Query psy16921
Match_columns 235
No_of_seqs 102 out of 1123
Neff 5.9
Searched_HMMs 46136
Date Fri Aug 16 17:07:23 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16921.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/16921hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1304|consensus 100.0 4.3E-37 9.3E-42 291.0 6.0 184 1-233 134-317 (449)
2 PTZ00206 amino acid transporte 99.9 2.3E-27 5E-32 226.6 9.0 190 1-234 131-333 (467)
3 KOG1303|consensus 99.9 4.1E-27 8.9E-32 223.8 6.1 184 1-231 115-299 (437)
4 PF01490 Aa_trans: Transmembra 99.9 6.6E-27 1.4E-31 215.1 -4.3 191 1-234 78-269 (409)
5 PLN03074 auxin influx permease 99.8 2.4E-21 5.3E-26 185.9 5.0 178 1-234 130-309 (473)
6 KOG4303|consensus 99.7 6.3E-20 1.4E-24 169.3 -5.3 178 4-234 199-376 (524)
7 KOG1305|consensus 99.7 6.2E-19 1.4E-23 166.8 -4.3 188 1-234 77-270 (411)
8 COG0814 SdaC Amino acid permea 99.6 1.3E-15 2.9E-20 144.1 6.9 187 1-234 82-269 (415)
9 TIGR00837 araaP aromatic amino 98.2 1.5E-06 3.2E-11 80.4 4.2 169 1-219 69-238 (381)
10 PF03222 Trp_Tyr_perm: Tryptop 97.4 0.00021 4.6E-09 67.6 4.8 160 1-210 75-235 (394)
11 PRK10483 tryptophan permease; 97.0 0.00064 1.4E-08 65.1 4.2 160 1-210 83-243 (414)
12 PRK15132 tyrosine transporter 96.6 0.0033 7.2E-08 59.9 5.6 163 1-216 75-238 (403)
13 PRK09664 tryptophan permease T 96.5 0.0052 1.1E-07 58.9 6.2 162 1-209 81-243 (415)
14 TIGR00814 stp serine transport 96.1 0.0077 1.7E-07 57.2 5.1 174 1-221 76-255 (397)
15 PRK13629 threonine/serine tran 95.8 0.039 8.4E-07 53.5 8.0 179 1-219 92-279 (443)
16 TIGR00909 2A0306 amino acid tr 95.7 0.079 1.7E-06 49.6 9.8 58 155-215 194-251 (429)
17 TIGR00906 2A0303 cationic amin 95.1 0.18 3.9E-06 49.8 10.3 54 156-213 231-285 (557)
18 PF13520 AA_permease_2: Amino 93.9 0.042 9.1E-07 51.2 2.8 60 157-221 189-248 (426)
19 PRK11021 putative transporter; 93.6 0.45 9.8E-06 44.5 9.2 55 155-213 176-231 (410)
20 TIGR00908 2A0305 ethanolamine 93.6 0.65 1.4E-05 43.8 10.2 52 157-212 192-244 (442)
21 TIGR00912 2A0309 spore germina 93.4 0.14 3.1E-06 46.9 5.3 57 164-224 187-243 (359)
22 KOG1287|consensus 93.3 1.2 2.7E-05 43.6 11.7 57 155-214 203-259 (479)
23 PRK10655 potE putrescine trans 92.9 0.37 8E-06 45.4 7.5 54 157-214 190-244 (438)
24 TIGR00930 2a30 K-Cl cotranspor 92.5 1.1 2.3E-05 47.5 10.8 52 158-212 282-333 (953)
25 TIGR00905 2A0302 transporter, 92.1 0.49 1.1E-05 45.3 7.3 56 156-215 199-254 (473)
26 PRK10435 cadB lysine/cadaverin 92.0 0.37 8.1E-06 45.6 6.3 57 155-215 186-243 (435)
27 PRK10644 arginine:agmatin anti 91.5 0.69 1.5E-05 43.8 7.5 55 157-214 192-246 (445)
28 TIGR00911 2A0308 L-type amino 91.3 0.78 1.7E-05 44.2 7.7 56 155-214 234-290 (501)
29 PRK11357 frlA putative fructos 91.2 1.1 2.3E-05 42.5 8.4 55 156-213 195-249 (445)
30 TIGR03810 arg_ornith_anti argi 91.1 2.3 4.9E-05 40.7 10.6 59 157-219 196-254 (468)
31 PF03845 Spore_permease: Spore 90.0 0.81 1.8E-05 41.5 6.2 65 155-223 174-238 (320)
32 COG0531 PotE Amino acid transp 89.9 1.1 2.3E-05 41.9 7.1 60 157-220 202-262 (466)
33 TIGR01773 GABAperm gamma-amino 89.9 2.4 5.1E-05 40.2 9.5 54 156-213 201-255 (452)
34 PRK10580 proY putative proline 88.3 3.2 6.9E-05 39.5 9.2 52 157-212 200-252 (457)
35 PRK10746 putative transport pr 87.6 3.4 7.4E-05 39.6 9.0 56 155-213 199-254 (461)
36 TIGR00907 2A0304 amino acid pe 86.9 9.3 0.0002 36.5 11.5 57 160-219 221-277 (482)
37 PRK10238 aromatic amino acid t 86.9 3.7 8.1E-05 39.2 8.8 50 157-210 201-251 (456)
38 PRK10197 gamma-aminobutyrate t 86.5 5.2 0.00011 38.1 9.5 55 155-213 180-235 (446)
39 PF00324 AA_permease: Amino ac 86.1 1.4 3E-05 42.1 5.4 65 155-222 199-263 (478)
40 PRK10249 phenylalanine transpo 85.9 6 0.00013 37.8 9.6 56 155-213 208-263 (458)
41 TIGR03428 ureacarb_perm permea 85.5 5.5 0.00012 38.2 9.2 57 161-220 218-274 (475)
42 TIGR00910 2A0307_GadC glutamat 84.8 5.3 0.00012 38.9 8.8 47 161-211 199-246 (507)
43 TIGR00913 2A0310 amino acid pe 83.7 7.2 0.00016 37.2 9.1 54 156-212 197-250 (478)
44 TIGR00800 ncs1 NCS1 nucleoside 82.1 6.9 0.00015 37.3 8.2 40 2-41 87-126 (442)
45 PRK11049 D-alanine/D-serine/gl 79.3 4.5 9.7E-05 38.7 6.0 54 156-213 211-265 (469)
46 KOG1286|consensus 79.2 55 0.0012 32.8 13.7 55 155-212 231-285 (554)
47 PRK11387 S-methylmethionine tr 76.1 23 0.00049 33.9 9.8 54 157-214 207-261 (471)
48 COG1113 AnsP Gamma-aminobutyra 74.4 17 0.00037 35.6 8.4 65 154-221 201-270 (462)
49 TIGR02358 thia_cytX probable h 73.2 15 0.00032 34.6 7.6 73 1-76 68-140 (386)
50 PRK15238 inner membrane transp 66.9 11 0.00023 36.4 5.3 51 158-212 213-264 (496)
51 TIGR03813 put_Glu_GABA_T putat 66.5 11 0.00025 35.9 5.3 52 164-219 202-254 (474)
52 PRK10836 lysine transporter; P 65.3 7.7 0.00017 37.4 3.9 53 161-216 210-262 (489)
53 TIGR00796 livcs branched-chain 63.6 25 0.00054 33.4 7.0 56 1-62 265-320 (378)
54 PRK15049 L-asparagine permease 63.5 6.5 0.00014 38.2 3.1 52 160-215 224-276 (499)
55 PF05525 Branch_AA_trans: Bran 59.7 36 0.00079 33.0 7.4 56 1-62 271-326 (427)
56 COG1457 CodB Purine-cytosine p 59.5 31 0.00067 33.7 6.9 68 2-76 92-161 (442)
57 COG3949 Uncharacterized membra 47.3 44 0.00094 31.7 5.5 61 1-70 76-138 (349)
58 PHA02680 ORF090 IMV phosphoryl 42.0 69 0.0015 24.6 4.9 61 159-224 14-74 (91)
59 PRK15433 branched-chain amino 40.2 92 0.002 30.4 6.7 57 1-64 275-331 (439)
60 COG1114 BrnQ Branched-chain am 39.2 1.1E+02 0.0023 29.9 6.9 51 1-57 273-323 (431)
61 PF02468 PsbN: Photosystem II 37.0 38 0.00083 22.6 2.5 29 195-223 4-32 (43)
62 PRK11375 allantoin permease; P 34.7 1.5E+02 0.0033 28.8 7.4 39 2-40 100-139 (484)
63 KOG1289|consensus 32.1 1.8E+02 0.0039 29.3 7.4 62 157-221 253-314 (550)
64 PF02133 Transp_cyt_pur: Perme 27.2 36 0.00079 32.0 1.7 40 1-40 81-120 (440)
65 PRK13183 psbN photosystem II r 26.9 66 0.0014 21.8 2.4 29 195-223 7-35 (46)
66 PRK11017 codB cytosine permeas 26.7 2.9E+02 0.0063 26.0 7.7 57 1-64 81-137 (404)
67 CHL00020 psbN photosystem II p 26.1 56 0.0012 21.8 1.9 29 195-223 4-32 (43)
68 PF04835 Pox_A9: A9 protein co 23.6 1.5E+02 0.0034 20.6 3.8 28 196-223 25-52 (54)
69 PF11286 DUF3087: Protein of u 21.1 50 0.0011 28.1 1.2 47 184-230 7-53 (165)
No 1
>KOG1304|consensus
Probab=100.00 E-value=4.3e-37 Score=290.96 Aligned_cols=184 Identities=35% Similarity=0.738 Sum_probs=172.0
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhCCCCcchhHHHHHHHHHHHHHHhcccCcccccccchhhhhh
Q psy16921 1 MDSVNIIIVDFFIFWNHLGICCVYINFIADNFDQACHHFSPDTSLAKIHWELIITVVMIVLNQVKNLHFLSPFSSIESLI 80 (235)
Q Consensus 1 m~~~g~~~v~~~i~i~~~G~ci~YlI~~~d~l~~v~~~~~~~~~~~~~~~~~i~~vv~ipLs~i~~l~~Ls~~S~~~~~~ 80 (235)
.|+++|++|++++++.|+|+||+|++|++++++++.+.. .+..++.+.|+++..+++++++++||+|.|+++|++
T Consensus 134 ~g~~~r~~V~~~L~i~QlGfc~vY~VFva~nl~~i~~~~-~~~~~s~~~~i~~~~~~~lll~~Ir~Lk~Lsp~Sl~---- 208 (449)
T KOG1304|consen 134 YGPAARFVVNFFLVITQLGFCCVYLVFVATNLKQIVDEH-SPGVLSVRLYILIQLPPLLLLNLIRNLKILSPFSLF---- 208 (449)
T ss_pred hcHHHHHHHHHHHHHHHhchhhEEeeeHHhhHHHHHhcc-CCCCccHHHHHHHHHHHHHHHHHHHhhHHhhHHHHH----
Confidence 489999999999999999999999999999999999844 346789999999999999999999999999999999
Q ss_pred hhhccccccccccccccccCCCCCCchhhHHHhhhhhchhhhhhheeeeEEEEEeecCcCCCCCCCccccccccccchhH
Q psy16921 81 NQRSKAGTKVHSFSNLIKGVGSPSFNSESLIKRFRLLKCNILLTIGLGMVCYYIFRDGLDQPILRPGDVELFGKLYEVPL 160 (235)
Q Consensus 81 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (235)
||++.++|+.++.+|.+++. ++++|.+.+.++.++++
T Consensus 209 --------------------------------------Anv~~~~g~~ii~~y~~~~~-----~~~~~~~~~~~~~~~~l 245 (449)
T KOG1304|consen 209 --------------------------------------ANVFILVGLAIIMYYLVQDL-----PPTSDLPAVTGWSGLPL 245 (449)
T ss_pred --------------------------------------HHHHHHHHHHHHHHHHHhcc-----CCccccccccchhhhHH
Confidence 99999999999999998886 24578888888999999
Q ss_pred HHHHHHHHhccccchhhhhhhhcCCCCCCCCcchhhHHHHHHHHHHHHHHHhhhHhhcccCccccccccCCCC
Q psy16921 161 FMGTFLFASLGIGVLIALEDEMKTPSSYRKNPFGIFNMGFTTIIIIYLFVGVIGYYKYGQLVEGSITLNIPKD 233 (235)
Q Consensus 161 ~~G~~~faf~g~~~l~~I~~~m~~p~~~~~~~~~v~~~s~~~~~~~Y~~~g~~GY~afG~~v~~~Il~nlp~~ 233 (235)
++|+.+|||||+++++|+||+||+|++|+.. .++++.+|.+++++|..+|++||++|||+++++||+|+|++
T Consensus 246 f~GtaifafEGig~VLPlEn~Mk~P~~F~g~-~gVLn~~M~~V~~ly~~~Gf~GYl~fG~~v~~sITLNLP~~ 317 (449)
T KOG1304|consen 246 FFGTAIFAFEGIGMVLPLENSMKKPQKFPGP-FGVLNLGMGIVTLLYIFLGFFGYLAFGDDVKGSITLNLPQE 317 (449)
T ss_pred HHHHHHHHhccceEEEehhhcccChhhcCCc-cchHHHHHHHHHHHHHHHHHHHHhhccccccceEEecCCcc
Confidence 9999999999999999999999999999953 56999999999999999999999999999999999999993
No 2
>PTZ00206 amino acid transporter; Provisional
Probab=99.94 E-value=2.3e-27 Score=226.60 Aligned_cols=190 Identities=16% Similarity=0.187 Sum_probs=144.5
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhCCCCc----chhH-HHHHHHHHHHHHHhcccCcccccccch
Q psy16921 1 MDSVNIIIVDFFIFWNHLGICCVYINFIADNFDQACHHFSPDTS----LAKI-HWELIITVVMIVLNQVKNLHFLSPFSS 75 (235)
Q Consensus 1 m~~~g~~~v~~~i~i~~~G~ci~YlI~~~d~l~~v~~~~~~~~~----~~~~-~~~~i~~vv~ipLs~i~~l~~Ls~~S~ 75 (235)
+|++|++++++++.++++|.|++|++++||+++++++....... ..++ .+.++..++++|++++|++++|+++|.
T Consensus 131 ~G~~g~~~v~~~~~~~~~G~cv~YlIiigd~l~~~l~~~~~~~~~~~~~~~r~~~~~i~~~i~lPLs~~r~i~~L~~~S~ 210 (467)
T PTZ00206 131 LGPWGSYYVAATRAFHGFSACVAYVISVGDILSATLKGTNAPDFLKQKSGNRLLTSLMWLCFMLPLVIPRHIDSLRYVST 210 (467)
T ss_pred hCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccchhhhccCcEEeeeehhhhHhhhcccccchHHHHHHHH
Confidence 48999999999999999999999999999999999875421111 1122 234556778999999999999999999
Q ss_pred hhhhhhhhccccccccccccccccCCCCCCchhhHHHhhhhhchhhhhhheeeeEEEEEeecCcCCCCC-------CCcc
Q psy16921 76 IESLINQRSKAGTKVHSFSNLIKGVGSPSFNSESLIKRFRLLKCNILLTIGLGMVCYYIFRDGLDQPIL-------RPGD 148 (235)
Q Consensus 76 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~v~~~~~~~~~~~~~~-------~~~~ 148 (235)
+ +++++++..+.+.++.+.+..++..+ ...+
T Consensus 211 i------------------------------------------~~~~i~~~vi~ivi~~~~~~~~~~~~~~~~~~~~~~~ 248 (467)
T PTZ00206 211 I------------------------------------------AVSFMVYLVIVIVVHSCMNGLPENIKNVSVGKDDNAE 248 (467)
T ss_pred H------------------------------------------HHHHHHHHHhhhhhhhhcccCcccccccccCCCCCCc
Confidence 9 55554443333333333222111110 1123
Q ss_pred ccccccccchhHHHHHHHHHhccccchhhhhhhhcCCCCCCCCcchhhHHHHHHHHHHHHHHHhhhHhhcccCccccccc
Q psy16921 149 VELFGKLYEVPLFMGTFLFASLGIGVLIALEDEMKTPSSYRKNPFGIFNMGFTTIIIIYLFVGVIGYYKYGQLVEGSITL 228 (235)
Q Consensus 149 ~~~~~~~~~~~~~~G~~~faf~g~~~l~~I~~~m~~p~~~~~~~~~v~~~s~~~~~~~Y~~~g~~GY~afG~~v~~~Il~ 228 (235)
.+.|+...+.+.++|+++|||.||.+++|+++|||||++.++ .++...++.++.++|..+|++||++||++++++|+.
T Consensus 249 ~~~f~~~~~~~~algi~~faF~~h~~~~~i~~~M~~~t~~~~--~~v~~~s~~i~~~lY~~~G~~GYl~fG~~v~~~Ill 326 (467)
T PTZ00206 249 IILFNSGNRAIEGLGVFIFAYVFQITAYEVYMDMTNRSVGKF--VLASTIAMGMCFTMYVLTAFFGYMDFGRNVTGSVLL 326 (467)
T ss_pred eEEecCchHHHhhhhHHHhhhhhhhhhHHHHHhhcccchhHH--HHHHHHHHHHHHHHHHHHHHhhhhccccccchHHHH
Confidence 344544456789999999999999999999999999876555 458899999999999999999999999999999999
Q ss_pred cC-CCCC
Q psy16921 229 NI-PKDD 234 (235)
Q Consensus 229 nl-p~~~ 234 (235)
|+ |.+|
T Consensus 327 n~~p~~~ 333 (467)
T PTZ00206 327 MYDPVNE 333 (467)
T ss_pred hCCCCCC
Confidence 99 5655
No 3
>KOG1303|consensus
Probab=99.93 E-value=4.1e-27 Score=223.79 Aligned_cols=184 Identities=26% Similarity=0.430 Sum_probs=147.5
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhCCCC-cchhHHHHHHHHHHHHHHhcccCcccccccchhhhh
Q psy16921 1 MDSVNIIIVDFFIFWNHLGICCVYINFIADNFDQACHHFSPDT-SLAKIHWELIITVVMIVLNQVKNLHFLSPFSSIESL 79 (235)
Q Consensus 1 m~~~g~~~v~~~i~i~~~G~ci~YlI~~~d~l~~v~~~~~~~~-~~~~~~~~~i~~vv~ipLs~i~~l~~Ls~~S~~~~~ 79 (235)
+|+++|+++..++..+++|+|++|++..||++..+.+..+.+. ..++++|+++.+.+.+|++|+||++.++|+|..
