Query psy16922
Match_columns 75
No_of_seqs 110 out of 1020
Neff 7.0
Searched_HMMs 13730
Date Fri Aug 16 17:08:54 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16922.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/16922hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1kqfb2 f.23.22.1 (B:246-290) 59.8 4.7 0.00034 19.2 2.8 33 32-64 8-40 (45)
2 d1rh5b_ f.23.28.1 (B:) Preprot 19.8 37 0.0027 16.5 2.2 18 41-58 28-45 (56)
3 d1vjua_ d.248.1.1 (A:) Hypothe 10.7 51 0.0037 21.1 1.5 19 53-73 255-273 (302)
4 d1pvma3 g.41.13.1 (A:143-178) 8.9 15 0.0011 16.1 -1.2 14 12-25 8-21 (36)
5 d1q90b_ f.21.1.2 (B:) Cytochro 8.8 1.8E+02 0.013 17.2 3.5 17 42-58 120-136 (212)
6 d1v54d_ f.23.1.1 (D:) Mitochon 6.3 1.6E+02 0.012 16.6 2.2 42 17-60 62-103 (144)
7 d2axti1 f.23.37.1 (I:1-35) Pho 5.6 1.5E+02 0.011 12.7 2.9 21 37-57 5-25 (35)
8 d2fufa1 d.89.1.1 (A:131-256) T 5.2 1.1E+02 0.008 17.1 1.0 8 23-30 2-9 (126)
9 d1kqfc_ f.21.1.1 (C:) Formate 4.6 1E+02 0.0073 17.5 0.6 27 27-53 7-33 (216)
10 d3cx5c2 f.21.1.2 (C:1-261) Mit 4.4 4E+02 0.029 16.0 3.4 16 42-57 119-134 (261)
No 1
>d1kqfb2 f.23.22.1 (B:246-290) Iron-sulfur subunit of formate dehydrogenase N, transmembrane anchor {Escherichia coli [TaxId: 562]}
Probab=59.76 E-value=4.7 Score=19.18 Aligned_cols=33 Identities=9% Similarity=-0.169 Sum_probs=23.2
Q ss_pred ccchhhhHHHHHHHHHHHHHhhhHhhccccccc
Q psy16922 32 PCGVFNIGMVFITCLYGFTGLVGYMKYGAATQG 64 (75)
Q Consensus 32 ~~~vl~~s~~i~~~ly~~~G~~GYl~fG~~v~~ 64 (75)
|.+++..--......-.+.|++=|++.|++..+
T Consensus 8 WKgv~Kpl~~~~~~~~~~~~~fHYv~vGPn~v~ 40 (45)
T d1kqfb2 8 WKGALKPLAAAGFIATFAGLIFHYIGIGPNKEV 40 (45)
T ss_dssp HHTTHHHHHHHHHHHHHHHHHHHHHHHCCBCSC
T ss_pred hhhhHHHHHHHHHHHHHHHHHHhhheeCCCccc
Confidence 445555555566666667788999999998643
No 2
>d1rh5b_ f.23.28.1 (B:) Preprotein translocase SecE subunit {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=19.79 E-value=37 Score=16.47 Aligned_cols=18 Identities=17% Similarity=0.335 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHhhhHhhc
Q psy16922 41 VFITCLYGFTGLVGYMKY 58 (75)
Q Consensus 41 ~i~~~ly~~~G~~GYl~f 58 (75)
.++.+=++++|+.||+.+
T Consensus 28 ~v~~iG~~i~G~IGf~I~ 45 (56)
T d1rh5b_ 28 KVTALGISLLGIIGYIIH 45 (56)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 345555677788888654
No 3
>d1vjua_ d.248.1.1 (A:) Hypothetical protein Lmaj006828 {Leishmania major [TaxId: 5664]}
Probab=10.73 E-value=51 Score=21.06 Aligned_cols=19 Identities=32% Similarity=0.614 Sum_probs=14.0
Q ss_pred hhHhhccccccchhhhcCCCC
Q psy16922 53 VGYMKYGAATQGSVTLNLPKT 73 (75)
Q Consensus 53 ~GYl~fG~~v~~~I~lnlp~~ 73 (75)
+|-.+ |..++ +|+++||..
