Query psy16922
Match_columns 75
No_of_seqs 110 out of 1020
Neff 7.0
Searched_HMMs 29240
Date Fri Aug 16 17:08:48 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16922.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/16922hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4djk_A Probable glutamate/gamm 90.1 0.11 3.9E-06 36.5 1.6 52 6-60 210-262 (511)
2 3gia_A Uncharacterized protein 90.1 0.041 1.4E-06 38.1 -0.7 52 5-59 196-248 (444)
3 3l1l_A Arginine/agmatine antip 88.0 0.093 3.2E-06 36.2 -0.1 52 6-60 200-252 (445)
4 2kse_A Sensor protein QSEC; me 28.1 68 0.0023 18.3 3.4 30 35-64 14-43 (186)
5 3mp7_B Preprotein translocase 24.5 85 0.0029 16.4 3.9 33 20-57 19-51 (61)
6 1rh5_B Preprotein translocase 19.6 76 0.0026 17.3 2.2 18 40-57 38-55 (74)
7 4gd3_A NI/Fe-hydrogenase 1 B-t 18.7 1.6E+02 0.0053 18.6 3.9 32 21-52 6-37 (235)
8 2ww9_B Protein transport prote 17.0 94 0.0032 17.3 2.2 18 39-56 50-67 (80)
9 3rvy_A ION transport protein; 14.9 1.5E+02 0.0051 19.1 3.1 23 40-62 152-174 (285)
10 2ls4_A High affinity copper up 18.3 38 0.0013 14.9 0.0 10 53-62 15-24 (26)
No 1
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A
Probab=90.09 E-value=0.11 Score=36.48 Aligned_cols=52 Identities=21% Similarity=0.142 Sum_probs=41.2
Q ss_pred hcccccceeeehhhHHhCCCCCC-CCCccchhhhHHHHHHHHHHHHHhhhHhhccc
Q psy16922 6 EKNENLLTSKIVSLENNMKQPAD-YRKPCGVFNIGMVFITCLYGFTGLVGYMKYGA 60 (75)
Q Consensus 6 ~~~~~~g~~vv~~i~~~Mk~p~~-f~~~~~vl~~s~~i~~~ly~~~G~~GYl~fG~ 60 (75)
..++|.|.-.....-.|+|||++ .| +.+..++.+++++|+...+.-....++
T Consensus 210 ~~~a~~G~e~~~~~a~E~k~P~k~ip---~ai~~~~~~~~~~y~~~~~~~~~~~~~ 262 (511)
T 4djk_A 210 FILSYMGVEASATHVNEMSNPGRDYP---LAMLLLMVAAICLSSVGGLSIAMVIPG 262 (511)
T ss_dssp HHHHHTTGGGGTGGGSSSSCCTTTHH---HHHHHHHHHHHHHHHHHHHHHHTTSCT
T ss_pred HHHHHhhHHHHHHHHHhccCcccchh---HHHHHHHHHHHHHHHHHHHHHHeecCH
Confidence 45778888889999999999964 45 489999999999999887755555554
No 2
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C
Probab=90.08 E-value=0.041 Score=38.09 Aligned_cols=52 Identities=10% Similarity=0.096 Sum_probs=40.9
Q ss_pred hhcccccceeeehhhHHhCCCCCC-CCCccchhhhHHHHHHHHHHHHHhhhHhhcc
Q psy16922 5 IEKNENLLTSKIVSLENNMKQPAD-YRKPCGVFNIGMVFITCLYGFTGLVGYMKYG 59 (75)
Q Consensus 5 ~~~~~~~g~~vv~~i~~~Mk~p~~-f~~~~~vl~~s~~i~~~ly~~~G~~GYl~fG 59 (75)
+..+++.|.-.....-.|+|||++ .|| .+..+..+++++|+.....-....+
T Consensus 196 ~~~~a~~G~e~~~~~~~e~k~P~r~ip~---ai~~~~~~~~~~y~~~~~~~~~~~~ 248 (444)
T 3gia_A 196 IFFLSYMGFGVITNASEHIENPKKNVPR---AIFISILIVMFVYVGVAISAIGNLP 248 (444)
T ss_dssp HGGGGGTHHHHHHTTGGGBSSHHHHHHH---HHHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHhHHHHHHHHHHccCcccchhH---HHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 346889999999999999999964 564 8899999999999987665433333
No 3
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=88.01 E-value=0.093 Score=36.21 Aligned_cols=52 Identities=8% Similarity=-0.072 Sum_probs=41.7
Q ss_pred hcccccceeeehhhHHhCCCCC-CCCCccchhhhHHHHHHHHHHHHHhhhHhhccc
Q psy16922 6 EKNENLLTSKIVSLENNMKQPA-DYRKPCGVFNIGMVFITCLYGFTGLVGYMKYGA 60 (75)
Q Consensus 6 ~~~~~~g~~vv~~i~~~Mk~p~-~f~~~~~vl~~s~~i~~~ly~~~G~~GYl~fG~ 60 (75)
..+++.|.-.....-.|+|||+ +.|| .+..+..++.++|+.....-....+.
