RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy16916
(582 letters)
>d1zeda1 c.76.1.1 (A:1-479) Alkaline phosphatase {Human (Homo
sapiens) [TaxId: 9606]}
Length = 479
Score = 423 bits (1089), Expect = e-144
Identities = 214/534 (40%), Positives = 288/534 (53%), Gaps = 78/534 (14%)
Query: 29 EQEKQNKFWIDSAINTLISRTHLQPNTKKAKNIILFLGDGMGVSTHTAARIYQGQLNGQN 88
+E+ FW A L + LQP AKN+I+FLGDGMGVST TAARI +GQ +
Sbjct: 4 VEEENPDFWNREAAEALGAAKKLQPAQTAAKNLIIFLGDGMGVSTVTAARILKGQKKDKL 63
Query: 89 GEENSLNFEKFPYTGLSKTYCVDSQVADSACTSTAYTNGVKGSIGTLGLNGRVLYRDCKG 148
G E L ++FPY LSKTY VD V DS T+TAY GVKG+ T+GL+ + C
Sbjct: 64 GPEIPLAMDRFPYVALSKTYNVDKHVPDSGATATAYLCGVKGNFQTIGLSAAARFNQCNT 123
Query: 149 SKDNTTHTESIIHWAIKAGKSTGVVTTTRITHASPAGTYSHSANRDWEADTDREASVD-- 206
++ N S+++ A KAGKS GVVTTTR+ HASPAGTY+H+ NR+W +D D AS
Sbjct: 124 TRGN--EVISVMNRAKKAGKSVGVVTTTRVQHASPAGTYAHTVNRNWYSDADVPASARQE 181
Query: 207 -CQDIASQLIKNHPGHMINVLLGGGLKKFTLK-----------KDGGQRLDEDLLLAYER 254
CQDIA+QLI I+V+LGGG K GG RLD L+ E
Sbjct: 182 GCQDIATQLI---SNMDIDVILGGGRKYMFRMGTPDPEYPDDYSQGGTRLDGKNLVQ-EW 237
Query: 255 MRQHHNQTYKIVKTKQELAAVNASTKFLLGLFADSHLEYEVDKQVDKNTKVKDQPSLTEM 314
+ + Y +T+ A+++ S L+GLF ++YE+ + PSL EM
Sbjct: 238 LAKRQGARYVWNRTELMQASLDPSVTHLMGLFEPGDMKYEIHRDST------LDPSLMEM 291
Query: 315 TQKAIEVLSKNQNGFYLFVEEVLLSIRQQLSGASNSQRHATASMVTHPDTNHANQNPSSN 374
T+ A+ +LS+N GF+LFVE
Sbjct: 292 TEAALRLLSRNPRGFFLFVE---------------------------------------- 311
Query: 375 ENLVSGGKIDIGHHGNKAKKALTETIEFDNAIKKALQITNPDETLIVVTADHSHTFTIAG 434
GG+ID GHH ++A +ALTETI FD+AI++A Q+T+ ++TL +VTADHSH F+ G
Sbjct: 312 -----GGRIDHGHHESRAYRALTETIMFDDAIERAGQLTSEEDTLSLVTADHSHVFSFGG 366
Query: 435 YPDRGNKILERVRYDGHDLLGLDKLPYLTLGYNNGPGFRPAERNGYRHDINLDKTDDKDY 494
YP RG+ I D+ Y L Y NGPG+ ++G R D+ ++ +Y
Sbjct: 367 YPLRGSSIFGLA-----PGKARDRKAYTVLLYGNGPGY--VLKDGARPDVTESESGSPEY 419
Query: 495 RIPSGIPLEYETHGGEDVAVFSNGPWAHLLVGNFEQNYIPIVMAYAARIGPAKD 548
R S +PL+ ETH GEDVAVF+ GP AHL+ G EQ +I VMA+AA + P
Sbjct: 420 RQQSAVPLDEETHAGEDVAVFARGPQAHLVHGVQEQTFIAHVMAFAACLEPYTA 473
>d1k7ha_ c.76.1.1 (A:) Alkaline phosphatase {Northern shrimp
