RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy16916
(582 letters)
>1k7h_A Alkaline phosphatase; hydrolase, transferase, phosphomonoester,
extended beta SHEE triad, metal triad; HET: NAG; 1.92A
{Pandalus borealis} SCOP: c.76.1.1 PDB: 1shq_A* 1shn_A*
Length = 476
Score = 535 bits (1381), Expect = 0.0
Identities = 198/531 (37%), Positives = 292/531 (54%), Gaps = 71/531 (13%)
Query: 31 EKQNKFWIDSAINTLISRTHLQPNTKKAKNIILFLGDGMGVSTHTAARIYQGQLNGQNGE 90
E+ +W A + L + ++ K+AKN+I FLGDGM +ST TAARIY+G L G+ E
Sbjct: 1 EEDKAYWNKDAQDALDKQLGIKLREKQAKNVIFFLGDGMSLSTVTAARIYKGGLTGK-FE 59
Query: 91 ENSLNFEKFPYTGLSKTYCVDSQVADSACTSTAYTNGVKGSIGTLGLNGRVLYRDCKGSK 150
+++E+F + LSKTY D QV DSA ++TAY GVK + G +GL+ + +C
Sbjct: 60 REKISWEEFDFAALSKTYNTDKQVTDSAASATAYLTGVKTNQGVIGLDANTVRTNCSYQL 119
Query: 151 DNTTHTESIIHWAIKAGKSTGVVTTTRITHASPAGTYSHSANRDWEADTDREASVD---- 206
D + T SI HW +AG+STGVVT+TR+THA+PAGTY+H A+RDWE D+D +
Sbjct: 120 DESLFTYSIAHWFQEAGRSTGVVTSTRVTHATPAGTYAHVADRDWENDSDVVHDREDPEI 179
Query: 207 CQDIASQLIKNHPGHMINVLLGGGLKKFTLKK-------DGGQRLDE-DLLLAYERMRQH 258
C DIA QL+ PG V++GGG + F ++ G+R D L+ + +
Sbjct: 180 CDDIAEQLVFREPGKNFKVIMGGGRRGFFPEEALDIEDGIPGEREDGKHLITDWLDDKAS 239
Query: 259 HNQTYKIVKTKQELAAVN-ASTKFLLGLFADSHLEYEVDKQVDKNTKVKDQPSLTEMTQK 317
T V + +L AV+ A+T +L+GLF+ +HL+ + + + P+L EMT+
Sbjct: 240 QGATASYVWNRDDLLAVDIANTDYLMGLFSYTHLDTVLTR------DAEMDPTLPEMTKV 293
Query: 318 AIEVLSKNQNGFYLFVEEVLLSIRQQLSGASNSQRHATASMVTHPDTNHANQNPSSNENL 377
AIE+L+K++NGF+L VE
Sbjct: 294 AIEMLTKDENGFFLLVE------------------------------------------- 310
Query: 378 VSGGKIDIGHHGNKAKKALTETIEFDNAIKKALQITNPDETLIVVTADHSHTFTIAGYPD 437
GG+ID HH N+ +++L ET++ + A+ AL +T+P+ET+I+VTADH HT TI GY D
Sbjct: 311 --GGRIDHMHHANQIRQSLAETLDMEEAVSMALSMTDPEETIILVTADHGHTLTITGYAD 368
Query: 438 RGNKILERVRYDGHDLLGLDKLPYLTLGYNNGPGFRPAERNGYRHDINLDKTDDKDYRIP 497
R IL+ + LD Y L Y +GPG+ E +G R++ + D ++R
Sbjct: 369 RNTDILDFA-----GISDLDDRRYTILDYGSGPGYHITE-DGKRYEPTEEDLKDINFRYA 422
Query: 498 SGIPLEYETHGGEDVAVFSNGPWAHLLVGNFEQNYIPIVMAYAARIGPAKD 548
S P TH G DV ++ NGP+AHL G +E+NYIP +AYAA +G +
Sbjct: 423 SAAPKHSATHDGTDVGIWVNGPFAHLFTGVYEENYIPHALAYAACVGTGRT 473
>1zed_A Alkaline phosphatase; phosphoserine, substrate analog, hydro; HET:
NAG PNP; 1.57A {Homo sapiens} SCOP: c.76.1.1 PDB:
1zeb_A* 1zef_A* 2glq_A* 3mk0_A* 3mk1_A* 3mk2_A* 1ew2_A*
Length = 484
Score = 521 bits (1343), Expect = 0.0
Identities = 216/538 (40%), Positives = 288/538 (53%), Gaps = 82/538 (15%)
Query: 27 INEQEKQNKFWIDSAINTLISRTHLQPNTKKAKNIILFLGDGMGVSTHTAARIYQGQLNG 86
I +E+ FW A L + LQP AKN+I+FLGDGMGVST TAARI +GQ
Sbjct: 2 IPVEEENPDFWNREAAEALGAAKKLQPAQTAAKNLIIFLGDGMGVSTVTAARILKGQKKD 61
Query: 87 QNGEENSLNFEKFPYTGLSKTYCVDSQVADSACTSTAYTNGVKGSIGTLGLNGRVLYRDC 146
+ G E L ++FPY LSKTY VD V DS T+TAY GVKG+ T+GL+ + C
Sbjct: 62 KLGPEIPLAMDRFPYVALSKTYNVDKHVPDSGATATAYLCGVKGNFQTIGLSAAARFNQC 121
Query: 147 KGSKDNTTHTESIIHWAIKAGKSTGVVTTTRITHASPAGTYSHSANRDWEADTDREASVD 206
++ N S+++ A KAGKS GVVTTTR+ HASPAGTY+H+ NR+W +D D AS
Sbjct: 122 NTTRGN--EVISVMNRAKKAGKSVGVVTTTRVQHASPAGTYAHTVNRNWYSDADVPASAR 179
Query: 207 ---CQDIASQLIKNHPGHMINVLLGGGLKKFTLK-----------KDGGQRLDEDLLLAY 252
CQDIA+QLI N I+V+LGGG K GG RLD L+
