Query psy16922
Match_columns 75
No_of_seqs 110 out of 1020
Neff 7.0
Searched_HMMs 46136
Date Fri Aug 16 17:08:33 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16922.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/16922hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1304|consensus 99.9 5.6E-24 1.2E-28 155.7 3.8 72 2-73 246-317 (449)
2 PF01490 Aa_trans: Transmembra 99.5 4.5E-15 9.8E-20 104.6 1.1 70 5-74 200-269 (409)
3 PLN03074 auxin influx permease 99.5 9.5E-15 2.1E-19 107.6 2.2 66 6-74 242-309 (473)
4 KOG1303|consensus 99.5 1.8E-14 3.9E-19 105.6 3.6 62 7-71 238-299 (437)
5 PTZ00206 amino acid transporte 99.5 1.3E-14 2.9E-19 106.3 2.2 67 5-74 264-333 (467)
6 KOG1305|consensus 99.0 5.6E-11 1.2E-15 86.8 1.5 69 5-74 202-270 (411)
7 KOG4303|consensus 98.9 3.9E-10 8.5E-15 82.1 1.6 67 5-74 310-376 (524)
8 COG0814 SdaC Amino acid permea 98.5 7.7E-08 1.7E-12 70.1 2.6 67 5-74 201-269 (415)
9 TIGR00837 araaP aromatic amino 90.0 0.1 2.2E-06 37.0 0.2 46 9-57 190-236 (381)
10 PRK11021 putative transporter; 88.1 0.34 7.3E-06 34.8 1.8 45 5-52 185-230 (410)
11 TIGR00912 2A0309 spore germina 86.7 0.28 6E-06 34.5 0.7 55 6-63 188-242 (359)
12 TIGR00906 2A0303 cationic amin 86.2 0.43 9.3E-06 36.2 1.5 46 5-53 239-285 (557)
13 PRK10655 potE putrescine trans 84.7 0.63 1.4E-05 33.6 1.8 46 5-53 197-243 (438)
14 PRK10435 cadB lysine/cadaverin 83.9 0.65 1.4E-05 33.7 1.5 46 6-54 196-242 (435)
15 KOG1287|consensus 83.7 0.88 1.9E-05 34.6 2.2 46 7-54 214-259 (479)
16 TIGR00909 2A0306 amino acid tr 81.7 0.98 2.1E-05 32.4 1.7 45 6-53 204-249 (429)
17 COG0531 PotE Amino acid transp 81.5 1 2.2E-05 32.2 1.7 53 5-60 209-262 (466)
18 PRK11357 frlA putative fructos 81.5 0.92 2E-05 32.9 1.6 45 5-52 203-248 (445)
19 TIGR00911 2A0308 L-type amino 80.6 0.79 1.7E-05 33.9 1.0 45 6-53 244-289 (501)
20 TIGR00910 2A0307_GadC glutamat 79.9 1.1 2.5E-05 33.4 1.6 42 7-51 204-246 (507)
21 PRK10644 arginine:agmatin anti 79.8 0.91 2E-05 33.0 1.1 46 5-53 199-245 (445)
22 TIGR03813 put_Glu_GABA_T putat 78.2 1.8 3.9E-05 31.7 2.2 43 8-53 205-248 (474)
23 PF02468 PsbN: Photosystem II 77.1 3.7 8E-05 21.4 2.6 29 35-63 4-32 (43)
24 PRK11387 S-methylmethionine tr 75.8 0.95 2.1E-05 33.2 0.2 45 6-53 215-260 (471)
25 PF13520 AA_permease_2: Amino 75.8 1.1 2.3E-05 32.0 0.5 52 5-60 196-247 (426)
26 TIGR03810 arg_ornith_anti argi 73.7 2.3 5E-05 31.2 1.8 46 7-55 205-250 (468)
27 PRK10197 gamma-aminobutyrate t 73.6 1.4 3E-05 32.2 0.6 46 5-53 189-235 (446)
28 PF07423 DUF1510: Protein of u 73.5 1.6 3.6E-05 29.9 0.9 32 29-62 9-40 (217)
29 TIGR03428 ureacarb_perm permea 70.5 5.1 0.00011 29.4 3.0 44 5-51 221-265 (475)
30 PRK15238 inner membrane transp 70.0 3 6.5E-05 30.9 1.7 44 6-52 220-264 (496)
31 PRK13183 psbN photosystem II r 69.8 4.8 0.0001 21.3 2.0 29 35-63 7-35 (46)
32 CHL00020 psbN photosystem II p 69.0 4.6 0.0001 21.0 1.8 29 35-63 4-32 (43)
33 TIGR00905 2A0302 transporter, 68.4 2.6 5.7E-05 30.9 1.0 45 6-53 208-252 (473)
34 PRK15049 L-asparagine permease 65.2 2.2 4.7E-05 31.8 0.1 47 4-53 227-274 (499)
35 TIGR00913 2A0310 amino acid pe 64.9 2.8 6.1E-05 30.6 0.6 44 6-52 206-250 (478)
36 PRK11049 D-alanine/D-serine/gl 64.3 2.4 5.1E-05 31.2 0.2 45 6-53 220-265 (469)
37 PRK10249 phenylalanine transpo 63.9 2.8 6.1E-05 30.8 0.5 43 6-51 218-261 (458)
38 TIGR00908 2A0305 ethanolamine 60.7 5.6 0.00012 28.8 1.5 43 6-51 200-243 (442)
39 TIGR01773 GABAperm gamma-amino 60.1 3.4 7.4E-05 30.0 0.3 45 5-52 209-254 (452)
40 PRK10580 proY putative proline 59.8 3.2 7E-05 30.3 0.2 44 5-51 207-251 (457)
41 PF00324 AA_permease: Amino ac 59.0 5.6 0.00012 29.1 1.3 55 5-61 208-262 (478)
42 TIGR00907 2A0304 amino acid pe 57.7 12 0.00026 27.4 2.9 40 6-48 226-266 (482)
43 PRK10238 aromatic amino acid t 57.0 4.4 9.6E-05 29.7 0.5 43 5-50 208-251 (456)
44 PF03222 Trp_Tyr_perm: Tryptop 55.8 2.6 5.6E-05 30.8 -0.9 42 6-50 193-235 (394)
45 PRK10836 lysine transporter; P 52.8 5 0.00011 29.7 0.2 45 6-53 214-259 (489)
46 PF09163 Form-deh_trans: Forma 50.4 24 0.00052 18.4 2.5 33 32-64 8-40 (44)
47 PF07136 DUF1385: Protein of u 50.3 23 0.0005 24.6 3.2 46 5-51 116-162 (236)
48 PF03845 Spore_permease: Spore 48.2 6.3 0.00014 27.4 0.1 52 8-62 186-237 (320)
49 COG3476 Tryptophan-rich sensor 46.9 33 0.00072 22.6 3.3 49 11-64 25-74 (161)
50 PF13253 DUF4044: Protein of u 46.1 10 0.00022 18.9 0.6 28 24-51 4-31 (35)
51 PRK10483 tryptophan permease; 44.8 7.8 0.00017 28.8 0.2 41 7-50 202-243 (414)
52 PF12729 4HB_MCP_1: Four helix 44.5 24 0.00053 21.2 2.4 25 36-60 8-32 (181)
53 PLN03223 Polycystin cation cha 41.6 26 0.00056 30.5 2.7 22 42-63 1336-1357(1634)
54 PF08016 PKD_channel: Polycyst 40.2 37 0.0008 24.7 3.1 24 40-63 339-362 (425)
55 KOG4404|consensus 39.3 37 0.0008 25.0 2.9 21 35-55 7-27 (350)
56 PF03073 TspO_MBR: TspO/MBR fa 38.5 65 0.0014 20.1 3.7 39 17-60 23-62 (148)
57 PRK15132 tyrosine transporter 36.8 14 0.0003 27.3 0.4 41 7-50 191-232 (403)
58 PRK10746 putative transport pr 36.0 15 0.00032 27.1 0.5 44 5-51 208-252 (461)
59 PRK00968 tetrahydromethanopter 35.9 31 0.00068 24.0 2.0 20 22-42 206-225 (240)
60 PF09451 ATG27: Autophagy-rela 35.6 34 0.00074 23.7 2.2 25 37-61 199-223 (268)
61 PF13396 PLDc_N: Phospholipase 34.0 39 0.00085 16.8 1.8 24 38-61 23-46 (46)
62 PF07125 DUF1378: Protein of u 33.6 43 0.00093 18.4 1.9 23 35-59 7-29 (59)
63 PF04560 RNA_pol_Rpb2_7: RNA p 31.7 9.9 0.00021 22.0 -0.8 27 2-28 5-31 (81)
64 TIGR00930 2a30 K-Cl cotranspor 31.6 19 0.00042 29.5 0.5 41 9-52 292-333 (953)
65 cd08684 C2A_Tac2-N C2 domain f 29.4 24 0.00052 21.5 0.5 24 4-27 57-80 (103)
66 PRK14748 kdpF potassium-transp 28.6 77 0.0017 15.0 2.2 9 50-58 13-21 (29)
67 COG5052 YOP1 Protein involved 28.2 48 0.0011 22.3 1.9 43 9-55 18-60 (186)
68 PF10660 MitoNEET_N: Iron-cont 27.6 20 0.00044 20.1 0.0 39 21-59 17-55 (64)
69 KOG1286|consensus 27.4 47 0.001 25.7 1.9 46 5-52 240-285 (554)
70 PHA02980 hypothetical protein; 26.0 1.2E+02 0.0027 19.9 3.4 34 20-58 33-67 (160)
71 PF13906 AA_permease_C: C-term 24.7 88 0.0019 16.5 2.2 17 44-60 32-48 (51)
72 PF11119 DUF2633: Protein of u 24.2 90 0.0019 17.3 2.2 21 34-54 12-34 (59)
73 PRK09400 secE preprotein trans 23.9 1.1E+02 0.0024 16.7 2.6 19 39-57 35-53 (61)
74 PF05817 Ribophorin_II: Oligos 23.2 1E+02 0.0022 24.4 3.1 49 12-62 527-575 (636)
75 COG2966 Uncharacterized conser 21.4 63 0.0014 22.5 1.5 25 24-48 118-142 (250)
76 TIGR00327 secE_euk_arch protei 20.6 1.4E+02 0.003 16.4 2.5 19 39-57 31-49 (61)
77 PRK10370 formate-dependent nit 20.0 1.5E+02 0.0033 19.3 3.1 24 38-61 9-32 (198)
No 1
>KOG1304|consensus
Probab=99.89 E-value=5.6e-24 Score=155.65 Aligned_cols=72 Identities=39% Similarity=0.685 Sum_probs=69.0
Q ss_pred hhhhhcccccceeeehhhHHhCCCCCCCCCccchhhhHHHHHHHHHHHHHhhhHhhccccccchhhhcCCCC
Q psy16922 2 FAQIEKNENLLTSKIVSLENNMKQPADYRKPCGVFNIGMVFITCLYGFTGLVGYMKYGAATQGSVTLNLPKT 73 (75)
Q Consensus 2 ~~~~~~~~~~g~~vv~~i~~~Mk~p~~f~~~~~vl~~s~~i~~~ly~~~G~~GYl~fG~~v~~~I~lnlp~~ 73 (75)
|.-.++|++||+|+++|+||+||+|++|+.++++++.+|.+++++|..+|++||++|||+++++||+|+|++
T Consensus 246 f~GtaifafEGig~VLPlEn~Mk~P~~F~g~~gVLn~~M~~V~~ly~~~Gf~GYl~fG~~v~~sITLNLP~~ 317 (449)
T KOG1304|consen 246 FFGTAIFAFEGIGMVLPLENSMKKPQKFPGPFGVLNLGMGIVTLLYIFLGFFGYLAFGDDVKGSITLNLPQE 317 (449)
T ss_pred HHHHHHHHhccceEEEehhhcccChhhcCCccchHHHHHHHHHHHHHHHHHHHHhhccccccceEEecCCcc
Confidence 455789999999999999999999999999999999999999999999999999999999999999999993
No 2
>PF01490 Aa_trans: Transmembrane amino acid transporter protein; InterPro: IPR013057 This transmembrane region is found in many amino acid transporters including P34579 from SWISSPROT (UNC-47) and P40501 from SWISSPROT (MTR). UNC-47 encodes a vesicular amino butyric acid (GABA) transporter, (VGAT) and is is predicted to have 10 transmembrane domains UNC47_CAEEL []. MTR is an N system amino acid transporter system protein involved in methyltryptophan resistance MTR_NEUCR. Other members of this family include proline transporters and amino acid transporters whose specificity has not yet been identified.
Probab=99.50 E-value=4.5e-15 Score=104.55 Aligned_cols=70 Identities=27% Similarity=0.536 Sum_probs=66.2
Q ss_pred hhcccccceeeehhhHHhCCCCCCCCCccchhhhHHHHHHHHHHHHHhhhHhhccccccchhhhcCCCCC
Q psy16922 5 IEKNENLLTSKIVSLENNMKQPADYRKPCGVFNIGMVFITCLYGFTGLVGYMKYGAATQGSVTLNLPKTS 74 (75)
Q Consensus 5 ~~~~~~~g~~vv~~i~~~Mk~p~~f~~~~~vl~~s~~i~~~ly~~~G~~GYl~fG~~v~~~I~lnlp~~~ 74 (75)
+..++|++|..+++++++||+|++|+|..+++.+++.+++++|..+|++||++||++++++++.|+|+++
T Consensus 200 i~~faf~~~~~~~~i~~~m~~~~~~~~~~~~~~~s~~~~~~~y~~~g~~gy~~fg~~~~~~il~n~~~~~ 269 (409)
T PF01490_consen 200 IIIFAFSCHPNLPPIQSEMKDPSKFKKMKKVLSISMIICFIIYLLFGIFGYLAFGDSVQGNILLNLPNDD 269 (409)
T ss_pred hhhhhhhcccccceeeeeccCCccccccceeeeehhhhhhHHhhhhhhcccceeeeeecchhhhcCCCcc
Confidence 5578999999999999999999999877779999999999999999999999999999999999999875
No 3
>PLN03074 auxin influx permease; Provisional
Probab=99.49 E-value=9.5e-15 Score=107.58 Aligned_cols=66 Identities=14% Similarity=0.156 Sum_probs=58.3
Q ss_pred hcccccceeeehhhHHhCCCCCCCCCccchhhhHHHHHHHHHHHHHhhhHhhccccccc-h-hhhcCCCCC
Q psy16922 6 EKNENLLTSKIVSLENNMKQPADYRKPCGVFNIGMVFITCLYGFTGLVGYMKYGAATQG-S-VTLNLPKTS 74 (75)
Q Consensus 6 ~~~~~~g~~vv~~i~~~Mk~p~~f~~~~~vl~~s~~i~~~ly~~~G~~GYl~fG~~v~~-~-I~lnlp~~~ 74 (75)
..|+||||++++|++++||||++|++ ++.++...++.+|+.+|+.||+.|||++++ + ++.|+|++.
