query: 386 GHHGN-KAKKALTETIEFDNAIKKALQITNPDETLIVVTADHS 427
GH G+ + K + E I D + L + DE I VT DHS
Sbjct: 308 GHDGDFEGKVEVIEKI--DKMLGYILDNLDLDEVYIAVTGDHS 348
>gnl|CDD|129889 TIGR00807, malonate_madL, malonate transporter, MadL subunit. The
MSS family includes the monobasic malonate:Na+ symporter
of Malonomonas rubra. It consists of two integral
membrane proteins, MadL and MadM. The transporter is
believed to catalyze the electroneutral reversible
uptake of H+-malonate with one Na+, and both subunits
have been shown to be essential for activity [Transport
and binding proteins, Carbohydrates, organic alcohols,
and acids].
Length = 125
Score = 34.4 bits (79), Expect = 0.036
Identities = 20/53 (37%), Positives = 27/53 (50%), Gaps = 8/53 (15%)
Query: 525 VGNFEQNYIPIVMAYAARIGPAKDVPLVSAAVSAGPTETLLIAVVSLVVCKFL 577
VG + YIPIV+A AA V AA+S G LL +V +L+V +
Sbjct: 64 VGFWSAMYIPIVVAMAAGQN-------VVAALSGGML-ALLASVAALIVTVLV 108
>gnl|CDD|112621 pfam03817, MadL, Malonate transporter MadL subunit.
Length = 125
Score = 34.4 bits (79), Expect = 0.037
Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 8/53 (15%)
Query: 525 VGNFEQNYIPIVMAYAARIGPAKDVPLVSAAVSAGPTETLLIAVVSLVVCKFL 577
VG + YIPIV+A AA+ V A+S GP LL V +++V +
Sbjct: 64 VGFWSAMYIPIVVAMAAQQN-------VVGALSGGPL-ALLAGVAAVIVTVLV 108
>gnl|CDD|226161 COG3635, COG3635, Predicted phosphoglycerate mutase, AP superfamily
[Carbohydrate transport and metabolism].
Length = 408
Score = 35.0 bits (81), Expect = 0.12
Identities = 18/43 (41%), Positives = 22/43 (51%), Gaps = 4/43 (9%)
Query: 386 GHHGNKAKKALTETIE-FDNAIKKALQITNPDETLIVVTADHS 427
GH G+ K IE D AI L + + DE +I VT DHS
Sbjct: 311 GHDGDFEGKV--RVIEDIDKAIGPLLDL-DLDEDVIAVTGDHS 350
>gnl|CDD|216643 pfam01676, Metalloenzyme, Metalloenzyme superfamily. This family
includes phosphopentomutase and
2,3-bisphosphoglycerate-independent phosphoglycerate
mutase. This family is also related to pfam00245. The
alignment contains the most conserved residues that are
probably involved in metal binding and catalysis.
Length = 423
Score = 33.1 bits (76), Expect = 0.44
Identities = 24/99 (24%), Positives = 41/99 (41%), Gaps = 22/99 (22%)
Query: 385 IGHHGN-KAKKALTETIEFDNAIKKALQITNPDETLIVVTADHS---------HT----- 429
+GH G+ +AK E D + + L ++ L+++TADH HT
Sbjct: 325 VGHTGDVEAKVKAIE--AVDARLGELLDALEKEDDLLIITADHGNAEEMKGTDHTREPVP 382
Query: 430 FTIAGYPDRGNKILER-----VRYDGHDLLGLDKLPYLT 463
I G R +++ E + +LGL+K +T
Sbjct: 383 LLIYGPGVRVDQLKEFGELADIAGTLLRILGLEKPQEMT 421
>gnl|CDD|198427 cd10029, UDG_F3_SMUG, SMUG: single-strand-selective monofunctional
uracil-DNA glycosylase. SMUG (single-strand-selective
monofunctional uracil-DNA glycosylase) is classified as
Family 3 of Uracil-DNA glycosylase (UDG) enzymes. SMUG
is a DNA repair enzyme that catalyzes the removal of
mismatched uracil and its derivatives from DNA to
initiate DNA base excision repair pathway. Uracil in DNA
can arise as a result of mis-incorporation of dUMP
residues by DNA polymerase or deamination of cytosine.