Sbjct: 180 QEGCQDIATQLISNMD---IDVILGGGRKYMFRMGTPDPEYPDDYSQGGTRLDGKNLVQE 236
Query: 253 ERMRQHHNQTYKIVKTKQELAAVN--ASTKFLLGLFADSHLEYEVDKQVDKNTKVKDQPS 310
+ Q + V + EL + S L+GLF ++YE+ + PS
Sbjct: 237 WLAK---RQGARYVWNRTELMQASLDPSVTHLMGLFEPGDMKYEIHR------DSTLDPS 287
Query: 311 LTEMTQKAIEVLSKNQNGFYLFVEEVLLSIRQQLSGASNSQRHATASMVTHPDTNHANQN 370
L EMT+ A+ +LS+N GF+LFVE
Sbjct: 288 LMEMTEAALRLLSRNPRGFFLFVE------------------------------------ 311
Query: 371 PSSNENLVSGGKIDIGHHGNKAKKALTETIEFDNAIKKALQITNPDETLIVVTADHSHTF 430
GG+ID GHH ++A +ALTETI FD+AI++A Q+T+ ++TL +VTADHSH F
Sbjct: 312 ---------GGRIDHGHHESRAYRALTETIMFDDAIERAGQLTSEEDTLSLVTADHSHVF 362
Query: 431 TIAGYPDRGNKILERVRYDGHDLLGLDKLPYLTLGYNNGPGFRPAERNGYRHDINLDKTD 490
+ GYP RG+ I + D+ Y L Y NGPG+ ++G R D+ ++
Sbjct: 363 SFGGYPLRGSSI-----FGLAPGKARDRKAYTVLLYGNGPGYV--LKDGARPDVTESESG 415
Query: 491 DKDYRIPSGIPLEYETHGGEDVAVFSNGPWAHLLVGNFEQNYIPIVMAYAARIGPAKD 548
+YR S +PL+ ETH GEDVAVF+ GP AHL+ G EQ +I VMA+AA + P
Sbjct: 416 SPEYRQQSAVPLDEETHAGEDVAVFARGPQAHLVHGVQEQTFIAHVMAFAACLEPYTA 473
>2w0y_A APH, alkaline phosphatase; hydrolase, halophilic; 1.7A
{Halobacterium salinarum R1} PDB: 2x98_A
Length = 473
Score = 418 bits (1076), Expect = e-142
Identities = 111/530 (20%), Positives = 178/530 (33%), Gaps = 105/530 (19%)
Query: 36 FWIDSAINTLISRTHLQPNTKKAKNIILFLGDGMGVSTHTAARIYQGQLNGQN------- 88
+ + + Q A N I ++ DGMG + +AAR
Sbjct: 25 VAGGAVASQFQTTARAQATASPAANAIAYIVDGMGQTQISAARYLNAYKTAPERFPLNVS 84
Query: 89 GEENSLNFEKFPYTGLSKTYCVD--SQVADSACTSTAYTNGVKGSIGTLGLNGRVLYRDC 146
E F+ F G T+ D DSA +TA+ +GVK G +G
Sbjct: 85 PAETPTGFDAFSSRGSMTTFPDDPYETTTDSAAAATAFASGVKTYNGAIGG--------V 136
Query: 147 KGSKDNTTHTESIIHWAIKAGKSTGVVTTTRITHASPAGTYSHSANRDWEADTDREASVD 206
+ S ++++ A G +TG++TTT THA+PA +H +R +
Sbjct: 137 QTSGGGFQRVDTVLERASAQGYATGLITTTEATHATPAAFAAHVEDRGNQ---------- 186
Query: 207 CQDIASQLIKNHPGHMINVLLGGGLKKFTLKKDGGQRLDEDLLLAYERMRQHHNQTYKIV 266
+IA Q I+ +V+LGG + F G L + R + Y I
Sbjct: 187 -TEIARQYIEETQ---PDVILGGQRRDFEADASNGGTL-------VDAARDNG---YTIA 232
Query: 267 KTKQELAAVNASTKFLLGLFA-DSHLEYEVDKQVDKNTKVKDQPSLTEMTQKAIEVLSK- 324
+T EL AV+ +LGLF+ +SHL+Y +D++ D QP+L M +++LS
Sbjct: 233 ETAAELDAVD--DPPVLGLFSQESHLDYYLDRKNDPENT---QPNLDAMVDAGVDLLSSA 287
Query: 325 --NQNGFYLFVEEVLLSIRQQLSGASNSQRHATASMVTHPDTNHANQNPSSNENLVSGGK 382
GF+L VE G+
Sbjct: 288 GDPDKGFFLLVE---------------------------------------------SGR 302
Query: 383 IDIGHHGNKAKKALTETIEFDNAIKKALQ--ITNPDETLIVVTADHSHT-FTIAGYPDRG 439
+D H N + E E + ++ T + T +V T DH T+
Sbjct: 303 VDHAGHANYPAQVA-EQYEATQVAGQLVEYAETTAEPTFLVSTGDHECGGLTLGRDSPYE 361
Query: 440 NKILERVRYDGHDLLGLDKLPYLTLG------YNNGPGFRPAERNGYRHDINLDKTDDKD 493
+ D L + G + +
Sbjct: 362 VEYDVLAAQKATTSRLRDLLAGVRSADELESIVAAHTGITALTDREVAKLRDAPGSISTI 421
Query: 494 YRIPSGIPLEYETHGGEDVAVFSNGPWAHLLVGNFEQNYIPIVMAYAARI 543
+GI + H G DV VF++GP A + + +A A +
Sbjct: 422 LAERAGIAFTTDGHTGTDVPVFAHGPNAARFDAARDNTAVADALAAALGV 471
>3tg0_A Apase, alkaline phosphatase; hydrolase; 1.20A {Escherichia coli}
PDB: 1b8j_A 1ed9_A 1ew8_A 1ew9_A 1ed8_A 1y6v_A 3bdg_B
1elx_A 2g9y_A 2ga3_A* 3bdh_A 3cmr_A 1elz_A 1hjk_A*
1hqa_A 1ely_A 3dyc_A 1ali_A 1alj_A 3bdf_A ...