T Consensus 242 i~faf~g~~v~~~I~~~M~~P~~F~~---~~~l~~~~v~~~y~~~~~~gY~~fG~~~~~~s~~l~~lp~~~ 309 (473)
T PLN03074 242 ILYTFGGHAVTVEIMHAMWKPQKFKY---IYLAATLYVLTLTLPSAAAVYWAFGDELLTHSNAFSLLPRSG 309 (473)
T ss_pred HHHHhcccccHHHHHHhccChhcccc---hHHHHHHHHHHHHHHHHHeeeeeechhhhhchhHHhcCCCch
Confidence 57999999999999999999999986 888999999999999999999999999864 4 455688653
No 4
>KOG1303|consensus
Probab=99.49 E-value=1.8e-14 Score=105.65 Aligned_cols=62 Identities=21% Similarity=0.421 Sum_probs=59.8
Q ss_pred cccccceeeehhhHHhCCCCCCCCCccchhhhHHHHHHHHHHHHHhhhHhhccccccchhhhcCC
Q psy16922 7 KNENLLTSKIVSLENNMKQPADYRKPCGVFNIGMVFITCLYGFTGLVGYMKYGAATQGSVTLNLP 71 (75)
Q Consensus 7 ~~~~~g~~vv~~i~~~Mk~p~~f~~~~~vl~~s~~i~~~ly~~~G~~GYl~fG~~v~~~I~lnlp 71 (75)
.|+|.||+++|+|+++||+|++|.| ++..+..+++.+|+.+++.||++|||+++++++.|++
T Consensus 238 aFaf~gH~v~peIq~tMk~p~~f~~---~~lis~~~~~~~y~~vai~GY~aFG~~~~~~il~s~~ 299 (437)
T KOG1303|consen 238 AFAYGGHAVLPEIQHTMKSPPKFKK---ALLISYIIVTFLYFPVAIIGYWAFGDSVPDNILLSLQ 299 (437)
T ss_pred eeeecCCeeeeehHhhcCCchhhhh---HHHHHHHHHHHHHHHHHHhhhhhhccccchhhhhccc
Confidence 5899999999999999999999986 9999999999999999999999999999999999995
No 5
>PTZ00206 amino acid transporter; Provisional
Probab=99.48 E-value=1.3e-14 Score=106.27 Aligned_cols=67 Identities=21% Similarity=0.307 Sum_probs=59.8
Q ss_pred hhcccccceeeehhhHHhCCCCC--CCCCccchhhhHHHHHHHHHHHHHhhhHhhccccccchhhhcC-CCCC
Q psy16922 5 IEKNENLLTSKIVSLENNMKQPA--DYRKPCGVFNIGMVFITCLYGFTGLVGYMKYGAATQGSVTLNL-PKTS 74 (75)
Q Consensus 5 ~~~~~~~g~~vv~~i~~~Mk~p~--~f~~~~~vl~~s~~i~~~ly~~~G~~GYl~fG~~v~~~I~lnl-p~~~ 74 (75)
+-.++|++|..+++++++||+|+ ++. +++.+++.+|+++|..+|++||++||++++++|++|+ |.++
T Consensus 264 i~~faF~~h~~~~~i~~~M~~~t~~~~~---~v~~~s~~i~~~lY~~~G~~GYl~fG~~v~~~Illn~~p~~~ 333 (467)
T PTZ00206 264 VFIFAYVFQITAYEVYMDMTNRSVGKFV---LASTIAMGMCFTMYVLTAFFGYMDFGRNVTGSVLLMYDPVNE 333 (467)
T ss_pred HHHhhhhhhhhhHHHHHhhcccchhHHH---HHHHHHHHHHHHHHHHHHHhhhhccccccchHHHHhCCCCCC
Confidence 45789999999999999999965 444 4899999999999999999999999999999999999 5554
No 6
>KOG1305|consensus
Probab=99.05 E-value=5.6e-11 Score=86.78 Aligned_cols=69 Identities=26% Similarity=0.379 Sum_probs=62.4
Q ss_pred hhcccccceeeehhhHHhCCCCCCCCCccchhhhHHHHHHHHHHHHHhhhHhhccccccchhhhcCCCCC
Q psy16922 5 IEKNENLLTSKIVSLENNMKQPADYRKPCGVFNIGMVFITCLYGFTGLVGYMKYGAATQGSVTLNLPKTS 74 (75)
Q Consensus 5 ~~~~~~~g~~vv~~i~~~Mk~p~~f~~~~~vl~~s~~i~~~ly~~~G~~GYl~fG~~v~~~I~lnlp~~~ 74 (75)
+..+++.+|.=+.++++|||||++ .|+.++.+.+...++.+|..+|.+||++|||++.++++.++|++.
T Consensus 202 i~~faf~Ch~n~~~i~~El~~~s~-~~i~~v~~~~~~~~~~iy~~~g~~GYL~Fg~~v~~n~l~~~~~~~ 270 (411)
T KOG1305|consen 202 IFVFAFTCHSNVFPIYNELKDRSV-KKIQRVSNIAIILATLIYLLTGLFGYLTFGDLVKGNLLHNYDSIL 270 (411)
T ss_pred hhheeeeccccceeeeeeeeCchH-HHHHHHHHHHHHHHHHHHHHHHHhhhheecccchHHHHhcCCccc
Confidence 567899999999999999999985 345568999999999999999999999999999999999998764
No 7
>KOG4303|consensus
Probab=98.92 E-value=3.9e-10 Score=82.14 Aligned_cols=67 Identities=24% Similarity=0.381 Sum_probs=62.6
Q ss_pred hhcccccceeeehhhHHhCCCCCCCCCccchhhhHHHHHHHHHHHHHhhhHhhccccccchhhhcCCCCC
Q psy16922 5 IEKNENLLTSKIVSLENNMKQPADYRKPCGVFNIGMVFITCLYGFTGLVGYMKYGAATQGSVTLNLPKTS 74 (75)
Q Consensus 5 ~~~~~~~g~~vv~~i~~~Mk~p~~f~~~~~vl~~s~~i~~~ly~~~G~~GYl~fG~~v~~~I~lnlp~~~ 74 (75)
|-+|+|..+-.+|+++.+|++|++|. .++.|+-+...++...+|.+|||+||++++..||.|||+..
T Consensus 310 ~iVFsYTSqIFLP~LEGNM~~ps~Fn---~Ml~WsHIAAaVfK~~Fg~~~fLTf~~~TqevItnnLp~qs 376 (524)
T KOG4303|consen 310 MIVFSYTSQIFLPNLEGNMKNPSQFN---VMLKWSHIAAAVFKVVFGMLGFLTFGELTQEVITNNLPNQS 376 (524)
T ss_pred EEEEeeeceeeccccccccCChhHhe---eeeehHHHHHHHHHHHHHHheeeeechhhHHHHhcCCCccc
Confidence 45789999999999999999999998 48999999999999999999999999999999999999853
No 8
>COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism]
Probab=98.49 E-value=7.7e-08 Score=70.12 Aligned_cols=67 Identities=21% Similarity=0.254 Sum_probs=61.4
Q ss_pred hhcccccceeeehhhHHhCCCCCC--CCCccchhhhHHHHHHHHHHHHHhhhHhhccccccchhhhcCCCCC
Q psy16922 5 IEKNENLLTSKIVSLENNMKQPAD--YRKPCGVFNIGMVFITCLYGFTGLVGYMKYGAATQGSVTLNLPKTS 74 (75)
Q Consensus 5 ~~~~~~~g~~vv~~i~~~Mk~p~~--f~~~~~vl~~s~~i~~~ly~~~G~~GYl~fG~~v~~~I~lnlp~~~ 74 (75)
+..+++++|+.++++.++|+++++ .+| +...+..+..++|..+++++|..+|+++.++++.+.|+++
T Consensus 201 v~vfsF~~h~~i~si~~~~~~~~~~~~~k---~~~~~~~~~~vlyi~~~~~~~~~~~~~~~~~il~~~~~~~ 269 (415)
T COG0814 201 VFVFSFGFHGNIPSLVNYMRKNSKKAVRK---AILIGSLIALVLYILVGFFVFGCFGSLVFGNILAAKEQNI 269 (415)
T ss_pred HHHhhhhCCccchHHHHHhccchhHHHHH---HHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHccCchH
Confidence 467899999999999999999875 554 9999999999999999999999999999999999998764
No 9
>TIGR00837 araaP aromatic amino acid transport protein. aromatic amino acid transporters and includes the tyrosine permease, TyrP, of E. coli, and the tryptophan transporters TnaB and Mtr of E. coli.
Probab=90.05 E-value=0.1 Score=37.04 Aligned_cols=46 Identities=15% Similarity=0.067 Sum_probs=33.7
Q ss_pred cccceeeehhhHHhCCCC-CCCCCccchhhhHHHHHHHHHHHHHhhhHhh
Q psy16922 9 ENLLTSKIVSLENNMKQP-ADYRKPCGVFNIGMVFITCLYGFTGLVGYMK 57 (75)
Q Consensus 9 ~~~g~~vv~~i~~~Mk~p-~~f~~~~~vl~~s~~i~~~ly~~~G~~GYl~ 57 (75)
++..+++++++..++++| ++.+ +.+..+..+++++|+.+.......
T Consensus 190 ~fg~~~~i~~~~~~~~~~~k~i~---raii~g~~i~~~lY~l~~~~~~g~ 236 (381)
T TIGR00837 190 SFGFHGNVPSLYKYYDGNVKKVK---KSILIGSAIALVLYILWQLATMGN 236 (381)
T ss_pred HHHcccccHHHHHHhccCHHHHH---HHHHHHHHHHHHHHHHHHHHHhCC
Confidence 455556789999999754 4444 599999999999999885543333
No 10
>PRK11021 putative transporter; Provisional
Probab=88.10 E-value=0.34 Score=34.79 Aligned_cols=45 Identities=16% Similarity=0.221 Sum_probs=37.5
Q ss_pred hhcccccceeeehhhHHhCCCCC-CCCCccchhhhHHHHHHHHHHHHHh
Q psy16922 5 IEKNENLLTSKIVSLENNMKQPA-DYRKPCGVFNIGMVFITCLYGFTGL 52 (75)
Q Consensus 5 ~~~~~~~g~~vv~~i~~~Mk~p~-~f~~~~~vl~~s~~i~~~ly~~~G~ 52 (75)
+..++|.|.-.....-.|+|||+ +.| +.+..+..++.++|+....
T Consensus 185 ~~~~af~G~e~~~~~a~E~k~P~k~iP---rAi~~~~~~~~~lYil~~~ 230 (410)
T PRK11021 185 VMFWCFVGIEAFAHLASEFKNPERDFP---RALMIGLLLAGLVYWACTV 230 (410)
T ss_pred HHHHHHhcHHHHHhhHHhccCcccccc---HHHHHHHHHHHHHHHHHHH
Confidence 35678888888999999999996 455 5999999999999998764
No 11
>TIGR00912 2A0309 spore germination protein (amino acid permease). This model describes spore germination protein GerKB and paralogs from Bacillus subtilis, Clostridium tetani, and other known or predicted endospore-forming members of the Firmicutes (low-GC Gram positive bacteria). Members show some similarity to amino acid permeases.
Probab=86.71 E-value=0.28 Score=34.51 Aligned_cols=55 Identities=13% Similarity=0.047 Sum_probs=44.0
Q ss_pred hcccccceeeehhhHHhCCCCCCCCCccchhhhHHHHHHHHHHHHHhhhHhhcccccc
Q psy16922 6 EKNENLLTSKIVSLENNMKQPADYRKPCGVFNIGMVFITCLYGFTGLVGYMKYGAATQ 63 (75)
Q Consensus 6 ~~~~~~g~~vv~~i~~~Mk~p~~f~~~~~vl~~s~~i~~~ly~~~G~~GYl~fG~~v~ 63 (75)
..+++.|.-++.-+..++|+|++.+| ....+..++..+|..+-...-..+|.+..
T Consensus 188 ~~~~f~g~~i~~~~~~~~~~~~~~~k---~~~~~~~~~~~ly~~~~~~~i~~lg~~~~ 242 (359)
T TIGR00912 188 VTFAFGEIEIFFLLFPLLSKKKKIKK---SIIKAIIIGVLLYILTTFVSISVFGGNVT 242 (359)
T ss_pred hhhhhHHHHHHHHHHHHhCChhhhHH---HHHHHHHHHHHHHHHHHHHHHheecHHHh
Confidence 44667788888888899999987765 88999999999999887777777776543
No 12
>TIGR00906 2A0303 cationic amino acid transport permease.
Probab=86.18 E-value=0.43 Score=36.19 Aligned_cols=46 Identities=9% Similarity=-0.042 Sum_probs=38.2
Q ss_pred hhcccccceeeehhhHHhCCCCCC-CCCccchhhhHHHHHHHHHHHHHhh
Q psy16922 5 IEKNENLLTSKIVSLENNMKQPAD-YRKPCGVFNIGMVFITCLYGFTGLV 53 (75)
Q Consensus 5 ~~~~~~~g~~vv~~i~~~Mk~p~~-f~~~~~vl~~s~~i~~~ly~~~G~~ 53 (75)
...++|.|.-.+...-.|+|||++ .| +.+..++.+++++|+.+...