T Consensus 115 fG~~~~~iv~~~~~~~~fg~~v~y~il~~~~L~~~~~~~~~~~~~l~~~~f~iif~~i~~~~s~lp~~~~l~~~S~~--- 191 (437)
T KOG1303|consen 115 FGPKGRLLVSVLQYLELFGICVVYIILAGDNLKALFPIVSLNDNSLDKQYFIIIFGLIVLPLSQLPNFHSLSYLSLV--- 191 (437)
T ss_pred hCCCceEeeeHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccceehhhhHHHHHHHHHHCCCcchhHHHHHH---
Confidence 4788899999999999999999999999999999999997665 566789999999999999999999999999999
Q ss_pred hhhhccccccccccccccccCCCCCCchhhHHHhhhhhchhhhhhheeeeEEEEEeecCcCCCCCCCccccccccccchh
Q psy16921 80 INQRSKAGTKVHSFSNLIKGVGSPSFNSESLIKRFRLLKCNILLTIGLGMVCYYIFRDGLDQPILRPGDVELFGKLYEVP 159 (235)
Q Consensus 80 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (235)
| .+||+.|+.++++ . +..++..... ..++++..++....+
T Consensus 192 -------~-avmS~~~a~~~~~-----------------------~--------g~~~g~~~~~-~~~~~~~~~~~~~~f 231 (437)
T KOG1303|consen 192 -------G-AVMSTLYAVILIV-----------------------L--------GIADGVGFCA-PSGGYLDLGTIPTVF 231 (437)
T ss_pred -------H-HHHHHHHHHHHHH-----------------------H--------hhccccccCC-cccCcccCCCCcchh
Confidence 3 3344444333332 1 1112211110 112232222222227
Q ss_pred HHHHHHHHHhccccchhhhhhhhcCCCCCCCCcchhhHHHHHHHHHHHHHHHhhhHhhcccCccccccccCC
Q psy16921 160 LFMGTFLFASLGIGVLIALEDEMKTPSSYRKNPFGIFNMGFTTIIIIYLFVGVIGYYKYGQLVEGSITLNIP 231 (235)
Q Consensus 160 ~~~G~~~faf~g~~~l~~I~~~m~~p~~~~~~~~~v~~~s~~~~~~~Y~~~g~~GY~afG~~v~~~Il~nlp 231 (235)
+++|+++|+|.||+++||||++||+|++|+| ++.+++++++.+|+.+++.||++|||+++|+++.|++
T Consensus 232 ~a~g~iaFaf~gH~v~peIq~tMk~p~~f~~----~~lis~~~~~~~y~~vai~GY~aFG~~~~~~il~s~~ 299 (437)
T KOG1303|consen 232 TALGIIAFAYGGHAVLPEIQHTMKSPPKFKK----ALLISYIIVTFLYFPVAIIGYWAFGDSVPDNILLSLQ 299 (437)
T ss_pred hhhhheeeeecCCeeeeehHhhcCCchhhhh----HHHHHHHHHHHHHHHHHHhhhhhhccccchhhhhccc
Confidence 9999999999999999999999999999776 7999999999999999999999999999999999995
No 4
>PF01490 Aa_trans: Transmembrane amino acid transporter protein; InterPro: IPR013057 This transmembrane region is found in many amino acid transporters including P34579 from SWISSPROT (UNC-47) and P40501 from SWISSPROT (MTR). UNC-47 encodes a vesicular amino butyric acid (GABA) transporter, (VGAT) and is is predicted to have 10 transmembrane domains UNC47_CAEEL []. MTR is an N system amino acid transporter system protein involved in methyltryptophan resistance MTR_NEUCR. Other members of this family include proline transporters and amino acid transporters whose specificity has not yet been identified.
Probab=99.91 E-value=6.6e-27 Score=215.08 Aligned_cols=191 Identities=28% Similarity=0.448 Sum_probs=153.3
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhCCCCcchhHHHHHHHHHHHHHHhcccCcccccccchhhhhh
Q psy16921 1 MDSVNIIIVDFFIFWNHLGICCVYINFIADNFDQACHHFSPDTSLAKIHWELIITVVMIVLNQVKNLHFLSPFSSIESLI 80 (235)
Q Consensus 1 m~~~g~~~v~~~i~i~~~G~ci~YlI~~~d~l~~v~~~~~~~~~~~~~~~~~i~~vv~ipLs~i~~l~~Ls~~S~~~~~~ 80 (235)
.|+++++++++++.++++|.|++|+++.+|+++++.+....+...++..|.++..++++|++++|++++++++|.+
T Consensus 78 ~G~~~~~~~~~~~~~~~~g~~v~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~pls~~~~l~~l~~~s~~---- 153 (409)
T PF01490_consen 78 FGPKGKWFVDICIFIYLFGSCVAYLIIIGDSLSSLIPSFFGDLFISRYVWIIIFALIVLPLSFLKNLKSLRYLSIL---- 153 (409)
T ss_pred ccccccccccchheeccccccceeEEEeeeeeecccccccccccccccccccccccccccccccchhhHHHHHhhh----
Confidence 4899999999999999999999999999999999998875444567778888899999999999999999999999
Q ss_pred hhhccccccccccccccccCCCCCCchhhHHHhhhhhchhhhhhheeeeEEEEEeecCcCCCCCCC-ccccccccccchh
Q psy16921 81 NQRSKAGTKVHSFSNLIKGVGSPSFNSESLIKRFRLLKCNILLTIGLGMVCYYIFRDGLDQPILRP-GDVELFGKLYEVP 159 (235)
Q Consensus 81 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~v~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 159 (235)
++++++..+..+.++.......++.+.+ .+.....++.+++
T Consensus 154 --------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (409)
T PF01490_consen 154 --------------------------------------GLFSIFYFIVIVVIYIISYGPGEPSGVPSPPVWPFISFSGFF 195 (409)
T ss_pred --------------------------------------hhhccceeeeeecceeeeeecccccccccccccccchhhHHH
Confidence 5555544222222222222211111111 1111223456889
Q ss_pred HHHHHHHHHhccccchhhhhhhhcCCCCCCCCcchhhHHHHHHHHHHHHHHHhhhHhhcccCccccccccCCCCC
Q psy16921 160 LFMGTFLFASLGIGVLIALEDEMKTPSSYRKNPFGIFNMGFTTIIIIYLFVGVIGYYKYGQLVEGSITLNIPKDD 234 (235)
Q Consensus 160 ~~~G~~~faf~g~~~l~~I~~~m~~p~~~~~~~~~v~~~s~~~~~~~Y~~~g~~GY~afG~~v~~~Il~nlp~~~ 234 (235)
.++|+++|||.||+++|++++|||+|++++|. +++...++.+++++|+.+|+.||++||++++++++.|+|+++
T Consensus 196 ~~~~i~~faf~~~~~~~~i~~~m~~~~~~~~~-~~~~~~s~~~~~~~y~~~g~~gy~~fg~~~~~~il~n~~~~~ 269 (409)
T PF01490_consen 196 SAFGIIIFAFSCHPNLPPIQSEMKDPSKFKKM-KKVLSISMIICFIIYLLFGIFGYLAFGDSVQGNILLNLPNDD 269 (409)
T ss_pred HhhhhhhhhhhcccccceeeeeccCCcccccc-ceeeeehhhhhhHHhhhhhhcccceeeeeecchhhhcCCCcc
Confidence 99999999999999999999999999998843 568999999999999999999999999999999999999986
No 5
>PLN03074 auxin influx permease; Provisional
Probab=99.83 E-value=2.4e-21 Score=185.91 Aligned_cols=178 Identities=13% Similarity=0.076 Sum_probs=132.6
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhCCCCcchhHHHHHHHHHHHHHHhcccCcccccccchhhhhh
Q psy16921 1 MDSVNIIIVDFFIFWNHLGICCVYINFIADNFDQACHHFSPDTSLAKIHWELIITVVMIVLNQVKNLHFLSPFSSIESLI 80 (235)
Q Consensus 1 m~~~g~~~v~~~i~i~~~G~ci~YlI~~~d~l~~v~~~~~~~~~~~~~~~~~i~~vv~ipLs~i~~l~~Ls~~S~~~~~~ 80 (235)
+|++++.+..++..+.++|.|+.|++..++++.++- ...+++.|+++.+++.+|++++|++|+++++|.+
T Consensus 130 ~G~~~~~~~~~~~~v~l~~~~v~~li~~~~~~~~l~------~~~~~~~~~~i~~~v~~~~~~i~sl~~l~~~S~i---- 199 (473)
T PLN03074 130 LGPYWKNVGLAFNCTFLLFGSVIQLIACASNIYYIN------DNLDKRTWTYIFGACCATTVFIPSFHNYRIWSFL---- 199 (473)
T ss_pred cChhHHHHHHHHHhhhhHHHHHHHHHHHhhhhhhhC------CCcCCCeEEeehHHHHHHHHHccCHHHHHHHHHH----
Confidence 388899999999999999999999999998877652 3457789999999999999999999999999998
Q ss_pred hhhccccccccccccccccCCCCCCchhhHHHhhhhhchhhhhhheeeeEEEEEeecCcCCCCCCCccccccccccchhH
Q psy16921 81 NQRSKAGTKVHSFSNLIKGVGSPSFNSESLIKRFRLLKCNILLTIGLGMVCYYIFRDGLDQPILRPGDVELFGKLYEVPL 160 (235)
Q Consensus 81 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (235)
+..+.+.....+......+....++ ++ +...++...+.
T Consensus 200 --------------------------------------g~~~tl~~av~i~i~~i~~~~~~~~---~~-~~~~~~~~~f~ 237 (473)
T PLN03074 200 --------------------------------------GLLMTTYTAWYMTIAALSHGQVEGV---KH-SGPTKLVLYFT 237 (473)
T ss_pred --------------------------------------HHHHHHHHHHHHHHHHHhhcCCCCC---CC-CCchhHHHHHH
Confidence 3222111100111011111100111 11 11123445566
Q ss_pred HHHHHHHHhccccchhhhhhhhcCCCCCCCCcchhhHHHHHHHHHHHHHHHhhhHhhcccCccc--cccccCCCCC
Q psy16921 161 FMGTFLFASLGIGVLIALEDEMKTPSSYRKNPFGIFNMGFTTIIIIYLFVGVIGYYKYGQLVEG--SITLNIPKDD 234 (235)
Q Consensus 161 ~~G~~~faf~g~~~l~~I~~~m~~p~~~~~~~~~v~~~s~~~~~~~Y~~~g~~GY~afG~~v~~--~Il~nlp~~~ 234 (235)
++++++|+|+||+++||||++||||++|++ ++..++..++.+|+.+|+.||++|||++++ +.+.|+|++.
T Consensus 238 ~~~~i~faf~g~~v~~~I~~~M~~P~~F~~----~~~l~~~~v~~~y~~~~~~gY~~fG~~~~~~s~~l~~lp~~~ 309 (473)
T PLN03074 238 GATNILYTFGGHAVTVEIMHAMWKPQKFKY----IYLAATLYVLTLTLPSAAAVYWAFGDELLTHSNAFSLLPRSG 309 (473)
T ss_pred HHHHHHHHhcccccHHHHHHhccChhcccc----hHHHHHHHHHHHHHHHHHeeeeeechhhhhchhHHhcCCCch
Confidence 777899999999999999999999999997 577899999999999999999999999875 4566788653
No 6
>KOG4303|consensus
Probab=99.73 E-value=6.3e-20 Score=169.27 Aligned_cols=178 Identities=20% Similarity=0.326 Sum_probs=153.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhCCCCcchhHHHHHHHHHHHHHHhcccCcccccccchhhhhhhhh
Q psy16921 4 VNIIIVDFFIFWNHLGICCVYINFIADNFDQACHHFSPDTSLAKIHWELIITVVMIVLNQVKNLHFLSPFSSIESLINQR 83 (235)
Q Consensus 4 ~g~~~v~~~i~i~~~G~ci~YlI~~~d~l~~v~~~~~~~~~~~~~~~~~i~~vv~ipLs~i~~l~~Ls~~S~~~~~~~~~ 83 (235)
.|.+.|.+.+.++.+.+|+.|++..||.+..-++ ..+.+++-|+++....++|++++|++|..|-+|..
T Consensus 199 lGgr~V~~AQliELlmTCIlYvVv~gdLl~~~fP----~~svd~~sWm~i~~a~LLpc~FLk~Lk~VS~lSf~------- 267 (524)
T KOG4303|consen 199 LGGRWVLAAQLIELLMTCILYVVVAGDLLQSCFP----GLSVDKASWMMITSASLLPCSFLKDLKIVSRLSFF------- 267 (524)
T ss_pred cchheeeHHHHHHHHHHHHhhhheechhhhccCC----CCCccccchhhhhhHHHhhhHHHHHHHHHHHHHHH-------
Confidence 4667899999999999999999999999988764 34678899999999999999999999999999888
Q ss_pred ccccccccccccccccCCCCCCchhhHHHhhhhhchhhhhhheeeeEEEEEeecCcCCCCCCCccccccccccchhHHHH
Q psy16921 84 SKAGTKVHSFSNLIKGVGSPSFNSESLIKRFRLLKCNILLTIGLGMVCYYIFRDGLDQPILRPGDVELFGKLYEVPLFMG 163 (235)
Q Consensus 84 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G 163 (235)
|++.-++--.+++.|+....-+.+| +.+++-.+...+|..+|
T Consensus 268 -----------------------------------ct~sH~viN~i~v~YCLs~~~dW~w---skv~Fsidi~~fPisvG 309 (524)
T KOG4303|consen 268 -----------------------------------CTISHLVINLIMVLYCLSFVSDWSW---SKVTFSIDINTFPISVG 309 (524)
T ss_pred -----------------------------------HHHHHHHHHHHHHHHHHHHhhhccc---eeEEEEEEcccCceEEE
Confidence 6665555445555577655544443 56666567788999999
Q ss_pred HHHHHhccccchhhhhhhhcCCCCCCCCcchhhHHHHHHHHHHHHHHHhhhHhhcccCccccccccCCCCC
Q psy16921 164 TFLFASLGIGVLIALEDEMKTPSSYRKNPFGIFNMGFTTIIIIYLFVGVIGYYKYGQLVEGSITLNIPKDD 234 (235)
Q Consensus 164 ~~~faf~g~~~l~~I~~~m~~p~~~~~~~~~v~~~s~~~~~~~Y~~~g~~GY~afG~~v~~~Il~nlp~~~ 234 (235)
+++|+|..|.-+|+++..|++|++|+- .+.++-+..+++...+|.+||++|||++++.|+.|+|...
T Consensus 310 ~iVFsYTSqIFLP~LEGNM~~ps~Fn~----Ml~WsHIAAaVfK~~Fg~~~fLTf~~~TqevItnnLp~qs 376 (524)
T KOG4303|consen 310 MIVFSYTSQIFLPNLEGNMKNPSQFNV----MLKWSHIAAAVFKVVFGMLGFLTFGELTQEVITNNLPNQS 376 (524)
T ss_pred EEEEeeeceeeccccccccCChhHhee----eeehHHHHHHHHHHHHHHheeeeechhhHHHHhcCCCccc
Confidence 999999999999999999999999997 6899999999999999999999999999999999999853
No 7
>KOG1305|consensus
Probab=99.69 E-value=6.2e-19 Score=166.85 Aligned_cols=188 Identities=18% Similarity=0.215 Sum_probs=135.8
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhCCCCc----chhHH--HHHHHHHHHHHHhcccCcccccccc
Q psy16921 1 MDSVNIIIVDFFIFWNHLGICCVYINFIADNFDQACHHFSPDTS----LAKIH--WELIITVVMIVLNQVKNLHFLSPFS 74 (235)
Q Consensus 1 m~~~g~~~v~~~i~i~~~G~ci~YlI~~~d~l~~v~~~~~~~~~----~~~~~--~~~i~~vv~ipLs~i~~l~~Ls~~S 74 (235)
+|+.|+..+.+.+....+| |++|++.++|.++.+.+....++. +.++. |++..+.++.||+..|++.+|++.|
T Consensus 77 ~g~~g~~~~~v~~~~~~~g-~i~yliiigd~~p~~~~~~~~~~~~~~~~~~~~~~ill~~~~~i~pLsl~k~l~~Lk~tS 155 (411)
T KOG1305|consen 77 FGKLGKVDAAVAVKCFGVG-MVSYLIIIGDLLPGFIRSLFLDEEGGSHYLDRNFLILLVLLFIILPLSLLKNLDSLKYTS 155 (411)
T ss_pred cCCCceeeehhhHHhhhcc-ceEEEEEEccccchhhhhcccccccccccccceeEeehHHHHHHHHHHHHHhhhhHHHHH
Confidence 3666755555555555555 699999999999988876643222 22232 4677889999999999999999999
Q ss_pred hhhhhhhhhccccccccccccccccCCCCCCchhhHHHhhhhhchhhhhhheeeeEEEEEeecCcCCCCCCCcccccccc
Q psy16921 75 SIESLINQRSKAGTKVHSFSNLIKGVGSPSFNSESLIKRFRLLKCNILLTIGLGMVCYYIFRDGLDQPILRPGDVELFGK 154 (235)
Q Consensus 75 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 154 (235)
.+ +.+..+....++.++.+......+ ....+.+.-..