Uracil mispaired with guanine in DNA is one of the major
pro-mutagenic events, causing G:C->A:T mutations. Thus,
DNA repair enzymes are essential for maintaining the
integrity of genetic information. A Family 3 UDG from
human was first characterized to remove Uracil from
ssDNA, hence the name hSMUG (single-strand-selective
monofunctional uracil-DNA glycosylase). However,
subsequent research has shown that hSMUG1 and its rat
ortholog can remove Uracil and its oxidized pyrimidine
derivatives from both, ssDNA and dsDNA. The SMUG
targeted mismatched uracil derivatives include
5-hydroxyuracil (hoU), 5-hydroxymethyluracil (hmU) and
5-formyluracil (fU). SMUGs are found in Eubacteria and
Eukarya.
Length = 233
Score = 32.3 bits (74), Expect = 0.60
Identities = 15/34 (44%), Positives = 17/34 (50%), Gaps = 3/34 (8%)
Query: 163 AIKAGKSTGVVTTTRITHASPAGTYSHSANRDWE 196
A A + VT RI H SPA S +ANR W
Sbjct: 193 AKAALSAKLDVTVGRILHPSPA---SPAANRGWA 223
>gnl|CDD|183561 PRK12504, PRK12504, putative monovalent cation/H+ antiporter
subunit B; Reviewed.
Length = 178
Score = 31.5 bits (72), Expect = 0.63
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 546 AKDVPLVSAAVSAGPTETLLIAVVSLVV 573
A DV + AAV AG + LL+ ++L
Sbjct: 50 APDVAITEAAVGAGISTVLLLLTLALTG 77
>gnl|CDD|232912 TIGR00306, apgM, 2,3-bisphosphoglycerate-independent
phosphoglycerate mutase, archaeal form. Experimentally
characterized in archaea as
2,3-bisphosphoglycerate-independent phosphoglycerate
mutase. This model describes a set of proteins in the
Archaea (two each in Methanococcus jannaschii,
Methanobacterium thermoautotrophicum, and Archaeoglobus
fulgidus) and in Aquifex aeolicus (1 member) [Energy
metabolism, Glycolysis/gluconeogenesis].
Length = 396
Score = 31.3 bits (71), Expect = 1.3
Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 3/43 (6%)
Query: 386 GHHGN-KAKKALTETIEFDNAIKKALQITNPDETLIVVTADHS 427
GH G+ + K E I D+ I L + DET +++TADHS
Sbjct: 302 GHDGDPELKVRAIEKI--DSKIVGPLLALDLDETRLILTADHS 342
>gnl|CDD|100079 cd06158, S2P-M50_like_1, Uncharacterized homologs of Site-2
protease (S2P), zinc metalloproteases (MEROPS family
M50) which cleave transmembrane domains of substrate
proteins, regulating intramembrane proteolysis (RIP) of
diverse signal transduction mechanisms. Members of the
S2P/M50 family of RIP proteases use proteolytic activity
within the membrane to transfer information across
membranes to integrate gene expression with physiologic
stresses occurring in another cellular compartment. In
eukaryotic cells they regulate such processes as sterol
and lipid metabolism, and endoplasmic reticulum stress
responses. In prokaryotes they regulate such processes
as sporulation, cell division, stress response, and cell
differentiation. This group includes bacterial,
eukaryotic, and Archaeal S2P/M50s homologs with a
minimal core protein and no PDZ domains.
