RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy16921
(235 letters)
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 48.1 bits (114), Expect = 1e-06
Identities = 29/207 (14%), Positives = 58/207 (28%), Gaps = 87/207 (42%)
Query: 24 YINFIADNFDQA-CHHFSPDTSLAKIHWELIITVVMIVLNQVKNLHFLSPFSSIESLINQ 82
++ +++ + + F V+ + L F + + L
Sbjct: 64 FLGYVSSLVEPSKVGQFDQ--------------VLNLCLT-----EFENCY-----L--- 96
Query: 83 RSKAGTKVHSF-SNLIKGVGSPSFNSESLIKRFRLLKCNILLTIGLGMVCYYIFRDGLDQ 141
G +H+ + L N +L+K L+K Y R +
Sbjct: 97 ---EGNDIHALAAKL------LQENDTTLVKTKELIKN------------YITARIMAKR 135
Query: 142 PILRP-----------GDVEL---FG-------------KLYEV-PLFMGTFLFASLGIG 173
P + G+ +L FG LY+ + +G + S
Sbjct: 136 PFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAET- 194
Query: 174 VLIALEDEMKTPSSYRKNPFGIFNMGF 200
L + ++T K +F G
Sbjct: 195 ----LSELIRTTLDAEK----VFTQGL 213
Score = 33.9 bits (77), Expect = 0.054
Identities = 36/182 (19%), Positives = 57/182 (31%), Gaps = 55/182 (30%)
Query: 24 YINF-IADN-FDQACHHFSPDTSLAKIHWELIITVVMIVLNQVKNL--HFLSPFSSIESL 79
Y A + +++A +HF +++ IV+N NL HF
Sbjct: 1636 YKTSKAAQDVWNRADNHFKDT---------YGFSILDIVINNPVNLTIHFGGEKG----- 1681
Query: 80 INQRSKAGTKVHSFSNLIKGVGSPSFNSESLIKRFRLLKCNILLTIGLGMVCYYIFR--- 136
+R + F ++ G +E + K N T Y FR
Sbjct: 1682 --KRIRENYSAMIFETIVDG----KLKTEKIFKEI-----NEHSTS-------YTFRSEK 1723
Query: 137 DGLD-----QPILRPGDVELFGKLYEVPLFMGTFLFA--SLG--------IGVLIALEDE 181
L QP L + F L L FA SLG V+ ++E
Sbjct: 1724 GLLSATQFTQPALTLMEKAAFEDLKSKGLIPADATFAGHSLGEYAALASLADVM-SIESL 1782
Query: 182 MK 183
++
Sbjct: 1783 VE 1784
Score = 33.5 bits (76), Expect = 0.062
Identities = 39/217 (17%), Positives = 60/217 (27%), Gaps = 94/217 (43%)
Query: 12 FIFWNHLGICCVYINFIADNFDQACHHFSPDTSLAKIHWELIITVV-------------M 58
+F+ +G+ C+ P+TSL +++ M
Sbjct: 302 VLFF--IGV--------------RCYEAYPNTSLP-------PSILEDSLENNEGVPSPM 338
Query: 59 IVLNQVKNLHFLSPFSSIESLI---NQRSKAGTKVH-----SFSNLIKGV-GSPSFNS-E 108
+ + NL ++ + N AG +V NL+ V G P S
Sbjct: 339 LS---ISNL----TQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLV--VSGPPQ--SLY 387
Query: 109 SLIKRFRLLKCNILLTIGLGMVCYYIFRDGLDQ---PILRPGDVELFGKLYEVPLFMGTF 165
L R K GLDQ P F + F F
Sbjct: 388 GLNLTLRKAKA----------------PSGLDQSRIP---------FSE--RKLKFSNRF 420
Query: 166 L-----FAS--LGIGVLIALEDEMKTPSSYRKNPFGI 195
L F S L + +D +K S+ I
Sbjct: 421 LPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQI 457
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 40.6 bits (94), Expect = 3e-04
Identities = 34/219 (15%), Positives = 62/219 (28%), Gaps = 64/219 (29%)
Query: 10 DFFIFWNHLGICCVYINFIADNFDQACHHFSPDTSLAKIHWELIITVVMIVLNQVKNLHF 69
DF IFW +L C + + + + P+ + H I + + +++ L
Sbjct: 181 DFKIFWLNLKNCNS-PETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLK 239
Query: 70 LSPFSSIESLI---NQRSKAGTKVHSFSNLIKGVGSPSFNSESLIKRFRLLKCNILLT-- 124
P+ L+ N ++ +FN L C ILLT
Sbjct: 240 SKPYE--NCLLVLLNVQNA---------KAWN-----AFN----------LSCKILLTTR 273
Query: 125 ------IGLGMVCYYIFRDGLDQPILRPGDVELFGKLYEV-------------PLFMGTF 165
+I D + L K + P +
Sbjct: 274 FKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLS-- 331
Query: 166 LFASLGIGVLIALEDEMKTPSSYRKNPFGIFNMGFTTII 204
+ A + D + T +++ + TTII
Sbjct: 332 IIAES-------IRDGLATWDNWKH----VNCDKLTTII 359
Score = 39.8 bits (92), Expect = 5e-04
Identities = 36/197 (18%), Positives = 64/197 (32%), Gaps = 45/197 (22%)
Query: 37 HHFSPDTSLAKIHWELIITVVMIVLNQVKNLHF-------LSPFSS--IESLINQRSKAG 87
HH +T + ++ I++V V N S S I+ +I +
