Query psy16921
Match_columns 235
No_of_seqs 102 out of 1123
Neff 5.9
Searched_HMMs 29240
Date Fri Aug 16 17:07:59 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16921.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/16921hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3l1l_A Arginine/agmatine antip 96.5 0.0016 5.3E-08 59.1 4.1 63 155-221 190-253 (445)
2 4djk_A Probable glutamate/gamm 94.7 0.099 3.4E-06 48.1 8.4 59 160-221 205-263 (511)
3 3gia_A Uncharacterized protein 94.4 0.013 4.4E-07 53.1 1.7 60 156-219 188-248 (444)
4 2jln_A MHP1; hydantoin, transp 76.2 2.5 8.6E-05 39.7 4.6 73 1-76 98-170 (501)
5 3bo0_B Preprotein translocase 9.1 3.9E+02 0.013 17.4 3.9 43 177-221 12-57 (65)
6 4f4l_A ION transport protein; 5.3 4.1E+02 0.014 19.2 2.7 29 195-224 6-34 (112)
7 2htg_A NHE-1, NHE1 isoform of 4.6 1.8E+02 0.0061 16.7 0.1 8 77-84 13-20 (28)
8 4dxw_A Navrh, ION transport pr 4.4 7.3E+02 0.025 19.6 3.9 25 200-224 137-161 (229)
9 3mp7_B Preprotein translocase 4.2 8.7E+02 0.03 16.1 3.5 18 200-217 34-51 (61)
10 3rvy_A ION transport protein; 4.1 6.5E+02 0.022 20.7 3.4 26 199-224 151-176 (285)
No 1
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=96.55 E-value=0.0016 Score=59.11 Aligned_cols=63 Identities=10% Similarity=0.048 Sum_probs=50.0
Q ss_pred ccchhHHHHHHHHHhccccchhhhhhhhcCCCC-CCCCcchhhHHHHHHHHHHHHHHHhhhHhhcccC
Q psy16921 155 LYEVPLFMGTFLFASLGIGVLIALEDEMKTPSS-YRKNPFGIFNMGFTTIIIIYLFVGVIGYYKYGQL 221 (235)
Q Consensus 155 ~~~~~~~~G~~~faf~g~~~l~~I~~~m~~p~~-~~~~~~~v~~~s~~~~~~~Y~~~g~~GY~afG~~ 221 (235)
+..+..++....|+|.|........+|+|||+| .+| ....+...++++|+...+......+.+
T Consensus 190 ~~~~~~~~~~~~~af~G~e~~~~~~~e~k~p~r~ip~----a~~~~~~~~~~~y~~~~~~~~~~~~~~ 253 (445)
T 3l1l_A 190 FGAIQSTLNVTLWSFIGVESASVAAGVVKNPKRNVPI----ATIGGVLIAAVCYVLSTTAIMGMIPNA 253 (445)
T ss_dssp ---HHHHHHHHHHTTTTTTHHHHGGGGBSSHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHSCTT
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHhcCccccccH----HHHHHHHHHHHHHHHHHHHHHhcCCHH
Confidence 456677888899999999999999999999953 444 788999999999999888766666543
No 2
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A
Probab=94.65 E-value=0.099 Score=48.08 Aligned_cols=59 Identities=12% Similarity=0.064 Sum_probs=47.8
Q ss_pred HHHHHHHHHhccccchhhhhhhhcCCCCCCCCcchhhHHHHHHHHHHHHHHHhhhHhhcccC
Q psy16921 160 LFMGTFLFASLGIGVLIALEDEMKTPSSYRKNPFGIFNMGFTTIIIIYLFVGVIGYYKYGQL 221 (235)
Q Consensus 160 ~~~G~~~faf~g~~~l~~I~~~m~~p~~~~~~~~~v~~~s~~~~~~~Y~~~g~~GY~afG~~ 221 (235)
.++....|+|.|........+|+|||+|-- ++++..++..++++|+...+.-....+++
T Consensus 205 ~~~~~~~~a~~G~e~~~~~a~E~k~P~k~i---p~ai~~~~~~~~~~y~~~~~~~~~~~~~~ 263 (511)
T 4djk_A 205 VVFVAFILSYMGVEASATHVNEMSNPGRDY---PLAMLLLMVAAICLSSVGGLSIAMVIPGN 263 (511)
T ss_dssp TTHHHHHHHHTTGGGGTGGGSSSSCCTTTH---HHHHHHHHHHHHHHHHHHHHHHHTTSCTT
T ss_pred HHHHHHHHHHhhHHHHHHHHHhccCcccch---hHHHHHHHHHHHHHHHHHHHHHHeecCHh
Confidence 456678899999999999999999997532 23788999999999999888766666654
No 3