Length = 181
Score = 30.2 bits (69), Expect = 1.7
Identities = 15/59 (25%), Positives = 28/59 (47%), Gaps = 13/59 (22%)
Query: 533 IPIVMAYAARIGPAKDVPLVS----------AAVS-AGPTETLLIAVVSLVVCKFLAKY 580
+P+++ + G AK VP+ VS AGP LL+A++ ++ + L +
Sbjct: 53 LPLLLPFL--FGWAKPVPVNPRNFKNPRRGMLLVSLAGPLSNLLLALLFALLLRLLPAF 109
>gnl|CDD|172065 PRK13463, PRK13463, phosphatase PhoE; Provisional.
Length = 203
Score = 30.0 bits (67), Expect = 2.5
Identities = 14/34 (41%), Positives = 20/34 (58%)
Query: 495 RIPSGIPLEYETHGGEDVAVFSNGPWAHLLVGNF 528
R+ G+ L E H GE + + S+ A LLVG+F
Sbjct: 129 RVIEGMQLLLEKHKGESILIVSHAAAAKLLVGHF 162
>gnl|CDD|223275 COG0197, RplP, Ribosomal protein L16/L10E [Translation, ribosomal
structure and biogenesis].
Length = 146
Score = 29.5 bits (67), Expect = 2.8
Identities = 7/19 (36%), Positives = 10/19 (52%)
Query: 65 LGDGMGVSTHTAARIYQGQ 83
+G G G AAR+ G+
Sbjct: 86 MGKGKGKPEGWAARVKPGR 104
>gnl|CDD|233191 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger. [Transport and
binding proteins, Cations and iron carrying compounds].
Length = 1096
Score = 29.6 bits (66), Expect = 5.9
Identities = 11/21 (52%), Positives = 15/21 (71%)
Query: 13 GADGGGGGNGGASNINEQEKQ 33
G DGGGG +GG S E+E++
Sbjct: 851 GVDGGGGSDGGDSEEEEEEEE 871
>gnl|CDD|225625 COG3083, COG3083, Predicted hydrolase of alkaline phosphatase
superfamily [General function prediction only].
Length = 600
Score = 29.3 bits (66), Expect = 6.9
Identities = 22/73 (30%), Positives = 36/73 (49%), Gaps = 13/73 (17%)
Query: 363 DTNHANQNPSSNENLVSGGKIDIGHHGNKAKKALTETIEFDNAIKKALQITNP----DET 418
+++HAN +PSSN+ K N+ + AL E D+ I + L+ D T
Sbjct: 402 NSSHANDDPSSNQA-----KARPPFK-NRYQNALREV---DSQIGRVLEQLRNSGLLDNT 452
Query: 419 LIVVTADHSHTFT 431
++++TADH F
Sbjct: 453 VVIITADHGEEFN 465
>gnl|CDD|224441 COG1524, COG1524, Uncharacterized proteins of the AP superfamily
[General function prediction only].
Length = 450
Score = 29.1 bits (65), Expect = 7.9
Identities = 15/95 (15%), Positives = 31/95 (32%), Gaps = 20/95 (21%)
Query: 382 KIDIGHHGNKAKKALTETIEFDNAIKKALQITNP----DETLIVVTADHSHTFTIAGYPD 437
G + +A+ E D+ + + L++ +E L+++T+DH +
Sbjct: 232 GHKYGPDSPEYAEAVRE---VDSLLGELLELLKKRGLYEEYLVIITSDHGMSPLGVHGI- 287
Query: 438 RGNKILERVRYDGHDLLGLDKLPYLTLGYNNGPGF 472
I L++ TL G
Sbjct: 288 ----IYLNEL--------LEEKGIFTLLVLYGGPG 310
>gnl|CDD|219795 pfam08324, PUL, PUL domain. The PUL (PLAP, Ufd3p and Lub1p) domain
is a novel alpha-helical Ub-associated domain. It
directly binds to Cdc48, a chaperone-like AAA ATPase
that collects ubiquitylated substrates.
