RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy16922
         (75 letters)



>d1vbva1 b.34.17.1 (A:3-97) Hypothetical protein YccV {Escherichia
          coli [TaxId: 562]}
          Length = 95

 Score = 24.0 bits (52), Expect = 1.5
 Identities = 7/18 (38%), Positives = 9/18 (50%)

Query: 36 FNIGMVFITCLYGFTGLV 53
          F IG      L G+ G+V
Sbjct: 4  FGIGQQVRHSLLGYLGVV 21


>d1ffya3 c.26.1.1 (A:1-200,A:395-644) Isoleucyl-tRNA synthetase
          (IleRS) {Staphylococcus aureus [TaxId: 1280]}
          Length = 450

 Score = 22.6 bits (47), Expect = 6.3
 Identities = 5/8 (62%), Positives = 6/8 (75%)

Query: 67 TLNLPKTS 74
          TL +PKT 
Sbjct: 6  TLLMPKTD 13


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.321    0.136    0.398 

Gapped
Lambda     K      H
   0.267   0.0631    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 251,548
Number of extensions: 8868
Number of successful extensions: 10
Number of sequences better than 10.0: 1
Number of HSP's gapped: 10
Number of HSP's successfully gapped: 3
Length of query: 75
Length of database: 2,407,596
Length adjustment: 42
Effective length of query: 33
Effective length of database: 1,830,936
Effective search space: 60420888
Effective search space used: 60420888
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.1 bits)