(Pandalus borealis) [TaxId: 6703]}
Length = 476
Score = 418 bits (1076), Expect = e-142
Identities = 200/532 (37%), Positives = 294/532 (55%), Gaps = 71/532 (13%)
Query: 31 EKQNKFWIDSAINTLISRTHLQPNTKKAKNIILFLGDGMGVSTHTAARIYQGQLNGQNGE 90
E+ +W A + L + ++ K+AKN+I FLGDGM +ST TAARIY+G L G+
Sbjct: 1 EEDKAYWNKDAQDALDKQLGIKLREKQAKNVIFFLGDGMSLSTVTAARIYKGGLTGKFER 60
Query: 91 ENSLNFEKFPYTGLSKTYCVDSQVADSACTSTAYTNGVKGSIGTLGLNGRVLYRDCKGSK 150
E +++E+F + LSKTY D QV DSA ++TAY GVK + G +GL+ + +C
Sbjct: 61 EK-ISWEEFDFAALSKTYNTDKQVTDSAASATAYLTGVKTNQGVIGLDANTVRTNCSYQL 119
Query: 151 DNTTHTESIIHWAIKAGKSTGVVTTTRITHASPAGTYSHSANRDWEADTD----REASVD 206
D + T SI HW +AG+STGVVT+TR+THA+PAGTY+H A+RDWE D+D RE
Sbjct: 120 DESLFTYSIAHWFQEAGRSTGVVTSTRVTHATPAGTYAHVADRDWENDSDVVHDREDPEI 179
Query: 207 CQDIASQLIKNHPGHMINVLLGGGLKKFTLKKD-------GGQRLD-EDLLLAYERMRQH 258
C DIA QL+ PG V++GGG + F ++ G+R D + L+ + +
Sbjct: 180 CDDIAEQLVFREPGKNFKVIMGGGRRGFFPEEALDIEDGIPGEREDGKHLITDWLDDKAS 239
Query: 259 HNQTYKIVKTKQELAAVN-ASTKFLLGLFADSHLEYEVDKQVDKNTKVKDQPSLTEMTQK 317
T V + +L AV+ A+T +L+GLF+ +HL+ + + + P+L EMT+
Sbjct: 240 QGATASYVWNRDDLLAVDIANTDYLMGLFSYTHLDTVLTRDAE------MDPTLPEMTKV 293
Query: 318 AIEVLSKNQNGFYLFVEEVLLSIRQQLSGASNSQRHATASMVTHPDTNHANQNPSSNENL 377
AIE+L+K++NGF+L VE
Sbjct: 294 AIEMLTKDENGFFLLVE------------------------------------------- 310
Query: 378 VSGGKIDIGHHGNKAKKALTETIEFDNAIKKALQITNPDETLIVVTADHSHTFTIAGYPD 437
GG+ID HH N+ +++L ET++ + A+ AL +T+P+ET+I+VTADH HT TI GY D
Sbjct: 311 --GGRIDHMHHANQIRQSLAETLDMEEAVSMALSMTDPEETIILVTADHGHTLTITGYAD 368
Query: 438 RGNKILERVRYDGHDLLGLDKLPYLTLGYNNGPGFRPAERNGYRHDINLDKTDDKDYRIP 497
R IL+ + LD Y L Y +GPG+ E +G R++ + D ++R
Sbjct: 369 RNTDILDFA-----GISDLDDRRYTILDYGSGPGYHITE-DGKRYEPTEEDLKDINFRYA 422
Query: 498 SGIPLEYETHGGEDVAVFSNGPWAHLLVGNFEQNYIPIVMAYAARIGPAKDV 549
S P TH G DV ++ NGP+AHL G +E+NYIP +AYAA +G +
Sbjct: 423 SAAPKHSATHDGTDVGIWVNGPFAHLFTGVYEENYIPHALAYAACVGTGRTF 474
>d1y6va1 c.76.1.1 (A:1-449) Alkaline phosphatase {Escherichia coli
[TaxId: 562]}
Length = 449
Score = 310 bits (796), Expect = e-101
Identities = 121/517 (23%), Positives = 184/517 (35%), Gaps = 133/517 (25%)