Sbjct: 5 HHMDFETGEHQYQYKDILSVFEDAF--VDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVS 62
Query: 88 TKVHSFSNLIKGVGSPSFNSESLIKRF--RLLKCN---ILLTI-------GLGMVCYYIF 135
+ F L+ E ++++F +L+ N ++ I + Y
Sbjct: 63 GTLRLFWTLLS-------KQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQ 115
Query: 136 RDGL--DQPILRPGDV-------ELFGKLYEVPLFMGTFLFASLGIG--VLIALEDEMKT 184
RD L D + +V +L L E+ + LG G + D +
Sbjct: 116 RDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVAL--DVCLS 173
Query: 185 PSSYRKNPFGIF--NMG 199
K F IF N+
Sbjct: 174 YKVQCKMDFKIFWLNLK 190
Score = 39.5 bits (91), Expect = 7e-04
Identities = 39/210 (18%), Positives = 71/210 (33%), Gaps = 62/210 (29%)
Query: 39 FSPD----TSLAKIHW-ELIITVVMIVLNQVKNLHFLSPFSSIESLINQRSKAGT-KVHS 92
F P T L + W ++I + VM+V+N++ SL+ ++ K T + S
Sbjct: 381 FPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKY----------SLVEKQPKESTISIPS 430
Query: 93 --FSNLIKGVGSPSFNSESLIKRFRLLKC----NILLTIGLGMVCYYIFRDG--LDQPIL 144
+K + + S++ + + K +++ +I G L I
Sbjct: 431 IYLELKVKLENEYALH-RSIVDHYNIPKTFDSDDLIPPYLDQYFYSHI---GHHLKN-IE 485
Query: 145 RPGDVELFGKLYEVPLFMGTFLFASLGIGVLIALEDEMKTPSSYRKNPFGIFNMGFTTII 204
P + LF ++ L F F LE +++ S+ I N
Sbjct: 486 HPERMTLFRMVF---L---DFRF----------LEQKIRHDSTAWNASGSILN------- 522
Query: 205 IIYLFVGVIGYYKYGQLVEGSITLNIPKDD 234
+ Y Y I N PK +
Sbjct: 523 ---TLQQLKFYKPY-------ICDNDPKYE 542
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound,
amino-acid transport, cell inner membrane, cell
membrane, membrane; HET: ARG BNG; 3.00A {Escherichia
coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A
3ncy_A
Length = 445
Score = 28.1 bits (63), Expect = 3.0
Identities = 16/108 (14%), Positives = 31/108 (28%), Gaps = 13/108 (12%)
Query: 121 ILLTIGLGMVCYYIFRDGLDQPILRPGDVELFGKLYEVPLFMGTFLFASLGIGVLIALED 180
I+ G + FR + FG + + L++ +G+
Sbjct: 162 IVGIAVFGW---FWFRGETYMAAWNVSGLGTFGAIQST---LNVTLWSFIGVESASVAAG 215
Query: 181 EMKTPSSYRKN-PFGIFNMGFTTIIIIYLFVGVI--GYYKYGQLVEGS 225
+K P ++N P G + Y+ G L +
Sbjct: 216 VVKNP---KRNVPIATI-GGVLIAAVCYVLSTTAIMGMIPNAALRVSA 259
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic;
photosynthesis, rubisco activase, AAA+ protein; 2.95A
{Nicotiana tabacum} PDB: 3zw6_A
Length = 293
Score = 27.1 bits (60), Expect = 5.4
Identities = 8/24 (33%), Positives = 11/24 (45%), Gaps = 3/24 (12%)
Query: 137 DGLDQPILRPGDVELFGKLYEVPL 160
L P++R G +E K Y P
Sbjct: 166 STLYAPLIRDGRME---KFYWAPT 186
>1j4n_A Aquaporin 1; membrane protein, channel protein, transmembrane
helices; HET: BNG; 2.20A {Bos taurus} SCOP: f.19.1.1
PDB: 1h6i_A 1fqy_A 1ih5_A
Length = 271
Score = 26.2 bits (58), Expect = 9.3
Identities = 8/57 (14%), Positives = 18/57 (31%), Gaps = 3/57 (5%)
Query: 161 FMGTFLFASLGIGVLIALEDEMKTPSSYRKNP--FGI-FNMGFTTIIIIYLFVGVIG 214
F+ LF + IG + +K+ + + G + + + G
Sbjct: 18 FLAMILFIFISIGSALGFHYPIKSNQTTGAVQDNVKVSLAFGLSIATLAQSVGHISG 74
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.328 0.146 0.451
Gapped
Lambda K H
0.267 0.0616 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,753,183
Number of extensions: 222351
Number of successful extensions: 477
Number of sequences better than 10.0: 1
Number of HSP's gapped: 473
Number of HSP's successfully gapped: 17
Length of query: 235
Length of database: 6,701,793
Length adjustment: 91
Effective length of query: 144
Effective length of database: 4,160,982
Effective search space: 599181408
Effective search space used: 599181408
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 56 (25.6 bits)