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C
Probab=94.41 E-value=0.013 Score=53.12 Aligned_cols=60 Identities=12% Similarity=0.308 Sum_probs=47.9
Q ss_pred cchhHHHHHHHHHhccccchhhhhhhhcCCCC-CCCCcchhhHHHHHHHHHHHHHHHhhhHhhcc
Q psy16921 156 YEVPLFMGTFLFASLGIGVLIALEDEMKTPSS-YRKNPFGIFNMGFTTIIIIYLFVGVIGYYKYG 219 (235)
Q Consensus 156 ~~~~~~~G~~~faf~g~~~l~~I~~~m~~p~~-~~~~~~~v~~~s~~~~~~~Y~~~g~~GY~afG 219 (235)
..+..++....|+|.|........+|+|||+| .+| .+..+...+.++|....+......+
T Consensus 188 ~~~~~~~~~~~~a~~G~e~~~~~~~e~k~P~r~ip~----ai~~~~~~~~~~y~~~~~~~~~~~~ 248 (444)
T 3gia_A 188 SGMIFASAIFFLSYMGFGVITNASEHIENPKKNVPR----AIFISILIVMFVYVGVAISAIGNLP 248 (444)
T ss_dssp HHHHHHHHHGGGGGTHHHHHHTTGGGBSSHHHHHHH----HHHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHccCcccchhH----HHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 45566777778999999999999999999974 444 6889999999999988776554444
No 4
>2jln_A MHP1; hydantoin, transporter, membrane protein, nucleobase-cation-symport-1 family; 2.85A {Microbacterium liquefaciens} PDB: 2jlo_A* 2x79_A
Probab=76.20 E-value=2.5 Score=39.67 Aligned_cols=73 Identities=12% Similarity=0.018 Sum_probs=50.2
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhCCCCcchhHHHHHHHHHHHHHHhcccCcccccccchh
Q psy16921 1 MDSVNIIIVDFFIFWNHLGICCVYINFIADNFDQACHHFSPDTSLAKIHWELIITVVMIVLNQVKNLHFLSPFSSI 76 (235)
Q Consensus 1 m~~~g~~~v~~~i~i~~~G~ci~YlI~~~d~l~~v~~~~~~~~~~~~~~~~~i~~vv~ipLs~i~~l~~Ls~~S~~ 76 (235)
.|.+|..+..+...+.++|-..+=....|+.+.++++...... +.....++..++.++.... .++.+.++...
T Consensus 98 FG~~Gs~i~~ll~~i~~igw~~v~~~~gg~al~~~~~~~~g~~--~~~v~~~i~~~l~~~~~~~-G~~~i~~~~~~ 170 (501)
T 2jln_A 98 FGIRGSLIPITLKALLSLFWFGFQTWLGALALDEITRLLTGFT--NLPLWIVIFGAIQVVTTFY-GITFIRWMNVF 170 (501)
T ss_dssp SCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc--hHHHHHHHHHHHHHHHHHh-CHHHHHHHHHH
Confidence 4788999999999999999998888899999999876542111 1234455566666777643 34555444443
No 5
>3bo0_B Preprotein translocase SECE subunit; ribosome-SECY complex, protein translocation; 9.60A {Escherichia coli} PDB: 3bo1_B 3kcr_B
Probab=9.14 E-value=3.9e+02 Score=17.43 Aligned_cols=43 Identities=14% Similarity=0.157 Sum_probs=23.9
Q ss_pred hhhhhhc---CCCCCCCCcchhhHHHHHHHHHHHHHHHhhhHhhcccC
Q psy16921 177 ALEDEMK---TPSSYRKNPFGIFNMGFTTIIIIYLFVGVIGYYKYGQL 221 (235)
Q Consensus 177 ~I~~~m~---~p~~~~~~~~~v~~~s~~~~~~~Y~~~g~~GY~afG~~ 221 (235)
+..+||+ -|.+.+.+ +=+......+.+....+|++||..++-+
T Consensus 12 ~~~~E~kkV~wptrKp~~--~e~~~v~~~t~vv~~~v~~i~~~i~lid 57 (65)
T 3bo0_B 12 EARTEVRKVIWPTRKPTK--DEYLAVAKVTALGISLLGIIGYIIHVPA 57 (65)
T ss_dssp HHHHHHHHHSCTTTTTCT--THHHHHHHHHHHHHHHHHHHHHHHTTTT
T ss_pred HHHHHHhheeccCCCCCH--HHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 4566665 35443332 1233333456666777888888776543
No 6
>4f4l_A ION transport protein; alpha helical membrane protein, voltage-gated sodium channel membrane, metal transport; 3.49A {Magnetococcus marinus}