T Consensus 239 ~~~faf~Gfd~v~~~aeE~knP~r~iP---~aii~sl~i~~vlY~lv~~~ 285 (557)
T TIGR00906 239 TCFFAFIGFDAIATTGEEVKNPQRAIP---IGIVTSLLVCFVAYFLMSAA 285 (557)
T ss_pred HHHHHHhhHHHHHHhHHhccCcccccc---HHHHHHHHHHHHHHHHHHHH
Confidence 456788888889999999999975 55 58999999999999988653
No 13
>PRK10655 potE putrescine transporter; Provisional
Probab=84.72 E-value=0.63 Score=33.61 Aligned_cols=46 Identities=11% Similarity=0.006 Sum_probs=37.7
Q ss_pred hhcccccceeeehhhHHhCCCCC-CCCCccchhhhHHHHHHHHHHHHHhh
Q psy16922 5 IEKNENLLTSKIVSLENNMKQPA-DYRKPCGVFNIGMVFITCLYGFTGLV 53 (75)
Q Consensus 5 ~~~~~~~g~~vv~~i~~~Mk~p~-~f~~~~~vl~~s~~i~~~ly~~~G~~ 53 (75)
...+++.|.-....+-.|+|||+ +.| +.+..+..++.++|++....
T Consensus 197 ~~~~af~G~e~~~~~a~E~k~P~r~iP---rAi~~~~~~~~~~Y~l~~~~ 243 (438)
T PRK10655 197 MTLWAFLGLESACANSDAVENPERNVP---IAVLGGTLGAAVIYIVSTNV 243 (438)
T ss_pred HHHHHHhhhhhhhhhHHHhhCcccccc---HHHHHHHHHHHHHHHHHHHH
Confidence 45678888888999999999997 455 59999999999999886543
No 14
>PRK10435 cadB lysine/cadaverine antiporter; Provisional
Probab=83.87 E-value=0.65 Score=33.73 Aligned_cols=46 Identities=11% Similarity=-0.072 Sum_probs=37.5
Q ss_pred hcccccceeeehhhHHhCCCCC-CCCCccchhhhHHHHHHHHHHHHHhhh
Q psy16922 6 EKNENLLTSKIVSLENNMKQPA-DYRKPCGVFNIGMVFITCLYGFTGLVG 54 (75)
Q Consensus 6 ~~~~~~g~~vv~~i~~~Mk~p~-~f~~~~~vl~~s~~i~~~ly~~~G~~G 54 (75)
..++|.|.-.....-.|+|||+ +.|| .+..+..++.++|++....-
T Consensus 196 ~~faf~G~E~~~~~a~E~knP~r~iPr---Ai~~~~~iv~ilYil~~~~~ 242 (435)
T PRK10435 196 CLWAFVGVESAAVSTGMVKNPKRTVPL---ATMLGTGLAGIIYIAATQVI 242 (435)
T ss_pred HHHHHhhHHHHHHHHHHhhCccccccH---HHHHHHHHHHHHHHHHHHHH
Confidence 4567778888888999999995 5665 89999999999999886643
No 15
>KOG1287|consensus
Probab=83.71 E-value=0.88 Score=34.55 Aligned_cols=46 Identities=11% Similarity=0.057 Sum_probs=37.2
Q ss_pred cccccceeeehhhHHhCCCCCCCCCccchhhhHHHHHHHHHHHHHhhh
Q psy16922 7 KNENLLTSKIVSLENNMKQPADYRKPCGVFNIGMVFITCLYGFTGLVG 54 (75)
Q Consensus 7 ~~~~~g~~vv~~i~~~Mk~p~~f~~~~~vl~~s~~i~~~ly~~~G~~G 54 (75)
-++|.|--.+-.+-.|+|||+| ..|+++..++.++++.|+++-+..
T Consensus 214 lfa~~GWd~lN~vteEiknP~k--tLP~Ai~isi~lvt~iYil~NvAy 259 (479)
T KOG1287|consen 214 LFAFSGWDYLNYVTEEIKNPRR--TLPRAILISIPLVTVIYVLVNVAY 259 (479)
T ss_pred hhcccCchhhccchHhhcCccc--cchHHHHHhhHHHHHHHHHhHhhe
Confidence 3677888888888999999953 344699999999999999986643
No 16
>TIGR00909 2A0306 amino acid transporter.
Probab=81.69 E-value=0.98 Score=32.38 Aligned_cols=45 Identities=18% Similarity=0.221 Sum_probs=36.0
Q ss_pred hcccccceeeehhhHHhCCCCC-CCCCccchhhhHHHHHHHHHHHHHhh
Q psy16922 6 EKNENLLTSKIVSLENNMKQPA-DYRKPCGVFNIGMVFITCLYGFTGLV 53 (75)
Q Consensus 6 ~~~~~~g~~vv~~i~~~Mk~p~-~f~~~~~vl~~s~~i~~~ly~~~G~~ 53 (75)
..+++.|.-.....-.|+|||+ +.| +.+..++.++.++|+.+...
T Consensus 204 ~~~af~G~e~~~~~~~E~~~p~r~ip---~ai~~~~~~~~v~Yil~~~~ 249 (429)
T TIGR00909 204 VFFAFIGFEAISTAAEEVKNPERDIP---KAIILSLIVVTLLYVLVAAV 249 (429)
T ss_pred HHHHHhhHHHHHhhHHhccCcccccc---HHHHHHHHHHHHHHHHHHHH
Confidence 4567777777888899999995 455 49999999999999988643
No 17
>COG0531 PotE Amino acid transporters [Amino acid transport and metabolism]
Probab=81.50 E-value=1 Score=32.22 Aligned_cols=53 Identities=17% Similarity=0.132 Sum_probs=40.4
Q ss_pred hhcccccceeeehhhHHhCCCCC-CCCCccchhhhHHHHHHHHHHHHHhhhHhhccc
Q psy16922 5 IEKNENLLTSKIVSLENNMKQPA-DYRKPCGVFNIGMVFITCLYGFTGLVGYMKYGA 60 (75)
Q Consensus 5 ~~~~~~~g~~vv~~i~~~Mk~p~-~f~~~~~vl~~s~~i~~~ly~~~G~~GYl~fG~ 60 (75)
...+++.|.....+.-+|+|||+ +.| +.+..++.++.++|+.....--...++
T Consensus 209 ~~~~~f~G~e~~~~~a~E~knp~r~ip---~aii~~~~~~~~~y~~~~~~~~~~~~~ 262 (466)
T COG0531 209 LAFFAFTGFEAIATLAEEVKNPKRTIP---RAIILSLLIVLILYILGALVIVGVLPA 262 (466)
T ss_pred HHHHHhhcHHHHHHHHHHhcCcccccc---HHHHHHHHHHHHHHHHHHHHHHhCccH
Confidence 34567888888888999999995 445 488888899999999887655544444
No 18
>PRK11357 frlA putative fructoselysine transporter; Provisional
Probab=81.46 E-value=0.92 Score=32.89 Aligned_cols=45 Identities=13% Similarity=0.180 Sum_probs=37.3
Q ss_pred hhcccccceeeehhhHHhCCCCCC-CCCccchhhhHHHHHHHHHHHHHh
Q psy16922 5 IEKNENLLTSKIVSLENNMKQPAD-YRKPCGVFNIGMVFITCLYGFTGL 52 (75)
Q Consensus 5 ~~~~~~~g~~vv~~i~~~Mk~p~~-f~~~~~vl~~s~~i~~~ly~~~G~ 52 (75)
...++|.|.-.....-.|+|||+| .| +.+..++.+++++|++...
T Consensus 203 ~~~~af~G~e~~~~~a~E~k~P~r~iP---~Ai~~~~~i~~~~Y~l~~~ 248 (445)
T PRK11357 203 ATSWSYTGMASICYMTGEIKNPGKTMP---RALIGSCLLVLVLYTLLAL 248 (445)
T ss_pred HHHHHHhhHHHHHhhHHHhcCccccch---HHHHHHHHHHHHHHHHHHH
Confidence 346788888889999999999974 45 5999999999999988755
No 19
>TIGR00911 2A0308 L-type amino acid transporter.
Probab=80.63 E-value=0.79 Score=33.86 Aligned_cols=45 Identities=16% Similarity=0.085 Sum_probs=36.6
Q ss_pred hcccccceeeehhhHHhCCCCCC-CCCccchhhhHHHHHHHHHHHHHhh
Q psy16922 6 EKNENLLTSKIVSLENNMKQPAD-YRKPCGVFNIGMVFITCLYGFTGLV 53 (75)
Q Consensus 6 ~~~~~~g~~vv~~i~~~Mk~p~~-f~~~~~vl~~s~~i~~~ly~~~G~~ 53 (75)
..++|.|.-.....-.|+|||++ .| +.+..+..++.++|+++...
T Consensus 244 ~~~af~G~e~~~~~a~E~knP~r~iP---rAi~~s~~~v~~~Y~l~~~a 289 (501)
T TIGR00911 244 GIWAYGGWNYLNFVTEEVKNPYRTLP---IAIIISMPIVTFIYVLTNIA 289 (501)
T ss_pred HHHHHHhHHHHhhhHHHhcCchhhhH---HHHHHHHHHHHHHHHHHHHH
Confidence 45677888888889999999964 55 49999999999999998543
No 20
>TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter. Lowered cutoffs from 1000/500 to 800/300, promoted from subfamily to equivalog, and put into a Genome Property DHH 9/1/2009
Probab=79.92 E-value=1.1 Score=33.42 Aligned_cols=42 Identities=21% Similarity=0.309 Sum_probs=32.1
Q ss_pred cccccceeeehhhHHhCCCCC-CCCCccchhhhHHHHHHHHHHHHH
Q psy16922 7 KNENLLTSKIVSLENNMKQPA-DYRKPCGVFNIGMVFITCLYGFTG 51 (75)
Q Consensus 7 ~~~~~g~~vv~~i~~~Mk~p~-~f~~~~~vl~~s~~i~~~ly~~~G 51 (75)
.++|.|.-.....-.|+|||+ ++|| .+..+..++.++|....
T Consensus 204 ~faf~G~E~~a~~a~E~knP~r~~Pr---Ai~~~~i~~~~l~~l~~ 246 (507)
T TIGR00910 204 IGAYMGVEASASHINELENPGRDYPL---AMILLMIAAICLDAIGG 246 (507)
T ss_pred HHHHhcHHHHHHHHHHccCCcccccH---HHHHHHHHHHHHHHHHH
Confidence 456777777888899999996 4665 88888888888887543
No 21
>PRK10644 arginine:agmatin antiporter; Provisional
Probab=79.81 E-value=0.91 Score=32.98 Aligned_cols=46 Identities=9% Similarity=0.023 Sum_probs=37.6
Q ss_pred hhcccccceeeehhhHHhCCCCC-CCCCccchhhhHHHHHHHHHHHHHhh
Q psy16922 5 IEKNENLLTSKIVSLENNMKQPA-DYRKPCGVFNIGMVFITCLYGFTGLV 53 (75)
Q Consensus 5 ~~~~~~~g~~vv~~i~~~Mk~p~-~f~~~~~vl~~s~~i~~~ly~~~G~~ 53 (75)
...++|.|.-.....-.|+|||+ +.| +.+..+..++.++|+++...
T Consensus 199 ~~~~af~G~e~~~~~aeE~k~P~r~iP---rai~~s~~i~~v~Y~l~~~~ 245 (445)
T PRK10644 199 VTLWSFIGVESASVAAGVVKNPKRNVP---IATIGGVLIAAVCYVLSSTA 245 (445)
T ss_pred HHHHHHHhHHHHHHHHHHhhCcccchh---HHHHHHHHHHHHHHHHHHHH
Confidence 34577888888889999999996 455 49999999999999988664
No 22
>TIGR03813 put_Glu_GABA_T putative glutamate/gamma-aminobutyrate antiporter. Members of this protein family are putative putative glutamate/gamma-aminobutyrate antiporters. Each member of the seed alignment is found adjacent to a glutamate decarboxylase, which converts glutamate (Glu) to gamma-aminobutyrate (GABA). However, the majority belong to genome contexts with a glutaminase (converts Gln to Glu) as well as the decarboxylase that converts Glu to GABA. The specificity of the transporter remains uncertain.
Probab=78.17 E-value=1.8 Score=31.73 Aligned_cols=43 Identities=9% Similarity=-0.015 Sum_probs=34.2
Q ss_pred ccccceeeehhhHHhCCCCCC-CCCccchhhhHHHHHHHHHHHHHhh
Q psy16922 8 NENLLTSKIVSLENNMKQPAD-YRKPCGVFNIGMVFITCLYGFTGLV 53 (75)
Q Consensus 8 ~~~~g~~vv~~i~~~Mk~p~~-f~~~~~vl~~s~~i~~~ly~~~G~~ 53 (75)
++|.|.-.....-.|+|||++ .| +.+..+..++.++|+.....