T Consensus 156 ~~------------------------------------------s~~~~~~fv~~vv~~~~~~~~~~~-~~~~~~~~~~~ 192 (411)
T KOG1305|consen 156 AL------------------------------------------SLASVVYFVVLVVYKYFQGPCALG-RLSYLVPNLSS 192 (411)
T ss_pred HH------------------------------------------HHHHHHHHHHHHHHHHHhcccccC-CcccccCCcch
Confidence 99 322222222233322222110000 00111211112
Q ss_pred ccchhHHHHHHHHHhccccchhhhhhhhcCCCCCCCCcchhhHHHHHHHHHHHHHHHhhhHhhcccCccccccccCCCCC
Q psy16921 155 LYEVPLFMGTFLFASLGIGVLIALEDEMKTPSSYRKNPFGIFNMGFTTIIIIYLFVGVIGYYKYGQLVEGSITLNIPKDD 234 (235)
Q Consensus 155 ~~~~~~~~G~~~faf~g~~~l~~I~~~m~~p~~~~~~~~~v~~~s~~~~~~~Y~~~g~~GY~afG~~v~~~Il~nlp~~~ 234 (235)
+++++..+++++|||.||.+..+|++|||||++.++ +++...+...+..+|..+|+.||+.|||++++|++.+.|+++
T Consensus 193 ~~~~~~~~pi~~faf~Ch~n~~~i~~El~~~s~~~i--~~v~~~~~~~~~~iy~~~g~~GYL~Fg~~v~~n~l~~~~~~~ 270 (411)
T KOG1305|consen 193 FSSLFYALPIFVFAFTCHSNVFPIYNELKDRSVKKI--QRVSNIAIILATLIYLLTGLFGYLTFGDLVKGNLLHNYDSIL 270 (411)
T ss_pred hhhhhhhhhhhheeeeccccceeeeeeeeCchHHHH--HHHHHHHHHHHHHHHHHHHHhhhheecccchHHHHhcCCccc
Confidence 357889999999999999999999999999997766 678999999999999999999999999999999999999875
No 8
>COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism]
Probab=99.59 E-value=1.3e-15 Score=144.13 Aligned_cols=187 Identities=18% Similarity=0.165 Sum_probs=142.5
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhCCCCcchhHHHHHHHHHHHHHHhcccCcccccccchhhhhh
Q psy16921 1 MDSVNIIIVDFFIFWNHLGICCVYINFIADNFDQACHHFSPDTSLAKIHWELIITVVMIVLNQVKNLHFLSPFSSIESLI 80 (235)
Q Consensus 1 m~~~g~~~v~~~i~i~~~G~ci~YlI~~~d~l~~v~~~~~~~~~~~~~~~~~i~~vv~ipLs~i~~l~~Ls~~S~~~~~~ 80 (235)
.|++|+++.++.+.+.++|.+.+|.+..+|.+++.+++.....+.+++.+.++...++.++++.++...++..|.+
T Consensus 82 ~G~~~~~li~~s~~~~~~~~~~aY~~~~g~~l~~~~~~~~~~~~~~r~~~~lif~~~~~~l~~~~~~~~lk~ts~l---- 157 (415)
T COG0814 82 LGKKGGILIGLSYFFALYGLLVAYIVGIGNLLASFLGNQFGLNPLPRKLGSLIFALVLAFLSWLGTLAVLKITSLL---- 157 (415)
T ss_pred hCcchHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHhhcccCCcchHHHHHHHHHHHHHHHHhchhHHHHHHHHH----
Confidence 4899999999999999999999999999999999999865443356677788888888899999999999998888
Q ss_pred hhhccccccccccccccccCCCCCCchhhHHHhhhhhchhhhhhheeeeEEEEEeecCcCCCC-CCCccccccccccchh
Q psy16921 81 NQRSKAGTKVHSFSNLIKGVGSPSFNSESLIKRFRLLKCNILLTIGLGMVCYYIFRDGLDQPI-LRPGDVELFGKLYEVP 159 (235)
Q Consensus 81 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~v~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 159 (235)
....+.+......+.. .+...+.. ..+.+. ...+..+.
T Consensus 158 --------------------------------------~~~~v~~~~~l~~~~~-~~~~~~~l~~~~~~~--~~~~~~~~ 196 (415)
T COG0814 158 --------------------------------------VFGKVIYLVLLVVYLI-PHWNPANLFALPSAS--QSFWKYLL 196 (415)
T ss_pred --------------------------------------HHHHHHHHHHHHHHHh-cccCHHHHhcccccc--hhhHHHHH
Confidence 2222211111111111 11100000 000110 12456778
Q ss_pred HHHHHHHHHhccccchhhhhhhhcCCCCCCCCcchhhHHHHHHHHHHHHHHHhhhHhhcccCccccccccCCCCC
Q psy16921 160 LFMGTFLFASLGIGVLIALEDEMKTPSSYRKNPFGIFNMGFTTIIIIYLFVGVIGYYKYGQLVEGSITLNIPKDD 234 (235)
Q Consensus 160 ~~~G~~~faf~g~~~l~~I~~~m~~p~~~~~~~~~v~~~s~~~~~~~Y~~~g~~GY~afG~~v~~~Il~nlp~~~ 234 (235)
.++|.+.|||+||+++++++++||++++.+. +++...+..+..++|..+++.+|..+|+++.++++.+.++++
T Consensus 197 ~~ipv~vfsF~~h~~i~si~~~~~~~~~~~~--~k~~~~~~~~~~vlyi~~~~~~~~~~~~~~~~~il~~~~~~~ 269 (415)
T COG0814 197 LAIPVFVFSFGFHGNIPSLVNYMRKNSKKAV--RKAILIGSLIALVLYILVGFFVFGCFGSLVFGNILAAKEQNI 269 (415)
T ss_pred HHhhHHHhhhhCCccchHHHHHhccchhHHH--HHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHccCchH
Confidence 9999999999999999999999998876311 348999999999999999999999999999999999998765
No 9
>TIGR00837 araaP aromatic amino acid transport protein. aromatic amino acid transporters and includes the tyrosine permease, TyrP, of E. coli, and the tryptophan transporters TnaB and Mtr of E. coli.
Probab=98.18 E-value=1.5e-06 Score=80.39 Aligned_cols=169 Identities=8% Similarity=-0.037 Sum_probs=101.2
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhCCCCcchhHHHHHHHHHHHHHHhcccCcccccccchhhhhh
Q psy16921 1 MDSVNIIIVDFFIFWNHLGICCVYINFIADNFDQACHHFSPDTSLAKIHWELIITVVMIVLNQVKNLHFLSPFSSIESLI 80 (235)
Q Consensus 1 m~~~g~~~v~~~i~i~~~G~ci~YlI~~~d~l~~v~~~~~~~~~~~~~~~~~i~~vv~ipLs~i~~l~~Ls~~S~~~~~~ 80 (235)
+|+++++++.......++..+.+|.+..++.+..+++..... ..+.+...++...++.+++.. ..|....++.+
T Consensus 69 ~G~~~g~~~~~~~~~~~~~~~~ay~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~v~~~l~~~-G~~~~~~v~~i---- 142 (381)
T TIGR00837 69 LGKTGNIIAGLSLLFVLYILTYAYISGGGSILSRLIGEYFGF-PWSARAIVLIFTVLFGSFVWL-STSAVDRITRV---- 142 (381)
T ss_pred hCHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHhcCC-CccHHHHHHHHHHHHHHHHHh-chhHHHHHHHH----
Confidence 588999999999999999999999999999999988764321 223333333344444454443 44555555544
Q ss_pred hhhccccccccccccccccCCCCCCchhhHHHhhhhhchhhhhhheeeeEEEEEeecCcCCCCCCCccccccccccchhH
Q psy16921 81 NQRSKAGTKVHSFSNLIKGVGSPSFNSESLIKRFRLLKCNILLTIGLGMVCYYIFRDGLDQPILRPGDVELFGKLYEVPL 160 (235)
Q Consensus 81 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (235)
. +. ..+..+..+.... ..+...++. .+.... ...+.++..
T Consensus 143 ------~---------------------------~~--~~l~~l~~~ii~~---~~~~~~~~~-~~~~~~-~~~~~~~~~ 182 (381)
T TIGR00837 143 ------L---------------------------IF--GKIIAFALVFSGL---LPHVKGDLL-LDVALD-TSYWPYILS 182 (381)
T ss_pred ------H---------------------------HH--HHHHHHHHHHHHH---HhhccHHHH-hcCccc-cccHHHHHH
Confidence 0 00 1111111011111 111100000 010000 012445667
Q ss_pred HHHHHHHHhccccchhhhhhhhcCCC-CCCCCcchhhHHHHHHHHHHHHHHHhhhHhhcc
Q psy16921 161 FMGTFLFASLGIGVLIALEDEMKTPS-SYRKNPFGIFNMGFTTIIIIYLFVGVIGYYKYG 219 (235)
Q Consensus 161 ~~G~~~faf~g~~~l~~I~~~m~~p~-~~~~~~~~v~~~s~~~~~~~Y~~~g~~GY~afG 219 (235)
+++...++|.+|++++++.+++++|+ +. +|+...+..+++++|+.+........+
T Consensus 183 a~~~~~~~fg~~~~i~~~~~~~~~~~k~i----~raii~g~~i~~~lY~l~~~~~~g~~~ 238 (381)
T TIGR00837 183 ALPVCLTSFGFHGNVPSLYKYYDGNVKKV----KKSILIGSAIALVLYILWQLATMGNLP 238 (381)
T ss_pred HHHHHHHHHHcccccHHHHHHhccCHHHH----HHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 88888899988889999999998553 33 347889999999999988665554443
No 10
>PF03222 Trp_Tyr_perm: Tryptophan/tyrosine permease family; InterPro: IPR018227 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [, , ]. Aromatic amino acids are concentrated in the cytoplasm of Escherichia coli by 4 distinct transport systems: a general aromatic amino acid permease, and a specific permease for each of the 3 types (Phe, Tyr and Trp) []. It has been shown [] that some permeases in E. coli and related bacteria are evolutionary related. These permeases are proteins of about 400 to 420 amino acids and are located in the cytoplasmic membrane and, like bacterial sugar/cation transporters, are thought to contain 12 transmembrane (TM) regions [] - hydropathy analysis, however, is inconclusive, suggesting the possibility of 10 to 12 membrane-spanning domains []. The best conserved domain is a stretch of 20 residues which seems to be located in a cytoplasmic loop between the first and second transmembrane region.
Probab=97.37 E-value=0.00021 Score=67.59 Aligned_cols=160 Identities=11% Similarity=0.094 Sum_probs=92.5
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhCCCCcchhHHHHHHHHHHHHHHhcccCcccccccchhhhhh
Q psy16921 1 MDSVNIIIVDFFIFWNHLGICCVYINFIADNFDQACHHFSPDTSLAKIHWELIITVVMIVLNQVKNLHFLSPFSSIESLI 80 (235)
Q Consensus 1 m~~~g~~~v~~~i~i~~~G~ci~YlI~~~d~l~~v~~~~~~~~~~~~~~~~~i~~vv~ipLs~i~~l~~Ls~~S~~~~~~ 80 (235)
.|+.|+++..+...+..++.+++|..-.++.+++.++.... .+.+++.-.++..++...+.... -|.....+..
T Consensus 75 lG~~g~~~~~~~~~~~~y~ll~AYisg~g~~~~~~l~~~~~-~~~~~~~~~~~f~~i~~~iv~~g-~~~v~~~n~~---- 148 (394)
T PF03222_consen 75 LGKKGGIVIGISYLFLLYALLVAYISGGGSILSSLLGNQLG-TDLSPWLSSLLFTIIFGGIVYFG-TKAVDRINRV---- 148 (394)
T ss_pred hChHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHHHHHHhh-HHHHHHHHHH----
Confidence 48999999999999999999999999999999999987642 23333332222222222222221 1111111111
Q ss_pred hhhccccccccccccccccCCCCCCchhhHHHhhhhhchhhhhhheeeeEEEEEeecCcCCCCCCCccccccccccchhH
Q psy16921 81 NQRSKAGTKVHSFSNLIKGVGSPSFNSESLIKRFRLLKCNILLTIGLGMVCYYIFRDGLDQPILRPGDVELFGKLYEVPL 160 (235)
Q Consensus 81 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (235)
.....+..+.....+.+.+. +.+... ...+...++...+.
T Consensus 149 --------------------------------------lv~~~i~~~~~l~~~~~p~~-~~~~L~-~~~~~~~~~~~~~~ 188 (394)
T PF03222_consen 149 --------------------------------------LVFGMIISFIILVVYLIPHW-NPSNLL-DAPPSPSDWSYILP 188 (394)
T ss_pred --------------------------------------HHHHHHHHHHHHHHHHhhhc-CHHHhh-ccccccccHHHHHH
Confidence 00000000111111111221 000000 10111234667789
Q ss_pred HHHHHHHHhccccchhhhhhhhc-CCCCCCCCcchhhHHHHHHHHHHHHHH
Q psy16921 161 FMGTFLFASLGIGVLIALEDEMK-TPSSYRKNPFGIFNMGFTTIIIIYLFV 210 (235)
Q Consensus 161 ~~G~~~faf~g~~~l~~I~~~m~-~p~~~~~~~~~v~~~s~~~~~~~Y~~~ 210 (235)
.++..++||..|+++|++.+.++ |++|.|| ++..+..+..++|+..
T Consensus 189 ~lPv~~~Sf~f~~ivPsl~~~~~~d~~k~~~----ai~~Gs~i~lv~yl~w 235 (394)
T PF03222_consen 189 ALPVLVFSFGFHNIVPSLVKYLGGDPKKIRK----AIIIGSLIPLVMYLLW 235 (394)
T ss_pred HHHHHHHHHHHHhhhHHHHHHhCccHHHHHH----HHHHHHHHHHHHHHHH
Confidence 99999999999999999999998 4455444 7888888888888765
No 11
>PRK10483 tryptophan permease; Provisional
Probab=97.02 E-value=0.00064 Score=65.10 Aligned_cols=160 Identities=9% Similarity=0.036 Sum_probs=91.4
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhCCCCcchhHHHHHHHHHHHHHHhcccCcccccccchhhhhh
Q psy16921 1 MDSVNIIIVDFFIFWNHLGICCVYINFIADNFDQACHHFSPDTSLAKIHWELIITVVMIVLNQVKNLHFLSPFSSIESLI 80 (235)
Q Consensus 1 m~~~g~~~v~~~i~i~~~G~ci~YlI~~~d~l~~v~~~~~~~~~~~~~~~~~i~~vv~ipLs~i~~l~~Ls~~S~~~~~~ 80 (235)
.|+.|+++..+......++.+++|+-=.||.+.+.+++. +.+.+.+.=-++..++.-.+.+.. .|....++-+ |+
T Consensus 83 LG~~g~~i~~~s~lfl~Y~Ll~AYisg~g~il~~~l~~~--~~~i~~~~~~llF~~~~~~iv~~g-t~~vd~~n~~--l~ 157 (414)
T PRK10483 83 LGKGWNVVNGISIAFVLYILTYAYISASGSILHHTFAEM--SLNVPARAAGFGFALLVAFVVWLS-TKAVSRMTAI--VL 157 (414)
T ss_pred cChHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHhc--CCCCcHHHHHHHHHHHHHHHHHhh-hhHHHHHHHH--HH
Confidence 488999999999999999999999999999999999763 122222222222333333333332 1333332222 00
Q ss_pred hhhccccccccccccccccCCCCCCchhhHHHhhhhhchhhhhhheeeeEEEEEeecCcCCCCCCCccccccccccchhH
Q psy16921 81 NQRSKAGTKVHSFSNLIKGVGSPSFNSESLIKRFRLLKCNILLTIGLGMVCYYIFRDGLDQPILRPGDVELFGKLYEVPL 160 (235)
Q Consensus 81 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (235)
+ |+ + ...+.+++... -........+.+ .+. ...+..++.
T Consensus 158 ------~-----------~~----------i-------~~f~~~~~~l~-~~i~~~~L~~~~----~~~--~~~~~~~~~ 196 (414)
T PRK10483 158 ------G-----------AK----------V-------ITFFLTFGSLL-GHVQPATLFNVA----ESN--ASYAPYLLM 196 (414)
T ss_pred ------H-----------HH----------H-------HHHHHHHHHHH-hhcCHHHHhccc----ccc--chhHHHHHH
Confidence 0 00 0 11111111100 000000000000 010 011234668
Q ss_pred HHHHHHHHhccccchhhhhhhhcC-CCCCCCCcchhhHHHHHHHHHHHHHH
Q psy16921 161 FMGTFLFASLGIGVLIALEDEMKT-PSSYRKNPFGIFNMGFTTIIIIYLFV 210 (235)
Q Consensus 161 ~~G~~~faf~g~~~l~~I~~~m~~-p~~~~~~~~~v~~~s~~~~~~~Y~~~ 210 (235)
++++..+||..|+++|++++.+++ ++|-| +++..+..+..++|+..