Length = 449
Score = 407 bits (1047), Expect = e-138
Identities = 118/515 (22%), Positives = 185/515 (35%), Gaps = 125/515 (24%)
Query: 52 QPNTKKAKNIILFLGDGMGVSTHTAARIYQGQLNGQ-NGEENSLNFEKFPYTGLSKTYCV 110
+ K AKNIIL +GDGMG S TAAR Y G G + ++ + L+K
Sbjct: 36 SLSDKPAKNIILLIGDGMGDSEITAARNYAEGAGGFFKGIDALPLTGQYTHYALNKKTGK 95
Query: 111 DSQVADSACTSTAYTNGVKGSIGTLGLNGRVLYRDCKGSKDNTTHTESIIHWAIKAGKST 170
V DSA ++TA++ GVK G LG++ + +I+ A AG +T
Sbjct: 96 PDYVTDSAASATAWSTGVKTYNGALGVDI------------HEKDHPTILEMAKAAGLAT 143
Query: 171 GVVTTTRITHASPAGTYSHSANRDWEADTDREA----SVDCQDIASQLIKNHPGHMINVL 226
G V+T + A+PA +H +R + + + + + +V
Sbjct: 144 GNVSTAELQDATPAALVAHVTSRKCYGPSATSEKCPGNALEKGGKGSITEQLLNARADVT 203
Query: 227 LGGGLKKFTLKKDGGQRLDEDLLLAYERMRQHHNQTYKIVKTKQELAAVNA--STKFLLG 284
LGGG K F G+ + L E+ + Y++V L +V K LLG
Sbjct: 204 LGGGAKTFAETATAGEWQGKTL---REQAQARG---YQLVSDAASLNSVTEANQQKPLLG 257
Query: 285 LFADSHLEYEVDKQVDKNTKVKD---------------QPSLTEMTQKAIEVLSKNQNGF 329
LFAD ++ D P+L +MT KAIE+LSKN+ GF
Sbjct: 258 LFADGNMPVRWLGPKATYHGNIDKPAVTCTPNPQRNDSVPTLAQMTDKAIELLSKNEKGF 317
Query: 330 YLFVEEVLLSIRQQLSGASNSQRHATASMVTHPDTNHANQNPSSNENLVSGGKIDIGHHG 389
+L VE G ID H
Sbjct: 318 FLQVE---------------------------------------------GASIDKQDHA 332
Query: 390 NKAKKALTETIEFDNAIKKALQITNPD-ETLIVVTADHSHTFTIAGYPDRGNKILERVRY 448
+ ET++ D A+++AL+ + TL++VTADH+H I + + + +
Sbjct: 333 ANPCGQIGETVDLDEAVQRALEFAKKEGNTLVIVTADHAHASQIVAPDTKAPGLTQALNT 392
Query: 449 DGHDLLGLDKLPYLTLGYNNGPGFRPAERNGYRHDINLDKTDDKDYRIPSGIPLEYETHG 508
+ + Y N + H
Sbjct: 393 KDG--------AVMVMSYGNSEED-------------------------------SQEHT 413
Query: 509 GEDVAVFSNGPWAHLLVGNFEQNYIPIVMAYAARI 543
G + + + GP A +VG +Q + M A +
Sbjct: 414 GSQLRIAAYGPHAANVVGLTDQTDLFYTMKAALGL 448
>3a52_A Cold-active alkaline phosphatase; hydrolase; 2.20A {Shewanella}
Length = 400
Score = 392 bits (1010), Expect = e-133
Identities = 112/495 (22%), Positives = 175/495 (35%), Gaps = 115/495 (23%)
Query: 60 NIILFLGDGMGVSTHTAARIYQGQLNGQNGEENSLNFEKFPYTGLSKTYCVD--SQVADS 117
+I+ +GDGMG + +A R +Q + E F++ G++ TY V DS
Sbjct: 2 GMIIMVGDGMGPAYTSAYRYFQDNPDT--EEIEQTVFDRL-LVGMASTYPARESGYVTDS 58
Query: 118 ACTSTAYTNGVKGSIGTLGLNGRVLYRDCKGSKDNTTHTESIIHWAIKAGKSTGVVTTTR 177
A ++TA G K G + ++ N +I+ A G STGV T +
Sbjct: 59 AASATALATGFKSYNGAIAVD------------INKRPLTTIMQMAKARGMSTGVAVTAQ 106
Query: 178 ITHASPAGTYSHSANRDWEADTDREASVDCQDIASQLIKNHPGHMINVLLGGGLKKFTLK 237
+ HA+PA +H+ +R + IA+ ++ +V+LGGG K F
Sbjct: 107 VNHATPAAFLTHNESRKNY-----------EAIAADML----KSDADVILGGGRKYF--- 148
Query: 238 KDGGQRLDEDLLLAYERMRQHHNQTYKIVKTKQELAAVNASTKFLLGLFADSHLEYEVDK 297
E L + Y+ + +L ++ +LGLFA+ L + +D
Sbjct: 149 -------SEAL---VSQFSAKG---YQHITELAQLDSIT--QPKVLGLFAEVQLPWVIDD 193
Query: 298 QVDKNTKVKDQPSLTEMTQKAIEVLSKNQNGFYLFVEEVLLSIRQQLSGASNSQRHATAS 357
D +L+++TQK++++LS+N+ GF L VE
Sbjct: 194 --------TDANTLSKLTQKSLDLLSQNEKGFVLLVE----------------------- 222
Query: 358 MVTHPDTNHANQNPSSNENLVSGGKIDIGHHGNKAKKALTETIEFDNAIKKALQ-ITNPD 416
G ID H N A+ E F NAI+ Q I
Sbjct: 223 ----------------------GSLIDWAGHNNDIATAMAEMQGFANAIEVVEQYIRQHP 260
Query: 417 ETLIVVTADHSH-TFTIAGYPDRGNKILERVRYDGHDLLGLDKLPYL-----TLGYNNGP 470
+TL+VVTADH+ +I + + G
Sbjct: 261 DTLLVVTADHNTGGLSIGANGEYQWDTKLPKGISASPASIATHAIAADDWQAGVNQQLGF 320
Query: 471 GFRPAERN-----GYRHDINLDKTDDKDYRIPSGIPLEYETHGGEDVAVFSNGPWAHLLV 525
E + L+ K S H G DV VF+ GP A L
Sbjct: 321 DVNSTELQQLTNARMQGKSTLEVALKKIIDTRSYTGWTTSGHTGVDVQVFAMGPAADLFK 380
Query: 526 GNFEQNYIPIVMAYA 540
GN + +I M
Sbjct: 381 GNQDNTHIAEKMMSL 395
>3e2d_A Alkaline phosphatase; cold-adaptation, metalloenzyme, dimer,
psychrophilic bacteria, crystallography, hydrolase;
1.40A {Vibrio SP}