T Consensus 205 ~af~G~e~~~~~a~E~knP~r~iP---rAi~~~~~~~~~~y~l~~~~ 248 (474)
T TIGR03813 205 LFYAGMEMNAVHVKDVDNPDKNYP---IAILIAALGTVLIFVLGTLA 248 (474)
T ss_pred HHHhchhHhHHHHHhccCcccchh---HHHHHHHHHHHHHHHHHHHH
Confidence 567777778888899999964 55 48999999999999876543
No 23
>PF02468 PsbN: Photosystem II reaction centre N protein (psbN); InterPro: IPR003398 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbN found in PSII. PsbN may have a role in PSII stability, however its actual function unknown. PsbN does not appear to be essential for photoautotrophic growth or normal PSII function.; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009539 photosystem II reaction center, 0016020 membrane
Probab=77.09 E-value=3.7 Score=21.40 Aligned_cols=29 Identities=17% Similarity=0.345 Sum_probs=21.0
Q ss_pred hhhhHHHHHHHHHHHHHhhhHhhcccccc
Q psy16922 35 VFNIGMVFITCLYGFTGLVGYMKYGAATQ 63 (75)
Q Consensus 35 vl~~s~~i~~~ly~~~G~~GYl~fG~~v~ 63 (75)
...+++.+..++..++|.--|.+||+..+
T Consensus 4 a~~~~i~i~~~lv~~Tgy~iYtaFGppSk 32 (43)
T PF02468_consen 4 ATVLAIFISCLLVSITGYAIYTAFGPPSK 32 (43)
T ss_pred eeeHHHHHHHHHHHHHhhhhhheeCCCcc
Confidence 34556677777777788888999997543
No 24
>PRK11387 S-methylmethionine transporter; Provisional
Probab=75.85 E-value=0.95 Score=33.22 Aligned_cols=45 Identities=16% Similarity=-0.007 Sum_probs=35.9
Q ss_pred hcccccceeeehhhHHhCCCCCC-CCCccchhhhHHHHHHHHHHHHHhh
Q psy16922 6 EKNENLLTSKIVSLENNMKQPAD-YRKPCGVFNIGMVFITCLYGFTGLV 53 (75)
Q Consensus 6 ~~~~~~g~~vv~~i~~~Mk~p~~-f~~~~~vl~~s~~i~~~ly~~~G~~ 53 (75)
..++|.|.-.....-.|+|||++ .| +.+..+..++.++|+.....
T Consensus 215 ~~faf~G~e~~~~~a~E~knP~r~iP---rAi~~~~~~~~~~y~~~~~~ 260 (471)
T PRK11387 215 VNFAFSGTELIGIAAGETENPAKVIP---VAIRTTIARLVIFFVGTVLV 260 (471)
T ss_pred HHHHHcCHHHHHHHHHHhcChhhHHH---HHHHHHHHHHHHHHHHHHHH
Confidence 45778888888999999999974 44 47888888888888887653
No 25
>PF13520 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3GI8_C 3GIA_A 3GI9_C 3OB6_A 3L1L_A 3LRC_D 3LRB_B 4DJK_A 4DJI_A ....
Probab=75.84 E-value=1.1 Score=31.97 Aligned_cols=52 Identities=12% Similarity=0.067 Sum_probs=40.5
Q ss_pred hhcccccceeeehhhHHhCCCCCCCCCccchhhhHHHHHHHHHHHHHhhhHhhccc
Q psy16922 5 IEKNENLLTSKIVSLENNMKQPADYRKPCGVFNIGMVFITCLYGFTGLVGYMKYGA 60 (75)
Q Consensus 5 ~~~~~~~g~~vv~~i~~~Mk~p~~f~~~~~vl~~s~~i~~~ly~~~G~~GYl~fG~ 60 (75)
...+++.|.-.....-+|+|+ ++.+| .+..++.++.++|+.....-....++
T Consensus 196 ~~~~~~~G~e~~~~~~~E~k~-k~ip~---ai~~~~~~~~i~y~l~~~~~~~~~~~ 247 (426)
T PF13520_consen 196 VAFFAFSGFEAIASLAEENKN-KTIPR---AIIISIIIVAIIYILFSIALLGALPD 247 (426)
T ss_dssp HHGGGGTTTTHHHHGGGGSSS-HHHHH---HHHHHHHHHHHHHHHHHHHHHTTSTH
T ss_pred HHHhhcccccccccccccccc-hhhee---ecccchhHHHHHHhhhhheeeecccc
Confidence 356888899999999999998 45664 99999999999999986544444433
No 26
>TIGR03810 arg_ornith_anti arginine/ornithine antiporter. Members of this protein family are the arginine/ornithine antiporter, ArcD. This exchanger of ornithine for arginine occurs in a system with arginine deiminase, ornithine carbamoyltransferase, and carbamate kinase, with together turn arginine to ornithine with the generation of ATP and release of CO2.
Probab=73.73 E-value=2.3 Score=31.18 Aligned_cols=46 Identities=15% Similarity=0.193 Sum_probs=33.4
Q ss_pred cccccceeeehhhHHhCCCCCCCCCccchhhhHHHHHHHHHHHHHhhhH
Q psy16922 7 KNENLLTSKIVSLENNMKQPADYRKPCGVFNIGMVFITCLYGFTGLVGY 55 (75)
Q Consensus 7 ~~~~~g~~vv~~i~~~Mk~p~~f~~~~~vl~~s~~i~~~ly~~~G~~GY 55 (75)
.++|.|.-....+-.|.|++++.|| .+..+..+++++|+.+.+..+
T Consensus 205 ~~~f~G~e~~~~~a~e~k~~k~ip~---ai~~~~~~v~~lY~l~~~~~~ 250 (468)
T TIGR03810 205 VWVFIGIEGASMLSARAEKRSDVGK---ATVIGLIGVLAIYVLVSVLSY 250 (468)
T ss_pred HHHHHhHhHHhhhHhhccCcccchH---HHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555566678888766765 889999999999998876544
No 27
>PRK10197 gamma-aminobutyrate transporter; Provisional
Probab=73.58 E-value=1.4 Score=32.21 Aligned_cols=46 Identities=13% Similarity=0.021 Sum_probs=35.5
Q ss_pred hhcccccceeeehhhHHhCCCCCC-CCCccchhhhHHHHHHHHHHHHHhh
Q psy16922 5 IEKNENLLTSKIVSLENNMKQPAD-YRKPCGVFNIGMVFITCLYGFTGLV 53 (75)
Q Consensus 5 ~~~~~~~g~~vv~~i~~~Mk~p~~-f~~~~~vl~~s~~i~~~ly~~~G~~ 53 (75)
...++|.|.-.....-.|+|||+| .| +.+..++..+.++|+..-+.
T Consensus 189 ~~~faf~G~e~~~~~a~E~knP~r~iP---rai~~~~~~i~i~Yil~~~~ 235 (446)
T PRK10197 189 ITMFSFMGAEIVTIAAAESDTPEKHIV---RATNSVIWRISIFYLCSIFV 235 (446)
T ss_pred HHHHHHhCHHHHHHHHHHhcChhhhHH---HHHHHHHHHHHHHHHHHHHH
Confidence 456788888888899999999974 54 47777888888888876443
No 28
>PF07423 DUF1510: Protein of unknown function (DUF1510); InterPro: IPR009988 This family consists of several hypothetical bacterial proteins of around 200 residues in length. The function of this family is unknown.
Probab=73.49 E-value=1.6 Score=29.87 Aligned_cols=32 Identities=19% Similarity=0.272 Sum_probs=20.4
Q ss_pred CCCccchhhhHHHHHHHHHHHHHhhhHhhccccc
Q psy16922 29 YRKPCGVFNIGMVFITCLYGFTGLVGYMKYGAAT 62 (75)
Q Consensus 29 f~~~~~vl~~s~~i~~~ly~~~G~~GYl~fG~~v 62 (75)
.+|-.++|++++.++++|-++++ ..|-||++.
T Consensus 9 rRK~N~iLNiaI~IV~lLIiiva--~~lf~~~~~ 40 (217)
T PF07423_consen 9 RRKTNKILNIAIGIVSLLIIIVA--YQLFFGGDD 40 (217)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHh--hhheecCCC
Confidence 33444689988888876555554 466665643
No 29
>TIGR03428 ureacarb_perm permease, urea carboxylase system. A number of bacteria obtain nitrogen by biotin- and ATP-dependent urea degradation system distinct from urease. The two characterized proteins of this system are the enzymes urea carboxylase and allophanate hydrolase, but other, uncharacterized proteins co-occur as genes encoded nearby in multiple organisms. This family includes predicted permeases of the amino acid permease family, likely to transport either urea or a compound from which urea is derived. It is found so far only Actinobacteria, whereas a number of other species with the urea carboxylase have an adjacent ABC transporter operon.
Probab=70.47 E-value=5.1 Score=29.42 Aligned_cols=44 Identities=9% Similarity=-0.054 Sum_probs=32.7
Q ss_pred hhcccccceeeehhhHHhCCCCCC-CCCccchhhhHHHHHHHHHHHHH
Q psy16922 5 IEKNENLLTSKIVSLENNMKQPAD-YRKPCGVFNIGMVFITCLYGFTG 51 (75)
Q Consensus 5 ~~~~~~~g~~vv~~i~~~Mk~p~~-f~~~~~vl~~s~~i~~~ly~~~G 51 (75)
+..+++.|.-....+-.|+|||++ .| +.+..+..++.++|...-
T Consensus 221 ~~~~~f~G~e~~~~~aeE~knP~r~iP---rai~~s~~i~~~~~~~~~ 265 (475)
T TIGR03428 221 MAAYVMVGFGSAGELSEETKNPRRVAP---RTILTALSVSALGGGLMI 265 (475)
T ss_pred HHHHHhcCcchHHHHHHHhcCcchhhh---HHHHHHHHHHHHHHHHHH
Confidence 456788899999999999999964 44 477778777766554443
No 30
>PRK15238 inner membrane transporter YjeM; Provisional
Probab=70.02 E-value=3 Score=30.86 Aligned_cols=44 Identities=11% Similarity=0.104 Sum_probs=34.9
Q ss_pred hcccccceeeehhhHHhCCCCC-CCCCccchhhhHHHHHHHHHHHHHh
Q psy16922 6 EKNENLLTSKIVSLENNMKQPA-DYRKPCGVFNIGMVFITCLYGFTGL 52 (75)
Q Consensus 6 ~~~~~~g~~vv~~i~~~Mk~p~-~f~~~~~vl~~s~~i~~~ly~~~G~ 52 (75)
+.+++.|.-.....-.|+|||+ +.| +.+..+...+.++|.+..+
T Consensus 220 ~~~~f~G~e~~~~~a~E~~~p~~~~p---~ai~~~~~~~~~~y~l~~~ 264 (496)
T PRK15238 220 AIFAYGGIEAVGGLVDKTENPEKNFP---KGIIIAAIVISIGYSLAIF 264 (496)
T ss_pred HHHHHHhHHHHHHHHHhccCCCcccc---HHHHHHHHHHHHHHHHHHH
Confidence 4577778888888999999996 455 4888899988899887643
No 31
>PRK13183 psbN photosystem II reaction center protein N; Provisional
Probab=69.83 E-value=4.8 Score=21.26 Aligned_cols=29 Identities=17% Similarity=0.506 Sum_probs=21.2
Q ss_pred hhhhHHHHHHHHHHHHHhhhHhhcccccc
Q psy16922 35 VFNIGMVFITCLYGFTGLVGYMKYGAATQ 63 (75)
Q Consensus 35 vl~~s~~i~~~ly~~~G~~GYl~fG~~v~ 63 (75)
...+++.+..++..++|.--|.+||+..+
T Consensus 7 A~~~~i~i~~lL~~~TgyaiYtaFGppSk 35 (46)
T PRK13183 7 ALSLAITILAILLALTGFGIYTAFGPPSK 35 (46)
T ss_pred hHHHHHHHHHHHHHHhhheeeeccCCccc
Confidence 45566677777777788888899997543
No 32
>CHL00020 psbN photosystem II protein N
Probab=68.97 E-value=4.6 Score=21.04 Aligned_cols=29 Identities=21% Similarity=0.396 Sum_probs=21.0
Q ss_pred hhhhHHHHHHHHHHHHHhhhHhhcccccc
Q psy16922 35 VFNIGMVFITCLYGFTGLVGYMKYGAATQ 63 (75)
Q Consensus 35 vl~~s~~i~~~ly~~~G~~GYl~fG~~v~ 63 (75)
...+++.+..++..++|.--|.+||+..+
T Consensus 4 A~~~~i~i~~ll~~~Tgy~iYtaFGppSk 32 (43)
T CHL00020 4 ATLVAIFISGLLVSFTGYALYTAFGQPSK 32 (43)
T ss_pred hhhHHHHHHHHHHHhhheeeeeccCCchh
Confidence 44556677777777788888899997543
No 33
>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family. This family includes several families of antiporters that, rather commonly, are encoded next to decarboxylases that convert one of the antiporter substrates into the other. This arrangement allows a cycle that can remove proteins from the cytoplasm and thereby protect against acidic conditions.
Probab=68.36 E-value=2.6 Score=30.94 Aligned_cols=45 Identities=13% Similarity=0.024 Sum_probs=33.7
Q ss_pred hcccccceeeehhhHHhCCCCCCCCCccchhhhHHHHHHHHHHHHHhh
Q psy16922 6 EKNENLLTSKIVSLENNMKQPADYRKPCGVFNIGMVFITCLYGFTGLV 53 (75)
Q Consensus 6 ~~~~~~g~~vv~~i~~~Mk~p~~f~~~~~vl~~s~~i~~~ly~~~G~~ 53 (75)
..++|.|.-.....-.|+||+++.| +.+..+..++.++|++....
T Consensus 208 ~~~af~G~e~~~~~a~E~k~~r~iP---rai~~~~~i~~~~Yil~~~~ 252 (473)
T TIGR00905 208 TLWVFIGIEGAVVSSGRAKNKSDVG---KATVLGTLGALVIYILITLL 252 (473)
T ss_pred HHHHHHhHHHHHHHHHHHhccccch---HHHHHHHHHHHHHHHHHHHH
Confidence 3455666666667778999955566 49999999999999887654
No 34
>PRK15049 L-asparagine permease; Provisional
Probab=65.23 E-value=2.2 Score=31.83 Aligned_cols=47 Identities=13% Similarity=-0.046 Sum_probs=35.9
Q ss_pred hhhcccccceeeehhhHHhCCCCCC-CCCccchhhhHHHHHHHHHHHHHhh
Q psy16922 4 QIEKNENLLTSKIVSLENNMKQPAD-YRKPCGVFNIGMVFITCLYGFTGLV 53 (75)
Q Consensus 4 ~~~~~~~~g~~vv~~i~~~Mk~p~~-f~~~~~vl~~s~~i~~~ly~~~G~~ 53 (75)
+...++|.|.-.+...-.|+|||++ .| +.+..++..+.++|+.....
