Query psy16921
Match_columns 235
No_of_seqs 102 out of 1123
Neff 5.9
Searched_HMMs 13730
Date Fri Aug 16 17:08:05 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16921.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/16921hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1rh5b_ f.23.28.1 (B:) Preprot 2.1 5.4E+02 0.039 15.4 2.2 17 202-218 29-45 (56)
2 d1j4na_ f.19.1.1 (A:) Aquapori 1.7 1.3E+03 0.097 16.5 5.0 25 159-183 16-40 (249)
3 d1q90b_ f.21.1.2 (B:) Cytochro 1.6 1E+03 0.076 17.4 3.7 26 195-220 113-138 (212)
4 d1v54d_ f.23.1.1 (D:) Mitochon 1.6 8.5E+02 0.062 17.0 2.9 40 178-220 64-103 (144)
5 d1x9ba_ a.10.2.1 (A:) Hypothet 1.5 3.4E+02 0.025 16.0 0.3 13 73-85 6-18 (53)
6 d1fx8a_ f.19.1.1 (A:) Glycerol 1.3 8.6E+02 0.063 17.8 2.5 16 160-175 9-24 (254)
7 d2iuba2 f.17.3.1 (A:286-349) M 1.3 8.4E+02 0.061 13.9 2.0 15 51-65 9-23 (64)
8 d2i5nh2 f.23.10.1 (H:1-36) Pho 1.3 9.1E+02 0.067 12.6 2.0 12 48-59 19-30 (36)
9 d1kqfb2 f.23.22.1 (B:246-290) 1.3 1E+03 0.076 13.3 3.3 23 202-224 18-40 (45)
10 d1mmca_ g.3.1.2 (A:) Antimicro 1.0 5.4E+02 0.039 13.2 0.3 10 90-99 15-24 (30)
No 1
>d1rh5b_ f.23.28.1 (B:) Preprotein translocase SecE subunit {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=2.15 E-value=5.4e+02 Score=15.40 Aligned_cols=17 Identities=24% Similarity=0.413 Sum_probs=11.8
Q ss_pred HHHHHHHHHHhhhHhhc
Q psy16921 202 TIIIIYLFVGVIGYYKY 218 (235)
Q Consensus 202 ~~~~~Y~~~g~~GY~af 218 (235)
.+.+=.+.+|++||..+
T Consensus 29 v~~iG~~i~G~IGf~I~ 45 (56)
T d1rh5b_ 29 VTALGISLLGIIGYIIH 45 (56)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44555677888888754
No 2
>d1j4na_ f.19.1.1 (A:) Aquaporin-1 {Cow (Bos taurus) [TaxId: 9913]}
Probab=1.73 E-value=1.3e+03 Score=16.46 Aligned_cols=25 Identities=24% Similarity=0.471 Sum_probs=16.9
Q ss_pred hHHHHHHHHHhccccchhhhhhhhc
Q psy16921 159 PLFMGTFLFASLGIGVLIALEDEMK 183 (235)
Q Consensus 159 ~~~~G~~~faf~g~~~l~~I~~~m~ 183 (235)
--++|++++.|.+.+........+.
T Consensus 16 aEf~gTfllvf~~~gs~~~~~~~~~ 40 (249)
T d1j4na_ 16 AEFLAMILFIFISIGSALGFHYPIK 40 (249)
T ss_dssp HHHHHHHHHHHHHHHHHHGGGCCCS
T ss_pred HHHHHHHHHHHHHHHHHHhhhcccc
Confidence 3588999998887776555444433
No 3
>d1q90b_ f.21.1.2 (B:) Cytochrome b6 subunit of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=1.61 E-value=1e+03 Score=17.36 Aligned_cols=26 Identities=15% Similarity=0.082 Sum_probs=17.5
Q ss_pred hhHHHHHHHHHHHHHHHhhhHhhccc
Q psy16921 195 IFNMGFTTIIIIYLFVGVIGYYKYGQ 220 (235)
Q Consensus 195 v~~~s~~~~~~~Y~~~g~~GY~afG~ 220 (235)
..++.=.....+-+..|+.||.-=.|
T Consensus 113 ~~W~~Gv~l~~l~m~~aftGY~Lpw~ 138 (212)
T d1q90b_ 113 LTWVTGVIMAVCTVSFGVTGYSLPWD 138 (212)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCB
T ss_pred ceehHhHHHHHHHHHHHHhhhhcchh
Confidence 44555556677778889999975433
No 4
>d1v54d_ f.23.1.1 (D:) Mitochondrial cytochrome c oxidase subunit IV {Cow (Bos taurus) [TaxId: 9913]}
Probab=1.59 E-value=8.5e+02 Score=17.03 Aligned_cols=40 Identities=20% Similarity=0.136 Sum_probs=24.1
Q ss_pred hhhhhcCCCCCCCCcchhhHHHHHHHHHHHHHHHhhhHhhccc
Q psy16921 178 LEDEMKTPSSYRKNPFGIFNMGFTTIIIIYLFVGVIGYYKYGQ 220 (235)
Q Consensus 178 I~~~m~~p~~~~~~~~~v~~~s~~~~~~~Y~~~g~~GY~afG~ 220 (235)
-..+|+.|...-+ .++..+++.+.+-..++...-..+|++
T Consensus 64 t~ae~~~p~gewK---~v~g~~~~~i~~s~~i~~~~r~~v~p~ 103 (144)