Length = 263
Score = 28.5 bits (64), Expect = 8.2
Identities = 15/55 (27%), Positives = 22/55 (40%), Gaps = 7/55 (12%)
Query: 229 GGLKKFTLKKDGGQRLDEDLLLAYERMRQHHNQTYKIVKTKQELAAVNASTKFLL 283
LK+F K +L +D L A E + +K A + A T +LL
Sbjct: 21 KKLKEFNSKLSNELKLSDDELNAIESL-------LSELKESSTAALLEALTIYLL 68
>gnl|CDD|233569 TIGR01776, TonB-tbp-lbp, TonB-dependent lactoferrin and transferrin
receptors. This family of TonB-dependent receptors are
responsible for import of iron from the mammalian iron
carriers lactoferrin and transferrin across the outer
membrane. These receptors are found only in bacteria
which can infect mammals such as Moraxella, Mannheimia,
Neisseria, Actinobacillus, Pasteurella, Haemophilus and
Histophilus species [Transport and binding proteins,
Cations and iron carrying compounds, Transport and
binding proteins, Porins].
Length = 932
Score = 29.0 bits (65), Expect = 8.4
Identities = 21/76 (27%), Positives = 29/76 (38%), Gaps = 6/76 (7%)
Query: 460 PYLTLGYNNGPGFR-PA--ERNGYRHDINLDKTDDKDYRIPSGIPLEYETHGGEDVAVFS 516
P+ +L Y GFR P+ E G R K + R P L+ E ++
Sbjct: 643 PFFSLSYRASTGFRVPSFYELYGERRGKASKKNVQQFLRTPD---LKPEKSLNHEIGARF 699
Query: 517 NGPWAHLLVGNFEQNY 532
G + HL V F Y
Sbjct: 700 KGDFGHLEVSYFRNRY 715
>gnl|CDD|113558 pfam04792, LcrV, V antigen (LcrV) protein. Yersinia pestis, the
aetiologic agent of plague, secretes a set of
environmentally regulated, plasmid pCD1-encoded
virulence proteins termed Yops and V antigen (LcrV) by a
type III secretion mechanism. LcrV is a multifunctional
protein that has been shown to act at the level of
secretion control by binding the Ysc inner-gate protein
LcrG and to modulate the host immune response by
altering cytokine production. LcrV is also necessary for
full induction of low-calcium response (LCR) stimulon
virulence gene transcription. Family members are not
confined to Yersinia pestis.
Length = 326
Score = 28.5 bits (63), Expect = 8.7
Identities = 12/40 (30%), Positives = 19/40 (47%), Gaps = 2/40 (5%)
Query: 241 GQRLDEDLLLAYERMRQHHNQTYKIVKTKQELAAVNASTK 280
R+D+D++ + HH+ K ELAA+ A K
Sbjct: 130 ADRIDDDIIGVIKDSLNHHDDARK--ALLDELAALTAELK 167
>gnl|CDD|185612 PTZ00430, PTZ00430, glucose-6-phosphate isomerase; Provisional.
Length = 552
Score = 28.8 bits (65), Expect = 9.0
Identities = 13/51 (25%), Positives = 25/51 (49%), Gaps = 8/51 (15%)
Query: 388 HGNKAKKALTETIEF-----DNAIKKALQITNPDETLIVVTADHSHTFTIA 433
+G + + + F +++A + +P+ETL+V+ S TFT A
Sbjct: 167 YGEAREASKGRKLRFLANVDPIDVRRATEGLDPEETLVVII---SKTFTTA 214
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.314 0.132 0.384
Gapped
Lambda K H
0.267 0.0670 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 29,053,399
Number of extensions: 2812045
Number of successful extensions: 1810
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1773
Number of HSP's successfully gapped: 39
Length of query: 582
Length of database: 10,937,602
Length adjustment: 102
Effective length of query: 480
Effective length of database: 6,413,494
Effective search space: 3078477120
Effective search space used: 3078477120
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 62 (27.8 bits)