T Consensus 227 ~~~~faf~G~e~i~~~aeE~knP~r~iP---rAi~~~~~~i~~~yi~~~~~ 274 (499)
T PRK15049 227 QGVVFAFASIEMVGTAAGECKDPQTMVP---KAINSVIWRIGLFYVGSVVL 274 (499)
T ss_pred HHHHHHHhhHHHHHHHHHHhcChhhHHH---HHHHHHHHHHHHHHHHHHHH
Confidence 3467888888889999999999975 55 47777777777777776543
No 35
>TIGR00913 2A0310 amino acid permease (yeast).
Probab=64.87 E-value=2.8 Score=30.61 Aligned_cols=44 Identities=11% Similarity=-0.058 Sum_probs=35.2
Q ss_pred hcccccceeeehhhHHhCCCCCC-CCCccchhhhHHHHHHHHHHHHHh
Q psy16922 6 EKNENLLTSKIVSLENNMKQPAD-YRKPCGVFNIGMVFITCLYGFTGL 52 (75)
Q Consensus 6 ~~~~~~g~~vv~~i~~~Mk~p~~-f~~~~~vl~~s~~i~~~ly~~~G~ 52 (75)
..++|.|.-.....-.|+|||++ .| +.+..+..++.++|+....
T Consensus 206 ~~~af~G~e~~~~~a~E~knP~r~iP---rai~~~~~~~~~~Y~l~~~ 250 (478)
T TIGR00913 206 AAFSFGGTELVALTAGEAANPRKSIP---RAAKRTFWRILVFYILTLF 250 (478)
T ss_pred HHhhhccHHHHHHHHHhhcChhhHHH---HHHHHHHHHHHHHHHHHHH
Confidence 45777888888889999999963 45 4888899999999998753
No 36
>PRK11049 D-alanine/D-serine/glycine permease; Provisional
Probab=64.32 E-value=2.4 Score=31.19 Aligned_cols=45 Identities=16% Similarity=0.117 Sum_probs=32.6
Q ss_pred hcccccceeeehhhHHhCCCCCC-CCCccchhhhHHHHHHHHHHHHHhh
Q psy16922 6 EKNENLLTSKIVSLENNMKQPAD-YRKPCGVFNIGMVFITCLYGFTGLV 53 (75)
Q Consensus 6 ~~~~~~g~~vv~~i~~~Mk~p~~-f~~~~~vl~~s~~i~~~ly~~~G~~ 53 (75)
..++|.|.-.....-.|+|||++ .|| .+..+...+.++|.+....
T Consensus 220 ~~~af~G~e~~~~~a~E~knP~r~iPr---ai~~~~~~~~~~y~l~~~~ 265 (469)
T PRK11049 220 AVFAFVGIELVGTTAAETKDPEKSLPR---AINSIPIRIIMFYVFALIV 265 (469)
T ss_pred HHHHHhcHHHHHHHHHHhcCHhhHHHH---HHHHHHHHHHHHHHHHHHH
Confidence 46777888888899999999974 453 6666666677777766543
No 37
>PRK10249 phenylalanine transporter; Provisional
Probab=63.88 E-value=2.8 Score=30.75 Aligned_cols=43 Identities=12% Similarity=-0.160 Sum_probs=33.7
Q ss_pred hcccccceeeehhhHHhCCCCCC-CCCccchhhhHHHHHHHHHHHHH
Q psy16922 6 EKNENLLTSKIVSLENNMKQPAD-YRKPCGVFNIGMVFITCLYGFTG 51 (75)
Q Consensus 6 ~~~~~~g~~vv~~i~~~Mk~p~~-f~~~~~vl~~s~~i~~~ly~~~G 51 (75)
..++|.|.-.....-.|+|||++ .| +.+..+...+.++|+..-
T Consensus 218 ~~~af~G~e~~~~~a~E~~~P~k~iP---rai~~~~~~~~~~y~~~~ 261 (458)
T PRK10249 218 IMFSFGGLELIGITAAEARDPEKSIP---KAVNQVVYRILLFYIGSL 261 (458)
T ss_pred HHHHHcCHHHHHHHHHHhcCHhhHHH---HHHHHHHHHHHHHHHHHH
Confidence 45677888888889999999975 44 488888888888887653
No 38
>TIGR00908 2A0305 ethanolamine permease. The three genes used as the seed for this model (from Burkholderia pseudomallei, Pseudomonas aeruginosa and Clostridium acetobutylicum are all adjacent to genes for the catabolism of ethanolamine. Most if not all of the hits to this model have a similar arrangement of genes. This group is a member of the Amino Acid-Polyamine-Organocation (APC) Superfamily.
Probab=60.66 E-value=5.6 Score=28.77 Aligned_cols=43 Identities=9% Similarity=-0.096 Sum_probs=32.6
Q ss_pred hcccccceeeehhhHHhCCCCCC-CCCccchhhhHHHHHHHHHHHHH
Q psy16922 6 EKNENLLTSKIVSLENNMKQPAD-YRKPCGVFNIGMVFITCLYGFTG 51 (75)
Q Consensus 6 ~~~~~~g~~vv~~i~~~Mk~p~~-f~~~~~vl~~s~~i~~~ly~~~G 51 (75)
+.++|.|.-.....-.|+|||++ .| +.+..+..++..+|+.+-
T Consensus 200 ~~~af~G~e~~~~~aeE~k~P~r~ip---rai~~s~~~~~~~~~~~~ 243 (442)
T TIGR00908 200 AIWFFLAVEGVAMAAEETKNPKRDIP---RGLIGAILTLLALAAGIL 243 (442)
T ss_pred HHHHHHHHHHHHHHHHHhcCcccccC---HHHHHHHHHHHHHHHHHH
Confidence 34667777777888899999964 55 488888888888887664
No 39
>TIGR01773 GABAperm gamma-aminobutyrate permease. GabP is highly homologous to amino acid permeases from B. subtilis, E. coli, as well as to other members of the amino acid permease family (pfam00324). A member of the APC (amine-polyamine-choline) transporter superfamily, GABA permease possesses a "consensus amphiphatic region" (CAR) found to be evolutionarily conserved within this transport family. This amphiphatic region is located between helix 8 and cytoplasmic loop 8-9, forming a potential channel domain and suggested to play a significant role in ligand recognition and translocation. Unique to GABA permeases, a conserved cysteine residue (CYS-300, E.coli) located at the beginning of the amphiphatic domain, has been determined to be critical for catalytic specificity.
Probab=60.15 E-value=3.4 Score=30.03 Aligned_cols=45 Identities=11% Similarity=-0.027 Sum_probs=33.5
Q ss_pred hhcccccceeeehhhHHhCCCCC-CCCCccchhhhHHHHHHHHHHHHHh
Q psy16922 5 IEKNENLLTSKIVSLENNMKQPA-DYRKPCGVFNIGMVFITCLYGFTGL 52 (75)
Q Consensus 5 ~~~~~~~g~~vv~~i~~~Mk~p~-~f~~~~~vl~~s~~i~~~ly~~~G~ 52 (75)
...++|.|.-....+-.|+|||+ +.| +.+..++..+..+|+..-.
T Consensus 209 ~~~~af~G~e~~~~~a~E~k~P~r~iP---rAi~~~~~~~~~~y~l~~~ 254 (452)
T TIGR01773 209 VTMFSFMGTEIVTIAAAESSNPIKSIT---RATNSVIWRIIVFYLGSIF 254 (452)
T ss_pred HHHHHhccHHHHhHHHHhhcChhhHHH---HHHHHHHHHHHHHHHHHHH
Confidence 35677788888888999999996 355 3666677777888887544
No 40
>PRK10580 proY putative proline-specific permease; Provisional
Probab=59.80 E-value=3.2 Score=30.28 Aligned_cols=44 Identities=16% Similarity=-0.052 Sum_probs=31.7
Q ss_pred hhcccccceeeehhhHHhCCCCCC-CCCccchhhhHHHHHHHHHHHHH
Q psy16922 5 IEKNENLLTSKIVSLENNMKQPAD-YRKPCGVFNIGMVFITCLYGFTG 51 (75)
Q Consensus 5 ~~~~~~~g~~vv~~i~~~Mk~p~~-f~~~~~vl~~s~~i~~~ly~~~G 51 (75)
...++|.|.-.....-.|+|||++ .|| .+..+...+.++|+...
T Consensus 207 ~~~fsf~G~e~~~~~a~E~knP~k~iPr---Ai~~~~~~~~~~y~~~~ 251 (457)
T PRK10580 207 MVMFAYGGIEIIGITAGEAKDPEKSIPR---AINSVPMRILVFYVGTL 251 (457)
T ss_pred HHHHHHhCHHHHHHHHHHhcChhhHHHH---HHHHHHHHHHHHHHHHH
Confidence 345777788888889999999975 443 66666666677776664
No 41
>PF00324 AA_permease: Amino acid permease; InterPro: IPR004841 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [], [], []. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. This domain is found in a wide variety of permeases, as well as several hypothetical proteins. ; GO: 0006810 transport, 0055085 transmembrane transport, 0016020 membrane
Probab=59.01 E-value=5.6 Score=29.12 Aligned_cols=55 Identities=13% Similarity=0.007 Sum_probs=41.0
Q ss_pred hhcccccceeeehhhHHhCCCCCCCCCccchhhhHHHHHHHHHHHHHhhhHhhcccc
Q psy16922 5 IEKNENLLTSKIVSLENNMKQPADYRKPCGVFNIGMVFITCLYGFTGLVGYMKYGAA 61 (75)
Q Consensus 5 ~~~~~~~g~~vv~~i~~~Mk~p~~f~~~~~vl~~s~~i~~~ly~~~G~~GYl~fG~~ 61 (75)
.+.+++.|.......-.|.|||+|= .++....++....++|+.....-=+..|.+
T Consensus 208 ~~~~af~G~e~~a~~a~E~k~P~k~--IPra~~~~~~~~~v~y~~~~~~~~~~~~~~ 262 (478)
T PF00324_consen 208 FAFFAFVGFESIAILAEEAKNPRKT--IPRATLLSVLRIGVFYVLTSYALTLAVPYD 262 (478)
T ss_pred hhhcccccccccccccccCCCchhh--hhhHhhhhhhhhhhhhhhhhhhcccccCcc
Confidence 4678889999999999999999732 235888888888888888765444444443
No 42
>TIGR00907 2A0304 amino acid permease (GABA permease).
Probab=57.70 E-value=12 Score=27.43 Aligned_cols=40 Identities=3% Similarity=-0.215 Sum_probs=29.2
Q ss_pred hcccccceeeehhhHHhCCCCCC-CCCccchhhhHHHHHHHHHH
Q psy16922 6 EKNENLLTSKIVSLENNMKQPAD-YRKPCGVFNIGMVFITCLYG 48 (75)
Q Consensus 6 ~~~~~~g~~vv~~i~~~Mk~p~~-f~~~~~vl~~s~~i~~~ly~ 48 (75)
..++|.|.-.....-.|+|||+| .| +.+..+..++.++++
T Consensus 226 ~~fsf~G~e~~~~~a~E~knP~r~iP---~Ai~~s~~i~~~~~~ 266 (482)
T TIGR00907 226 PAWSMTGYDGTAHMAEEIENPEVVGP---RAIIGAVAIGIVTGF 266 (482)
T ss_pred hHHHhcCcchhhHHHHhcCChhhhcC---HHHHHHHHHHHHHHH
Confidence 34788888889999999999964 44 477777766555433
No 43
>PRK10238 aromatic amino acid transporter; Provisional
Probab=57.03 E-value=4.4 Score=29.69 Aligned_cols=43 Identities=14% Similarity=-0.092 Sum_probs=31.7
Q ss_pred hhcccccceeeehhhHHhCCCCCC-CCCccchhhhHHHHHHHHHHHH
Q psy16922 5 IEKNENLLTSKIVSLENNMKQPAD-YRKPCGVFNIGMVFITCLYGFT 50 (75)
Q Consensus 5 ~~~~~~~g~~vv~~i~~~Mk~p~~-f~~~~~vl~~s~~i~~~ly~~~ 50 (75)
+..+++.|.-.....-.|+|||+| .|| .+..++..+.++|+..
T Consensus 208 ~~~~af~G~e~~~~~aeE~knP~r~iPr---Ai~~~~~~i~~~y~~~ 251 (456)
T PRK10238 208 IIMFSFGGLELVGITAAEADNPEQSIPK---ATNQVIYRILIFYIGS 251 (456)
T ss_pred HHHHHhcCHHHHHHHHHhhcChhhHHHH---HHHHHHHHHHHHHHHH
Confidence 456788888888899999999974 554 6666666666666554
No 44
>PF03222 Trp_Tyr_perm: Tryptophan/tyrosine permease family; InterPro: IPR018227 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [, , ]. Aromatic amino acids are concentrated in the cytoplasm of Escherichia coli by 4 distinct transport systems: a general aromatic amino acid permease, and a specific permease for each of the 3 types (Phe, Tyr and Trp) []. It has been shown [] that some permeases in E. coli and related bacteria are evolutionary related. These permeases are proteins of about 400 to 420 amino acids and are located in the cytoplasmic membrane and, like bacterial sugar/cation transporters, are thought to contain 12 transmembrane (TM) regions [] - hydropathy analysis, however, is inconclusive, suggesting the possibility of 10 to 12 membrane-spanning domains []. The best conserved domain is a stretch of 20 residues which seems to be located in a cytoplasmic loop between the first and second transmembrane region.
Probab=55.83 E-value=2.6 Score=30.77 Aligned_cols=42 Identities=17% Similarity=0.105 Sum_probs=32.6
Q ss_pred hcccccceeeehhhHHhCCC-CCCCCCccchhhhHHHHHHHHHHHH
Q psy16922 6 EKNENLLTSKIVSLENNMKQ-PADYRKPCGVFNIGMVFITCLYGFT 50 (75)
Q Consensus 6 ~~~~~~g~~vv~~i~~~Mk~-p~~f~~~~~vl~~s~~i~~~ly~~~ 50 (75)
..+++.-|.++|++.+.+++ +++.+ +++.++..+..++|+..