Query: 52 QPNTKKAKNIILFLGDGMGVSTHTAARIYQGQLNGQN-GEENSLNFEKFPYTGLSKTYCV 110
+ K AKNIIL +GDGMG S TAAR Y G G + ++ + L+K
Sbjct: 36 SLSDKPAKNIILLIGDGMGDSEITAARNYAEGAGGFFKGIDALPLTGQYTHYALNKKTGK 95
Query: 111 DSQVADSACTSTAYTNGVKGSIGTLGLNGRVLYRDCKGSKDNTTHTESIIHWAIKAGKST 170
V DSA ++TA++ GVK G LG++ + +I+ A AG +T
Sbjct: 96 PDYVTDSAASATAWSTGVKTYNGALGVD------------IHEKDHPTILEMAKAAGLAT 143
Query: 171 GVVTTTRITHASPAGTYSHSANRDWEADTDREASV--------DCQDIASQLIKNHPGHM 222
G V+T + A+PA +H +R + I QL+
Sbjct: 144 GNVSTAELQDATPAALVAHVTSRKCYGPSATSEKCPGNALEKGGKGSITEQLLNA----R 199
Query: 223 INVLLGGGLKKFTLKKDGGQRLDEDLLLAYERMRQHHNQTYKIVKTKQELAAVNA--STK 280
+V LGGG K F G+ + L Q + Y++V L +V K
Sbjct: 200 ADVTLGGGAKTFAETATAGEWQGKTL------REQAQARGYQLVSDAASLNSVTEANQQK 253
Query: 281 FLLGLFADSHLEYEVDKQVDKNTKVKD---------------QPSLTEMTQKAIEVLSKN 325
LLGLFAD ++ D P+L +MT KAIE+LSKN
Sbjct: 254 PLLGLFADGNMPVRWLGPKATYHGNIDKPAVTCTPNPQRNDSVPTLAQMTDKAIELLSKN 313
Query: 326 QNGFYLFVEEVLLSIRQQLSGASNSQRHATASMVTHPDTNHANQNPSSNENLVSGGKIDI 385
+ GF+L VE G ID
Sbjct: 314 EKGFFLQVE---------------------------------------------GASIDK 328
Query: 386 GHHGNKAKKALTETIEFDNAIKKALQITNPD-ETLIVVTADHSHTFTIAGYPDRGNKILE 444
H + ET++ D A+++AL+ + TL++VTADH+H I + + +
Sbjct: 329 QDHAANPCGQIGETVDLDEAVQRALEFAKKEGNTLVIVTADHAHASQIVAPDTKAPGLTQ 388
Query: 445 RVRYDGHDLLGLDKLPYLTLGYNNGPGFRPAERNGYRHDINLDKTDDKDYRIPSGIPLEY 504
+ + + Y N +
Sbjct: 389 ALNTKD--------GAVMVMSYGNS-------------------------------EEDS 409
Query: 505 ETHGGEDVAVFSNGPWAHLLVGNFEQNYIPIVMAYAA 541
+ H G + + + GP A +VG +Q + M A
Sbjct: 410 QEHTGSQLRIAAYGPHAANVVGLTDQTDLFYTMKAAL 446
>d1oe4a_ c.18.1.3 (A:) Single-strand selective monofunctional
uracil-DNA glycosylase SMUG1 {African clawed frog
(Xenopus laevis) [TaxId: 8355]}
Length = 245
Score = 29.4 bits (66), Expect = 0.92
Identities = 14/37 (37%), Positives = 18/37 (48%), Gaps = 4/37 (10%)
Query: 162 WAIKAGKSTGV-VTTTRITHASPAGTYSHSANRDWEA 197
A KA + G+ VT I H SP + AN+ WE
Sbjct: 196 RARKALMAEGIDVTVKGIMHPSPR---NPQANKGWEG 229
>d1n4wa2 d.16.1.1 (A:319-450) Cholesterol oxidase {Streptomyces sp.
