RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy16922
         (75 letters)



>gnl|CDD|216528 pfam01490, Aa_trans, Transmembrane amino acid transporter protein. 
           This transmembrane region is found in many amino acid
           transporters including UNC-47 and MTR. UNC-47 encodes a
           vesicular amino butyric acid (GABA) transporter, (VGAT).
           UNC-47 is predicted to have 10 transmembrane domains.
           MTR is a N system amino acid transporter system protein
           involved in methyltryptophan resistance. Other members
           of this family include proline transporters and amino
           acid permeases.
          Length = 406

 Score = 54.2 bits (131), Expect = 2e-10
 Identities = 20/59 (33%), Positives = 36/59 (61%)

Query: 16  IVSLENNMKQPADYRKPCGVFNIGMVFITCLYGFTGLVGYMKYGAATQGSVTLNLPKTS 74
           ++ ++N MK P+ ++    V    ++ +T LY   GLVGY+ +G   +G++ LNLPK+ 
Sbjct: 212 LLPIQNTMKSPSKFKAMTKVLLTAIIIVTVLYILVGLVGYLAFGNNVKGNILLNLPKSD 270


>gnl|CDD|240313 PTZ00206, PTZ00206, amino acid transporter; Provisional.
          Length = 467

 Score = 27.9 bits (62), Expect = 0.39
 Identities = 12/31 (38%), Positives = 14/31 (45%)

Query: 38  IGMVFITCLYGFTGLVGYMKYGAATQGSVTL 68
           I M     +Y  T   GYM +G    GSV L
Sbjct: 296 IAMGMCFTMYVLTAFFGYMDFGRNVTGSVLL 326


>gnl|CDD|212061 cd11492, SLC5sbd_NIS-SMVT, Na(+)/iodide (NIS) and
           Na(+)/multivitamin (SMVT) cotransporters, and related
           proteins; solute binding domain.  NIS (encoded by the
           SLC5A5 gene) transports I-, and other anions including
           ClO4-, SCN-, and Br-. SMVT (encoded by the SLC5A6 gene)
           transports biotin, pantothenic acid and lipoate. This
           subfamily also includes SMCT1 and -2. SMCT1(encoded by
           the SLC5A8 gene) is a high-affinity transporter of
           various monocarboxylates including lactate and pyruvate,
           short-chain fatty acids, ketone bodies, nicotinate and
           its structural analogs, pyroglutamate, benzoate and its
           derivatives, and iodide. SMCT2 (encoded by the SLC5A12
           gene) is a low-affinity transporter for short-chain
           fatty acids, lactate, pyruvate, and nicotinate. This
           subgroup belongs to the solute carrier 5 (SLC5)
           transporter family.
          Length = 522

 Score = 27.4 bits (62), Expect = 0.49
 Identities = 12/29 (41%), Positives = 17/29 (58%)

Query: 30  RKPCGVFNIGMVFITCLYGFTGLVGYMKY 58
           +K   +  +G+V I  L  F+GLV Y KY
Sbjct: 265 KKALWLNIVGLVLILSLCVFSGLVIYAKY 293


>gnl|CDD|237292 PRK13182, racA, polar chromosome segregation protein; Reviewed.
          Length = 175

 Score = 26.9 bits (60), Expect = 0.68
 Identities = 10/27 (37%), Positives = 16/27 (59%)

Query: 2   FAQIEKNENLLTSKIVSLENNMKQPAD 28
           F Q+E   N +T ++  LE  ++Q AD
Sbjct: 87  FEQLEAQLNTITRRLDELERQLQQKAD 113


>gnl|CDD|223884 COG0814, SdaC, Amino acid permeases [Amino acid transport and
           metabolism].
          Length = 415

 Score = 26.5 bits (59), Expect = 1.3
 Identities = 7/37 (18%), Positives = 13/37 (35%)

Query: 35  VFNIGMVFITCLYGFTGLVGYMKYGAATQGSVTLNLP 71
              IG +    LY   G   +  +G+   G++     
Sbjct: 230 AILIGSLIALVLYILVGFFVFGCFGSLVFGNILAAKE 266


>gnl|CDD|215071 PLN00137, PLN00137, NHAD transporter family protein; Provisional.
          Length = 424

 Score = 23.9 bits (52), Expect = 9.2
 Identities = 11/26 (42%), Positives = 15/26 (57%), Gaps = 2/26 (7%)

Query: 12  LTSKI--VSLENNMKQPADYRKPCGV 35
           LT+ I  VSL   +  P++YRK  G 
Sbjct: 121 LTTTIVMVSLLRKLVPPSEYRKLLGA 146


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.321    0.136    0.398 

Gapped
Lambda     K      H
   0.267   0.0746    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 3,536,593
Number of extensions: 258604
Number of successful extensions: 216
Number of sequences better than 10.0: 1
Number of HSP's gapped: 216
Number of HSP's successfully gapped: 7
Length of query: 75
Length of database: 10,937,602
Length adjustment: 45
Effective length of query: 30
Effective length of database: 8,941,672
Effective search space: 268250160
Effective search space used: 268250160
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (24.2 bits)