BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy16922
(75 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2G02|A Chain A, Nisin Cyclase
pdb|2G0D|A Chain A, Nisin Cyclase
Length = 409
Score = 28.5 bits (62), Expect = 1.1, Method: Composition-based stats.
Identities = 15/58 (25%), Positives = 24/58 (41%), Gaps = 4/58 (6%)
Query: 2 FAQIEKNENLLTSKIVSLENNMKQPADYRKPCGVFNIGMVF----ITCLYGFTGLVGY 55
+ + K N L S + EN M Q P G N+G+ + C+ + + GY
Sbjct: 166 LSNLTKENNGLISLYIKSENQMSQSESEMYPLGCLNMGLAHGLAGVGCILAYAHIKGY 223
>pdb|2PTM|A Chain A, Structure And Rearrangements In The Carboxy-Terminal
Region Of Spih Channels
Length = 198
Score = 26.6 bits (57), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 18/36 (50%)
Query: 8 NENLLTSKIVSLENNMKQPADYRKPCGVFNIGMVFI 43
+ N +T + LE + QPADY G F M FI
Sbjct: 83 DSNFVTRVVTLLEFEVFQPADYVIQEGTFGDRMFFI 118
>pdb|2M09|A Chain A, Structure, Phosphorylation And U2af65 Binding Of The
Nterminal Domain Of Splicing Factor 1 During 3 Splice
Site Recognition
Length = 121
Score = 26.6 bits (57), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
Query: 6 EKNENLLTSKIVSLENNMKQPADYRKPC 33
E+ NL+T ++V+L + K PADY+ P
Sbjct: 83 EERHNLIT-EMVALNPDFKPPADYKPPA 109
>pdb|2M0G|A Chain A, Structure, Phosphorylation And U2af65 Binding Of The
Nterminal Domain Of Splicing Factor 1 During 3 Splice
Site Recognition
Length = 145
Score = 26.2 bits (56), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
Query: 6 EKNENLLTSKIVSLENNMKQPADYRKPC 33
E+ NL+T ++V+L + K PADY+ P
Sbjct: 107 EERHNLIT-EMVALNPDFKPPADYKPPA 133
>pdb|4FXX|A Chain A, Structure Of Sf1 Coiled-coil Domain
pdb|4FXX|B Chain B, Structure Of Sf1 Coiled-coil Domain
pdb|4FXX|C Chain C, Structure Of Sf1 Coiled-coil Domain
pdb|4FXX|D Chain D, Structure Of Sf1 Coiled-coil Domain
Length = 112
Score = 25.8 bits (55), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
Query: 6 EKNENLLTSKIVSLENNMKQPADYRKP 32
E+ NL+T ++V+L + K PADY+ P
Sbjct: 87 EERHNLIT-EMVALNPDFKPPADYKPP 112
>pdb|4A5Q|A Chain A, Crystal Structure Of The Chitinase Chi1 Fitted Into The 3d
Structure Of The Yersinia Entomophaga Toxin Complex
pdb|4A5Q|B Chain B, Crystal Structure Of The Chitinase Chi1 Fitted Into The 3d
Structure Of The Yersinia Entomophaga Toxin Complex
pdb|4A5Q|C Chain C, Crystal Structure Of The Chitinase Chi1 Fitted Into The 3d
Structure Of The Yersinia Entomophaga Toxin Complex
pdb|4A5Q|D Chain D, Crystal Structure Of The Chitinase Chi1 Fitted Into The 3d
Structure Of The Yersinia Entomophaga Toxin Complex
pdb|4A5Q|E Chain E, Crystal Structure Of The Chitinase Chi1 Fitted Into The 3d
Structure Of The Yersinia Entomophaga Toxin Complex
Length = 546
Score = 25.8 bits (55), Expect = 6.6, Method: Composition-based stats.
Identities = 12/32 (37%), Positives = 16/32 (50%)
Query: 39 GMVFITCLYGFTGLVGYMKYGAATQGSVTLNL 70
G F +Y F GL+G KY A S+ + L
Sbjct: 111 GRPFKRLIYSFGGLIGDKKYSADGNASIAVRL 142
>pdb|3OA5|A Chain A, The Structure Of Chi1, A Chitinase From Yersinia
Entomophaga
pdb|3OA5|B Chain B, The Structure Of Chi1, A Chitinase From Yersinia
Entomophaga
Length = 574
Score = 25.8 bits (55), Expect = 6.6, Method: Composition-based stats.
Identities = 12/32 (37%), Positives = 16/32 (50%)
Query: 39 GMVFITCLYGFTGLVGYMKYGAATQGSVTLNL 70
G F +Y F GL+G KY A S+ + L
Sbjct: 139 GRPFKRLIYSFGGLIGDKKYSADGNASIAVRL 170
>pdb|2R44|A Chain A, Crystal Structure Of A Putative Atpase (Chu_0153) From
Cytophaga Hutchinsonii Atcc 33406 At 2.00 A Resolution
Length = 331
Score = 25.8 bits (55), Expect = 7.0, Method: Composition-based stats.
Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 3/35 (8%)
Query: 38 IGMVFITCL---YGFTGLVGYMKYGAATQGSVTLN 69
I +VF T YG Y+ YGA+T+ ++ LN
Sbjct: 236 IELVFATRFPAEYGLEAEASYILYGASTRAAINLN 270
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.136 0.398
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,103,755
Number of Sequences: 62578
Number of extensions: 66688
Number of successful extensions: 175
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 167
Number of HSP's gapped (non-prelim): 9
length of query: 75
length of database: 14,973,337
effective HSP length: 44
effective length of query: 31
effective length of database: 12,219,905
effective search space: 378817055
effective search space used: 378817055
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 45 (21.9 bits)