T Consensus 197 alPvl~~SFgfh~iIPsl~~y~~~d~~kir----~~I~iGs~Iplv~yl~W 243 (414)
T PRK10483 197 TLPFCLASFGYHGNVPSLMKYYGKDPKTIV----KCLVYGTLMALALYTIW 243 (414)
T ss_pred HHHHHHhhccCCCcchHHHHHhCcCHHHHH----HHHHHHHHHHHHHHHHH
Confidence 899999999999999999999975 44444 48889999999999873
No 12
>PRK15132 tyrosine transporter TyrP; Provisional
Probab=96.61 E-value=0.0033 Score=59.91 Aligned_cols=163 Identities=11% Similarity=0.097 Sum_probs=92.4
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhCCCCcchhHHHHHHHHHHHHHHhcccCcccccccchhhhhh
Q psy16921 1 MDSVNIIIVDFFIFWNHLGICCVYINFIADNFDQACHHFSPDTSLAKIHWELIITVVMIVLNQVKNLHFLSPFSSIESLI 80 (235)
Q Consensus 1 m~~~g~~~v~~~i~i~~~G~ci~YlI~~~d~l~~v~~~~~~~~~~~~~~~~~i~~vv~ipLs~i~~l~~Ls~~S~~~~~~ 80 (235)
.|+.|+++..+......+..+.+|..-.|+.+.+..++.... +.+.....++..++.....+.. -|....+.-. +
T Consensus 75 LG~~g~~i~~~~y~fl~y~ll~AYisg~g~il~~~l~~~~~~-~i~~~~~~l~F~~~~~~iv~~g-~~~v~~~n~~---L 149 (403)
T PRK15132 75 LGRYGQWLTGFSMMFLMYALTAAYISGAGELLASSISDWTGI-SMSPTAGVLLFTLVAGGVVCVG-TSSVDLFNRF---L 149 (403)
T ss_pred hChHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHhccC-CCChHHHHHHHHHHHHHHHhcc-HHHHHHHHHH---H
Confidence 489999999999999999999999999999999988764321 2233222222222222222221 1222111111 0
Q ss_pred hhhccccccccccccccccCCCCCCchhhHHHhhhhhchhhhhhheeeeEEEEEeecCcCCCCCCCccccccccccchhH
Q psy16921 81 NQRSKAGTKVHSFSNLIKGVGSPSFNSESLIKRFRLLKCNILLTIGLGMVCYYIFRDGLDQPILRPGDVELFGKLYEVPL 160 (235)
Q Consensus 81 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (235)
.. ..+..++ ....+..++...+. ..+.+. +...++.
T Consensus 150 ------------------------------~~------~~ii~~~---~~~~~l~p~~~~~~---L~~~~~--~~~~~~~ 185 (403)
T PRK15132 150 ------------------------------FS------AKIIFLV---VMLALMMPHIHKVN---LLTLPL--QQGLALS 185 (403)
T ss_pred ------------------------------HH------HHHHHHH---HHHHHHHHhcCHHH---HhcCCc--cccHHHH
Confidence 00 1011100 01111122210000 001010 1113678
Q ss_pred HHHHHHHHhccccchhhhhhhhcCC-CCCCCCcchhhHHHHHHHHHHHHHHHhhhHh
Q psy16921 161 FMGTFLFASLGIGVLIALEDEMKTP-SSYRKNPFGIFNMGFTTIIIIYLFVGVIGYY 216 (235)
Q Consensus 161 ~~G~~~faf~g~~~l~~I~~~m~~p-~~~~~~~~~v~~~s~~~~~~~Y~~~g~~GY~ 216 (235)
.+++..+||..|+++|++.+.+++. +|-| |++..+..+..++|+..=.....
T Consensus 186 ~iPvl~~SFgfh~iIpsl~~y~~~~~~~~~----k~i~~Gs~i~li~yl~W~~~~lg 238 (403)
T PRK15132 186 AIPVIFTSFGFHGSVPSIVSYMGGNIRKLR----WVFIIGSAIPLVAYIFWQLATLG 238 (403)
T ss_pred HHHHHHHHhhCCcccHHHHHHhCcCHHHHH----HHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999754 4444 47888999999988866554443
No 13
>PRK09664 tryptophan permease TnaB; Provisional
Probab=96.52 E-value=0.0052 Score=58.91 Aligned_cols=162 Identities=12% Similarity=0.022 Sum_probs=88.2
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhCCCCcchhHHHHHHHHHHHHHHhcccCcccccccchhhhhh
Q psy16921 1 MDSVNIIIVDFFIFWNHLGICCVYINFIADNFDQACHHFSPDTSLAKIHWELIITVVMIVLNQVKNLHFLSPFSSIESLI 80 (235)
Q Consensus 1 m~~~g~~~v~~~i~i~~~G~ci~YlI~~~d~l~~v~~~~~~~~~~~~~~~~~i~~vv~ipLs~i~~l~~Ls~~S~~~~~~ 80 (235)
.|+.|+++..+...+..++.+++|+--.|+.+++.+++.. +.+.+.+.--++..++.-++.+... |....++-+ |+
T Consensus 81 LG~~g~~i~~~~~~fl~Y~Ll~AYisggG~il~~~l~~~~-~~~i~~~~~~llF~~~~~~~v~~gt-~~vd~~nr~--l~ 156 (415)
T PRK09664 81 IGNTWNIISGITVAFVLYILTYAYISANGAIISETISMNL-GYHANPRIVGICTAIFVASVLWISS-LAASRITSL--FL 156 (415)
T ss_pred cChHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHhhhc-cCCCcHHHHHHHHHHHHHHHHHhch-hHHHHHHHH--HH
Confidence 4899999999999999999999999999999999997631 2222333222333333333333322 333333322 00
Q ss_pred hhhccccccccccccccccCCCCCCchhhHHHhhhhhchhhhhhheeeeEEEEEeecCcCCCCCCCccccccccccchhH
Q psy16921 81 NQRSKAGTKVHSFSNLIKGVGSPSFNSESLIKRFRLLKCNILLTIGLGMVCYYIFRDGLDQPILRPGDVELFGKLYEVPL 160 (235)
Q Consensus 81 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (235)
+.+ ....+.+++.. .-........+.++ ..+.+ ..+..+..
T Consensus 157 ------~~~----------------------------ii~f~~~~~~l-~~~i~~~~L~~~~~--~~~~~--~~~~~i~~ 197 (415)
T PRK09664 157 ------GLK----------------------------IISFVIVFGSF-FFQVDYSILRDATS--TTAGT--SYFPYIFM 197 (415)
T ss_pred ------HHH----------------------------HHHHHHHHHHH-hhcccHHHHhcCcc--ccccc--hHHHHHHH
Confidence 000 01111111100 00001111111110 00000 00223567
Q ss_pred HHHHHHHHhccccchhhhhhhhcCC-CCCCCCcchhhHHHHHHHHHHHHH
Q psy16921 161 FMGTFLFASLGIGVLIALEDEMKTP-SSYRKNPFGIFNMGFTTIIIIYLF 209 (235)
Q Consensus 161 ~~G~~~faf~g~~~l~~I~~~m~~p-~~~~~~~~~v~~~s~~~~~~~Y~~ 209 (235)
++++..+||..|+++|++.+.+++. ++.|| .+..+..+..++|..
T Consensus 198 alPVl~~SFgfh~iIPsl~~y~~~d~~~~~k----aIl~Gs~IpLviY~~ 243 (415)
T PRK09664 198 ALPVCLASFGFHGNIPSLIICYGKRKDKLIK----SVVFGSLLALVIYLF 243 (415)
T ss_pred HHHHHHHhhhCCCcchHHHHHhCccHHHHHH----HHHHHHHHHHHHHHH
Confidence 8999999999999999999998744 44444 566777777777743
No 14
>TIGR00814 stp serine transporter. The HAAAP family includes well characterized aromatic amino acid:H+ symport permeases and hydroxy amino acid permeases. This subfamily is specific for hydroxy amino acid transporters and includes the serine permease, SdaC, of E. coli, and the threonine permease, TdcC, of E. coli.
Probab=96.14 E-value=0.0077 Score=57.21 Aligned_cols=174 Identities=10% Similarity=0.032 Sum_probs=95.7
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhCCCCcchhHHHHHHHHHHHHHHhcccCcccccccchhhhhh
Q psy16921 1 MDSVNIIIVDFFIFWNHLGICCVYINFIADNFDQACHHFSPDTSLAKIHWELIITVVMIVLNQVKNLHFLSPFSSIESLI 80 (235)
Q Consensus 1 m~~~g~~~v~~~i~i~~~G~ci~YlI~~~d~l~~v~~~~~~~~~~~~~~~~~i~~vv~ipLs~i~~l~~Ls~~S~~~~~~ 80 (235)
.|+++..+..+...+..+-.+.+|..-.++.+.+.+.+.... +...+....+..+..+........+.+..++.+
T Consensus 76 fGk~~G~ii~~lY~~~~~~i~~aY~~~~~~~~~~fl~~~~~~-~~p~~~i~~lilv~il~~iv~~G~~~i~r~~~i---- 150 (397)
T TIGR00814 76 FGKNWGILITLLYFFAIYPILLIYSVAITNDSASFLVNQLGT-APPLRGLLSLALILILVAIMSFGEKLLFKIMGP---- 150 (397)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CCcHHHHHHHHHHHHHHHHHHhcHHHHHHHHHH----
Confidence 388899999999999999999999999999998888764311 112232222222222122222233433333322
Q ss_pred hhhccccccccccccccccCCCCCCchhhHHHhhhhhchhhhhhheeeeEEEEEeecCcCCCCCCCccccc-cccccchh
Q psy16921 81 NQRSKAGTKVHSFSNLIKGVGSPSFNSESLIKRFRLLKCNILLTIGLGMVCYYIFRDGLDQPILRPGDVEL-FGKLYEVP 159 (235)
Q Consensus 81 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 159 (235)
-....++.+.....+..++...+. ..+.+. .+.+.++.
T Consensus 151 --------------------------------------l~~~~ii~l~~l~~~lip~~~~~~---L~~~p~~~~~~~~i~ 189 (397)
T TIGR00814 151 --------------------------------------LVFPLVLILVLLSLYLIPHWNGAN---LTTFPSFNGFLKTLW 189 (397)
T ss_pred --------------------------------------HHHHHHHHHHHHHHHHHHHcCHHH---HhcCCcccchHHHHH
Confidence 000000101111111112210000 000110 01234577
Q ss_pred HHHHHHHHHhccccchhhhhhhh----cCCC-CCCCCcchhhHHHHHHHHHHHHHHHhhhHhhcccC
Q psy16921 160 LFMGTFLFASLGIGVLIALEDEM----KTPS-SYRKNPFGIFNMGFTTIIIIYLFVGVIGYYKYGQL 221 (235)
Q Consensus 160 ~~~G~~~faf~g~~~l~~I~~~m----~~p~-~~~~~~~~v~~~s~~~~~~~Y~~~g~~GY~afG~~ 221 (235)
.+++...+||.+|+++++...+. +||+ ..+|. +|+...+..+..++|+..-+.+-...+.+
T Consensus 190 ~alpv~~~SF~~~~iIssl~~~~~~~~~~~~~~~~k~-~k~i~~~~~i~~~~y~~~~~s~~~~l~~~ 255 (397)
T TIGR00814 190 LTIPVMVFSFNHSPIISSFAISYREEYGDKEFAERKC-LRIMKGASLILVATVMFFVFSCVLSLSPA 255 (397)
T ss_pred HHHHHHHHHHHccccchHHHHHHHHHcCCcchHHHHH-HHHHHHHHHHHHHHHHHHHHHHhccCCHH
Confidence 89999999999999999997333 3232 11221 45788899999888888777666666544
No 15
>PRK13629 threonine/serine transporter TdcC; Provisional
Probab=95.75 E-value=0.039 Score=53.47 Aligned_cols=179 Identities=13% Similarity=0.121 Sum_probs=95.7
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhCCCCcchhHHHHHHHHHHHHHHhcccCcccccccchhhhhh
Q psy16921 1 MDSVNIIIVDFFIFWNHLGICCVYINFIADNFDQACHHFSPDTSLAKIHWELIITVVMIVLNQVKNLHFLSPFSSIESLI 80 (235)
Q Consensus 1 m~~~g~~~v~~~i~i~~~G~ci~YlI~~~d~l~~v~~~~~~~~~~~~~~~~~i~~vv~ipLs~i~~l~~Ls~~S~~~~~~ 80 (235)
.|+.|+.+..+..++..+-.+.+|...+.+.++..+.+.....+.++...-++...++.......+ |.+-.++..
T Consensus 92 lG~~g~~i~~ilYff~ly~ll~aY~~~itn~l~sfl~~ql~~~~~~r~l~slifv~~l~~iv~~G~-~~v~kv~~~---- 166 (443)
T PRK13629 92 FGKTGGVVITFLYFFAICPLLWIYGVTITNTFMTFWENQLGFAPLNRGFVALFLLLLMAFVIWFGK-DLMVKVMSY---- 166 (443)
T ss_pred cChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcCCccHHHHHHHHHHHHHHHHHhhH-HHHHHHHHH----
Confidence 488999999999999999999999999999998876655322233322222233333323333221 222222221
Q ss_pred hhhccccccccccccccccCCCCCCchhhHHHhhhhhchhhhhhheeeeEEEEEeecCcCCCCCC-Cccccccccccchh
Q psy16921 81 NQRSKAGTKVHSFSNLIKGVGSPSFNSESLIKRFRLLKCNILLTIGLGMVCYYIFRDGLDQPILR-PGDVELFGKLYEVP 159 (235)
Q Consensus 81 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~v~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 159 (235)
+.... ...+.+.+...+-........+.++.. ++..+. +....+.
T Consensus 167 -----------------------------Lv~~~----i~~l~~l~~~LiP~w~~~~L~~~~~~~~~~~~~~-~~~~~l~ 212 (443)
T PRK13629 167 -----------------------------LVWPF----IASLVLISLSLIPYWNSAVIDQVDLGSLSLTGHD-GILVTVW 212 (443)
T ss_pred -----------------------------HHHHH----HHHHHHHHHHHHHHcCHHHHhcCccccccccccc-cHHHHHH
Confidence 00000 111111111111111111111111000 000000 0012367
Q ss_pred HHHHHHHHHhccccchhhhhhhhcCC-C-----C--CCCCcchhhHHHHHHHHHHHHHHHhhhHhhcc
Q psy16921 160 LFMGTFLFASLGIGVLIALEDEMKTP-S-----S--YRKNPFGIFNMGFTTIIIIYLFVGVIGYYKYG 219 (235)
Q Consensus 160 ~~~G~~~faf~g~~~l~~I~~~m~~p-~-----~--~~~~~~~v~~~s~~~~~~~Y~~~g~~GY~afG 219 (235)
.+++..++||.-|+++++..+.+|+. + + .+|. ++++..+..+..++|+..-+.+-..-+
T Consensus 213 ~~iPv~v~SF~f~~iIssl~~y~r~~y~~~~~~~~a~~k~-~rii~~gs~i~lv~y~fwv~S~~gsLs 279 (443)
T PRK13629 213 LGISIMVFSFNFSPIVSSFVVSKREEYEKDFGRDFTERKC-SQIISRASMLMVAVVMFFAFSCLFTLS 279 (443)
T ss_pred HHHHHHHHHHhccccchHHHHHHHHHhccccccchHHHHH-HHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 88899999999999999998885332 1 1 2222 568889999999999887766655444
No 16
>TIGR00909 2A0306 amino acid transporter.
Probab=95.70 E-value=0.079 Score=49.59 Aligned_cols=58 Identities=16% Similarity=0.268 Sum_probs=45.9
Q ss_pred ccchhHHHHHHHHHhccccchhhhhhhhcCCCCCCCCcchhhHHHHHHHHHHHHHHHhhhH
Q psy16921 155 LYEVPLFMGTFLFASLGIGVLIALEDEMKTPSSYRKNPFGIFNMGFTTIIIIYLFVGVIGY 215 (235)
Q Consensus 155 ~~~~~~~~G~~~faf~g~~~l~~I~~~m~~p~~~~~~~~~v~~~s~~~~~~~Y~~~g~~GY 215 (235)
...+..++....|+|.|........+|+|||+|-- +|.+..+...+.++|+.......
T Consensus 194 ~~~~~~~~~~~~~af~G~e~~~~~~~E~~~p~r~i---p~ai~~~~~~~~v~Yil~~~~~~ 251 (429)
T TIGR00909 194 FGGVGAATALVFFAFIGFEAISTAAEEVKNPERDI---PKAIILSLIVVTLLYVLVAAVIL 251 (429)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHhhHHhccCccccc---cHHHHHHHHHHHHHHHHHHHHHh
Confidence 34566777788999999999999999999996432 23788999999999998865443
No 17
>TIGR00906 2A0303 cationic amino acid transport permease.
Probab=95.08 E-value=0.18 Score=49.82 Aligned_cols=54 Identities=17% Similarity=0.221 Sum_probs=45.1
Q ss_pred cchhHHHHHHHHHhccccchhhhhhhhcCCCC-CCCCcchhhHHHHHHHHHHHHHHHhh
Q psy16921 156 YEVPLFMGTFLFASLGIGVLIALEDEMKTPSS-YRKNPFGIFNMGFTTIIIIYLFVGVI 213 (235)
Q Consensus 156 ~~~~~~~G~~~faf~g~~~l~~I~~~m~~p~~-~~~~~~~v~~~s~~~~~~~Y~~~g~~ 213 (235)
.++..+.....|+|.|-..+...-+|+|||+| .+ +....++.+++++|..+.+.
T Consensus 231 ~g~l~g~~~~~faf~Gfd~v~~~aeE~knP~r~iP----~aii~sl~i~~vlY~lv~~~ 285 (557)
T TIGR00906 231 TGVLSGAATCFFAFIGFDAIATTGEEVKNPQRAIP----IGIVTSLLVCFVAYFLMSAA 285 (557)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHhHHhccCcccccc----HHHHHHHHHHHHHHHHHHHH
Confidence 35667777888999999999999999999975 44 37889999999999987654
No 18
>PF13520 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3GI8_C 3GIA_A 3GI9_C 3OB6_A 3L1L_A 3LRC_D 3LRB_B 4DJK_A 4DJI_A ....
