RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy16922
         (75 letters)



>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
          photosynthetic reaction center, peripheral antenna;
          HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
          Length = 154

 Score = 29.1 bits (64), Expect = 0.090
 Identities = 7/27 (25%), Positives = 11/27 (40%), Gaps = 6/27 (22%)

Query: 6  EKNENLLTSKIVSLENNMKQPADYRKP 32
          EK        +  L+ ++K  AD   P
Sbjct: 18 EKQA------LKKLQASLKLYADDSAP 38


>2rio_A Serine/threonine-protein kinase/endoribonuclease IRE1;
           protein-nucleotide complex, ATP-binding, endoplasmic
           reticulum, glycoprotein; HET: ADP; 2.40A {Saccharomyces
           cerevisiae} PDB: 3lj0_A* 3lj1_A* 3lj2_A* 3fbv_A* 3sdm_A*
           3sdj_A*
          Length = 434

 Score = 24.4 bits (53), Expect = 4.8
 Identities = 7/31 (22%), Positives = 15/31 (48%)

Query: 16  IVSLENNMKQPADYRKPCGVFNIGMVFITCL 46
           ++   NN++      +   +F++G VF   L
Sbjct: 203 LLEESNNLQTKRRLTRSIDIFSMGCVFYYIL 233


>1ffy_A Isoleucyl-tRNA synthetase; protein-RNA complex, metal IONS,
          editing tRNA synthetase, double-sieve, ligase/RNA,
          mupiroci; HET: MRC; 2.20A {Staphylococcus aureus} SCOP:
          a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1qu2_A* 1qu3_A*
          Length = 917

 Score = 24.0 bits (53), Expect = 5.7
 Identities = 7/19 (36%), Positives = 8/19 (42%), Gaps = 6/19 (31%)

Query: 56 MKYGAATQGSVTLNLPKTS 74
          M Y        TL +PKT 
Sbjct: 1  MDYEK------TLLMPKTD 13


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.321    0.136    0.398 

Gapped
Lambda     K      H
   0.267   0.0616    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,032,977
Number of extensions: 46149
Number of successful extensions: 63
Number of sequences better than 10.0: 1
Number of HSP's gapped: 63
Number of HSP's successfully gapped: 4
Length of query: 75
Length of database: 6,701,793
Length adjustment: 44
Effective length of query: 31
Effective length of database: 5,473,269
Effective search space: 169671339
Effective search space used: 169671339
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (23.7 bits)