Length = 502
Score = 384 bits (987), Expect = e-128
Identities = 118/528 (22%), Positives = 193/528 (36%), Gaps = 103/528 (19%)
Query: 57 KAKNIILFLGDGMGVSTHTAARIYQGQLNGQNGEENSL---NFEKFPYTGLSKTYCVDSQ 113
+ KN+IL +GDGMG Y Q + N + G S T+ D+
Sbjct: 2 EIKNVILMIGDGMGPQQVGLLETYANQAPNSIYKGNKTAIYQLAQEGVIGSSLTHPEDAI 61
Query: 114 VADSACTSTAYTNGVKGSIGTLGLNGRVLYRDCKGSKDNTTHTESIIHWAIKAGKSTGVV 173
V DSAC++T G+ S +G++ H E+++ A KAGK+TG+V
Sbjct: 62 VVDSACSATMLATGIYSSSEVIGID------------SQGNHVETVLEKAKKAGKATGLV 109
Query: 174 TTTRITHASPAGTYSHSANRDWEADTDREASVDCQDIASQLIKNHPGHMINVLLGGGLKK 233
+ TR+THA+PA +H +R E IAS ++ +V+L GGL+
Sbjct: 110 SDTRLTHATPASFAAHQPHRSLENQ-----------IASDML----ATGADVMLSGGLRH 154
Query: 234 FTLKKDGGQRLDEDLLLAYERMRQHH---------------NQTYKIVKTKQELAAVNAS 278
+ K + L + + Y++ + L A
Sbjct: 155 WIPKSTNDKGETYKQLEKLTQGDVYLKSKRKDDRNLLTEAEKDGYQLAFNRNMLDD--AK 212
Query: 279 TKFLLGLFADSHLEYEVDKQVDKNTKVKDQPSLTEMTQKAIEVLSKNQNGFYLFVEEVLL 338
LLGLFA S ++ + K + + QPSL EMTQKA+ +LSK+++GF+L VE
Sbjct: 213 GDKLLGLFAYSGMDDGIAYSNKKKSGERTQPSLKEMTQKALNILSKDEDGFFLMVE---- 268
Query: 339 SIRQQLSGASNSQRHATASMVTHPDTNHANQNPSSNENLVSGGKIDIGHHGNKAKKALTE 398
GG+ID H N A L E
Sbjct: 269 -----------------------------------------GGQIDWAGHSNDAGTMLHE 287
Query: 399 TIEFDNAIKKALQ-ITNPDETLIVVTADHSHTFTIAGYPDRGNKILERVRYDGHDLLGLD 457
++FD AI+ + + ++T+++VTADH G+ N + + + G D
Sbjct: 288 LLKFDEAIQTVYEWAKDREDTIVIVTADHETGSF--GFSYSSNDLPKPQKRSGEAFADRD 345
Query: 458 KLPYLTLG--------YNNGPGFRPAERNGYRHDINLDKTDDKDYRIPSGIPLEYETHGG 509
P G YN + + D +L + +
Sbjct: 346 YAPNFNFGAFDILDGLYNQKQSYYGMISEFQKLDKSLQTPEKLAEIVNKNSEFPITAEQA 405
Query: 510 EDVAVFSNGPWAHLLVGNFEQNYIPIVMAYAARIGPAKDVPLVSAAVS 557
++V P+ +P + + A L++ +
Sbjct: 406 KNVLASKPNPYRLAQHKYLSAEEVPAINDFDAFFPYNDRGNLLAREQA 453
>2w5v_A Alkaline phosphatase; psychrophiles, cold adaptation, hydrolase;
HET: SEP; 1.78A {Antarctic bacterium TAB5} PDB: 2w5w_A*
2w5x_A* 2iuc_A 2iuc_B
Length = 375
Score = 378 bits (972), Expect = e-127
Identities = 108/504 (21%), Positives = 178/504 (35%), Gaps = 150/504 (29%)
Query: 40 SAINTLISRTHLQPNTKKAKNIILFLGDGMGVSTHTAARIYQGQLNGQNGEENSLNFEKF 99
+ T +P K KN+IL + DG G+S ++ ++ + N+ +F
Sbjct: 16 FSCKTTSVLVKNEPQLKTPKNVILLISDGAGLSQISSTFYFKSG---------TPNYTQF 66
Query: 100 PYTGLSKTYCVDSQVADSACTSTAYTNGVKGSIGTLGLNGRVLYRDCKGSKDNTTHTESI 159
GL KT V DSA +TA++ G+K +G+ D++T +SI
Sbjct: 67 KNIGLIKTSSSREDVTDSASGATAFSCGIKTYNAAIGVA------------DDSTAVKSI 114
Query: 160 IHWAIKAGKSTGVVTTTRITHASPAGTYSHSANRDWEADTDREASVDCQDIASQLIKNHP 219
+ A TGVV T+ IT A+PA Y+H+ NR E ++IA + ++
Sbjct: 115 VEIAALNNIKTGVVATSSITDATPASFYAHALNRGLE-----------EEIAMDMTESD- 162
Query: 220 GHMINVLLGGGLKKFTLKKDGGQRLDEDLLLAYERMRQHHNQTYKIVKTKQELAAVNAST 279
++ GGGL FT +KD +D+ ++ + + I T + AS
Sbjct: 163 ---LDFFAGGGLNYFTKRKDK-----KDV---LAILKGNQ---FTINTTALTDFSSIASN 208
Query: 280 KFLLGLFADSHLEYEVDKQVDKNTKVKDQPSLTEMTQKAIEVLSKNQNGFYLFVEEVLLS 339
+ +G ++K L+ T AI+ LSK+ + F++ E
Sbjct: 209 R-KMGFLLADEAMPTMEK--------GRGNFLSAATDLAIQFLSKDNSAFFIMSE----- 254
Query: 340 IRQQLSGASNSQRHATASMVTHPDTNHANQNPSSNENLVSGGKIDIGHHGNKAKKALTET 399
G +ID G H N A ++E
Sbjct: 255 ----------------------------------------GSQIDWGGHANNASYLISEI 274
Query: 400 IEFDNAIKKALQITNPD-ETLIVVTADHSH-TFTIAGYPDRGNKILERVRYDGHDLLGLD 457
+FD+AI AL D TL++VT+DH FT+A ++
Sbjct: 275 NDFDDAIGTALAFAKKDGNTLVIVTSDHETGGFTLAAKKNKRE----------------- 317
Query: 458 KLPYLTLGYNNGPGFRPAERNGYRHDINLDKTDDKDYRIPSGIPLEYETHGGEDVAVFSN 517
D ++ DY H + VF+
Sbjct: 318 -----------------------------DGSEYSDYTEIGPTF-STGGHSATLIPVFAY 347
Query: 518 GPWAHLLVGNFEQNYIPIVMAYAA 541
GP + +G +E N I +
Sbjct: 348 GPGSEEFIGIYENNEIFHKILKVT 371