T Consensus 193 ~~~Sf~f~~ivPsl~~~~~~d~~k~~---~ai~~Gs~i~lv~yl~w 235 (394)
T PF03222_consen 193 LVFSFGFHNIVPSLVKYLGGDPKKIR---KAIIIGSLIPLVMYLLW 235 (394)
T ss_pred HHHHHHHHhhhHHHHHHhCccHHHHH---HHHHHHHHHHHHHHHHH
Confidence 45678889999999999984 45554 48888888888888765
No 45
>PRK10836 lysine transporter; Provisional
Probab=52.82 E-value=5 Score=29.66 Aligned_cols=45 Identities=18% Similarity=0.019 Sum_probs=36.1
Q ss_pred hcccccceeeehhhHHhCCCCCC-CCCccchhhhHHHHHHHHHHHHHhh
Q psy16922 6 EKNENLLTSKIVSLENNMKQPAD-YRKPCGVFNIGMVFITCLYGFTGLV 53 (75)
Q Consensus 6 ~~~~~~g~~vv~~i~~~Mk~p~~-f~~~~~vl~~s~~i~~~ly~~~G~~ 53 (75)
..++|.|.-.+...-.|+|||++ .| +.+..++..+.++|+.....
T Consensus 214 ~~faf~G~e~~~~~a~E~knP~r~iP---rAi~~~~~~v~~~Yvl~~~~ 259 (489)
T PRK10836 214 VGFSFQGTELIGIAAGESEDPAKNIP---RAVRQVFWRILLFYVFAILI 259 (489)
T ss_pred HHHHHccHHHHHHHHHHhcCHHHHHH---HHHHHHHHHHHHHHHHHHHH
Confidence 34788888888889999999964 44 48888899999999987543
No 46
>PF09163 Form-deh_trans: Formate dehydrogenase N, transmembrane; InterPro: IPR015246 The transmembrane domain of the beta subunit of formate dehydrogenase consists of a single transmembrane helix. This domain acts as a transmembrane anchor, allowing the conduction of electrons within the protein []. ; PDB: 1KQG_B 1KQF_B.
Probab=50.40 E-value=24 Score=18.36 Aligned_cols=33 Identities=15% Similarity=0.019 Sum_probs=19.2
Q ss_pred ccchhhhHHHHHHHHHHHHHhhhHhhccccccc
Q psy16922 32 PCGVFNIGMVFITCLYGFTGLVGYMKYGAATQG 64 (75)
Q Consensus 32 ~~~vl~~s~~i~~~ly~~~G~~GYl~fG~~v~~ 64 (75)
|.+++..--.+....-...+++=|++.|++..+
T Consensus 8 WKg~~Kpl~~~~~~~~~~~~~~Hyi~vGPn~v~ 40 (44)
T PF09163_consen 8 WKGVLKPLGAAGMGATAAAGFFHYITVGPNRVE 40 (44)
T ss_dssp HHTTHHHHHHHHHHHHHHHHHHHHHHH--B-S-
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCC
Confidence 335555555555555667788899999998654
No 47
>PF07136 DUF1385: Protein of unknown function (DUF1385); InterPro: IPR010787 This family contains a number of hypothetical bacterial proteins of unknown function approximately 300 residues in length. Some family members are predicted to be metal-dependent.
Probab=50.31 E-value=23 Score=24.63 Aligned_cols=46 Identities=17% Similarity=0.114 Sum_probs=28.6
Q ss_pred hhcccccceeeehhhHHhCCCCCCCCCccchhh-hHHHHHHHHHHHHH
Q psy16922 5 IEKNENLLTSKIVSLENNMKQPADYRKPCGVFN-IGMVFITCLYGFTG 51 (75)
Q Consensus 5 ~~~~~~~g~~vv~~i~~~Mk~p~~f~~~~~vl~-~s~~i~~~ly~~~G 51 (75)
-.++||| +|.=++++|-.|.+...++|..... +-+.+..++|.++|
T Consensus 116 K~I~~yE-~g~~Ltvenvrk~sr~HpRCGTsFl~~vl~vsI~vf~~~~ 162 (236)
T PF07136_consen 116 KVINCYE-AGEELTVENVRKYSRLHPRCGTSFLLIVLIVSILVFSFIG 162 (236)
T ss_pred hhHHhhc-CCCCCCHHHHHhcCCcCCCcchhHHHHHHHHHHHHHHHHh
Confidence 3578999 4555599999999887877655433 23333444444443
No 48
>PF03845 Spore_permease: Spore germination protein; InterPro: IPR004761 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [, , ]. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. Spore germination protein (amino acid permease) is involved in the response to the germinative mixture of L-asparagine, glucose, fructose and potassium ions (AFFK). These proteins could be amino acid transporters.; GO: 0009847 spore germination, 0016021 integral to membrane
Probab=48.15 E-value=6.3 Score=27.38 Aligned_cols=52 Identities=12% Similarity=0.020 Sum_probs=37.6
Q ss_pred ccccceeeehhhHHhCCCCCCCCCccchhhhHHHHHHHHHHHHHhhhHhhccccc
Q psy16922 8 NENLLTSKIVSLENNMKQPADYRKPCGVFNIGMVFITCLYGFTGLVGYMKYGAAT 62 (75)
Q Consensus 8 ~~~~g~~vv~~i~~~Mk~p~~f~~~~~vl~~s~~i~~~ly~~~G~~GYl~fG~~v 62 (75)
+.+.|.-++.-+...+++|++..| ....+..+...+|...-+..-..||.+.
T Consensus 186 ~~~~~~~~~l~~~p~~~~~~~~~k---~~~~~~~~~~~~~~~~~~~~i~vfG~~~ 237 (320)
T PF03845_consen 186 FPFGGIEILLFLFPFVKDKKKLKK---SLLIAILISGLFLLFIIFITIGVFGPEL 237 (320)
T ss_pred HHHHHHHHHHHHHHHcCCchHHHH---HHHHHHHHHHHHHHHHHHHHHHhcCHHH
Confidence 445566667778888899887764 7888888877777776666677777653
No 49
>COG3476 Tryptophan-rich sensory protein (mitochondrial benzodiazepine receptor homolog) [Signal transduction mechanisms]
Probab=46.89 E-value=33 Score=22.57 Aligned_cols=49 Identities=20% Similarity=0.362 Sum_probs=33.8
Q ss_pred cceeeehhhHHhCCCCCCCCCccchhhhHHH-HHHHHHHHHHhhhHhhccccccc
Q psy16922 11 LLTSKIVSLENNMKQPADYRKPCGVFNIGMV-FITCLYGFTGLVGYMKYGAATQG 64 (75)
Q Consensus 11 ~g~~vv~~i~~~Mk~p~~f~~~~~vl~~s~~-i~~~ly~~~G~~GYl~fG~~v~~ 64 (75)
-+....+.-|++.|+|. +. .-.+.+- +=+++|.+.|.-+|+.+-.+-..
T Consensus 25 ~~~~~~~~wy~~L~kP~-w~----pp~~~f~~vWtvLy~l~~iSa~lvW~~~~~~ 74 (161)
T COG3476 25 FISSRDPNWYNNLKKPF-WL----PPEWAFPPVWTVLYALIGISAYLVWEKGPGQ 74 (161)
T ss_pred HhccccHHHHHhccCCC-CC----ChHHHhhHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 34445556899999995 64 3444553 35788999999999988665433
No 50
>PF13253 DUF4044: Protein of unknown function (DUF4044)
Probab=46.10 E-value=10 Score=18.88 Aligned_cols=28 Identities=18% Similarity=0.077 Sum_probs=16.3
Q ss_pred CCCCCCCCccchhhhHHHHHHHHHHHHH
Q psy16922 24 KQPADYRKPCGVFNIGMVFITCLYGFTG 51 (75)
Q Consensus 24 k~p~~f~~~~~vl~~s~~i~~~ly~~~G 51 (75)
|+.+.|.|...++.|-|.+.++.=+..+
T Consensus 4 kkKS~fekiT~v~v~lM~i~tvg~v~~~ 31 (35)
T PF13253_consen 4 KKKSTFEKITMVVVWLMLILTVGSVVAS 31 (35)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556677655566666666665444443
No 51
>PRK10483 tryptophan permease; Provisional
Probab=44.81 E-value=7.8 Score=28.84 Aligned_cols=41 Identities=15% Similarity=0.122 Sum_probs=31.7
Q ss_pred cccccceeeehhhHHhCCC-CCCCCCccchhhhHHHHHHHHHHHH
Q psy16922 7 KNENLLTSKIVSLENNMKQ-PADYRKPCGVFNIGMVFITCLYGFT 50 (75)
Q Consensus 7 ~~~~~g~~vv~~i~~~Mk~-p~~f~~~~~vl~~s~~i~~~ly~~~ 50 (75)
..++.-|.++|++.+.+++ +++.+ +++..+..+-.++|+..
T Consensus 202 ~~SFgfh~iIPsl~~y~~~d~~kir---~~I~iGs~Iplv~yl~W 243 (414)
T PRK10483 202 LASFGYHGNVPSLMKYYGKDPKTIV---KCLVYGTLMALALYTIW 243 (414)
T ss_pred HhhccCCCcchHHHHHhCcCHHHHH---HHHHHHHHHHHHHHHHH
Confidence 4567778999999999885 34444 58999998888888874
No 52
>PF12729 4HB_MCP_1: Four helix bundle sensory module for signal transduction; InterPro: IPR024478 This entry represents a four-helix bundle that operates as a ubiquitous sensory module in prokaryotic signal-transduction, which is known as four-helix bundles methyl-accepting chemotaxis protein (4HB_MCP) domain. The 4HB_MCP is always found between two predicted transmembrane helices indicating that it detects only extracellular signals. In many cases the domain is associated with a cytoplasmic HAMP domain suggesting that most proteins carrying the bundle might share the mechanism of transmembrane signalling which is well-characterised in E coli chemoreceptors [].
Probab=44.55 E-value=24 Score=21.18 Aligned_cols=25 Identities=24% Similarity=0.413 Sum_probs=20.2
Q ss_pred hhhHHHHHHHHHHHHHhhhHhhccc
Q psy16922 36 FNIGMVFITCLYGFTGLVGYMKYGA 60 (75)
Q Consensus 36 l~~s~~i~~~ly~~~G~~GYl~fG~ 60 (75)
+..++.+++++.+++|++|+.....
T Consensus 8 L~~~f~~~~~l~~~~~~~~~~~l~~ 32 (181)
T PF12729_consen 8 LILGFGLIILLLLIVGIVGLYSLSQ 32 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6677888888899999998877654
No 53
>PLN03223 Polycystin cation channel protein; Provisional
Probab=41.59 E-value=26 Score=30.48 Aligned_cols=22 Identities=14% Similarity=0.301 Sum_probs=17.2
Q ss_pred HHHHHHHHHHhhhHhhcccccc
Q psy16922 42 FITCLYGFTGLVGYMKYGAATQ 63 (75)
Q Consensus 42 i~~~ly~~~G~~GYl~fG~~v~ 63 (75)
+.+++++.++.+||+.||....
T Consensus 1336 IF~IVF~AFAqLG~LLFGt~ve 1357 (1634)
T PLN03223 1336 IFGMVFVGYAFIGHVIFGNASV 1357 (1634)
T ss_pred HHHHHHHHHHHHHHHHhccCch
Confidence 4556677888899999998754
No 54
>PF08016 PKD_channel: Polycystin cation channel; InterPro: IPR013122 Polycystic kidney diseases (PKD) are disorders characterised by large numbers of cysts distributed throughout grossly-enlarged kidneys. Cyst development is associated with impairment of kidney function, and ultimately kidney failure and death []. Most cases of autosomal dominant PKD result from mutations in the PKD1 gene that cause premature protein termination. A second gene for autosomal dominant polycystic kidney disease has been identified by positional cloning []. The predicted 968-amino acid sequence of the PKD2 gene product (polycystin-2) contains 6 transmembrane domains, with intracellular N- and C-termini. Polycystin-2 shares some similarity with the family of voltage-activated calcium (and sodium) channels, and contains a potential calcium-binding domain. Polycystin-2 is strongly expressed in ovary, foetal and adult kidney, testis, and small intestine. Polycystin-1 requires the presence of this protein for stable expression and is believed to interact with it via its C terminus. All mutations between exons 1 and 11 result in a truncated polycystin-2 that lacks a calcium-binding EF-hand domain and the cytoplasmic domains required for the interaction of polycystin-2 with polycystin-1 []. PKD2, although clinically milder than PKD1, has a deleterious impact on life expectancy. This entry contains proteins belonging to the polycystin family including Mucolipin and Polycystin-1 and -2 (PKD1 and PKD2). The domain contains the cation channel region of PKD1 and PKD2 proteins. PKD1 and PKD2 may function through a common signalling pathway that is necessary for normal tubulogenesis. The PKD2 gene product has six transmembrane spans with intracellular amino- and carboxyl-termini []. Mucolipin is a cationic channel which probably plays a role in the endocytic pathway and in the control of membrane trafficking of proteins and lipids. It could play a major role in the calcium ion transport regulating lysosomal exocytosis [, , ].
Probab=40.23 E-value=37 Score=24.73 Aligned_cols=24 Identities=17% Similarity=0.438 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHhhhHhhcccccc
Q psy16922 40 MVFITCLYGFTGLVGYMKYGAATQ 63 (75)
Q Consensus 40 ~~i~~~ly~~~G~~GYl~fG~~v~ 63 (75)
+.+..++++.++.+||+.||+...