Probab=93.93 E-value=0.042 Score=51.15 Aligned_cols=60 Identities=15% Similarity=0.168 Sum_probs=48.4
Q ss_pred chhHHHHHHHHHhccccchhhhhhhhcCCCCCCCCcchhhHHHHHHHHHHHHHHHhhhHhhcccC
Q psy16921 157 EVPLFMGTFLFASLGIGVLIALEDEMKTPSSYRKNPFGIFNMGFTTIIIIYLFVGVIGYYKYGQL 221 (235)
Q Consensus 157 ~~~~~~G~~~faf~g~~~l~~I~~~m~~p~~~~~~~~~v~~~s~~~~~~~Y~~~g~~GY~afG~~ 221 (235)
.....++...|+|.|-.......+|+|| ++.+ |++..+...+.++|......-....+++
T Consensus 189 ~~~~~~~~~~~~~~G~e~~~~~~~E~k~-k~ip----~ai~~~~~~~~i~y~l~~~~~~~~~~~~ 248 (426)
T PF13520_consen 189 GFLAGFSVAFFAFSGFEAIASLAEENKN-KTIP----RAIIISIIIVAIIYILFSIALLGALPDD 248 (426)
T ss_dssp HHHHHHHHHGGGGTTTTHHHHGGGGSSS-HHHH----HHHHHHHHHHHHHHHHHHHHHHTTSTHC
T ss_pred chhhHHHHHHhhcccccccccccccccc-hhhe----eecccchhHHHHHHhhhhheeeecccch
Confidence 4567888899999999999999999887 4444 4788999999999999877666655553
No 19
>PRK11021 putative transporter; Provisional
Probab=93.61 E-value=0.45 Score=44.50 Aligned_cols=55 Identities=18% Similarity=0.387 Sum_probs=46.0
Q ss_pred ccchhHHHHHHHHHhccccchhhhhhhhcCCCC-CCCCcchhhHHHHHHHHHHHHHHHhh
Q psy16921 155 LYEVPLFMGTFLFASLGIGVLIALEDEMKTPSS-YRKNPFGIFNMGFTTIIIIYLFVGVI 213 (235)
Q Consensus 155 ~~~~~~~~G~~~faf~g~~~l~~I~~~m~~p~~-~~~~~~~v~~~s~~~~~~~Y~~~g~~ 213 (235)
+.++..++....|+|.|.......-+|+|||+| .+| ++..+...+.++|+...+.
T Consensus 176 ~~~~~~~~~~~~~af~G~e~~~~~a~E~k~P~k~iPr----Ai~~~~~~~~~lYil~~~~ 231 (410)
T PRK11021 176 WSGLFAALGVMFWCFVGIEAFAHLASEFKNPERDFPR----ALMIGLLLAGLVYWACTVV 231 (410)
T ss_pred HHHHHHHHHHHHHHHhcHHHHHhhHHhccCccccccH----HHHHHHHHHHHHHHHHHHH
Confidence 455667788888999999999999999999974 444 7889999999999987654
No 20
>TIGR00908 2A0305 ethanolamine permease. The three genes used as the seed for this model (from Burkholderia pseudomallei, Pseudomonas aeruginosa and Clostridium acetobutylicum are all adjacent to genes for the catabolism of ethanolamine. Most if not all of the hits to this model have a similar arrangement of genes. This group is a member of the Amino Acid-Polyamine-Organocation (APC) Superfamily.
Probab=93.58 E-value=0.65 Score=43.84 Aligned_cols=52 Identities=13% Similarity=0.057 Sum_probs=40.5
Q ss_pred chhHHHHHHHHHhccccchhhhhhhhcCCCC-CCCCcchhhHHHHHHHHHHHHHHHh
Q psy16921 157 EVPLFMGTFLFASLGIGVLIALEDEMKTPSS-YRKNPFGIFNMGFTTIIIIYLFVGV 212 (235)
Q Consensus 157 ~~~~~~G~~~faf~g~~~l~~I~~~m~~p~~-~~~~~~~v~~~s~~~~~~~Y~~~g~ 212 (235)
.+..++....|+|.|.......-+|+|||+| .+| ++..+..++.++|+..-.
T Consensus 192 ~~~~~~~~~~~af~G~e~~~~~aeE~k~P~r~ipr----ai~~s~~~~~~~~~~~~~ 244 (442)
T TIGR00908 192 GVFAAIPFAIWFFLAVEGVAMAAEETKNPKRDIPR----GLIGAILTLLALAAGILV 244 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccCH----HHHHHHHHHHHHHHHHHH
Confidence 4455666678999999999999999999975 444 677888888888876644
No 21
>TIGR00912 2A0309 spore germination protein (amino acid permease). This model describes spore germination protein GerKB and paralogs from Bacillus subtilis, Clostridium tetani, and other known or predicted endospore-forming members of the Firmicutes (low-GC Gram positive bacteria). Members show some similarity to amino acid permeases.
Probab=93.42 E-value=0.14 Score=46.88 Aligned_cols=57 Identities=14% Similarity=0.194 Sum_probs=46.4
Q ss_pred HHHHHhccccchhhhhhhhcCCCCCCCCcchhhHHHHHHHHHHHHHHHhhhHhhcccCccc
Q psy16921 164 TFLFASLGIGVLIALEDEMKTPSSYRKNPFGIFNMGFTTIIIIYLFVGVIGYYKYGQLVEG 224 (235)
Q Consensus 164 ~~~faf~g~~~l~~I~~~m~~p~~~~~~~~~v~~~s~~~~~~~Y~~~g~~GY~afG~~v~~ 224 (235)
...++|.+...+.....++|||++.+| ....+...++++|...-+..-..+|.+..+
T Consensus 187 ~~~~~f~g~~i~~~~~~~~~~~~~~~k----~~~~~~~~~~~ly~~~~~~~i~~lg~~~~~ 243 (359)
T TIGR00912 187 VVTFAFGEIEIFFLLFPLLSKKKKIKK----SIIKAIIIGVLLYILTTFVSISVFGGNVTK 243 (359)
T ss_pred HhhhhhHHHHHHHHHHHHhCChhhhHH----HHHHHHHHHHHHHHHHHHHHHheecHHHhh
Confidence 456888888888888899999887665 788999999999999888888888865433
No 22
>KOG1287|consensus
Probab=93.30 E-value=1.2 Score=43.63 Aligned_cols=57 Identities=23% Similarity=0.265 Sum_probs=46.8
Q ss_pred ccchhHHHHHHHHHhccccchhhhhhhhcCCCCCCCCcchhhHHHHHHHHHHHHHHHhhh
Q psy16921 155 LYEVPLFMGTFLFASLGIGVLIALEDEMKTPSSYRKNPFGIFNMGFTTIIIIYLFVGVIG 214 (235)
Q Consensus 155 ~~~~~~~~G~~~faf~g~~~l~~I~~~m~~p~~~~~~~~~v~~~s~~~~~~~Y~~~g~~G 214 (235)
..++.+++=.-.|||.|=..+=.+-+|+|||+|=- +++...++.+++++|+.+=+..
T Consensus 203 ~g~i~lafysglfa~~GWd~lN~vteEiknP~ktL---P~Ai~isi~lvt~iYil~NvAy 259 (479)
T KOG1287|consen 203 VGNIALAFYSGLFAFSGWDYLNYVTEEIKNPRRTL---PRAILISIPLVTVIYVLVNVAY 259 (479)
T ss_pred hHHHHHHHHHhhhcccCchhhccchHhhcCccccc---hHHHHHhhHHHHHHHHHhHhhe
Confidence 34577888888899999988888999999996433 3489999999999999986644
No 23
>PRK10655 potE putrescine transporter; Provisional
Probab=92.95 E-value=0.37 Score=45.44 Aligned_cols=54 Identities=20% Similarity=0.187 Sum_probs=43.6
Q ss_pred chhHHHHHHHHHhccccchhhhhhhhcCCCC-CCCCcchhhHHHHHHHHHHHHHHHhhh
Q psy16921 157 EVPLFMGTFLFASLGIGVLIALEDEMKTPSS-YRKNPFGIFNMGFTTIIIIYLFVGVIG 214 (235)
Q Consensus 157 ~~~~~~G~~~faf~g~~~l~~I~~~m~~p~~-~~~~~~~v~~~s~~~~~~~Y~~~g~~G 214 (235)
.+..++....|+|.|-......-+|+|||+| .+| ++..+...+.++|+......
T Consensus 190 ~~~~~~~~~~~af~G~e~~~~~a~E~k~P~r~iPr----Ai~~~~~~~~~~Y~l~~~~~ 244 (438)
T PRK10655 190 AVGSSIAMTLWAFLGLESACANSDAVENPERNVPI----AVLGGTLGAAVIYIVSTNVI 244 (438)
T ss_pred HHHHHHHHHHHHHhhhhhhhhhHHHhhCccccccH----HHHHHHHHHHHHHHHHHHHH
Confidence 4445566778999999999999999999974 444 78899999999998866543
No 24
>TIGR00930 2a30 K-Cl cotransporter.
Probab=92.49 E-value=1.1 Score=47.53 Aligned_cols=52 Identities=19% Similarity=0.185 Sum_probs=42.5
Q ss_pred hhHHHHHHHHHhccccchhhhhhhhcCCCCCCCCcchhhHHHHHHHHHHHHHHHh
Q psy16921 158 VPLFMGTFLFASLGIGVLIALEDEMKTPSSYRKNPFGIFNMGFTTIIIIYLFVGV 212 (235)
Q Consensus 158 ~~~~~G~~~faf~g~~~l~~I~~~m~~p~~~~~~~~~v~~~s~~~~~~~Y~~~g~ 212 (235)
+...+|++.+||.|.....++-+|+|||+|--. +....++.+++++|+.+.+
T Consensus 282 f~~~~ai~F~A~tGi~agan~sgElKnP~r~IP---ratl~ai~i~~vlYllv~~ 333 (953)
T TIGR00930 282 FFSLFGIFFPSVTGILAGANISGDLKDPQKAIP---KGTLLAILTTTVVYLGSVV 333 (953)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccChhhhhH---HHHHHHHHHHHHHHHHHHH
Confidence 566677777799998889999999999974322 3688999999999999875
No 25
>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family. This family includes several families of antiporters that, rather commonly, are encoded next to decarboxylases that convert one of the antiporter substrates into the other. This arrangement allows a cycle that can remove proteins from the cytoplasm and thereby protect against acidic conditions.
Probab=92.12 E-value=0.49 Score=45.31 Aligned_cols=56 Identities=20% Similarity=0.266 Sum_probs=43.9
Q ss_pred cchhHHHHHHHHHhccccchhhhhhhhcCCCCCCCCcchhhHHHHHHHHHHHHHHHhhhH
Q psy16921 156 YEVPLFMGTFLFASLGIGVLIALEDEMKTPSSYRKNPFGIFNMGFTTIIIIYLFVGVIGY 215 (235)
Q Consensus 156 ~~~~~~~G~~~faf~g~~~l~~I~~~m~~p~~~~~~~~~v~~~s~~~~~~~Y~~~g~~GY 215 (235)
..+..++....|+|.|-......-+|+||+++.+| .+..+..++.++|+.......
T Consensus 199 ~~~~~~~~~~~~af~G~e~~~~~a~E~k~~r~iPr----ai~~~~~i~~~~Yil~~~~~~ 254 (473)
T TIGR00905 199 SQVKNTMLVTLWVFIGIEGAVVSSGRAKNKSDVGK----ATVLGTLGALVIYILITLLSL 254 (473)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHhccccchH----HHHHHHHHHHHHHHHHHHHHH
Confidence 34556677788999999999999999999334444 788999999999998876543
No 26
>PRK10435 cadB lysine/cadaverine antiporter; Provisional
Probab=92.01 E-value=0.37 Score=45.62 Aligned_cols=57 Identities=16% Similarity=0.067 Sum_probs=47.3
Q ss_pred ccchhHHHHHHHHHhccccchhhhhhhhcCCC-CCCCCcchhhHHHHHHHHHHHHHHHhhhH
Q psy16921 155 LYEVPLFMGTFLFASLGIGVLIALEDEMKTPS-SYRKNPFGIFNMGFTTIIIIYLFVGVIGY 215 (235)
Q Consensus 155 ~~~~~~~~G~~~faf~g~~~l~~I~~~m~~p~-~~~~~~~~v~~~s~~~~~~~Y~~~g~~GY 215 (235)
..++..++....|+|.|-......-+|+|||+ +.+| +...+...+.++|+...+.-.
T Consensus 186 ~~~~~~a~~~~~faf~G~E~~~~~a~E~knP~r~iPr----Ai~~~~~iv~ilYil~~~~~~ 243 (435)
T PRK10435 186 GHAIIKSILLCLWAFVGVESAAVSTGMVKNPKRTVPL----ATMLGTGLAGIIYIAATQVIS 243 (435)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHhhCccccccH----HHHHHHHHHHHHHHHHHHHHH
Confidence 44667777888999999999999999999996 4555 788999999999998876543
No 27
>PRK10644 arginine:agmatin antiporter; Provisional
Probab=91.53 E-value=0.69 Score=43.81 Aligned_cols=55 Identities=11% Similarity=0.100 Sum_probs=44.1
Q ss_pred chhHHHHHHHHHhccccchhhhhhhhcCCCCCCCCcchhhHHHHHHHHHHHHHHHhhh
Q psy16921 157 EVPLFMGTFLFASLGIGVLIALEDEMKTPSSYRKNPFGIFNMGFTTIIIIYLFVGVIG 214 (235)
Q Consensus 157 ~~~~~~G~~~faf~g~~~l~~I~~~m~~p~~~~~~~~~v~~~s~~~~~~~Y~~~g~~G 214 (235)
.+..++....|+|.|-......-+|+|||+|--+ |++..+...+.++|..+.+.-
T Consensus 192 ~~~~~~~~~~~af~G~e~~~~~aeE~k~P~r~iP---rai~~s~~i~~v~Y~l~~~~~ 246 (445)
T PRK10644 192 AIQSTLNVTLWSFIGVESASVAAGVVKNPKRNVP---IATIGGVLIAAVCYVLSSTAI 246 (445)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHhhCcccchh---HHHHHHHHHHHHHHHHHHHHH
Confidence 3445566788999999999999999999975332 378899999999999887653
No 28
>TIGR00911 2A0308 L-type amino acid transporter.
Probab=91.31 E-value=0.78 Score=44.21 Aligned_cols=56 Identities=16% Similarity=0.189 Sum_probs=45.9
Q ss_pred ccchhHHHHHHHHHhccccchhhhhhhhcCCCC-CCCCcchhhHHHHHHHHHHHHHHHhhh
Q psy16921 155 LYEVPLFMGTFLFASLGIGVLIALEDEMKTPSS-YRKNPFGIFNMGFTTIIIIYLFVGVIG 214 (235)
Q Consensus 155 ~~~~~~~~G~~~faf~g~~~l~~I~~~m~~p~~-~~~~~~~v~~~s~~~~~~~Y~~~g~~G 214 (235)
..++..++....|+|.|-.......+|+|||+| .+| ++..+...+.++|+...+.-
T Consensus 234 ~~~~~~a~~~~~~af~G~e~~~~~a~E~knP~r~iPr----Ai~~s~~~v~~~Y~l~~~a~ 290 (501)
T TIGR00911 234 AGGIVLAFYSGIWAYGGWNYLNFVTEEVKNPYRTLPI----AIIISMPIVTFIYVLTNIAY 290 (501)
T ss_pred HHHHHHHHHHHHHHHHhHHHHhhhHHHhcCchhhhHH----HHHHHHHHHHHHHHHHHHHH
Confidence 345666778889999999999999999999964 444 78899999999999886543
No 29
>PRK11357 frlA putative fructoselysine transporter; Provisional
Probab=91.18 E-value=1.1 Score=42.49 Aligned_cols=55 Identities=9% Similarity=0.204 Sum_probs=44.4
Q ss_pred cchhHHHHHHHHHhccccchhhhhhhhcCCCCCCCCcchhhHHHHHHHHHHHHHHHhh
Q psy16921 156 YEVPLFMGTFLFASLGIGVLIALEDEMKTPSSYRKNPFGIFNMGFTTIIIIYLFVGVI 213 (235)
Q Consensus 156 ~~~~~~~G~~~faf~g~~~l~~I~~~m~~p~~~~~~~~~v~~~s~~~~~~~Y~~~g~~ 213 (235)
..+..++....|+|.|-.......+|+|||+|-- .+++..++..++++|+.....
T Consensus 195 ~~~~~~~~~~~~af~G~e~~~~~a~E~k~P~r~i---P~Ai~~~~~i~~~~Y~l~~~~ 249 (445)
T PRK11357 195 MALLAGISATSWSYTGMASICYMTGEIKNPGKTM---PRALIGSCLLVLVLYTLLALV 249 (445)
T ss_pred HHHHHHHHHHHHHHhhHHHHHhhHHHhcCccccc---hHHHHHHHHHHHHHHHHHHHH
Confidence 3455667778999999999999999999997432 237889999999999887654
No 30
>TIGR03810 arg_ornith_anti arginine/ornithine antiporter. Members of this protein family are the arginine/ornithine antiporter, ArcD. This exchanger of ornithine for arginine occurs in a system with arginine deiminase, ornithine carbamoyltransferase, and carbamate kinase, with together turn arginine to ornithine with the generation of ATP and release of CO2.