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 64.1 bits (155), Expect = 9e-11
Identities = 70/532 (13%), Positives = 152/532 (28%), Gaps = 145/532 (27%)
Query: 31 EKQNKFWIDS------------AINTLISRTHLQPNTKKAKNIILFLGDGMG-----VST 73
E++++ + D+ L R L + AKN+++ G+
Sbjct: 114 EQRDRLYNDNQVFAKYNVSRLQPYLKL--RQALL-ELRPAKNVLID---GVLGSGKTWVA 167
Query: 74 HTAARIYQGQLN----------GQNGEENSL--NFEKFPYTGLSKTYCVDSQVADSACTS 121
Y+ Q ++ +K + + +D +
Sbjct: 168 LDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKL-LYQIDPNWT---SRSDHSSNI 223
Query: 122 TAYTNGVKGSIGTLGLNGRVLYRDCKGSKDNTTHTESIIHWAIKA--GKSTGVVTTTR-- 177
+ ++ + L L + Y +C N + A A ++ TTR
Sbjct: 224 KLRIHSIQAELRRL-LKSKP-YENCLLVLLNVQNA-----KAWNAFNLSCK-ILLTTRFK 275
Query: 178 -ITHASPAGTYSH-SANRDWEADTDREA--------SVDCQDIASQLIKNHPGHMINVLL 227
+T A T +H S + T E QD+ +++ +P
Sbjct: 276 QVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNP-------- 327
Query: 228 GGGLKKFTLKKDGGQRLDEDLLLAY--ERMRQHHN--QTYKIVKTKQELAAVNASTKFL- 282
L+ E +R +K V + + +S L
Sbjct: 328 --------------------RRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLE 367
Query: 283 ----------LGLF-ADSHLEYEVDKQV-DKNTKVKDQPSLTEMTQKAIEVLSKNQNGFY 330
L +F +H+ + + K + ++ + + ++ K
Sbjct: 368 PAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYS--LVEKQPKEST 425
Query: 331 LFVEEVLLSIRQQLSGASNSQRHATASMVTHPDTNHANQNPSSNENLVSGGKID------ 384
+ + + L ++ +L H S+V +H N + + + + +D
Sbjct: 426 ISIPSIYLELKVKLEN--EYALH--RSIV-----DHYNIPKTFDSDDLIPPYLDQYFYSH 476
Query: 385 IGHHGNKAKKA----LTETIEFD-----NAIKKALQITNPDETLIVVTAD----HSHTFT 431
IGHH + L + D I+ N +++ +
Sbjct: 477 IGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICD 536
Query: 432 IAGYPDRG-NKILERVRYDGHDLLGLDKLPY-----LTLGYNNGPGFRPAER 477
+R N IL+ + +L+ Y + L + F A +
Sbjct: 537 NDPKYERLVNAILDFLPKIEENLI---CSKYTDLLRIALMAEDEAIFEEAHK 585
Score = 51.4 bits (122), Expect = 6e-07
Identities = 43/291 (14%), Positives = 88/291 (30%), Gaps = 66/291 (22%)
Query: 257 QHHNQTYKIVKTKQELAAVNASTKFLLGLFADSHLE----YEVD---KQVDKNTKVKD-- 307
HH+ + E K +L +F D+ ++ +V K + ++
Sbjct: 3 HHHHMDF-------ETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHII 55
Query: 308 -QPSLTEMTQKAIEVL-SKNQNGFYLFVEEVLLS----IRQQLSGASNSQRHATASMVTH 361
T + L SK + FVEEVL + + T +
Sbjct: 56 MSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYI-- 113
Query: 362 PDTNHANQNPSSNENLVSGGKIDIGHHGNKAKKALTETIEFDNAIKKALQITNPDETLIV 421
+ L + ++ ++ ++ + L +++AL P + +++
Sbjct: 114 ----------EQRDRLYNDNQVFAKYNVSRLQPYL--------KLRQALLELRPAKNVLI 155
Query: 422 VTADHSHTFTIAGYPDRGNKIL--ERVRYDGHDLLGLDKLP----YLTLGYNNGPGFRPA 475
G G + + K+ +L L N P
Sbjct: 156 ----D-------GVLGSGKTWVALDVCL----SYKVQCKMDFKIFWLNLKNCNSPETVLE 200
Query: 476 ERNGYRHDINLDKTDDKDYRIPSGIPLEYETHGGEDVAVFSNGPWAH-LLV 525
+ I+ + T D+ S I L + E + + P+ + LLV
Sbjct: 201 MLQKLLYQIDPNWTSRSDH--SSNIKLRIHSIQAELRRLLKSKPYENCLLV 249
Score = 48.3 bits (114), Expect = 7e-06
Identities = 54/404 (13%), Positives = 117/404 (28%), Gaps = 119/404 (29%)
Query: 159 IIHWAIKAGKST---GVVTTTRITHASPAGTYSHSANRDWEADTDREASVDCQDIASQLI 215
+I + +GK+ V + ++ + W ++ + ++
Sbjct: 154 LIDGVLGSGKTWVALDVCLSYKVQCKMDFKIF-------W-------LNLKNCNSPETVL 199
Query: 216 KNHPGHMINVLLGGGLKKFTLKKDGGQRLDEDLLLAYERMRQH-HNQTYKI-------VK 267
+ M+ LL +T + D + + +R+ ++ Y+ V+
Sbjct: 200 E-----MLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQ 254
Query: 268 TKQELAAVNASTKFLLGLFADSHLEYEVDKQVDKNTKVKD-QPSLTEMTQKAIEVLSKNQ 326
+ A N S K LL + + + + +LT + +L K
Sbjct: 255 NAKAWNAFNLSCKILL-TTRFKQVTDFLSAATTTHISLDHHSMTLTP--DEVKSLLLK-- 309
Query: 327 NGFYLFVEEVLLSIRQQLSGASNSQRHAT--ASMVTHPDTNHANQNPSSNENLVSGGKID 384
YL L R+ L+ N +R + S+ T +N