T Consensus 200 ~~~af~G~e~~~~~~~e~k~p~r~ip~---a~~~~~~~~~~~y~~~~~~~~~~~~~ 252 (445)
T 3l1l_A 200 TLWSFIGVESASVAAGVVKNPKRNVPI---ATIGGVLIAAVCYVLSTTAIMGMIPN 252 (445)
T ss_dssp HHHTTTTTTHHHHGGGGBSSHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHSCT
T ss_pred HHHHHHhHHHHHHHHHHhcCccccccH---HHHHHHHHHHHHHHHHHHHHHhcCCH
Confidence 4678888888999999999995 4554 88999999999999987765555554
No 4
>2kse_A Sensor protein QSEC; methods development, histidine kinase receptor, membrane domain, two-helical hairpin, cell-free synthesis, ATP- binding; NMR {Escherichia coli}
Probab=28.06 E-value=68 Score=18.32 Aligned_cols=30 Identities=7% Similarity=0.145 Sum_probs=14.6
Q ss_pred hhhhHHHHHHHHHHHHHhhhHhhccccccc
Q psy16922 35 VFNIGMVFITCLYGFTGLVGYMKYGAATQG 64 (75)
Q Consensus 35 vl~~s~~i~~~ly~~~G~~GYl~fG~~v~~ 64 (75)
...+......++-...|.+.|..+-+....
T Consensus 14 L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 43 (186)
T 2kse_A 14 LTLIFLILASVTWLLSSFVAWKQTTDNVDE 43 (186)
T ss_dssp SHHHHHHHHHHHHHHHHHHHSCCCSCC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444455556666677666555443
No 5
>3mp7_B Preprotein translocase subunit SECE; protein transport, membrane protein complex, preprotein TRAN membrane insertion,; 2.90A {Pyrococcus furiosus}
Probab=24.48 E-value=85 Score=16.44 Aligned_cols=33 Identities=15% Similarity=0.072 Sum_probs=18.5
Q ss_pred HHhCCCCCCCCCccchhhhHHHHHHHHHHHHHhhhHhh
Q psy16922 20 ENNMKQPADYRKPCGVFNIGMVFITCLYGFTGLVGYMK 57 (75)
Q Consensus 20 ~~~Mk~p~~f~~~~~vl~~s~~i~~~ly~~~G~~GYl~ 57 (75)
-+.-++|++- =..-..-++.+-++++|++||.-
T Consensus 19 lk~~~KPd~~-----Ef~~iak~~~iG~~i~G~iGf~I 51 (61)
T 3mp7_B 19 FLVTKKPNWA-----TYKRAAKITGLGIILIGLIGMLI 51 (61)
T ss_dssp HHHSCCCCTT-----HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhcCCCHH-----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445667532 12334445566677778888853
No 6
>1rh5_B Preprotein translocase SECE subunit; protein translocation, SECY, membrane protein, protein channels, protein transport; 3.20A {Methanocaldococcus jannaschii} SCOP: f.23.28.1 PDB: 1rhz_B 2yxq_B 2yxr_B 3dkn_B
Probab=19.58 E-value=76 Score=17.34 Aligned_cols=18 Identities=17% Similarity=0.362 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHhhhHhh
Q psy16922 40 MVFITCLYGFTGLVGYMK 57 (75)
Q Consensus 40 ~~i~~~ly~~~G~~GYl~ 57 (75)
.-++.+-++++|++||.-
T Consensus 38 ak~~~iG~~imG~IGfiI 55 (74)
T 1rh5_B 38 AKVTALGISLLGIIGYII 55 (74)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344555667778888864