Probab=91.06 E-value=2.3 Score=40.71 Aligned_cols=59 Identities=22% Similarity=0.299 Sum_probs=45.6
Q ss_pred chhHHHHHHHHHhccccchhhhhhhhcCCCCCCCCcchhhHHHHHHHHHHHHHHHhhhHhhcc
Q psy16921 157 EVPLFMGTFLFASLGIGVLIALEDEMKTPSSYRKNPFGIFNMGFTTIIIIYLFVGVIGYYKYG 219 (235)
Q Consensus 157 ~~~~~~G~~~faf~g~~~l~~I~~~m~~p~~~~~~~~~v~~~s~~~~~~~Y~~~g~~GY~afG 219 (235)
.+..++....|+|.|-.....+.+|.|||++.+| +...+...++++|..+.+..+...+
T Consensus 196 ~~~~~~~~~~~~f~G~e~~~~~a~e~k~~k~ip~----ai~~~~~~v~~lY~l~~~~~~g~~~ 254 (468)
T TIGR03810 196 QVKNMMLVTVWVFIGIEGASMLSARAEKRSDVGK----ATVIGLIGVLAIYVLVSVLSYGIMT 254 (468)
T ss_pred HHHHHHHHHHHHHHhHhHHhhhHhhccCcccchH----HHHHHHHHHHHHHHHHHHHHHhCcC
Confidence 3445667788999999888888899988555554 7889999999999988876554443
No 31
>PF03845 Spore_permease: Spore germination protein; InterPro: IPR004761 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [, , ]. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. Spore germination protein (amino acid permease) is involved in the response to the germinative mixture of L-asparagine, glucose, fructose and potassium ions (AFFK). These proteins could be amino acid transporters.; GO: 0009847 spore germination, 0016021 integral to membrane
Probab=89.98 E-value=0.81 Score=41.46 Aligned_cols=65 Identities=17% Similarity=0.123 Sum_probs=48.7
Q ss_pred ccchhHHHHHHHHHhccccchhhhhhhhcCCCCCCCCcchhhHHHHHHHHHHHHHHHhhhHhhcccCcc
Q psy16921 155 LYEVPLFMGTFLFASLGIGVLIALEDEMKTPSSYRKNPFGIFNMGFTTIIIIYLFVGVIGYYKYGQLVE 223 (235)
Q Consensus 155 ~~~~~~~~G~~~faf~g~~~l~~I~~~m~~p~~~~~~~~~v~~~s~~~~~~~Y~~~g~~GY~afG~~v~ 223 (235)
+.+.....-...+.|.+...+.-+...+|+|++.+| ....+.....++|...-+.....||.+..
T Consensus 174 ~~~i~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~k----~~~~~~~~~~~~~~~~~~~~i~vfG~~~~ 238 (320)
T PF03845_consen 174 IKPILKGSLVISFPFGGIEILLFLFPFVKDKKKLKK----SLLIAILISGLFLLFIIFITIGVFGPELA 238 (320)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHH----HHHHHHHHHHHHHHHHHHHHHHhcCHHHH
Confidence 444555555566777777777788889999877665 68888888888888888888888886543
No 32
>COG0531 PotE Amino acid transporters [Amino acid transport and metabolism]
Probab=89.89 E-value=1.1 Score=41.87 Aligned_cols=60 Identities=15% Similarity=0.256 Sum_probs=48.8
Q ss_pred chhHHHHHHHHHhccccchhhhhhhhcCCCCC-CCCcchhhHHHHHHHHHHHHHHHhhhHhhccc
Q psy16921 157 EVPLFMGTFLFASLGIGVLIALEDEMKTPSSY-RKNPFGIFNMGFTTIIIIYLFVGVIGYYKYGQ 220 (235)
Q Consensus 157 ~~~~~~G~~~faf~g~~~l~~I~~~m~~p~~~-~~~~~~v~~~s~~~~~~~Y~~~g~~GY~afG~ 220 (235)
.+...+....++|.|-....+.-+|+|||+|- +| .+..++..+.++|....+.-....++
T Consensus 202 ~~~~~~~~~~~~f~G~e~~~~~a~E~knp~r~ip~----aii~~~~~~~~~y~~~~~~~~~~~~~ 262 (466)
T COG0531 202 GILAAILLAFFAFTGFEAIATLAEEVKNPKRTIPR----AIILSLLIVLILYILGALVIVGVLPA 262 (466)
T ss_pred HHHHHHHHHHHHhhcHHHHHHHHHHhcCccccccH----HHHHHHHHHHHHHHHHHHHHHhCccH
Confidence 45667777889999999999999999999644 44 67788899999999988777666665
No 33
>TIGR01773 GABAperm gamma-aminobutyrate permease. GabP is highly homologous to amino acid permeases from B. subtilis, E. coli, as well as to other members of the amino acid permease family (pfam00324). A member of the APC (amine-polyamine-choline) transporter superfamily, GABA permease possesses a "consensus amphiphatic region" (CAR) found to be evolutionarily conserved within this transport family. This amphiphatic region is located between helix 8 and cytoplasmic loop 8-9, forming a potential channel domain and suggested to play a significant role in ligand recognition and translocation. Unique to GABA permeases, a conserved cysteine residue (CYS-300, E.coli) located at the beginning of the amphiphatic domain, has been determined to be critical for catalytic specificity.
Probab=89.88 E-value=2.4 Score=40.23 Aligned_cols=54 Identities=22% Similarity=0.212 Sum_probs=42.5
Q ss_pred cchhHHHHHHHHHhccccchhhhhhhhcCCCC-CCCCcchhhHHHHHHHHHHHHHHHhh
Q psy16921 156 YEVPLFMGTFLFASLGIGVLIALEDEMKTPSS-YRKNPFGIFNMGFTTIIIIYLFVGVI 213 (235)
Q Consensus 156 ~~~~~~~G~~~faf~g~~~l~~I~~~m~~p~~-~~~~~~~v~~~s~~~~~~~Y~~~g~~ 213 (235)
..+..++....|+|.|.......-+|+|||+| .+| +...+...+.++|+.....
T Consensus 201 ~~~~~a~~~~~~af~G~e~~~~~a~E~k~P~r~iPr----Ai~~~~~~~~~~y~l~~~~ 255 (452)
T TIGR01773 201 GAVLLAILVTMFSFMGTEIVTIAAAESSNPIKSITR----ATNSVIWRIIVFYLGSIFI 255 (452)
T ss_pred HHHHHHHHHHHHHhccHHHHhHHHHhhcChhhHHHH----HHHHHHHHHHHHHHHHHHH
Confidence 35677788899999999999999999999974 333 5666777788888876443
No 34
>PRK10580 proY putative proline-specific permease; Provisional
Probab=88.28 E-value=3.2 Score=39.53 Aligned_cols=52 Identities=19% Similarity=0.234 Sum_probs=39.7
Q ss_pred chhHHHHHHHHHhccccchhhhhhhhcCCCC-CCCCcchhhHHHHHHHHHHHHHHHh
Q psy16921 157 EVPLFMGTFLFASLGIGVLIALEDEMKTPSS-YRKNPFGIFNMGFTTIIIIYLFVGV 212 (235)
Q Consensus 157 ~~~~~~G~~~faf~g~~~l~~I~~~m~~p~~-~~~~~~~v~~~s~~~~~~~Y~~~g~ 212 (235)
.+..++....|+|.|-.......+|+|||+| .+| +...+...+.++|+....
T Consensus 200 ~~~~~~~~~~fsf~G~e~~~~~a~E~knP~k~iPr----Ai~~~~~~~~~~y~~~~~ 252 (457)
T PRK10580 200 GMVMSLQMVMFAYGGIEIIGITAGEAKDPEKSIPR----AINSVPMRILVFYVGTLF 252 (457)
T ss_pred HHHHHHHHHHHHHhCHHHHHHHHHHhcChhhHHHH----HHHHHHHHHHHHHHHHHH
Confidence 4556777788999999999999999999985 343 455666667777776643
No 35
>PRK10746 putative transport protein YifK; Provisional
Probab=87.61 E-value=3.4 Score=39.62 Aligned_cols=56 Identities=13% Similarity=0.061 Sum_probs=43.1
Q ss_pred ccchhHHHHHHHHHhccccchhhhhhhhcCCCCCCCCcchhhHHHHHHHHHHHHHHHhh
Q psy16921 155 LYEVPLFMGTFLFASLGIGVLIALEDEMKTPSSYRKNPFGIFNMGFTTIIIIYLFVGVI 213 (235)
Q Consensus 155 ~~~~~~~~G~~~faf~g~~~l~~I~~~m~~p~~~~~~~~~v~~~s~~~~~~~Y~~~g~~ 213 (235)
+..+..++....|+|.|...+...-+|+|||+|-- +++...++..+.++|+.....
T Consensus 199 ~~g~~~~~~~~~faf~G~e~v~~~a~E~knP~k~i---P~Ai~~~~~~i~~~yv~~~~~ 254 (461)
T PRK10746 199 WKGFLTALCIVVASYQGVELIGITAGEAKNPQVTL---RSAVGKVLWRILIFYVGAIFV 254 (461)
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHhcChhhHH---HHHHHHHHHHHHHHHHHHHHH
Confidence 44566788889999999999999999999997432 246777777778888775433
No 36
>TIGR00907 2A0304 amino acid permease (GABA permease).
Probab=86.89 E-value=9.3 Score=36.50 Aligned_cols=57 Identities=11% Similarity=0.140 Sum_probs=37.0
Q ss_pred HHHHHHHHHhccccchhhhhhhhcCCCCCCCCcchhhHHHHHHHHHHHHHHHhhhHhhcc
Q psy16921 160 LFMGTFLFASLGIGVLIALEDEMKTPSSYRKNPFGIFNMGFTTIIIIYLFVGVIGYYKYG 219 (235)
Q Consensus 160 ~~~G~~~faf~g~~~l~~I~~~m~~p~~~~~~~~~v~~~s~~~~~~~Y~~~g~~GY~afG 219 (235)
.++-...|+|.|-......-+|+|||+|--. +++..+..+..+++....+.-+...+
T Consensus 221 ~~~~~~~fsf~G~e~~~~~a~E~knP~r~iP---~Ai~~s~~i~~~~~~~~~l~~~~~~~ 277 (482)
T TIGR00907 221 LGLLNPAWSMTGYDGTAHMAEEIENPEVVGP---RAIIGAVAIGIVTGFCFNIVLFFSMG 277 (482)
T ss_pred hhhhhhHHHhcCcchhhHHHHhcCChhhhcC---HHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 3344466999999999999999999974322 36767776655544443333333334
No 37
>PRK10238 aromatic amino acid transporter; Provisional
Probab=86.88 E-value=3.7 Score=39.19 Aligned_cols=50 Identities=20% Similarity=0.287 Sum_probs=38.2
Q ss_pred chhHHHHHHHHHhccccchhhhhhhhcCCCC-CCCCcchhhHHHHHHHHHHHHHH
Q psy16921 157 EVPLFMGTFLFASLGIGVLIALEDEMKTPSS-YRKNPFGIFNMGFTTIIIIYLFV 210 (235)
Q Consensus 157 ~~~~~~G~~~faf~g~~~l~~I~~~m~~p~~-~~~~~~~v~~~s~~~~~~~Y~~~ 210 (235)
.+..+++...|+|.|-......-+|+|||+| .+| ++..++..+.+.|+..
T Consensus 201 ~~~~~~~~~~~af~G~e~~~~~aeE~knP~r~iPr----Ai~~~~~~i~~~y~~~ 251 (456)
T PRK10238 201 GLVMMMAIIMFSFGGLELVGITAAEADNPEQSIPK----ATNQVIYRILIFYIGS 251 (456)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHhhcChhhHHHH----HHHHHHHHHHHHHHHH
Confidence 4446677788999999999999999999975 443 5666677777777654
No 38
>PRK10197 gamma-aminobutyrate transporter; Provisional
Probab=86.47 E-value=5.2 Score=38.08 Aligned_cols=55 Identities=22% Similarity=0.196 Sum_probs=44.3
Q ss_pred ccchhHHHHHHHHHhccccchhhhhhhhcCCCC-CCCCcchhhHHHHHHHHHHHHHHHhh
Q psy16921 155 LYEVPLFMGTFLFASLGIGVLIALEDEMKTPSS-YRKNPFGIFNMGFTTIIIIYLFVGVI 213 (235)
Q Consensus 155 ~~~~~~~~G~~~faf~g~~~l~~I~~~m~~p~~-~~~~~~~v~~~s~~~~~~~Y~~~g~~ 213 (235)
+.++..++....|+|.|-......-+|+|||+| .+| +...++..+.++|+...+.
T Consensus 180 ~~~~~~a~~~~~faf~G~e~~~~~a~E~knP~r~iPr----ai~~~~~~i~i~Yil~~~~ 235 (446)
T PRK10197 180 FGAVLSAMLITMFSFMGAEIVTIAAAESDTPEKHIVR----ATNSVIWRISIFYLCSIFV 235 (446)
T ss_pred HHHHHHHHHHHHHHHhCHHHHHHHHHHhcChhhhHHH----HHHHHHHHHHHHHHHHHHH
Confidence 346677888889999999999999999999975 333 6777888888899886554
No 39
>PF00324 AA_permease: Amino acid permease; InterPro: IPR004841 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [], [], []. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. This domain is found in a wide variety of permeases, as well as several hypothetical proteins. ; GO: 0006810 transport, 0055085 transmembrane transport, 0016020 membrane
Probab=86.14 E-value=1.4 Score=42.09 Aligned_cols=65 Identities=14% Similarity=0.062 Sum_probs=50.9
Q ss_pred ccchhHHHHHHHHHhccccchhhhhhhhcCCCCCCCCcchhhHHHHHHHHHHHHHHHhhhHhhcccCc
Q psy16921 155 LYEVPLFMGTFLFASLGIGVLIALEDEMKTPSSYRKNPFGIFNMGFTTIIIIYLFVGVIGYYKYGQLV 222 (235)
Q Consensus 155 ~~~~~~~~G~~~faf~g~~~l~~I~~~m~~p~~~~~~~~~v~~~s~~~~~~~Y~~~g~~GY~afG~~v 222 (235)
+.++..++....++|.|.......-+|.|||+|--+ +....++..+.++|+.....--...|.+.
T Consensus 199 ~~~~~~~~~~~~~af~G~e~~a~~a~E~k~P~k~IP---ra~~~~~~~~~v~y~~~~~~~~~~~~~~~ 263 (478)
T PF00324_consen 199 FSGFFAALVFAFFAFVGFESIAILAEEAKNPRKTIP---RATLLSVLRIGVFYVLTSYALTLAVPYDN 263 (478)
T ss_pred hhHHHHhhhhhhcccccccccccccccCCCchhhhh---hHhhhhhhhhhhhhhhhhhhcccccCccc
Confidence 456778888889999999999999999999974432 37888999999999987765555555443
No 40
>PRK10249 phenylalanine transporter; Provisional
Probab=85.92 E-value=6 Score=37.80 Aligned_cols=56 Identities=16% Similarity=0.180 Sum_probs=43.8
Q ss_pred ccchhHHHHHHHHHhccccchhhhhhhhcCCCCCCCCcchhhHHHHHHHHHHHHHHHhh
Q psy16921 155 LYEVPLFMGTFLFASLGIGVLIALEDEMKTPSSYRKNPFGIFNMGFTTIIIIYLFVGVI 213 (235)
Q Consensus 155 ~~~~~~~~G~~~faf~g~~~l~~I~~~m~~p~~~~~~~~~v~~~s~~~~~~~Y~~~g~~ 213 (235)
+..+..++....|+|.|-......-+|+|||+|-- ++++..+...+.++|......
T Consensus 208 ~~~~~~~~~~~~~af~G~e~~~~~a~E~~~P~k~i---Prai~~~~~~~~~~y~~~~~~ 263 (458)
T PRK10249 208 WNGLILSLAVIMFSFGGLELIGITAAEARDPEKSI---PKAVNQVVYRILLFYIGSLVV 263 (458)
T ss_pred HHHHHHHHHHHHHHHcCHHHHHHHHHHhcCHhhHH---HHHHHHHHHHHHHHHHHHHHH
Confidence 44566778888999999999999999999997532 236778888888888775443
No 41
>TIGR03428 ureacarb_perm permease, urea carboxylase system. A number of bacteria obtain nitrogen by biotin- and ATP-dependent urea degradation system distinct from urease. The two characterized proteins of this system are the enzymes urea carboxylase and allophanate hydrolase, but other, uncharacterized proteins co-occur as genes encoded nearby in multiple organisms. This family includes predicted permeases of the amino acid permease family, likely to transport either urea or a compound from which urea is derived. It is found so far only Actinobacteria, whereas a number of other species with the urea carboxylase have an adjacent ABC transporter operon.
Probab=85.52 E-value=5.5 Score=38.17 Aligned_cols=57 Identities=11% Similarity=-0.017 Sum_probs=39.7
Q ss_pred HHHHHHHHhccccchhhhhhhhcCCCCCCCCcchhhHHHHHHHHHHHHHHHhhhHhhccc
Q psy16921 161 FMGTFLFASLGIGVLIALEDEMKTPSSYRKNPFGIFNMGFTTIIIIYLFVGVIGYYKYGQ 220 (235)
Q Consensus 161 ~~G~~~faf~g~~~l~~I~~~m~~p~~~~~~~~~v~~~s~~~~~~~Y~~~g~~GY~afG~ 220 (235)
..-...|+|.|-.....+-+|+|||+|--. |.+..+..++.++|..+-+......++
T Consensus 218 ~~~~~~~~f~G~e~~~~~aeE~knP~r~iP---rai~~s~~i~~~~~~~~~~~~~~~~~~ 274 (475)
T TIGR03428 218 SGLMAAYVMVGFGSAGELSEETKNPRRVAP---RTILTALSVSALGGGLMILGALMAAPS 274 (475)
T ss_pred HHHHHHHHhcCcchHHHHHHHhcCcchhhh---HHHHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 344567899999999999999999975332 367778877776666555444444443
No 42
>TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter. Lowered cutoffs from 1000/500 to 800/300, promoted from subfamily to equivalog, and put into a Genome Property DHH 9/1/2009
Probab=84.77 E-value=5.3 Score=38.91 Aligned_cols=47 Identities=17% Similarity=0.254 Sum_probs=36.5
Q ss_pred HHHHHHHHhccccchhhhhhhhcCCCC-CCCCcchhhHHHHHHHHHHHHHHH
Q psy16921 161 FMGTFLFASLGIGVLIALEDEMKTPSS-YRKNPFGIFNMGFTTIIIIYLFVG 211 (235)
Q Consensus 161 ~~G~~~faf~g~~~l~~I~~~m~~p~~-~~~~~~~v~~~s~~~~~~~Y~~~g 211 (235)
.+-...|+|.|-......-+|+|||+| ++| ++..+...+.++|....