[TaxId: 1931]}
Length = 132
Score = 28.7 bits (64), Expect = 0.93
Identities = 15/58 (25%), Positives = 21/58 (36%), Gaps = 5/58 (8%)
Query: 151 DNTTHTESIIHWAIKAGKSTGVVTTTRITHASPAGTYSHSANRD-----WEADTDREA 203
DN+ + + AG T V IT GT+ + A D W D + A
Sbjct: 34 DNSDSSVFAEIAPMPAGLETWVSLYLAITKNPQRGTFVYDAATDRAKLNWTRDQNAPA 91
>d1yvua2 c.55.3.10 (A:315-706) Argonaute homologue Aq_1447 {Aquifex
aeolicus [TaxId: 63363]}
Length = 392
Score = 29.9 bits (67), Expect = 0.97
Identities = 6/39 (15%), Positives = 13/39 (33%)
Query: 404 NAIKKALQITNPDETLIVVTADHSHTFTIAGYPDRGNKI 442
A KK ++ L+ + ++ F +G
Sbjct: 266 AAFKKYGELYGYSLELLEIIKRNNPRFFSNEKFIKGYFY 304
>d1bf5a1 a.47.1.1 (A:136-316) STAT-1, coiled coil domain {Human
(Homo sapiens) [TaxId: 9606]}
Length = 181
Score = 27.9 bits (62), Expect = 2.3
Identities = 12/58 (20%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Query: 295 VDKQVDKNTKVKDQPSLTEMTQKAIEVLSKNQNGFYLFVEEVLLSIRQQLSGASNSQR 352
+DKQ + ++KV++ + I+ L Q+ + F + L + + +G + S +
Sbjct: 1 LDKQKELDSKVRNVKDKVMCIEHEIKSLEDLQDEY-DFKCKTLQNREHETNGVAKSDQ 57
>d3coxa2 d.16.1.1 (A:319-450) Cholesterol oxidase {Brevibacterium
sterolicum [TaxId: 1702]}
Length = 132
Score = 26.3 bits (58), Expect = 5.3
Identities = 8/58 (13%), Positives = 16/58 (27%), Gaps = 5/58 (8%)
Query: 151 DNTTHTESIIHWAIKAGKSTGVVTTTRITHASPAGTYSHSANRD-----WEADTDREA 203
+ T + AG T V IT + ++ W +++
Sbjct: 34 ADPTAPIFAEIAPLPAGLETYVSLYLAITKNPERARFQFNSGTGKVDLTWAQSQNQKG 91
>d1oafa_ a.93.1.1 (A:) Ascorbate peroxidase {Soybean (Glycine max)
[TaxId: 3847]}
Length = 250
Score = 27.0 bits (59), Expect = 6.2
Identities = 9/44 (20%), Positives = 12/44 (27%), Gaps = 4/44 (9%)
Query: 2 HDFSQFRDYRVGADGGGGGNGGASNINEQEKQNKFWIDSAINTL 45
H F GG G + E +D A+ L
Sbjct: 42 HSAGTFD----KGTKTGGPFGTIKHPAELAHSANNGLDIAVRLL 81
>d2f09a1 b.61.8.1 (A:1-82) Hypothetical protein YdhA {Escherichia
coli [TaxId: 562]}
Length = 82
Score = 25.3 bits (55), Expect = 6.5
Identities = 7/27 (25%), Positives = 11/27 (40%)
Query: 120 TSTAYTNGVKGSIGTLGLNGRVLYRDC 146
T Y KG T+ R++ +C
Sbjct: 49 TDGIYVFWSKGDEATVYKRDRIVLNNC 75
>d1t27a_ d.129.3.4 (A:) Phoshatidylinositol transfer protein, PITP
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 269
Score = 26.3 bits (58), Expect = 9.0
Identities = 15/48 (31%), Positives = 20/48 (41%), Gaps = 19/48 (39%)
Query: 492 KDYRIPSGIPL---EY--------------ETHGGEDVAVFSNGPWAH 522
K+YR+ +P+ EY ET GGE V V N P+
Sbjct: 4 KEYRVI--LPVSVDEYQVGQLYSVAEASKNETGGGEGVEVLVNEPYEK 49
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.314 0.132 0.384
Gapped
Lambda K H
0.267 0.0625 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,084,117
Number of extensions: 95571
Number of successful extensions: 211
Number of sequences better than 10.0: 1
Number of HSP's gapped: 194
Number of HSP's successfully gapped: 18
Length of query: 582
Length of database: 2,407,596
Length adjustment: 90
Effective length of query: 492
Effective length of database: 1,171,896
Effective search space: 576572832
Effective search space used: 576572832
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 55 (25.2 bits)