T d1v54d_ 64 SFAEMNRSTNEWK---TVVGAAMFFIGFTALLLIWEKHYVYGP 103 (144)
T ss_dssp CHHHHTCCCSHHH---HHHHHHHHHHHHHHHHHHHHHHHTCCC
T ss_pred ccccccCCCCchh---HHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 4567887765543 366666555555555555555566765
No 5
>d1x9ba_ a.10.2.1 (A:) Hypothetical membrane protein Ta0354, soluble domain {Thermoplasma acidophilum [TaxId: 2303]}
Probab=1.53 E-value=3.4e+02 Score=16.01 Aligned_cols=13 Identities=46% Similarity=0.516 Sum_probs=7.7
Q ss_pred cchhhhhhhhhcc
Q psy16921 73 FSSIESLINQRSK 85 (235)
Q Consensus 73 ~S~~~~~~~~~~~ 85 (235)
-+-+||+||.-||
T Consensus 6 r~kFEs~INS~SK 18 (53)
T d1x9ba_ 6 RAKFESMINSPSK 18 (53)
T ss_dssp HHHHHHHHHSCCH
T ss_pred HHHHHHHHcCchH
Confidence 3445677776664
No 6
>d1fx8a_ f.19.1.1 (A:) Glycerol uptake facilitator protein GlpF {Escherichia coli [TaxId: 562]}
Probab=1.30 E-value=8.6e+02 Score=17.80 Aligned_cols=16 Identities=38% Similarity=0.696 Sum_probs=10.1
Q ss_pred HHHHHHHHHhccccch
Q psy16921 160 LFMGTFLFASLGIGVL 175 (235)
Q Consensus 160 ~~~G~~~faf~g~~~l 175 (235)
-++||+.+-|.+.+..
T Consensus 9 EflGT~~lvf~g~g~~ 24 (254)
T d1fx8a_ 9 EFLGTGLLIFFGVGCV 24 (254)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4677777777655443
No 7
>d2iuba2 f.17.3.1 (A:286-349) Magnesium transport protein CorA {Thermotoga maritima [TaxId: 2336]}
Probab=1.28 E-value=8.4e+02 Score=13.92 Aligned_cols=15 Identities=20% Similarity=0.324 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHhccc
Q psy16921 51 ELIITVVMIVLNQVK 65 (235)
Q Consensus 51 ~~i~~vv~ipLs~i~ 65 (235)
+-+.+++.+|++++-
T Consensus 9 lT~it~iflP~t~i~ 23 (64)
T d2iuba2 9 LTIIATIFMPLTFIA 23 (64)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHH
Confidence 345677888988885
No 8
>d2i5nh2 f.23.10.1 (H:1-36) Photosystem II reaction centre subunit H, transmembrane region {Rhodopseudomonas viridis [TaxId: 1079]}
Probab=1.26 E-value=9.1e+02 Score=12.63 Aligned_cols=12 Identities=42% Similarity=0.852 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHH
Q psy16921 48 IHWELIITVVMI 59 (235)
Q Consensus 48 ~~~~~i~~vv~i 59 (235)
..|+.+.+++++
T Consensus 19 aqwlviwtvvll 30 (36)
T d2i5nh2 19 AQWLVIWTVVLL 30 (36)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 456677776654
No 9
>d1kqfb2 f.23.22.1 (B:246-290) Iron-sulfur subunit of formate dehydrogenase N, transmembrane anchor {Escherichia coli [TaxId: 562]}
Probab=1.26 E-value=1e+03 Score=13.32 Aligned_cols=23 Identities=17% Similarity=0.008 Sum_probs=15.3
Q ss_pred HHHHHHHHHHhhhHhhcccCccc
Q psy16921 202 TIIIIYLFVGVIGYYKYGQLVEG 224 (235)
Q Consensus 202 ~~~~~Y~~~g~~GY~afG~~v~~ 224 (235)
..+..-...|++=|...|.|..+
T Consensus 18 ~~~~~~~~~~~fHYv~vGPn~v~ 40 (45)
T d1kqfb2 18 AGFIATFAGLIFHYIGIGPNKEV 40 (45)
T ss_dssp HHHHHHHHHHHHHHHHHCCBCSC
T ss_pred HHHHHHHHHHHHhhheeCCCccc
Confidence 34444456677888888988543
No 10
>d1mmca_ g.3.1.2 (A:) Antimicrobial peptide 2, AC-AMP2 {Tassel (Amaranthus caudatus) [TaxId: 3567]}
Probab=1.05 E-value=5.4e+02 Score=13.16 Aligned_cols=10 Identities=30% Similarity=0.328 Sum_probs=5.7
Q ss_pred cccccccccc
Q psy16921 90 VHSFSNLIKG 99 (235)
Q Consensus 90 ~~~~~~~~~~ 99 (235)
-.-|||+-+|
T Consensus 15 csqfgycg~g 24 (30)
T d1mmca_ 15 CSQFGYCGKG 24 (30)
T ss_dssp ECTTSCEESS
T ss_pred hhhcCcccCC
Confidence 3456776655
Done!