T Consensus 339 ~~~~~i~~~~fa~~g~l~fG~~~~ 362 (425)
T PF08016_consen 339 FVIFLIIFLAFAQAGYLLFGSYSE 362 (425)
T ss_pred HHHHHHHHHHHHHHHHHhhcCCcc
Confidence 345566678888999999998764
No 55
>KOG4404|consensus
Probab=39.28 E-value=37 Score=25.01 Aligned_cols=21 Identities=19% Similarity=0.273 Sum_probs=17.8
Q ss_pred hhhhHHHHHHHHHHHHHhhhH
Q psy16922 35 VFNIGMVFITCLYGFTGLVGY 55 (75)
Q Consensus 35 vl~~s~~i~~~ly~~~G~~GY 55 (75)
+-.++.++|++.|+++|...+
T Consensus 7 vR~l~Livct~tYLLvGAaVF 27 (350)
T KOG4404|consen 7 VRTLLLIVCTFTYLLVGAAVF 27 (350)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 566788999999999998766
No 56
>PF03073 TspO_MBR: TspO/MBR family; InterPro: IPR004307 Members of this group are involved in transmembrane signalling. In both prokaryotes and mitochondria they are localized to the outer membrane, and have been shown to bind and transport dicarboxylic tetrapyrrole intermediates of the haem biosynthetic pathway [, ]. They are associated with the major outer membrane porins (in prokaryotes) and with the voltage-dependent anion channel (in mitochondria) []. Rhodobacter sphaeroides TspO (previously CrtK) is involved in signal transduction, functioning as a negative regulator of the expression of some photosynthesis genes (PpsR/AppA repressor/antirepressor regulon). This down-regulation is believed to be in response to oxygen levels. TspO works through (or modulates) the PpsR/AppA system and acts upstream of the site of action of these regulatory proteins []. It has been suggested that the TspO regulatory pathway works by regulating the efflux of certain tetrapyrrole intermediates of the haem/bacteriochlorophyll biosynthetic pathways in response to the availability of molecular oxygen, thereby causing the accumulation of a biosynthetic intermediate that serves as a corepressor for the regulated genes []. A homologue of the TspO protein in Rhizobium meliloti (Sinorhizobium meliloti) is involved in regulating expression of the ndi locus in response to stress conditions []. There is evidence that the S. meliloti TspO acts through, or in addition to, the FixL regulatory system. In animals, the peripheral-type benzodiazepine receptor (PBR, MBR) is a mitochondrial protein (located in the outer mitochondrial membrane) characterised by its ability to bind with nanomolar affinity to a variety of benzodiazepine-like drugs, as well as to dicarboxylic tetrapyrrole intermediates of the haem biosynthetic pathway. Depending upon the tissue, it was shown to be involved in steroidogenesis, haem biosynthesis, apoptosis, cell growth and differentiation, mitochondrial respiratory control, and immune and stress response, but the precise function of the PBR remains unclear. The role of PBR in the regulation of cholesterol transport from the outer to the inner mitochondrial membrane, the rate-determining step in steroid biosynthesis, has been studied in detail. PBR is required for the binding, uptake and release, upon ligand activation, of the substrate cholesterol []. PBR forms a multimeric complex with the voltage-dependent anion channel (VDAC) [] and adenine nucleotide carrier []. Molecular modeling of PBR suggested that it might function as a channel for cholesterol. Indeed, cholesterol uptake and transport by bacterial cells was induced upon PBR expression. Mutagenesis studies identified a cholesterol recognition/interaction motif (CRAC) in the cytoplasmic C terminus of PBR [, ]. In complementation experiments, rat PBR (pk18) functionally substitutes for its homologue TspO in R. sphaeroides, negatively affecting transcription of specific photosynthesis genes []. This suggests that PBR may function as an oxygen sensor, transducing an oxygen-triggered signal leading to an adaptive cellular response. These observations suggest that fundamental aspects of this receptor and the downstream signal transduction pathway are conserved in bacteria and higher eukaryotic mitochondria. The alpha-3 subdivision of the purple bacteria is considered to be a likely source of the endosymbiont that ultimately gave rise to the mitochondrion. Therefore, it is possible that the mammalian PBR remains both evolutionarily and functionally related to the TspO of R. sphaeroides.; GO: 0016021 integral to membrane
Probab=38.54 E-value=65 Score=20.11 Aligned_cols=39 Identities=18% Similarity=0.340 Sum_probs=28.5
Q ss_pred hhhHHhCCCCCCCCCccchhhhHH-HHHHHHHHHHHhhhHhhccc
Q psy16922 17 VSLENNMKQPADYRKPCGVFNIGM-VFITCLYGFTGLVGYMKYGA 60 (75)
Q Consensus 17 ~~i~~~Mk~p~~f~~~~~vl~~s~-~i~~~ly~~~G~~GYl~fG~ 60 (75)
.+-|+++++|. +.. -.+.+ .+-+++|.++|..+|+.+-+
T Consensus 23 ~~wy~~L~kP~-~~P----p~~~f~~vW~~ly~l~g~a~~~v~~~ 62 (148)
T PF03073_consen 23 SEWYDSLKKPS-WTP----PGWVFGPVWTILYILMGIASYLVWRK 62 (148)
T ss_pred hHHHhhccCCC-CCC----cccHHHHHHHHHHHHHHHHHHhhHhc
Confidence 56789999997 432 33444 35677999999999988854
No 57
>PRK15132 tyrosine transporter TyrP; Provisional
Probab=36.81 E-value=14 Score=27.29 Aligned_cols=41 Identities=22% Similarity=0.144 Sum_probs=31.5
Q ss_pred cccccceeeehhhHHhCCCC-CCCCCccchhhhHHHHHHHHHHHH
Q psy16922 7 KNENLLTSKIVSLENNMKQP-ADYRKPCGVFNIGMVFITCLYGFT 50 (75)
Q Consensus 7 ~~~~~g~~vv~~i~~~Mk~p-~~f~~~~~vl~~s~~i~~~ly~~~ 50 (75)
.+++.-|.++|++.+.+++. ++.+ +++..+..+..++|+..
T Consensus 191 ~~SFgfh~iIpsl~~y~~~~~~~~~---k~i~~Gs~i~li~yl~W 232 (403)
T PRK15132 191 FTSFGFHGSVPSIVSYMGGNIRKLR---WVFIIGSAIPLVAYIFW 232 (403)
T ss_pred HHHhhCCcccHHHHHHhCcCHHHHH---HHHHHHHHHHHHHHHHH
Confidence 46788899999999998754 3444 48888888888877765
No 58
>PRK10746 putative transport protein YifK; Provisional
Probab=35.95 E-value=15 Score=27.09 Aligned_cols=44 Identities=16% Similarity=-0.022 Sum_probs=32.8
Q ss_pred hhcccccceeeehhhHHhCCCCC-CCCCccchhhhHHHHHHHHHHHHH
Q psy16922 5 IEKNENLLTSKIVSLENNMKQPA-DYRKPCGVFNIGMVFITCLYGFTG 51 (75)
Q Consensus 5 ~~~~~~~g~~vv~~i~~~Mk~p~-~f~~~~~vl~~s~~i~~~ly~~~G 51 (75)
+..++|.|.-.+...-.|+|||+ ..| +++..+...+.++|+...
T Consensus 208 ~~~faf~G~e~v~~~a~E~knP~k~iP---~Ai~~~~~~i~~~yv~~~ 252 (461)
T PRK10746 208 IVVASYQGVELIGITAGEAKNPQVTLR---SAVGKVLWRILIFYVGAI 252 (461)
T ss_pred HHHHHhcCHHHHHHHHHHhcChhhHHH---HHHHHHHHHHHHHHHHHH
Confidence 45677788888888999999996 444 477777777777777653
No 59
>PRK00968 tetrahydromethanopterin S-methyltransferase subunit D; Provisional
Probab=35.94 E-value=31 Score=24.01 Aligned_cols=20 Identities=10% Similarity=0.213 Sum_probs=13.3
Q ss_pred hCCCCCCCCCccchhhhHHHH
Q psy16922 22 NMKQPADYRKPCGVFNIGMVF 42 (75)
Q Consensus 22 ~Mk~p~~f~~~~~vl~~s~~i 42 (75)
...|| +|+||++.+..+.+.
T Consensus 206 GfHDP-KFKr~p~~vias~va 225 (240)
T PRK00968 206 GFHDP-KFKRWPRAVIASFVA 225 (240)
T ss_pred cCCCc-ccccchHHHHHHHHH
Confidence 47788 488887766555443
No 60
>PF09451 ATG27: Autophagy-related protein 27; InterPro: IPR018939 Autophagy is a degradative transport pathway that delivers cytosolic proteins to the lysosome (vacuole) [] and is induced by starvation []. Cytosolic proteins appear inside the vacuole enclosed in autophagic vesicles. Autophagy significantly differs from other transport pathways by using double membrane layered transport intermediates, called autophagosomes [, ]. The breakdown of vesicular transport intermediates is a unique feature of autophagy []. Autophagy can also function in the elimination of invading bacteria and antigens []. There are more than 25 AuTophaGy-related (ATG) genes that are essential for autophagy, although it is still not known how the autophagosome is made. Atg9 is a potential membrane carrier to deliver lipids that are used to form the vesicle. Atg27 is another transmembrane protein, and is a cycling protein []. It acts as an effector of VPS34 phosphatidylinositol 3-phosphate kinase signalling and regulates the cytoplasm to vacuole transport (Cvt) vesicle formation. It is also required for autophagy-dependent cycling of ATG9.
Probab=35.55 E-value=34 Score=23.68 Aligned_cols=25 Identities=20% Similarity=0.285 Sum_probs=12.7
Q ss_pred hhHHHHHHHHHHHHHhhhHhhcccc
Q psy16922 37 NIGMVFITCLYGFTGLVGYMKYGAA 61 (75)
Q Consensus 37 ~~s~~i~~~ly~~~G~~GYl~fG~~ 61 (75)
.+++...++++++++++.|+.+|.-
T Consensus 199 ~~g~f~wl~i~~~l~~~~Y~i~g~~ 223 (268)
T PF09451_consen 199 GWGFFTWLFIILFLFLAAYLIFGSW 223 (268)
T ss_pred cccHHHHHHHHHHHHHHHHhhhhhh
Confidence 3344444445555555566666543
No 61
>PF13396 PLDc_N: Phospholipase_D-nuclease N-terminal
Probab=34.00 E-value=39 Score=16.81 Aligned_cols=24 Identities=17% Similarity=0.425 Sum_probs=16.9
Q ss_pred hHHHHHHHHHHHHHhhhHhhcccc
Q psy16922 38 IGMVFITCLYGFTGLVGYMKYGAA 61 (75)
Q Consensus 38 ~s~~i~~~ly~~~G~~GYl~fG~~ 61 (75)
..-.+...+.=.+|...|+.+|.+
T Consensus 23 ~~W~~~i~~~P~iG~i~Yl~~gr~ 46 (46)
T PF13396_consen 23 ILWLIVILFFPIIGPILYLIFGRK 46 (46)
T ss_pred hHHHHHHHHHHHHHHhheEEEeCC
Confidence 344555555668899999999863
No 62
>PF07125 DUF1378: Protein of unknown function (DUF1378); InterPro: IPR009808 This entry is represented by Bacteriophage 933W, Orf25. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of hypothetical bacterial and phage proteins of around 59 residues in length. Bacterial members of this family seem to be specific to Enterobacteria. The function of this family is unknown.
Probab=33.64 E-value=43 Score=18.39 Aligned_cols=23 Identities=22% Similarity=0.345 Sum_probs=17.0
Q ss_pred hhhhHHHHHHHHHHHHHhhhHhhcc
Q psy16922 35 VFNIGMVFITCLYGFTGLVGYMKYG 59 (75)
Q Consensus 35 vl~~s~~i~~~ly~~~G~~GYl~fG 59 (75)
++.+-+.+++.+|+.-| ||-.-.
T Consensus 7 ~lLyFctvVcaLYLvsG--Gyk~IR 29 (59)
T PF07125_consen 7 ILLYFCTVVCALYLVSG--GYKVIR 29 (59)
T ss_pred HHHHHHHHHHHHHHHhc--cHHHHH
Confidence 46666778889999988 775543
No 63
>PF04560 RNA_pol_Rpb2_7: RNA polymerase Rpb2, domain 7; InterPro: IPR007641 RNA polymerases catalyse the DNA-dependent polymerisation of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial and chloroplast polymerases). Rpb2 is the second largest subunit of the RNA polymerase. This domain comprised of the structural domains anchor and clamp. The clamp region (C-terminal) contains a zinc-binding motif. The clamp region is named due to its interaction with the clamp domain found in Rpb1. The domain also contains a region termed switch 4. The switches within the polymerase are thought to signal different stages of transcription [].; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 1SMY_M 3DXJ_M 3AOI_C 2A68_M 1ZYR_C 3AOH_H 1IW7_M 2O5J_C 2CW0_M 2O5I_M ....
Probab=31.70 E-value=9.9 Score=22.01 Aligned_cols=27 Identities=15% Similarity=0.331 Sum_probs=24.3
Q ss_pred hhhhhcccccceeeehhhHHhCCCCCC
Q psy16922 2 FAQIEKNENLLTSKIVSLENNMKQPAD 28 (75)
Q Consensus 2 ~~~~~~~~~~g~~vv~~i~~~Mk~p~~ 28 (75)
|-+||.-++.+||....++..|.+.++
T Consensus 5 ~GEMErd~LiahGas~~L~erl~~~SD 31 (81)
T PF04560_consen 5 FGEMERDALIAHGASFLLKERLFDKSD 31 (81)
T ss_dssp EEHHHHHHHHHTTBHHHHHHHHTTTTT
T ss_pred hhHHHHHHHHHhhHHHHHHHHhcCCCc
Confidence 457999999999999999999998876
No 64
>TIGR00930 2a30 K-Cl cotransporter.
