RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy16921
         (235 letters)



>d1mrza1 b.43.5.1 (A:159-288) Riboflavin kinase domain of
           bifunctional FAD synthetase {Thermotoga maritima [TaxId:
           2336]}
          Length = 130

 Score = 26.2 bits (57), Expect = 2.3
 Identities = 11/73 (15%), Positives = 19/73 (26%), Gaps = 8/73 (10%)

Query: 11  FFIFWNHLGICCVYINFIADNFDQA-CHHFSPDTSLAKIHWELIITVVMIVLNQVKNLHF 69
                   G+  V       +        +  D         L + V+  + ++ K    
Sbjct: 46  LPDGKKKFGVMNVGFRPTVGDARNVKYEVYILDFEGDLYGQRLKLEVLKFMRDEKK---- 101

Query: 70  LSPFSSIESLINQ 82
              F SIE L   
Sbjct: 102 ---FDSIEELKAA 111


>d1q32a2 d.136.1.3 (A:302-538) Tyrosyl-DNA phosphodiesterase TDP1
           {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 237

 Score = 26.2 bits (57), Expect = 3.8
 Identities = 12/50 (24%), Positives = 21/50 (42%)

Query: 68  HFLSPFSSIESLINQRSKAGTKVHSFSNLIKGVGSPSFNSESLIKRFRLL 117
           H+L   SSI + +++        H    L  G+ SP     +  K+  +L
Sbjct: 4   HYLCQTSSIGTSLSRARDENLWTHLMIPLFTGIMSPPAKDTAGRKKAEIL 53


>d1ppjd2 f.23.11.1 (D:196-241) Cytochrome c1 subunit of cytochrome
           bc1 complex (Ubiquinol-cytochrome c reductase),
           transmembrane anchor {Cow (Bos taurus) [TaxId: 9913]}
          Length = 46

 Score = 23.5 bits (51), Expect = 5.1
 Identities = 4/20 (20%), Positives = 11/20 (55%)

Query: 198 MGFTTIIIIYLFVGVIGYYK 217
           MG   ++++ L + ++   K
Sbjct: 9   MGLKMLLMMGLLLPLVYAMK 28


>d1ti3a_ c.47.1.1 (A:) Thioredoxin {European aspen (Populus
           tremula), thioredoxin H [TaxId: 113636]}
          Length = 113

 Score = 24.8 bits (53), Expect = 5.7
 Identities = 12/86 (13%), Positives = 25/86 (29%), Gaps = 5/86 (5%)

Query: 6   IIIVDFFIFWNHLGICCVYINFIADNFDQACHHFSPDTSLAKIHWELII-----TVVMIV 60
           +I+VDF   W         I                D    K   E        T + + 
Sbjct: 28  LIVVDFTASWCPPCKMIAPIFAELAKKFPNVTFLKVDVDELKAVAEEWNVEAMPTFIFLK 87

Query: 61  LNQVKNLHFLSPFSSIESLINQRSKA 86
             ++ +    +    + +L+ + + A
Sbjct: 88  DGKLVDKTVGADKDGLPTLVAKHATA 113


>d1nb9a_ b.43.5.1 (A:) Riboflavin kinase {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 147

 Score = 25.0 bits (54), Expect = 6.9
 Identities = 12/83 (14%), Positives = 22/83 (26%), Gaps = 14/83 (16%)

Query: 4   VNIIIVDFFIFWNHLGICCVYINFIA-DNFDQACHHFSPDTSLAKIHWELIITVVMIVLN 62
           +            H  +  +  N    +       H             L + +      
Sbjct: 45  IYYGWASVGSGDVHKMVVSIGWNPYYKNTKKSMETHIMHTFKEDFYGEILNVAI------ 98

Query: 63  QVKNLHFLSP---FSSIESLINQ 82
               + +L P   F S+ESLI+ 
Sbjct: 99  ----VGYLRPEKNFDSLESLISA 117


>d1fx8a_ f.19.1.1 (A:) Glycerol uptake facilitator protein GlpF
           {Escherichia coli [TaxId: 562]}
          Length = 254

 Score = 25.1 bits (54), Expect = 7.0
 Identities = 16/54 (29%), Positives = 21/54 (38%), Gaps = 4/54 (7%)

Query: 161 FMGTFLFASLGIGVLIALEDEMKTPSSYRKNPFGIFNMGFTTIIIIYLFVGVIG 214
           F+GT L    G+G + AL    K   +           G    + IYL  GV G
Sbjct: 10  FLGTGLLIFFGVGCVAAL----KVAGASFGQWEISVIWGLGVAMAIYLTAGVSG 59


>d1j4na_ f.19.1.1 (A:) Aquaporin-1 {Cow (Bos taurus) [TaxId: 9913]}
          Length = 249

 Score = 25.1 bits (54), Expect = 7.6
 Identities = 8/57 (14%), Positives = 18/57 (31%), Gaps = 3/57 (5%)

Query: 161 FMGTFLFASLGIGVLIALEDEMKTPSSYRKNPFGIFN---MGFTTIIIIYLFVGVIG 214
           F+   LF  + IG  +     +K+  +       +      G +   +      + G
Sbjct: 18  FLAMILFIFISIGSALGFHYPIKSNQTTGAVQDNVKVSLAFGLSIATLAQSVGHISG 74


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.328    0.146    0.451 

Gapped
Lambda     K      H
   0.267   0.0525    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 938,950
Number of extensions: 43649
Number of successful extensions: 105
Number of sequences better than 10.0: 1
Number of HSP's gapped: 105
Number of HSP's successfully gapped: 13
Length of query: 235
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 152
Effective length of database: 1,268,006
Effective search space: 192736912
Effective search space used: 192736912
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 51 (23.9 bits)