No 7
>4gd3_A NI/Fe-hydrogenase 1 B-type cytochrome subunit; O2-tolerant H2:quinone oxidoreductase, membrane-bound, NI-Fe hydrogenase-cytochrome B complex; HET: LMT HEM; 3.30A {Escherichia coli}
Probab=18.71 E-value=1.6e+02 Score=18.63 Aligned_cols=32 Identities=16% Similarity=0.256 Sum_probs=23.4
Q ss_pred HhCCCCCCCCCccchhhhHHHHHHHHHHHHHh
Q psy16922 21 NNMKQPADYRKPCGVFNIGMVFITCLYGFTGL 52 (75)
Q Consensus 21 ~~Mk~p~~f~~~~~vl~~s~~i~~~ly~~~G~ 52 (75)
.++++..+++.+.++++|.+.++.+.-...|.
T Consensus 6 ~~~~~v~~y~~~~R~~HW~~a~~ii~l~~tG~ 37 (235)
T 4gd3_A 6 DNVVSHYVFEAPVRIWHWLTVLCMAVLMVTGY 37 (235)
T ss_dssp --CCCCCCCCCCTTHHHHHHHHHHHHHHHHHH
T ss_pred cccceEEecChHHHHHHHHHHHHHHHHHHHHH
Confidence 34566667888888999999888877777765
No 8
>2ww9_B Protein transport protein SSS1; ribonucleoprotein, transmembrane, phospho signal sequence, membrane, ribosome, transport; 8.60A {Saccharomyces cerevisiae} PDB: 2wwa_B
Probab=16.96 E-value=94 Score=17.29 Aligned_cols=18 Identities=17% Similarity=0.263 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHhhhHh
Q psy16922 39 GMVFITCLYGFTGLVGYM 56 (75)
Q Consensus 39 s~~i~~~ly~~~G~~GYl 56 (75)
..-++.+-++++|+.||.
T Consensus 50 iak~t~iG~~imG~IGfi 67 (80)
T 2ww9_B 50 IVKAVGIGFIAVGIIGYA 67 (80)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344555667788888886
No 9
>3rvy_A ION transport protein; tetrameric ION channel, voltage-gated sodium-selective ION C membrane, metal transport; HET: PX4; 2.70A {Arcobacter butzleri} PDB: 3rvz_A* 4ekw_A* 3rw0_A*
Probab=14.92 E-value=1.5e+02 Score=19.06 Aligned_cols=23 Identities=9% Similarity=0.281 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHhhhHhhccccc
Q psy16922 40 MVFITCLYGFTGLVGYMKYGAAT 62 (75)
Q Consensus 40 ~~i~~~ly~~~G~~GYl~fG~~v 62 (75)
..+..+++..++.+|+..||+.-
T Consensus 152 ~~~~~~~~~~fa~~g~~~f~~~~ 174 (285)
T 3rvy_A 152 IALMTLFFYIFAIMATQLFGERF 174 (285)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHHHHHHHhCccc
Confidence 34555666677888999998754
No 10
>2ls4_A High affinity copper uptake protein 1; HCTR1 TMDS, oligomerization, metal transport; NMR {Homo sapiens}
Probab=18.32 E-value=38 Score=14.95 Aligned_cols=10 Identities=20% Similarity=0.517 Sum_probs=7.7
Q ss_pred hhHhhccccc
Q psy16922 53 VGYMKYGAAT 62 (75)
Q Consensus 53 ~GYl~fG~~v 62 (75)
+||+.||.+.
T Consensus 15 ~Gyf~F~~~~ 24 (26)
T 2ls4_A 15 TGYFLFSWKK 24 (26)
Confidence 6899988764
Done!