T Consensus 255 FGL~t-~gr~e-sILmSlPp~ 273 (302)
T d1vjua_ 255 FGLQS-GGRTE-SILISLPPR 273 (302)
T ss_dssp HHHHT-TCCHH-HHGGGSCSC
T ss_pred hhccc-CCchh-eeeecCCCc
Confidence 45555 77776 999999964
No 4
>d1pvma3 g.41.13.1 (A:143-178) Hypothetical protein Ta0289 C-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}
Probab=8.90 E-value=15 Score=16.07 Aligned_cols=14 Identities=7% Similarity=-0.031 Sum_probs=10.1
Q ss_pred ceeeehhhHHhCCC
Q psy16922 12 LTSKIVSLENNMKQ 25 (75)
Q Consensus 12 g~~vv~~i~~~Mk~ 25 (75)
|+|++.|+|++--+
T Consensus 8 gvgvl~pvy~~kge 21 (36)
T d1pvma3 8 GVGVLEPVYNEKGE 21 (36)
T ss_dssp SSSBEEEEECTTSC
T ss_pred CceEEEEeecCCCc
Confidence 67888888876443
No 5
>d1q90b_ f.21.1.2 (B:) Cytochrome b6 subunit of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=8.81 E-value=1.8e+02 Score=17.25 Aligned_cols=17 Identities=18% Similarity=0.170 Sum_probs=10.5
Q ss_pred HHHHHHHHHHhhhHhhc
Q psy16922 42 FITCLYGFTGLVGYMKY 58 (75)
Q Consensus 42 i~~~ly~~~G~~GYl~f 58 (75)
+...+-+..|+.||+-=
T Consensus 120 ~l~~l~m~~aftGY~Lp 136 (212)
T d1q90b_ 120 IMAVCTVSFGVTGYSLP 136 (212)
T ss_dssp HHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhhhhcc
Confidence 34455566678888643
No 6
>d1v54d_ f.23.1.1 (D:) Mitochondrial cytochrome c oxidase subunit IV {Cow (Bos taurus) [TaxId: 9913]}
Probab=6.31 E-value=1.6e+02 Score=16.58 Aligned_cols=42 Identities=17% Similarity=0.031 Sum_probs=20.9
Q ss_pred hhhHHhCCCCCCCCCccchhhhHHHHHHHHHHHHHhhhHhhccc
Q psy16922 17 VSLENNMKQPADYRKPCGVFNIGMVFITCLYGFTGLVGYMKYGA 60 (75)
Q Consensus 17 ~~i~~~Mk~p~~f~~~~~vl~~s~~i~~~ly~~~G~~GYl~fG~ 60 (75)
.+-+.+|..|..- |..|+...++.+.+-.+++...-...+++
T Consensus 62 ~~t~ae~~~p~ge--wK~v~g~~~~~i~~s~~i~~~~r~~v~p~ 103 (144)
T d1v54d_ 62 KESFAEMNRSTNE--WKTVVGAAMFFIGFTALLLIWEKHYVYGP 103 (144)
T ss_dssp SSCHHHHTCCCSH--HHHHHHHHHHHHHHHHHHHHHHHHHTCCC
T ss_pred ccccccccCCCCc--hhHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 4567788887533 23465555444444333333333334443
No 7
>d2axti1 f.23.37.1 (I:1-35) Photosystem II reaction center protein I, PsbI {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=5.59 E-value=1.5e+02 Score=12.66 Aligned_cols=21 Identities=10% Similarity=0.376 Sum_probs=10.4
Q ss_pred hhHHHHHHHHHHHHHhhhHhh
Q psy16922 37 NIGMVFITCLYGFTGLVGYMK 57 (75)
Q Consensus 37 ~~s~~i~~~ly~~~G~~GYl~ 57 (75)
.+..-.+.+++...=++|+|.
T Consensus 5 Ki~Vy~vV~fFv~lFiFGFLS 25 (35)
T d2axti1 5 KITVYIVVTFFVLLFVFGFLS 25 (35)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT
T ss_pred EEehhhHHHHHHHHHHHhhcc
Confidence 334444445555444556654
No 8
>d2fufa1 d.89.1.1 (A:131-256) The origin DNA-binding domain of SV40 T-antigen {Simian virus 40, Sv40 [TaxId: 10633]}
Probab=5.24 E-value=1.1e+02 Score=17.06 Aligned_cols=8 Identities=25% Similarity=0.825 Sum_probs=6.6
Q ss_pred CCCCCCCC
Q psy16922 23 MKQPADYR 30 (75)
Q Consensus 23 Mk~p~~f~ 30 (75)
|++|.+||
T Consensus 2 ~~~P~D~P 9 (126)
T d2fufa1 2 VEDPKDFP 9 (126)
T ss_dssp CCCCSSSC
T ss_pred CCCcccCc
Confidence 78888887
No 9
>d1kqfc_ f.21.1.1 (C:) Formate dehydrogenase N, cytochrome (gamma) subunit {Escherichia coli [TaxId: 562]}
Probab=4.65 E-value=1e+02 Score=17.50 Aligned_cols=27 Identities=11% Similarity=0.068 Sum_probs=20.5
Q ss_pred CCCCCccchhhhHHHHHHHHHHHHHhh
Q psy16922 27 ADYRKPCGVFNIGMVFITCLYGFTGLV 53 (75)
Q Consensus 27 ~~f~~~~~vl~~s~~i~~~ly~~~G~~ 53 (75)
.+++.+.+..++...++.++-+.+|..
T Consensus 7 ~R~~~~~Rl~HW~~a~~~i~L~~TGl~ 33 (216)
T d1kqfc_ 7 VRTKFIDRACHWTVVICFFLVALSGIS 33 (216)
T ss_dssp ECSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EeCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356666678889998888888888763
No 10
>d3cx5c2 f.21.1.2 (C:1-261) Mitochondrial cytochrome b subunit, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=4.44 E-value=4e+02 Score=16.02 Aligned_cols=16 Identities=31% Similarity=0.303 Sum_probs=9.9
Q ss_pred HHHHHHHHHHhhhHhh
Q psy16922 42 FITCLYGFTGLVGYMK 57 (75)
Q Consensus 42 i~~~ly~~~G~~GYl~ 57 (75)
+...+-+..|+.||+-
T Consensus 119 ~l~~l~~~~af~GY~L 134 (261)
T d3cx5c2 119 IIFILTIATAFLGYCC 134 (261)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhc
Confidence 3445555667788864
Done!