T Consensus 199 ~~~~~~faf~G~E~~a~~a~E~knP~r~~Pr----Ai~~~~i~~~~l~~l~~ 246 (507)
T TIGR00910 199 VFVAFIGAYMGVEASASHINELENPGRDYPL----AMILLMIAAICLDAIGG 246 (507)
T ss_pred HHHHHHHHHhcHHHHHHHHHHccCCcccccH----HHHHHHHHHHHHHHHHH
Confidence 333457899999999999999999974 555 67788888888887543
No 43
>TIGR00913 2A0310 amino acid permease (yeast).
Probab=83.73 E-value=7.2 Score=37.18 Aligned_cols=54 Identities=17% Similarity=0.113 Sum_probs=42.9
Q ss_pred cchhHHHHHHHHHhccccchhhhhhhhcCCCCCCCCcchhhHHHHHHHHHHHHHHHh
Q psy16921 156 YEVPLFMGTFLFASLGIGVLIALEDEMKTPSSYRKNPFGIFNMGFTTIIIIYLFVGV 212 (235)
Q Consensus 156 ~~~~~~~G~~~faf~g~~~l~~I~~~m~~p~~~~~~~~~v~~~s~~~~~~~Y~~~g~ 212 (235)
.++..++....|+|.|-.....+-+|+|||+|-- ++++..+...+.++|....+
T Consensus 197 ~~~~~~~~~~~~af~G~e~~~~~a~E~knP~r~i---Prai~~~~~~~~~~Y~l~~~ 250 (478)
T TIGR00913 197 KGVCSVFVTAAFSFGGTELVALTAGEAANPRKSI---PRAAKRTFWRILVFYILTLF 250 (478)
T ss_pred HHHHHHHHHHHhhhccHHHHHHHHHhhcChhhHH---HHHHHHHHHHHHHHHHHHHH
Confidence 4456667778899999999999999999997422 23788888899999998654
No 44
>TIGR00800 ncs1 NCS1 nucleoside transporter family. The NCS1 family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines. Members of this family possess twelve putative transmembrane a-helical spanners (TMSs). At least some of them have been shown to function in uptake by substrate:H+ symport mechanism.
Probab=82.07 E-value=6.9 Score=37.33 Aligned_cols=40 Identities=8% Similarity=-0.066 Sum_probs=35.4
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhCC
Q psy16921 2 DSVNIIIVDFFIFWNHLGICCVYINFIADNFDQACHHFSP 41 (235)
Q Consensus 2 ~~~g~~~v~~~i~i~~~G~ci~YlI~~~d~l~~v~~~~~~ 41 (235)
|.+|..+..+...+..+|-+.+=....++.+.++++...+
T Consensus 87 G~~Gs~~~~~~~~i~~igW~av~~~~~g~al~~~l~~i~~ 126 (442)
T TIGR00800 87 GIYGSLLPSLLRIVMAIGWYGVQAWVGGLCVALMLDSIFP 126 (442)
T ss_pred hhhHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcc
Confidence 7788899999999999999999999999999999888653
No 45
>PRK11049 D-alanine/D-serine/glycine permease; Provisional
Probab=79.26 E-value=4.5 Score=38.74 Aligned_cols=54 Identities=22% Similarity=0.263 Sum_probs=40.9
Q ss_pred cchhHHHHHHHHHhccccchhhhhhhhcCCCC-CCCCcchhhHHHHHHHHHHHHHHHhh
Q psy16921 156 YEVPLFMGTFLFASLGIGVLIALEDEMKTPSS-YRKNPFGIFNMGFTTIIIIYLFVGVI 213 (235)
Q Consensus 156 ~~~~~~~G~~~faf~g~~~l~~I~~~m~~p~~-~~~~~~~v~~~s~~~~~~~Y~~~g~~ 213 (235)
..+..++....|+|.|-......-+|+|||+| .+| ++..+...+.+.|......
T Consensus 211 ~~~~~~~~~~~~af~G~e~~~~~a~E~knP~r~iPr----ai~~~~~~~~~~y~l~~~~ 265 (469)
T PRK11049 211 SGFFAGFQIAVFAFVGIELVGTTAAETKDPEKSLPR----AINSIPIRIIMFYVFALIV 265 (469)
T ss_pred HHHHHHHHHHHHHHhcHHHHHHHHHHhcCHhhHHHH----HHHHHHHHHHHHHHHHHHH
Confidence 34667778889999999999999999999975 343 5556666667777765543
No 46
>KOG1286|consensus
Probab=79.17 E-value=55 Score=32.79 Aligned_cols=55 Identities=16% Similarity=0.298 Sum_probs=46.0
Q ss_pred ccchhHHHHHHHHHhccccchhhhhhhhcCCCCCCCCcchhhHHHHHHHHHHHHHHHh
Q psy16921 155 LYEVPLFMGTFLFASLGIGVLIALEDEMKTPSSYRKNPFGIFNMGFTTIIIIYLFVGV 212 (235)
Q Consensus 155 ~~~~~~~~G~~~faf~g~~~l~~I~~~m~~p~~~~~~~~~v~~~s~~~~~~~Y~~~g~ 212 (235)
+.++...+-+..|+|.|.-.+-.--+|-|||+|--. ++...++..++++|....+
T Consensus 231 f~Gv~s~~~~~~fsf~G~e~va~~a~E~kNP~k~IP---~ai~~s~~ri~~~Yi~~~~ 285 (554)
T KOG1286|consen 231 FKGVLSGAATAFFSFIGFELVATTAEEAKNPRKAIP---KAIKQSLLRILLFYILSSI 285 (554)
T ss_pred cceeeHHHHHHHHHHhhHHHHHHHHHhccCCccccc---HHHHHHHHHHHHHHHHHHH
Confidence 566778888899999999999999999999985443 4788999999999998765
No 47
>PRK11387 S-methylmethionine transporter; Provisional
Probab=76.09 E-value=23 Score=33.89 Aligned_cols=54 Identities=13% Similarity=0.173 Sum_probs=42.3
Q ss_pred chhHHHHHHHHHhccccchhhhhhhhcCCCC-CCCCcchhhHHHHHHHHHHHHHHHhhh
Q psy16921 157 EVPLFMGTFLFASLGIGVLIALEDEMKTPSS-YRKNPFGIFNMGFTTIIIIYLFVGVIG 214 (235)
Q Consensus 157 ~~~~~~G~~~faf~g~~~l~~I~~~m~~p~~-~~~~~~~v~~~s~~~~~~~Y~~~g~~G 214 (235)
.+..++....|+|.|-......-+|+|||+| .++ ++..+...+.++|+...+.-
T Consensus 207 ~~~~~~~~~~faf~G~e~~~~~a~E~knP~r~iPr----Ai~~~~~~~~~~y~~~~~~~ 261 (471)
T PRK11387 207 PILMTMVAVNFAFSGTELIGIAAGETENPAKVIPV----AIRTTIARLVIFFVGTVLVL 261 (471)
T ss_pred HHHHHHHHHHHHHcCHHHHHHHHHHhcChhhHHHH----HHHHHHHHHHHHHHHHHHHH
Confidence 3455666678999999999999999999975 333 67788888888888876543
No 48
>COG1113 AnsP Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]
Probab=74.40 E-value=17 Score=35.60 Aligned_cols=65 Identities=18% Similarity=0.220 Sum_probs=42.9
Q ss_pred cccchhHHHHHHHHHhccccchhhhhhhhcCCCCCCCCcchhhHHHHHHHHHHHH-----HHHhhhHhhcccC
Q psy16921 154 KLYEVPLFMGTFLFASLGIGVLIALEDEMKTPSSYRKNPFGIFNMGFTTIIIIYL-----FVGVIGYYKYGQL 221 (235)
Q Consensus 154 ~~~~~~~~~G~~~faf~g~~~l~~I~~~m~~p~~~~~~~~~v~~~s~~~~~~~Y~-----~~g~~GY~afG~~ 221 (235)
.+.++..++-+.+|||.|...+=.-..|-|||+|--. |+.+.-..=+.++|+ .+.+.=|=.++++
T Consensus 201 G~~g~~~~~~~v~Faf~GiElvGitA~Et~dP~k~ip---kAin~V~~RI~iFYvgsl~vi~~l~PW~~~~~~ 270 (462)
T COG1113 201 GFLGFLSALQIVMFAFGGIELVGITAAEAKDPEKAIP---KAINSVIWRILIFYVGSLFVILSLYPWNQIGED 270 (462)
T ss_pred chHHHHHHHHHHHHHHhhHHHHHHHHHhhcChhhHHH---HHHhhhhHHHHHHHHHHHHHHheeccccccCCC
Confidence 4456778888899999999888888899999986542 355555555555554 3444444444443
No 49
>TIGR02358 thia_cytX probable hydroxymethylpyrimidine transporter CytX. On the basis of a phylogenomic study of thiamine biosythetic, salvage, and transporter genes and a highly conserved RNA element THI, this protein family has been identified as a probable transporter of hydroxymethylpyrimidine (HMP), the phosphorylated (by ThiD) form of which gets joined (by ThiE) to hydroxyethylthiazole phosphate to make thiamine phosphate.
Probab=73.24 E-value=15 Score=34.63 Aligned_cols=73 Identities=11% Similarity=0.120 Sum_probs=48.4
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhCCCCcchhHHHHHHHHHHHHHHhcccCcccccccchh
Q psy16921 1 MDSVNIIIVDFFIFWNHLGICCVYINFIADNFDQACHHFSPDTSLAKIHWELIITVVMIVLNQVKNLHFLSPFSSI 76 (235)
Q Consensus 1 m~~~g~~~v~~~i~i~~~G~ci~YlI~~~d~l~~v~~~~~~~~~~~~~~~~~i~~vv~ipLs~i~~l~~Ls~~S~~ 76 (235)
+|.+|..+..+...+.+.|--.+=....++.++.+.+...+.. +...+..+..+++++.+.. ..|.++++...
T Consensus 68 FG~~Gs~~~~~l~~i~~igW~~v~~~~gg~~l~~~~~~~~~~~--~~~~~~~i~~~l~~~~~~~-G~~~i~~~~~~ 140 (386)
T TIGR02358 68 LGSKGSVLPSLLNLLQLVGWTAVMIIVGAKAASLLGGRLFGEE--SPMLWILIVGILVTLWLLS-GPLAFVWLNNW 140 (386)
T ss_pred HccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC--chHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 4788999999999999999888888899999999987653321 2233444555555555543 23444444433
No 50
>PRK15238 inner membrane transporter YjeM; Provisional
Probab=66.89 E-value=11 Score=36.43 Aligned_cols=51 Identities=25% Similarity=0.241 Sum_probs=40.5
Q ss_pred hhHHHHHHHHHhccccchhhhhhhhcCCCC-CCCCcchhhHHHHHHHHHHHHHHHh
Q psy16921 158 VPLFMGTFLFASLGIGVLIALEDEMKTPSS-YRKNPFGIFNMGFTTIIIIYLFVGV 212 (235)
Q Consensus 158 ~~~~~G~~~faf~g~~~l~~I~~~m~~p~~-~~~~~~~v~~~s~~~~~~~Y~~~g~ 212 (235)
+..++....|+|.|........+|+|||+| .+| ++..+...+.++|....+
T Consensus 213 ~~~~~~~~~~~f~G~e~~~~~a~E~~~p~~~~p~----ai~~~~~~~~~~y~l~~~ 264 (496)
T PRK15238 213 VLSFVVFAIFAYGGIEAVGGLVDKTENPEKNFPK----GIIIAAIVISIGYSLAIF 264 (496)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHhccCCCccccH----HHHHHHHHHHHHHHHHHH
Confidence 445556678999999999999999999974 444 788888888888887543
No 51
>TIGR03813 put_Glu_GABA_T putative glutamate/gamma-aminobutyrate antiporter. Members of this protein family are putative putative glutamate/gamma-aminobutyrate antiporters. Each member of the seed alignment is found adjacent to a glutamate decarboxylase, which converts glutamate (Glu) to gamma-aminobutyrate (GABA). However, the majority belong to genome contexts with a glutaminase (converts Gln to Glu) as well as the decarboxylase that converts Glu to GABA. The specificity of the transporter remains uncertain.
Probab=66.52 E-value=11 Score=35.94 Aligned_cols=52 Identities=8% Similarity=0.172 Sum_probs=40.1
Q ss_pred HHHHHhccccchhhhhhhhcCCCC-CCCCcchhhHHHHHHHHHHHHHHHhhhHhhcc
Q psy16921 164 TFLFASLGIGVLIALEDEMKTPSS-YRKNPFGIFNMGFTTIIIIYLFVGVIGYYKYG 219 (235)
Q Consensus 164 ~~~faf~g~~~l~~I~~~m~~p~~-~~~~~~~v~~~s~~~~~~~Y~~~g~~GY~afG 219 (235)
...|+|.|-......-+|+|||+| .+| ++..+...+.++|....+.-...-+
T Consensus 202 ~~~~af~G~e~~~~~a~E~knP~r~iPr----Ai~~~~~~~~~~y~l~~~~~~~~~~ 254 (474)
T TIGR03813 202 SIFLFYAGMEMNAVHVKDVDNPDKNYPI----AILIAALGTVLIFVLGTLAIAFIIP 254 (474)
T ss_pred HHHHHHhchhHhHHHHHhccCcccchhH----HHHHHHHHHHHHHHHHHHHHHhccC
Confidence 356899999999999999999974 444 7888999999999876554433333
No 52
>PRK10836 lysine transporter; Provisional
Probab=65.30 E-value=7.7 Score=37.36 Aligned_cols=53 Identities=17% Similarity=0.144 Sum_probs=40.8
Q ss_pred HHHHHHHHhccccchhhhhhhhcCCCCCCCCcchhhHHHHHHHHHHHHHHHhhhHh
Q psy16921 161 FMGTFLFASLGIGVLIALEDEMKTPSSYRKNPFGIFNMGFTTIIIIYLFVGVIGYY 216 (235)
Q Consensus 161 ~~G~~~faf~g~~~l~~I~~~m~~p~~~~~~~~~v~~~s~~~~~~~Y~~~g~~GY~ 216 (235)
......|+|.|-..+...-+|+|||+|-- ++++..++..+.++|+.....-..
T Consensus 210 ~~~~~~faf~G~e~~~~~a~E~knP~r~i---PrAi~~~~~~v~~~Yvl~~~~~~~ 262 (489)
T PRK10836 210 VAMIVGFSFQGTELIGIAAGESEDPAKNI---PRAVRQVFWRILLFYVFAILIISL 262 (489)
T ss_pred HHHHHHHHHccHHHHHHHHHHhcCHHHHH---HHHHHHHHHHHHHHHHHHHHHHhe
Confidence 34445699999999999999999997432 247778999999999987654433
No 53
>TIGR00796 livcs branched-chain amino acid uptake carrier. transmembrane helical spanners.
Probab=63.60 E-value=25 Score=33.42 Aligned_cols=56 Identities=13% Similarity=0.278 Sum_probs=43.8
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhCCCCcchhHHHHHHHHHHHHHHh
Q psy16921 1 MDSVNIIIVDFFIFWNHLGICCVYINFIADNFDQACHHFSPDTSLAKIHWELIITVVMIVLN 62 (235)
Q Consensus 1 m~~~g~~~v~~~i~i~~~G~ci~YlI~~~d~l~~v~~~~~~~~~~~~~~~~~i~~vv~ipLs 62 (235)
.|++|+.+..+.+.+.|+++|++.+...+|.+.++.+. .+.+.|.++..++-..++
T Consensus 265 ~G~~G~~ll~i~v~lACLtT~iGli~~~a~~f~~~~~k------~~y~~~v~~~~l~s~~ia 320 (378)
T TIGR00796 265 FGSLGSFLLGLIITLACLTTAVGLTTACSEYFHKLVPK------LSYKTWVIVFTLFSFIVA 320 (378)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC------CCHHHHHHHHHHHHHHHH
Confidence 48999999999999999999999999999999887542 345666665554444333
No 54
>PRK15049 L-asparagine permease; Provisional
Probab=63.47 E-value=6.5 Score=38.21 Aligned_cols=52 Identities=21% Similarity=0.198 Sum_probs=40.0
Q ss_pred HHHHHHHHHhccccchhhhhhhhcCCCC-CCCCcchhhHHHHHHHHHHHHHHHhhhH
Q psy16921 160 LFMGTFLFASLGIGVLIALEDEMKTPSS-YRKNPFGIFNMGFTTIIIIYLFVGVIGY 215 (235)
Q Consensus 160 ~~~G~~~faf~g~~~l~~I~~~m~~p~~-~~~~~~~v~~~s~~~~~~~Y~~~g~~GY 215 (235)
.++...+|+|.|-..+...-+|+|||+| .+| ++..++..+.++|+.....-.