Sbjct: 310 ---YLDCRPQDLP-REVLTT--NPRRLSIIAESIRDGLATW---------DNW------- 347
Query: 385 IGHHGNKAKKALTETIEFDNAIKKALQITNPDETLIVVTADHSHTFTIAGYPDRGN---K 441
K + + I+ +L + P E ++ +P +
Sbjct: 348 --------KHVNCD--KLTTIIESSLNVLEPAEYR-----KMFDRLSV--FPPSAHIPTI 390
Query: 442 ILERV-----RYDGHDLLGLDKLPYLTLGYNNGPGFRPAERNGYR-----HDINLD---K 488
+L + + D + ++KL +L E+ I L+ K
Sbjct: 391 LLSLIWFDVIKSDVMVV--VNKLHKYSL----------VEKQPKESTISIPSIYLELKVK 438
Query: 489 TDDKD---------YRIPSGIPLEYETHGGEDVAVFSNGPWAHL 523
+++ Y IP + D +S H+
Sbjct: 439 LENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYS-----HI 477
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 51.6 bits (123), Expect = 6e-07
Identities = 81/496 (16%), Positives = 144/496 (29%), Gaps = 178/496 (35%)
Query: 174 TTTR---ITHAS-------PAGTYSHSANRDWE-------ADTDREASVDCQD------- 209
+TR ++H S P ++ A++ E T+ A+ D
Sbjct: 4 YSTRPLTLSHGSLEHVLLVPTASFFI-ASQLQEQFNKILPEPTEGFAADDEPTTPAELVG 62
Query: 210 -----IASQLIKNHPGHMINVL-----------LGGG-----LKKFTLKKDGGQRLDEDL 248
++S + + G VL L G K + D ++L
Sbjct: 63 KFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKEL 122
Query: 249 LLAYERMRQHHNQTYKI---------VKTKQ-ELAAV-----NASTKF--LLGLF----- 286
+ Y R + + V +L A+ N F L L+
Sbjct: 123 IKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHV 182
Query: 287 --------ADSHLEYEVDKQVDKN-------------TKVKDQPSLTEMTQKA-----IE 320
+ L + +D + P + I
Sbjct: 183 LVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIG 242
Query: 321 VLSKNQNGFYLFVEEVL-LS---IRQQLSGASN-SQRHATASMVTHPDTNHANQNPSSNE 375
V+ Q Y+ ++L + +R L GA+ SQ TA + D+ S
Sbjct: 243 VI---QLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSW-----ESFFV 294
Query: 376 NLVSGGKID--IGHHGNKA--KKALTETIEFDN--------------------AIKKALQ 411
++ + IG +A +L +I D+ ++ +
Sbjct: 295 SVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVN 354
Query: 412 ITN---PDETLIVV----TADHSHTFTIAGYPD--RG-NKILERVRYDGHDLLGLD--KL 459
TN P + + A + ++G P G N L + + GLD ++
Sbjct: 355 KTNSHLPAGKQVEISLVNGAKN---LVVSGPPQSLYGLNLTLRKAKAPS----GLDQSRI 407
Query: 460 P-----------YLTLGYNNGPGF-----RPAERNGYRHDINLD-KTDDKDYRIPS-GIP 501
P +L + P F PA IN D ++ + IP
Sbjct: 408 PFSERKLKFSNRFLPVA---SP-FHSHLLVPAS-----DLINKDLVKNNVSFNAKDIQIP 458
Query: 502 LEYETHGGEDVAVFSN 517
+ Y+T G D+ V S
Sbjct: 459 V-YDTFDGSDLRVLSG 473
Score = 47.0 bits (111), Expect = 2e-05
Identities = 50/303 (16%), Positives = 92/303 (30%), Gaps = 121/303 (39%)
Query: 187 YSHS--ANRDWE-ADTDREA----SVDCQDIASQLIKNHPGHMINVLLGGGLKKFTLKKD 239
Y S A W AD + S+ DI + N+P ++ + GG +
Sbjct: 1636 YKTSKAAQDVWNRADNHFKDTYGFSI--LDI----VINNPVNLT-IHFGG---------E 1679
Query: 240 GGQRLDEDLL-LAYERMRQHHNQTYKIVKTKQELAAVNASTKFLLGLFADSHLEYEVDKQ 298
G+R+ E+ + +E + +T KI K +N + + + +K
Sbjct: 1680 KGKRIRENYSAMIFETIVDGKLKTEKIFKE------INEHS---------TSYTFRSEK- 1723
Query: 299 VDKNTKVKDQPSLTEMTQKAI--------EVLSKNQN------------GFY-------- 330
S T+ TQ A+ E L G Y
Sbjct: 1724 --------GLLSATQFTQPALTLMEKAAFEDLKSKGLIPADATFAGHSLGEYAALASLAD 1775
Query: 331 -LFVEEV--LLSIR---QQLSGASNSQRHATASMVT-HP--------------------- 362
+ +E + ++ R Q++ + + M+ +P
Sbjct: 1776 VMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGK 1835
Query: 363 DTNH----ANQNPSSNENLVSGGKIDIGHHGNKAKKALTETIEFDNAIKK----ALQITN 414
T N N N+ V+ G + +A +T + F ++K LQ +
Sbjct: 1836 RTGWLVEIVNYN-VENQQYVAAGDL-------RALDTVTNVLNF-IKLQKIDIIELQKSL 1886
Query: 415 PDE 417
E
Sbjct: 1887 SLE 1889
Score = 37.7 bits (87), Expect = 0.012
Identities = 44/278 (15%), Positives = 93/278 (33%), Gaps = 75/278 (26%)
Query: 339 SIRQQLSGASNSQRHAT------ASMVTHPDTNHANQN-PSSNENLVSGGKIDIGHHGNK 391
S+ L + S A+ ++ P A + P++ LV GK +G+ +
Sbjct: 15 SLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELV--GKF-LGYVSSL 71