Probab=5.25 E-value=4.1e+02 Score=19.25 Aligned_cols=29 Identities=10% Similarity=0.290 Sum_probs=18.8
Q ss_pred hhHHHHHHHHHHHHHHHhhhHhhcccCccc
Q psy16921 195 IFNMGFTTIIIIYLFVGVIGYYKYGQLVEG 224 (235)
Q Consensus 195 v~~~s~~~~~~~Y~~~g~~GY~afG~~v~~ 224 (235)
+.++.. ...+++..+|++|.-.||+..++
T Consensus 6 ~~nv~~-ll~l~~~ifAi~G~~lFg~~~~~ 34 (112)
T 4f4l_A 6 VGSVAA-LLTVVFYIAAVMATNLYGATFPE 34 (112)
T ss_dssp --CHHH-HHHHHHHHHHHHHHHHHTTTCHH
T ss_pred HHHHHH-HHHHHHHHHHHHHHHHHCCCccc
Confidence 444444 34455567899999999987654
No 7
>2htg_A NHE-1, NHE1 isoform of Na+/H+ exchanger 1, solute; membrane protein, transmembrane segment, helix-KINK-helix; NMR {Synthetic}
Probab=4.63 E-value=1.8e+02 Score=16.73 Aligned_cols=8 Identities=50% Similarity=0.655 Sum_probs=6.3
Q ss_pred hhhhhhhc
Q psy16921 77 ESLINQRS 84 (235)
Q Consensus 77 ~~~~~~~~ 84 (235)
|||+||-.
T Consensus 13 ESllNDav 20 (28)
T 2htg_A 13 ESLLNDAV 20 (28)
T ss_dssp TTTTTTTT
T ss_pred eeeecccE
Confidence 78888865
No 8
>4dxw_A Navrh, ION transport protein; tetrameric, voltage-gated sodium channel, sodium selective, gated ION channel; HET: BNG PX4; 3.05A {Alpha proteobacterium HIMB114}
Probab=4.40 E-value=7.3e+02 Score=19.55 Aligned_cols=25 Identities=16% Similarity=0.219 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHhhhHhhcccCccc
Q psy16921 200 FTTIIIIYLFVGVIGYYKYGQLVEG 224 (235)
Q Consensus 200 ~~~~~~~Y~~~g~~GY~afG~~v~~ 224 (235)
.....+++..+|++|+..||+..++
T Consensus 137 ~~~l~~~~~ifa~~g~~lf~~~~~~ 161 (229)
T 4dxw_A 137 SLLLFIILYIYATMGAILFGNDDPS 161 (229)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTTSCT
T ss_pred HHHHHHHHHHHHHHHHHHhccCCcc
Confidence 3455666667899999999987543
No 9
>3mp7_B Preprotein translocase subunit SECE; protein transport, membrane protein complex, preprotein TRAN membrane insertion,; 2.90A {Pyrococcus furiosus}
Probab=4.24 E-value=8.7e+02 Score=16.06 Aligned_cols=18 Identities=17% Similarity=0.266 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHhhhHhh
Q psy16921 200 FTTIIIIYLFVGVIGYYK 217 (235)
Q Consensus 200 ~~~~~~~Y~~~g~~GY~a 217 (235)
.-.+.+-...+|++||..
T Consensus 34 ak~~~iG~~i~G~iGf~I 51 (61)
T 3mp7_B 34 AKITGLGIILIGLIGMLI 51 (61)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 335566667788888864
No 10
>3rvy_A ION transport protein; tetrameric ION channel, voltage-gated sodium-selective ION C membrane, metal transport; HET: PX4; 2.70A {Arcobacter butzleri} PDB: 3rvz_A* 4ekw_A* 3rw0_A*
Probab=4.11 E-value=6.5e+02 Score=20.67 Aligned_cols=26 Identities=4% Similarity=0.255 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHhhhHhhcccCccc
Q psy16921 199 GFTTIIIIYLFVGVIGYYKYGQLVEG 224 (235)
Q Consensus 199 s~~~~~~~Y~~~g~~GY~afG~~v~~ 224 (235)
......+++..+|++|+..||+..++
T Consensus 151 ~~~~~~~~~~~fa~~g~~~f~~~~~~ 176 (285)
T 3rvy_A 151 VIALMTLFFYIFAIMATQLFGERFPE 176 (285)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTCHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCccccc
Confidence 34466677778899999999976554
Done!