Probab=31.60 E-value=19 Score=29.53 Aligned_cols=41 Identities=10% Similarity=0.020 Sum_probs=31.7
Q ss_pred cccceeeehhhHHhCCCCCC-CCCccchhhhHHHHHHHHHHHHHh
Q psy16922 9 ENLLTSKIVSLENNMKQPAD-YRKPCGVFNIGMVFITCLYGFTGL 52 (75)
Q Consensus 9 ~~~g~~vv~~i~~~Mk~p~~-f~~~~~vl~~s~~i~~~ly~~~G~ 52 (75)
++.|+-....+-.|+|+|++ .| +....++.+++++|+++.+
T Consensus 292 A~tGi~agan~sgElKnP~r~IP---ratl~ai~i~~vlYllv~~ 333 (953)
T TIGR00930 292 SVTGILAGANISGDLKDPQKAIP---KGTLLAILTTTVVYLGSVV 333 (953)
T ss_pred HHHHHHHHHHHHHhccChhhhhH---HHHHHHHHHHHHHHHHHHH
Confidence 45555555668889999974 44 5888999999999999865
No 65
>cd08684 C2A_Tac2-N C2 domain first repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphos
Probab=29.44 E-value=24 Score=21.53 Aligned_cols=24 Identities=4% Similarity=0.063 Sum_probs=21.4
Q ss_pred hhhcccccceeeehhhHHhCCCCC
Q psy16922 4 QIEKNENLLTSKIVSLENNMKQPA 27 (75)
Q Consensus 4 ~~~~~~~~g~~vv~~i~~~Mk~p~ 27 (75)
||+-+.+.-+.+++.+++.|++.+
T Consensus 57 qi~l~qL~~V~L~fsv~~~~~RKe 80 (103)
T cd08684 57 AIKLQNLQTVRLVFKIQTQTPRKR 80 (103)
T ss_pred HHHHhhccceEEEEEeeccCCccc
Confidence 788899999999999999888765
No 66
>PRK14748 kdpF potassium-transporting ATPase subunit F; Provisional
Probab=28.55 E-value=77 Score=15.03 Aligned_cols=9 Identities=44% Similarity=0.833 Sum_probs=4.2
Q ss_pred HHhhhHhhc
Q psy16922 50 TGLVGYMKY 58 (75)
Q Consensus 50 ~G~~GYl~f 58 (75)
+-.+||+.|
T Consensus 13 ~lLlgYLvy 21 (29)
T PRK14748 13 FLLLGYLVY 21 (29)
T ss_pred HHHHHHHHH
Confidence 334455544
No 67
>COG5052 YOP1 Protein involved in membrane traffic [Intracellular trafficking and secretion]
Probab=28.21 E-value=48 Score=22.34 Aligned_cols=43 Identities=12% Similarity=0.117 Sum_probs=31.1
Q ss_pred cccceeeehhhHHhCCCCCCCCCccchhhhHHHHHHHHHHHHHhhhH
Q psy16922 9 ENLLTSKIVSLENNMKQPADYRKPCGVFNIGMVFITCLYGFTGLVGY 55 (75)
Q Consensus 9 ~~~g~~vv~~i~~~Mk~p~~f~~~~~vl~~s~~i~~~ly~~~G~~GY 55 (75)
-+++..+.-++++.|..++.|- ++..+......++..++-+||
T Consensus 18 t~~~~piL~~ie~~~~~~k~Y~----~~~asf~~l~~lfs~vlG~g~ 60 (186)
T COG5052 18 TLQAFPILREIENLYNRYKKYF----MAGASFLYLLNLFSTVLGFGL 60 (186)
T ss_pred HHHhhHHHHHHHHHhCcchhhH----HHHHHHHHHHHHHHHhhhHHH
Confidence 3567777888999999888774 566666666666666665554
No 68
>PF10660 MitoNEET_N: Iron-containing outer mitochondrial membrane protein N-terminus ; InterPro: IPR019610 The CDGSH iron sulphur domain are a group of iron-sulphur (Fe-S) clusters and a unique 39 amino acid CDGSH domain [C-X-C-X2-(S/T)-X3-P-X-C-D-G-(S/A/T)-H]. The CDGSH iron sulphur domain protein (also referred to as mitoNEET) is an integral membrane protein located in the outer mitochondrial membrane and whose function may be to transport iron into the mitochondria []. Iron in turn is essential for the function of several mitochondrial enzymes. This entry represents the N-terminal of the mitoNEET and Miner-type proteins that carry a CDGSH-type cluster-binding domain (IPR018967 from INTERPRO) that coordinate a redox-active 2Fe-2S cluster. In the outer mitochondrian membrane (OMM), the CDGSH 2Fe-2S-containing domain is oriented towards the cytoplasm and is tethered to the mitochondrial membrane by the N-terminal domain found in higher vertebrates [, , ]. The whole protein regulates oxidative capacity and may function in electron transfer, for instance in redox reactions with metabolic intermediates, cofactors and/or proteins localized at the OMM.; GO: 0051537 2 iron, 2 sulfur cluster binding, 0043231 intracellular membrane-bounded organelle; PDB: 2R13_A 3REE_A 2QD0_B.
Probab=27.65 E-value=20 Score=20.09 Aligned_cols=39 Identities=10% Similarity=0.180 Sum_probs=0.0
Q ss_pred HhCCCCCCCCCccchhhhHHHHHHHHHHHHHhhhHhhcc
Q psy16922 21 NNMKQPADYRKPCGVFNIGMVFITCLYGFTGLVGYMKYG 59 (75)
Q Consensus 21 ~~Mk~p~~f~~~~~vl~~s~~i~~~ly~~~G~~GYl~fG 59 (75)
++.--|+.|..|...-.-=.+-.+.+...+|.+||++|-
T Consensus 17 ~~lPiP~s~gg~f~Ls~kdWl~Lvp~~~~va~igYlayk 55 (64)
T PF10660_consen 17 KSLPIPDSFGGFFKLSVKDWLALVPFAAAVAGIGYLAYK 55 (64)
T ss_dssp ---------------------------------------
T ss_pred ccccccccccccccccHHHHHHHHhHHHHHHHHHHHhhe
Confidence 334446666544333222334455667788889998874
No 69
>KOG1286|consensus
Probab=27.36 E-value=47 Score=25.70 Aligned_cols=46 Identities=9% Similarity=0.061 Sum_probs=36.3
Q ss_pred hhcccccceeeehhhHHhCCCCCCCCCccchhhhHHHHHHHHHHHHHh
Q psy16922 5 IEKNENLLTSKIVSLENNMKQPADYRKPCGVFNIGMVFITCLYGFTGL 52 (75)
Q Consensus 5 ~~~~~~~g~~vv~~i~~~Mk~p~~f~~~~~vl~~s~~i~~~ly~~~G~ 52 (75)
.+-|+|.|.=++-..-.|-|+|++ ..|.....++..++.+|+...+
T Consensus 240 ~~~fsf~G~e~va~~a~E~kNP~k--~IP~ai~~s~~ri~~~Yi~~~~ 285 (554)
T KOG1286|consen 240 TAFFSFIGFELVATTAEEAKNPRK--AIPKAIKQSLLRILLFYILSSI 285 (554)
T ss_pred HHHHHHhhHHHHHHHHHhccCCcc--cccHHHHHHHHHHHHHHHHHHH
Confidence 345777777788888899999963 2335899999999999998865
No 70
>PHA02980 hypothetical protein; Provisional
Probab=25.97 E-value=1.2e+02 Score=19.85 Aligned_cols=34 Identities=12% Similarity=-0.074 Sum_probs=23.3
Q ss_pred HHhCCCCCCCCCccchhhhHH-HHHHHHHHHHHhhhHhhc
Q psy16922 20 ENNMKQPADYRKPCGVFNIGM-VFITCLYGFTGLVGYMKY 58 (75)
Q Consensus 20 ~~~Mk~p~~f~~~~~vl~~s~-~i~~~ly~~~G~~GYl~f 58 (75)
|.+.++|. +.. -.+.+ .+=+++|.++|..+|+.+
T Consensus 33 Y~~L~KP~-~~P----P~wvF~pVWtiLY~lMgiA~~lvw 67 (160)
T PHA02980 33 YTKSNKHL-IFP----PYYVRFSLYIISYIFMGHGMYLIH 67 (160)
T ss_pred CccccCCC-CCC----CcchHHHHHHHHHHHHHHHHHHHH
Confidence 44677775 432 22233 345789999999999999
No 71
>PF13906 AA_permease_C: C-terminus of AA_permease
Probab=24.72 E-value=88 Score=16.46 Aligned_cols=17 Identities=35% Similarity=0.526 Sum_probs=11.9
Q ss_pred HHHHHHHHhhhHhhccc
Q psy16922 44 TCLYGFTGLVGYMKYGA 60 (75)
Q Consensus 44 ~~ly~~~G~~GYl~fG~ 60 (75)
..+.+.+|..-|+.||-
T Consensus 32 f~iWl~iGl~iYf~YG~ 48 (51)
T PF13906_consen 32 FGIWLAIGLVIYFGYGI 48 (51)
T ss_pred HHHHHHHHHHHHHheee
Confidence 34466778888888875
No 72
>PF11119 DUF2633: Protein of unknown function (DUF2633); InterPro: IPR022576 This family is conserved largely in Proteobacteria. Several members are named as YfgG. The function is not known.
Probab=24.18 E-value=90 Score=17.25 Aligned_cols=21 Identities=19% Similarity=0.235 Sum_probs=11.0
Q ss_pred chhhhHHHHHH--HHHHHHHhhh
Q psy16922 34 GVFNIGMVFIT--CLYGFTGLVG 54 (75)
Q Consensus 34 ~vl~~s~~i~~--~ly~~~G~~G 54 (75)
.|+.+++++-+ ++|..+|..-
T Consensus 12 iVLLISfiIlfgRl~Y~~I~a~~ 34 (59)
T PF11119_consen 12 IVLLISFIILFGRLIYSAIGAWV 34 (59)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHH
Confidence 45666665533 3566665443
No 73
>PRK09400 secE preprotein translocase subunit SecE; Reviewed
Probab=23.94 E-value=1.1e+02 Score=16.75 Aligned_cols=19 Identities=16% Similarity=0.158 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHhhhHhh
Q psy16922 39 GMVFITCLYGFTGLVGYMK 57 (75)
Q Consensus 39 s~~i~~~ly~~~G~~GYl~ 57 (75)
..-++.+-++++|++||.-
T Consensus 35 ia~~~~iG~~i~G~iGf~I 53 (61)
T PRK09400 35 VAKVTGLGILLIGLIGFII 53 (61)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4445666677888888864
No 74
>PF05817 Ribophorin_II: Oligosaccharyltransferase subunit Ribophorin II; InterPro: IPR008814 This family consists of several eukaryotic Ribophorin II (RPN2) proteins. The mammalian oligosaccharyltransferase (OST) is a protein complex that effects the cotranslational N-glycosylation of newly synthesised polypeptides, and is composed of at least four rough ER-specific membrane proteins: ribophorins I and II (RI and RII), OST48, and Dadl. The mechanism(s) by which the subunits of this complex are retained in the ER are not well understood [].; GO: 0004579 dolichyl-diphosphooligosaccharide-protein glycotransferase activity, 0018279 protein N-linked glycosylation via asparagine, 0005789 endoplasmic reticulum membrane, 0008250 oligosaccharyltransferase complex
Probab=23.23 E-value=1e+02 Score=24.42 Aligned_cols=49 Identities=10% Similarity=0.095 Sum_probs=28.2
Q ss_pred ceeeehhhHHhCCCCCCCCCccchhhhHHHHHHHHHHHHHhhhHhhccccc
Q psy16922 12 LTSKIVSLENNMKQPADYRKPCGVFNIGMVFITCLYGFTGLVGYMKYGAAT 62 (75)
Q Consensus 12 g~~vv~~i~~~Mk~p~~f~~~~~vl~~s~~i~~~ly~~~G~~GYl~fG~~v 62 (75)
--+.-|+|.|-+|.|++-|. .++...+...++.=+.+=+.+|+..|-+.
T Consensus 527 ry~~kpEI~H~Fr~~eK~pp--~~vS~~F~~~vlapl~~Ll~~W~~lG~Nl 575 (636)
T PF05817_consen 527 RYGPKPEIHHIFREPEKRPP--KIVSLVFTGLVLAPLLVLLILWLKLGANL 575 (636)
T ss_pred cCCCCCceeeecCCCCCCCc--hHHHHHHHHHHHHHHHHHHHHHHHcCcch
Confidence 34567899999999976553 45554444333322222223566677553
No 75
>COG2966 Uncharacterized conserved protein [Function unknown]
Probab=21.41 E-value=63 Score=22.48 Aligned_cols=25 Identities=20% Similarity=0.187 Sum_probs=17.9
Q ss_pred CCCCCCCCccchhhhHHHHHHHHHH
Q psy16922 24 KQPADYRKPCGVFNIGMVFITCLYG 48 (75)
Q Consensus 24 k~p~~f~~~~~vl~~s~~i~~~ly~ 48 (75)
++|.+|++|..++.+++....+.++
T Consensus 118 ~~~~~y~~~l~~~~~g~~~~~f~~l 142 (250)
T COG2966 118 KQPLRYSRWLVLLMAGLAAAAFALL 142 (250)
T ss_pred hCccccccHHHHHHHHHHHHHHHHH
Confidence 4788999988777777766555433
No 76
>TIGR00327 secE_euk_arch protein translocase SEC61 complex gamma subunit, archaeal and eukaryotic. This model describes archaeal SEC61-like and eukaryotic SEC61 but not bacterial secE proteins, for which a Pfam pfam00584 (SecE) has been created.
Probab=20.56 E-value=1.4e+02 Score=16.43 Aligned_cols=19 Identities=16% Similarity=0.183 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHhhhHhh
Q psy16922 39 GMVFITCLYGFTGLVGYMK 57 (75)
Q Consensus 39 s~~i~~~ly~~~G~~GYl~ 57 (75)
..-++.+-+.++|+.||+-
T Consensus 31 iak~t~iG~~i~G~IGf~I 49 (61)
T TIGR00327 31 VAKVTGIGIIIVGIIGYII 49 (61)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3445556677788888864
No 77
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=20.03 E-value=1.5e+02 Score=19.27 Aligned_cols=24 Identities=17% Similarity=0.048 Sum_probs=14.9
Q ss_pred hHHHHHHHHHHHHHhhhHhhcccc
Q psy16922 38 IGMVFITCLYGFTGLVGYMKYGAA 61 (75)
Q Consensus 38 ~s~~i~~~ly~~~G~~GYl~fG~~ 61 (75)
+..+...++-..+++.+|+.+|+.
T Consensus 9 ~~~~~~~~~~~~~~~~~Y~~~g~~ 32 (198)
T PRK10370 9 KMLTTLTILMVFLCVGSYLLSPKW 32 (198)
T ss_pred HHHHHHHHHHHHHHHHHHHHcchH
Confidence 344444555555666788888874
Done!