Query: 392 AKKALTETIEFDNAIKKALQITNPDETLIVVTADHSHTFTIAGYPDRGNKILER---VR- 447
+ + + +FD + L E + D H + +++ ++
Sbjct: 72 VEPS--KVGQFDQVLNLCL---TEFENCYLEGND-IHALAAKLLQENDTTLVKTKELIKN 125
Query: 448 -YDGHDLLGLDKLPYLTLGYNNGPGFRPAERNGYRHDINL-DKTDDKDYRIPS-----GI 500
+ RP ++ + + L + + ++ + G
Sbjct: 126 YITARIMAK-----------------RPFDK---KSNSALFRAVGEGNAQLVAIFGGQGN 165
Query: 501 PLE--------YETHGG--EDVAVFSNGPWAHLL--VGNFEQNY---IPIV--MAYAARI 543
+ Y+T+ D+ FS + L+ + E+ + + I+ + +
Sbjct: 166 TDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNT 225
Query: 544 GPAKDVPLVSAAVSAGPTETLLIAVVSL----VVCKFL 577
P KD L+S +S P LI V+ L V K L
Sbjct: 226 -PDKDY-LLSIPIS-CP----LIGVIQLAHYVVTAKLL 256
>2zkt_A 2,3-bisphosphoglycerate-independent phosphoglycer mutase;
phosphonopyruvate decarboxylase, isomerase, structural
genom NPPSFA; 2.40A {Pyrococcus horikoshii}
Length = 412
Score = 38.1 bits (88), Expect = 0.008
Identities = 26/96 (27%), Positives = 35/96 (36%), Gaps = 25/96 (26%)
Query: 384 DIGHHGN-KAKKALTETIEFDNAIKKALQITNPDETLIVVTADHS-------HT-----F 430
GH K K L E D I L + +E +I +T DHS H+
Sbjct: 306 AAGHDNKPKLKAELIERA--DRMIGYILDHVDLEEVVIAITGDHSTPCEVMNHSGDPVPL 363
Query: 431 TIAG---YPDRGNKILER-------VRYDGHDLLGL 456
IAG D + ER R GHD++ +
Sbjct: 364 LIAGGGVRTDDTKRFGEREAMKGGLGRIRGHDIVPI 399
>3kd8_A 2,3-bisphosphoglycerate-independent phosphoglycerate mutase;
structural genomics, PSI-2, protein genomics, MCSG,
glycolysis isomerase; 2.60A {Thermoplasma acidophilum}
PDB: 3idd_A
Length = 399
Score = 35.9 bits (82), Expect = 0.038
Identities = 19/93 (20%), Positives = 32/93 (34%), Gaps = 26/93 (27%)
Query: 386 GHHGNKAKKALTETIE-FDNAIKKALQITNPDETLIVVTADHS-------HT-----FTI 432
GH GN K + IE D A++ I D +I VT DHS H+
Sbjct: 305 GHDGNYPLKR--DVIEDIDRAMEPLKSI--GDHAVICVTGDHSTPCSFKDHSGDPVPIVF 360
Query: 433 AGYPDRGNKILE---------RVRYDGHDLLGL 456
+ + +R ++++ +
Sbjct: 361 YTDGVMNDGVHLFDELSSASGSLRITSYNVMDI 393
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 33.4 bits (75), Expect = 0.089
Identities = 13/53 (24%), Positives = 18/53 (33%), Gaps = 25/53 (47%)
Query: 269 KQELAAVNASTKFLLGLFA-DSHLEYEVDKQVDKNTKVKDQPSLTEMTQKAIE 320
KQ L + AS K L+A DS P+L + +E
Sbjct: 19 KQALKKLQASLK----LYADDS------------------APALA--IKATME 47
>1iak_A MHC class II I-AK; histocompatibility antigen, peptide complex,
histocompa antigen I-AK; HET: NAG; 1.90A {Mus musculus}
SCOP: b.1.1.2 d.19.1.1 PDB: 1d9k_C* 1k2d_A* 1jl4_A
2pxy_C 1u3h_C 2z31_C 1muj_A* 1lnu_A* 3c5z_C 3c60_C
3c6l_C 3rdt_C 2iad_A 1iao_A 1es0_A 3cup_A* 3mbe_A*
1f3j_A*
Length = 199
Score = 30.5 bits (69), Expect = 1.1
Identities = 10/36 (27%), Positives = 17/36 (47%)
Query: 422 VTADHSHTFTIAGYPDRGNKILERVRYDGHDLLGLD 457
+ ADH ++ I Y G+ +DG +L +D
Sbjct: 4 IEADHVGSYGITVYQSPGDIGQYTFEFDGDELFYVD 39
>2p24_A H-2 class II histocompatibility antigen, A-U ALPH; MHC, I-AU,
immunoglobulin fold, MBP, immune system; 2.15A {Mus
musculus} SCOP: b.1.1.2 d.19.1.1
Length = 236
Score = 29.4 bits (66), Expect = 2.8
Identities = 10/36 (27%), Positives = 17/36 (47%)
Query: 422 VTADHSHTFTIAGYPDRGNKILERVRYDGHDLLGLD 457
+ ADH ++ I Y G+ +DG +L +D
Sbjct: 34 IEADHVGSYGIVVYQSPGDIGQYTFEFDGDELFYVD 69
>2gso_A Phosphodiesterase-nucleotide pyrophosphatase; alpha beta, NPP,
hydrolase; 1.30A {Xanthomonas axonopodis PV} PDB: 2gsn_A
2gsu_A* 2rh6_A*
Length = 393
Score = 29.3 bits (65), Expect = 3.3
Identities = 13/53 (24%), Positives = 21/53 (39%), Gaps = 5/53 (9%)
Query: 384 DIGH-HGNKAKKALTETIEFDNAIKKALQITN----PDETLIVVTADHSHTFT 431
+ GH HG ++++ D AI + L T I+V +DH
Sbjct: 172 EAGHDHGPESRQYADAVRAVDAAIGRLLAGMQRDGTRARTNIIVVSDHGMAEV 224