T Consensus 224 ~~~~~~~faf~G~e~i~~~aeE~knP~r~iPr----Ai~~~~~~i~~~yi~~~~~~~ 276 (499)
T PRK15049 224 VLIQGVVFAFASIEMVGTAAGECKDPQTMVPK----AINSVIWRIGLFYVGSVVLLV 276 (499)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHhcChhhHHHH----HHHHHHHHHHHHHHHHHHHHh
Confidence 3445688999999999999999999975 333 677778888888887655433
No 55
>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V)). They function by a Na+ or H+ symport mechanism and display 12 putative transmembrane helical spanners.; GO: 0015658 branched-chain aliphatic amino acid transmembrane transporter activity, 0015803 branched-chain aliphatic amino acid transport, 0016021 integral to membrane
Probab=59.72 E-value=36 Score=33.01 Aligned_cols=56 Identities=18% Similarity=0.358 Sum_probs=45.6
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhCCCCcchhHHHHHHHHHHHHHHh
Q psy16921 1 MDSVNIIIVDFFIFWNHLGICCVYINFIADNFDQACHHFSPDTSLAKIHWELIITVVMIVLN 62 (235)
Q Consensus 1 m~~~g~~~v~~~i~i~~~G~ci~YlI~~~d~l~~v~~~~~~~~~~~~~~~~~i~~vv~ipLs 62 (235)
+|+.|..+..+.+.+.|+-+|++-+...+|-+++..+. .+.+.|..+..++-..++
T Consensus 271 ~G~~G~~ll~iiv~lACLTTaIGL~~a~a~yf~~~~~k------isY~~~v~i~~i~S~~ia 326 (427)
T PF05525_consen 271 FGSAGQILLGIIVFLACLTTAIGLISACAEYFSELFPK------ISYKVWVIIFTIFSFIIA 326 (427)
T ss_pred cChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc------cChHHHHHHHHHHHHHHH
Confidence 68999999999999999999999999999999998863 355677666555544444
No 56
>COG1457 CodB Purine-cytosine permease and related proteins [Nucleotide transport and metabolism]
Probab=59.46 E-value=31 Score=33.68 Aligned_cols=68 Identities=19% Similarity=0.118 Sum_probs=47.9
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhCCCCcchhHHHHHHHHHHHHHHhc--ccCcccccccchh
Q psy16921 2 DSVNIIIVDFFIFWNHLGICCVYINFIADNFDQACHHFSPDTSLAKIHWELIITVVMIVLNQ--VKNLHFLSPFSSI 76 (235)
Q Consensus 2 ~~~g~~~v~~~i~i~~~G~ci~YlI~~~d~l~~v~~~~~~~~~~~~~~~~~i~~vv~ipLs~--i~~l~~Ls~~S~~ 76 (235)
|.+|.++..+.+.+.++|-..+=.+..++. +. ...+.+...|.++.++++..... .|-+|.+...+..
T Consensus 92 G~~Gs~l~sll~~~~~iGW~~v~~~l~~~a---~~----~~~~~~~~~~ili~g~l~~l~~ifG~r~l~~l~~~a~~ 161 (442)
T COG1457 92 GVKGSILPSLLNGITLIGWFGVNVILSGIA---IG----SGTGLPVWAGILIIGVLMTLVTIFGYRALHKLERIAVP 161 (442)
T ss_pred cchhHHHHHHHHHHHHhhHHHHHHHHhccc---cc----cCCCCcHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 788999999999999999999999999988 11 12334555666666666655554 4555666555544
No 57
>COG3949 Uncharacterized membrane protein [Function unknown]
Probab=47.28 E-value=44 Score=31.69 Aligned_cols=61 Identities=15% Similarity=0.213 Sum_probs=44.0
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhCCCCcchhHHHH--HHHHHHHHHHhcccCcccc
Q psy16921 1 MDSVNIIIVDFFIFWNHLGICCVYINFIADNFDQACHHFSPDTSLAKIHWE--LIITVVMIVLNQVKNLHFL 70 (235)
Q Consensus 1 m~~~g~~~v~~~i~i~~~G~ci~YlI~~~d~l~~v~~~~~~~~~~~~~~~~--~i~~vv~ipLs~i~~l~~L 70 (235)
||++-..+.|..+....+++|++-+--.|..+++.++ -..|+ +++...+..+-++++.+.+
T Consensus 76 ~~~~~~ki~d~~iif~lf~~~vVM~AGags~~~e~~~---------lP~wiGali~i~~v~i~lfl~~vegi 138 (349)
T COG3949 76 SGPKFAKIIDIIIIFFLFSTAVVMLAGAGSLLEEMFG---------LPYWIGALIIILLVLILLFLGRVEGI 138 (349)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHhC---------ccHHHHHHHHHHHHHHHHHHhcccce
Confidence 5677778899999999999999988888888888763 23443 3444455556677766644
No 58
>PHA02680 ORF090 IMV phosphorylated membrane protein; Provisional
Probab=41.96 E-value=69 Score=24.58 Aligned_cols=61 Identities=15% Similarity=0.236 Sum_probs=41.9
Q ss_pred hHHHHHHHHHhccccchhhhhhhhcCCCCCCCCcchhhHHHHHHHHHHHHHHHhhhHhhcccCccc
Q psy16921 159 PLFMGTFLFASLGIGVLIALEDEMKTPSSYRKNPFGIFNMGFTTIIIIYLFVGVIGYYKYGQLVEG 224 (235)
Q Consensus 159 ~~~~G~~~faf~g~~~l~~I~~~m~~p~~~~~~~~~v~~~s~~~~~~~Y~~~g~~GY~afG~~v~~ 224 (235)
....|+.+.+-.|.....+..+.-.+|.++.. +++ ..+.++..+-+..|++.|-.|| ...+
T Consensus 14 vli~GIiLL~~ACIFAfidFSK~~s~~~~~~w---Ral-Sii~FIlG~vl~lGilifs~y~-~C~~ 74 (91)
T PHA02680 14 VLICGVLLLTAACVFAFVDFSKNTSNVTDYVW---RAL-SVTCFIVGAVLLLGLFVFSMYR-KCSG 74 (91)
T ss_pred HHHHHHHHHHHHHHHhhhhhhccCCCCcchhH---HHH-HHHHHHHHHHHHHHHHHHHHhc-ccCC
Confidence 35678888888888888887777667776664 233 3333555566788899999999 4443
No 59
>PRK15433 branched-chain amino acid transport system 2 carrier protein BrnQ; Provisional
Probab=40.24 E-value=92 Score=30.42 Aligned_cols=57 Identities=16% Similarity=0.128 Sum_probs=47.6
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhCCCCcchhHHHHHHHHHHHHHHhcc
Q psy16921 1 MDSVNIIIVDFFIFWNHLGICCVYINFIADNFDQACHHFSPDTSLAKIHWELIITVVMIVLNQV 64 (235)
Q Consensus 1 m~~~g~~~v~~~i~i~~~G~ci~YlI~~~d~l~~v~~~~~~~~~~~~~~~~~i~~vv~ipLs~i 64 (235)
.|++|+++..+.+...|+-+|++-+.-++|-+++..+ .+.+.|..+..++-.+++.+
T Consensus 275 ~G~~G~~ll~iiv~lACLTTaIGLi~a~a~~f~~~~~-------isY~~~v~i~~l~S~~lSn~ 331 (439)
T PRK15433 275 FGGGGSFLLAALIFIACLVTAVGLTCACAEFFAQYVP-------LSYRTLVFILGGFSMVVSNL 331 (439)
T ss_pred hCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-------CcHHHHHHHHHHHHHHHHHh
Confidence 4889999999999999999999999999999998763 35677777777777777665
No 60
>COG1114 BrnQ Branched-chain amino acid permeases [Amino acid transport and metabolism]
Probab=39.18 E-value=1.1e+02 Score=29.93 Aligned_cols=51 Identities=20% Similarity=0.356 Sum_probs=41.7
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhCCCCcchhHHHHHHHHHH
Q psy16921 1 MDSVNIIIVDFFIFWNHLGICCVYINFIADNFDQACHHFSPDTSLAKIHWELIITVV 57 (235)
Q Consensus 1 m~~~g~~~v~~~i~i~~~G~ci~YlI~~~d~l~~v~~~~~~~~~~~~~~~~~i~~vv 57 (235)
+|+.|+++...++.+.|+-+|++-+..++|.+.+..+.. +.+.|..+.+++
T Consensus 273 fG~~G~~lL~~iv~lACLTTaiGLi~a~aefF~~~~p~~------SY~~~v~if~i~ 323 (431)
T COG1114 273 FGSYGSILLGLIVFLACLTTAVGLIVACAEFFSKLVPKL------SYKTWVIIFTLI 323 (431)
T ss_pred hchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc------cHHHHHHHHHHH
Confidence 488999999999999999999999999999999988633 455565544443
No 61
>PF02468 PsbN: Photosystem II reaction centre N protein (psbN); InterPro: IPR003398 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbN found in PSII. PsbN may have a role in PSII stability, however its actual function unknown. PsbN does not appear to be essential for photoautotrophic growth or normal PSII function.; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009539 photosystem II reaction center, 0016020 membrane
Probab=37.02 E-value=38 Score=22.56 Aligned_cols=29 Identities=10% Similarity=0.139 Sum_probs=19.5
Q ss_pred hhHHHHHHHHHHHHHHHhhhHhhcccCcc
Q psy16921 195 IFNMGFTTIIIIYLFVGVIGYYKYGQLVE 223 (235)
Q Consensus 195 v~~~s~~~~~~~Y~~~g~~GY~afG~~v~ 223 (235)
+...++.+.+++-...|.--|.+||+..+
T Consensus 4 a~~~~i~i~~~lv~~Tgy~iYtaFGppSk 32 (43)
T PF02468_consen 4 ATVLAIFISCLLVSITGYAIYTAFGPPSK 32 (43)
T ss_pred eeeHHHHHHHHHHHHHhhhhhheeCCCcc
Confidence 44456666666666777777888997644
No 62
>PRK11375 allantoin permease; Provisional
Probab=34.70 E-value=1.5e+02 Score=28.84 Aligned_cols=39 Identities=0% Similarity=-0.293 Sum_probs=27.6
Q ss_pred CchhhHHHHHHHH-HHHHHHHHHHHHHHHHhHHHHHhhhC
Q psy16921 2 DSVNIIIVDFFIF-WNHLGICCVYINFIADNFDQACHHFS 40 (235)
Q Consensus 2 ~~~g~~~v~~~i~-i~~~G~ci~YlI~~~d~l~~v~~~~~ 40 (235)
|.+|.++..+... +..+|-.-+=..+.|+.+..+++...
T Consensus 100 G~~Gs~l~~~~rai~~~igW~~vqt~~~g~al~~~l~~i~ 139 (484)
T PRK11375 100 GVRGALFPGLLRGGIAAIMWFGLQCYAGSLALLILIGKIW 139 (484)
T ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 5667677777764 46667666667778888888876654
No 63
>KOG1289|consensus
Probab=32.14 E-value=1.8e+02 Score=29.32 Aligned_cols=62 Identities=13% Similarity=-0.009 Sum_probs=34.2
Q ss_pred chhHHHHHHHHHhccccchhhhhhhhcCCCCCCCCcchhhHHHHHHHHHHHHHHHhhhHhhcccC
Q psy16921 157 EVPLFMGTFLFASLGIGVLIALEDEMKTPSSYRKNPFGIFNMGFTTIIIIYLFVGVIGYYKYGQL 221 (235)
Q Consensus 157 ~~~~~~G~~~faf~g~~~l~~I~~~m~~p~~~~~~~~~v~~~s~~~~~~~Y~~~g~~GY~afG~~ 221 (235)
.+...+-..++...|-.....+-+|-||++|-.. |+ +..+..+..++=..+-+.=.+.-++|
T Consensus 253 afil~f~~~~wt~sGyDa~~H~aEE~~nAsk~aP--rg-Ii~s~~i~~i~gw~~~I~i~~~i~~D 314 (550)
T KOG1289|consen 253 AFILGFFNPAWTMSGYDAAAHMAEETKNASKAAP--RG-IISSIAIGFILGWIIIIGIAYTIPDD 314 (550)
T ss_pred HHHHhhccceeEEeccCchHHHHHHhcchhhhcc--HH-HHHHHHHHHHHHHHHHHHHHHhccch
Confidence 3344444455667777788899999999986554 33 33444444333333333223344543
No 64
>PF02133 Transp_cyt_pur: Permease for cytosine/purines, uracil, thiamine, allantoin; InterPro: IPR001248 The Nucleobase Cation Symporter-1 (NCS1) family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines. Members of this family possess twelve putative transmembrane a-helical spanners (TMSs). At least some of them have been shown to function in uptake by substrate:H+ symport mechanism.; GO: 0015205 nucleobase transmembrane transporter activity, 0015851 nucleobase transport, 0016020 membrane; PDB: 2JLN_A 2JLO_A.
Probab=27.25 E-value=36 Score=32.03 Aligned_cols=40 Identities=5% Similarity=-0.076 Sum_probs=35.1
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhC
Q psy16921 1 MDSVNIIIVDFFIFWNHLGICCVYINFIADNFDQACHHFS 40 (235)
Q Consensus 1 m~~~g~~~v~~~i~i~~~G~ci~YlI~~~d~l~~v~~~~~ 40 (235)
.|.+|..+..+...+.+.|-...=..+.++.+.++.+...
T Consensus 81 FG~~Gs~l~~~l~~i~~igW~av~~~~~g~al~~~~~~~~ 120 (440)
T PF02133_consen 81 FGYRGSKLPSLLRAISAIGWFAVNTWLGGQALAALLGIIF 120 (440)
T ss_dssp S-TTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred cCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Confidence 4788999999999999999999999999999999998764
No 65
>PRK13183 psbN photosystem II reaction center protein N; Provisional
Probab=26.93 E-value=66 Score=21.77 Aligned_cols=29 Identities=17% Similarity=0.352 Sum_probs=18.1
Q ss_pred hhHHHHHHHHHHHHHHHhhhHhhcccCcc
Q psy16921 195 IFNMGFTTIIIIYLFVGVIGYYKYGQLVE 223 (235)
Q Consensus 195 v~~~s~~~~~~~Y~~~g~~GY~afG~~v~ 223 (235)
+..+++.+.+++-...|.--|-+||+..+
T Consensus 7 A~~~~i~i~~lL~~~TgyaiYtaFGppSk 35 (46)
T PRK13183 7 ALSLAITILAILLALTGFGIYTAFGPPSK 35 (46)
T ss_pred hHHHHHHHHHHHHHHhhheeeeccCCccc
Confidence 45555555666666666666778887643
No 66
>PRK11017 codB cytosine permease; Provisional
Probab=26.66 E-value=2.9e+02 Score=26.05 Aligned_cols=57 Identities=12% Similarity=0.082 Sum_probs=34.7
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhCCCCcchhHHHHHHHHHHHHHHhcc
Q psy16921 1 MDSVNIIIVDFFIFWNHLGICCVYINFIADNFDQACHHFSPDTSLAKIHWELIITVVMIVLNQV 64 (235)
Q Consensus 1 m~~~g~~~v~~~i~i~~~G~ci~YlI~~~d~l~~v~~~~~~~~~~~~~~~~~i~~vv~ipLs~i 64 (235)
.|.+|..+..+...+..+|-..+=....++.++++.+ .+...+.++..+++.+.+.+
T Consensus 81 FG~~Gs~l~~~~~~i~~igW~av~~~~~~~~l~~~~~-------~~~~~~~~i~~~l~~~~~~~ 137 (404)
T PRK11017 81 FGEKGSWLPSLLLGFTQVGWFGVGVAMFAIPVVKATG-------LDINLLIVLSGLLMTVTAYF 137 (404)
T ss_pred hchhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhC-------CCHHHHHHHHHHHHHHHHHH
Confidence 3777888888887777777665555556666655432 12233555555666666654
No 67
>CHL00020 psbN photosystem II protein N
Probab=26.09 E-value=56 Score=21.78 Aligned_cols=29 Identities=17% Similarity=0.180 Sum_probs=18.2
Q ss_pred hhHHHHHHHHHHHHHHHhhhHhhcccCcc
Q psy16921 195 IFNMGFTTIIIIYLFVGVIGYYKYGQLVE 223 (235)
Q Consensus 195 v~~~s~~~~~~~Y~~~g~~GY~afG~~v~ 223 (235)
+..+++.+.+++....|.--|-+||+..+
T Consensus 4 A~~~~i~i~~ll~~~Tgy~iYtaFGppSk 32 (43)
T CHL00020 4 ATLVAIFISGLLVSFTGYALYTAFGQPSK 32 (43)
T ss_pred hhhHHHHHHHHHHHhhheeeeeccCCchh
Confidence 44555556666666666666778887643
No 68
>PF04835 Pox_A9: A9 protein conserved region; InterPro: IPR006920 This entry represents a family of Chordopoxvirus A9 proteins. Chordopoxvirus belongs to the family Poxviridae and is the cause of vertebrate infections [].
Probab=23.65 E-value=1.5e+02 Score=20.62 Aligned_cols=28 Identities=18% Similarity=0.241 Sum_probs=20.6
Q ss_pred hHHHHHHHHHHHHHHHhhhHhhcccCcc
Q psy16921 196 FNMGFTTIIIIYLFVGVIGYYKYGQLVE 223 (235)
Q Consensus 196 ~~~s~~~~~~~Y~~~g~~GY~afG~~v~ 223 (235)
+.+=..+.+++|+..|+.=+..+-++.+
T Consensus 25 Viik~vismimylilGi~L~yis~~~~~ 52 (54)
T PF04835_consen 25 VIIKSVISMIMYLILGIALIYISSNDDK 52 (54)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhccCccc
Confidence 4455567889999999987777666554
No 69
>PF11286 DUF3087: Protein of unknown function (DUF3087); InterPro: IPR021438 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=21.10 E-value=50 Score=28.12 Aligned_cols=47 Identities=17% Similarity=0.232 Sum_probs=31.3
Q ss_pred CCCCCCCCcchhhHHHHHHHHHHHHHHHhhhHhhcccCccccccccC
Q psy16921 184 TPSSYRKNPFGIFNMGFTTIIIIYLFVGVIGYYKYGQLVEGSITLNI 230 (235)
Q Consensus 184 ~p~~~~~~~~~v~~~s~~~~~~~Y~~~g~~GY~afG~~v~~~Il~nl 230 (235)
||+.||+..+.+.......-.++-+.+|-.-...||+...+|.-.|+
T Consensus 7 dk~~YRk~~n~v~~~~v~~lai~sl~~s~llI~lFg~~~~~nf~~Nl 53 (165)
T PF11286_consen 7 DKERYRKHLNRVIVACVASLAILSLAFSQLLIALFGGESGGNFHWNL 53 (165)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCceeeeH
Confidence 67778876455554444455556667777777889987777766664
Done!