>2p6h_A Hypothetical protein; structural genomics, unknown function,
NPPSFA, national PROJ protein structural and functional
analyses; 1.95A {Aeropyrum pernix}
Length = 134
Score = 28.1 bits (62), Expect = 4.2
Identities = 8/58 (13%), Positives = 17/58 (29%), Gaps = 7/58 (12%)
Query: 314 MTQKAIEVLSKNQNGFYLFVEEVLLSIRQQLSGASN-----SQRHATASMVTHPDTNH 366
M + V ++ + +V + G N H TA++ +
Sbjct: 1 METGSFTVKTERRLQVLDVTGKVEEWLST--VGGVNGLLVVYVPHTTAAVAVNEAEPR 56
>1yvu_A Hypothetical protein AQ_1447; RNAse H fold, RNA binding protein,
gene regulation; 2.90A {Aquifex aeolicus} SCOP:
b.34.14.1 c.55.3.10 PDB: 2f8s_A 2f8t_A 2nub_A
Length = 706
Score = 29.3 bits (65), Expect = 4.2
Identities = 6/39 (15%), Positives = 13/39 (33%)
Query: 404 NAIKKALQITNPDETLIVVTADHSHTFTIAGYPDRGNKI 442
A KK ++ L+ + ++ F +G
Sbjct: 580 AAFKKYGELYGYSLELLEIIKRNNPRFFSNEKFIKGYFY 618
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty
acid synthase, acyl-carrier-protein, beta-ketoacyl RED
beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces
cerevisiae}
Length = 1688
Score = 29.5 bits (66), Expect = 4.5
Identities = 13/45 (28%), Positives = 17/45 (37%), Gaps = 9/45 (20%)
Query: 11 RVGADGGGGGNGGASNINEQ--------EKQNKFWIDSAINTLIS 47
VG G G GG S + QN +S INT+ +
Sbjct: 1043 EVGN-CSGSGMGGVSALRGMFKDRFKDEPVQNDILQESFINTMSA 1086
>3b98_A Prostaglandin I2 synthase; prostacyclin synthase, cytochrome P450
8A1, CYP8A1, isomerase; HET: HEM; 2.08A {Danio rerio}
PDB: 3b99_A*
Length = 475
Score = 28.8 bits (65), Expect = 5.2
Identities = 12/72 (16%), Positives = 19/72 (26%), Gaps = 18/72 (25%)
Query: 441 KILERVR--YDGHDLL----GLDKLPYL------TLG-YNNGPGFRPAERNGYRHDINLD 487
+ L VR G L P TL R D +
Sbjct: 285 EALRAVREEIQGGKHLRLEERQKNTPVFDSVLWETLRLTAAALITRDV-----TQDKKIC 339
Query: 488 KTDDKDYRIPSG 499
++ ++Y + G
Sbjct: 340 LSNGQEYHLRRG 351
>2w8d_A Processed glycerol phosphate lipoteichoic acid SY; transferase,
phosphatase, cell membrane, transmembrane, LTA,
membrane, secreted, cell WALL; HET: TPO PG4; 2.35A
{Bacillus subtilis}
Length = 436
Score = 28.3 bits (63), Expect = 8.4
Identities = 31/166 (18%), Positives = 48/166 (28%), Gaps = 42/166 (25%)
Query: 382 KIDIGHHGNKAKKALTETIEF-DNAIK----KALQITNPDETLIVVTADHSHTFTIAG-- 434
G G+ ++ + D +I+ + D+++IV+ DH
Sbjct: 210 DFPAGDFGDSVVDNYFQSAHYLDQSIEQFFNDLKKDGLYDKSIIVMYGDHYGISENHNKA 269
Query: 435 ---------YPDRGNKILERV---------------RYDGH--------DLLGLDKLPYL 462
D N L+RV +Y G LLG+D YL
Sbjct: 270 MAKVLGKDEITDYDNAQLQRVPLFIHAAGVKGEKVHKYAGDVDVAPTILHLLGVDTKDYL 329
Query: 463 TLGYN---NGPGFRPAERNGYRHDINLDKTDDKDYRIPSGIPLEYE 505
G + RNG K K Y +G L+
Sbjct: 330 MSGSDILSKEHREVIPFRNGDFISPKYTKISGKYYDTKTGKELDES 375
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein,
ATP-binding, nucleotide-binding, HYD; 2.20A
{Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Length = 574
Score = 28.1 bits (63), Expect = 9.8
Identities = 5/23 (21%), Positives = 13/23 (56%), Gaps = 1/23 (4%)
Query: 59 KNIILFLGDGMGVSTHTAARIYQ 81
+ ++ L G+G++ + A R +
Sbjct: 8 RRLLAGL-QGLGLTINQAQRAVK 29
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.314 0.132 0.384
Gapped
Lambda K H
0.267 0.0643 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 8,787,126
Number of extensions: 535892
Number of successful extensions: 941
Number of sequences better than 10.0: 1
Number of HSP's gapped: 888
Number of HSP's successfully gapped: 41
Length of query: 582
Length of database: 6,701,793
Length adjustment: 99
Effective length of query: 483
Effective length of database: 3,937,614
Effective search space: 1901867562
Effective search space used: 1901867562
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 60 (27.1 bits)