BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy16923
(159 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2I13|A Chain A, Aart, A Six Finger Zinc Finger Designed To Recognize Ann
Triplets
pdb|2I13|B Chain B, Aart, A Six Finger Zinc Finger Designed To Recognize Ann
Triplets
Length = 190
Score = 79.0 bits (193), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 40/96 (41%), Positives = 50/96 (52%), Gaps = 1/96 (1%)
Query: 5 FKTKYRLKLHLDTH-GETPYGCPHCPMKLNTRRTLRMHLVVHRDTKAYQCVTCGKSFRRS 63
F K L H TH GE PY CP C + R LR H H K Y C CGKSF +
Sbjct: 59 FSDKKDLTRHQRTHTGEKPYKCPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQL 118
Query: 64 KDLKNHHNLHTGKRPYTCPWCSRTFANGSNCRSHKR 99
L+ H HTG++PY CP C ++F+ N +H+R
Sbjct: 119 AHLRAHQRTHTGEKPYKCPECGKSFSREDNLHTHQR 154
Score = 77.0 bits (188), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 35/81 (43%), Positives = 45/81 (55%)
Query: 19 GETPYGCPHCPMKLNTRRTLRMHLVVHRDTKAYQCVTCGKSFRRSKDLKNHHNLHTGKRP 78
GE PY CP C + L H H K Y+C CGKSF KDL H HTG++P
Sbjct: 18 GEKPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQRTHTGEKP 77
Query: 79 YTCPWCSRTFANGSNCRSHKR 99
Y CP C ++F+ +N R+H+R
Sbjct: 78 YKCPECGKSFSQRANLRAHQR 98
Score = 76.6 bits (187), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 37/96 (38%), Positives = 53/96 (55%), Gaps = 1/96 (1%)
Query: 5 FKTKYRLKLHLDTH-GETPYGCPHCPMKLNTRRTLRMHLVVHRDTKAYQCVTCGKSFRRS 63
F L H TH GE PY CP C + ++ L H H K Y+C CGKSF +
Sbjct: 31 FSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQRTHTGEKPYKCPECGKSFSQR 90
Query: 64 KDLKNHHNLHTGKRPYTCPWCSRTFANGSNCRSHKR 99
+L+ H HTG++PY CP C ++F+ ++ R+H+R
Sbjct: 91 ANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQR 126
Score = 76.6 bits (187), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 38/96 (39%), Positives = 49/96 (51%), Gaps = 1/96 (1%)
Query: 5 FKTKYRLKLHLDTH-GETPYGCPHCPMKLNTRRTLRMHLVVHRDTKAYQCVTCGKSFRRS 63
F + L+ H TH GE PY CP C + LR H H K Y+C CGKSF R
Sbjct: 87 FSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQRTHTGEKPYKCPECGKSFSRE 146
Query: 64 KDLKNHHNLHTGKRPYTCPWCSRTFANGSNCRSHKR 99
+L H HTG++PY CP C ++F+ H+R
Sbjct: 147 DNLHTHQRTHTGEKPYKCPECGKSFSRRDALNVHQR 182
Score = 54.7 bits (130), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/68 (42%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
Query: 11 LKLHLDTH-GETPYGCPHCPMKLNTRRTLRMHLVVHRDTKAYQCVTCGKSFRRSKDLKNH 69
L+ H TH GE PY CP C + L H H K Y+C CGKSF R L H
Sbjct: 121 LRAHQRTHTGEKPYKCPECGKSFSREDNLHTHQRTHTGEKPYKCPECGKSFSRRDALNVH 180
Query: 70 HNLHTGKR 77
HTGK+
Sbjct: 181 QRTHTGKK 188
Score = 28.5 bits (62), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 17/28 (60%)
Query: 72 LHTGKRPYTCPWCSRTFANGSNCRSHKR 99
L G++PY CP C ++F+ + H+R
Sbjct: 15 LEPGEKPYACPECGKSFSRSDHLAEHQR 42
>pdb|1MEY|C Chain C, Crystal Structure Of A Designed Zinc Finger Protein
Bound To Dna
pdb|1MEY|F Chain F, Crystal Structure Of A Designed Zinc Finger Protein
Bound To Dna
pdb|1MEY|G Chain G, Crystal Structure Of A Designed Zinc Finger Protein
Bound To Dna
Length = 87
Score = 73.2 bits (178), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 44/80 (55%)
Query: 20 ETPYGCPHCPMKLNTRRTLRMHLVVHRDTKAYQCVTCGKSFRRSKDLKNHHNLHTGKRPY 79
E PY CP C + L+ H H K Y+C CGKSF +S DL+ H HTG++PY
Sbjct: 2 EKPYKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKPY 61
Query: 80 TCPWCSRTFANGSNCRSHKR 99
CP C ++F+ + H+R
Sbjct: 62 KCPECGKSFSRSDHLSRHQR 81
Score = 53.9 bits (128), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 34/74 (45%), Gaps = 1/74 (1%)
Query: 5 FKTKYRLKLHLDTH-GETPYGCPHCPMKLNTRRTLRMHLVVHRDTKAYQCVTCGKSFRRS 63
F L+ H TH GE PY CP C + L+ H H K Y+C CGKSF RS
Sbjct: 14 FSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKPYKCPECGKSFSRS 73
Query: 64 KDLKNHHNLHTGKR 77
L H H K+
Sbjct: 74 DHLSRHQRTHQNKK 87
>pdb|2KMK|A Chain A, Gfi-1 Zinc Fingers 3-5 Complexed With Dna
Length = 82
Score = 65.5 bits (158), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 43/78 (55%)
Query: 23 YGCPHCPMKLNTRRTLRMHLVVHRDTKAYQCVTCGKSFRRSKDLKNHHNLHTGKRPYTCP 82
+ C C TL HL++H DT+ Y C CGK F + D+K H +HTG++P+ C
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQ 61
Query: 83 WCSRTFANGSNCRSHKRR 100
C + F+ SN +H R+
Sbjct: 62 VCGKAFSQSSNLITHSRK 79
Score = 49.3 bits (116), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 38/72 (52%), Gaps = 1/72 (1%)
Query: 5 FKTKYRLKLHLDTHGET-PYGCPHCPMKLNTRRTLRMHLVVHRDTKAYQCVTCGKSFRRS 63
FK L HL H +T PY C +C + + + ++ H +H K ++C CGK+F +S
Sbjct: 11 FKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQVCGKAFSQS 70
Query: 64 KDLKNHHNLHTG 75
+L H HTG
Sbjct: 71 SNLITHSRKHTG 82
Score = 44.3 bits (103), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 28/48 (58%)
Query: 50 AYQCVTCGKSFRRSKDLKNHHNLHTGKRPYTCPWCSRTFANGSNCRSH 97
++ C CGKSF+RS L H +H+ RPY C +C + F S+ + H
Sbjct: 1 SFDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKH 48
>pdb|1UBD|C Chain C, Co-Crystal Structure Of Human Yy1 Zinc Finger Domain Bound
To The Adeno-Associated Virus P5 Initiator Element
Length = 124
Score = 64.7 bits (156), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/97 (36%), Positives = 50/97 (51%), Gaps = 4/97 (4%)
Query: 5 FKTKYRLKLHLDTHGETPYGCPHCPMKLNTRRTLRMHLVVHRDTKAYQCV--TCGKSFRR 62
F+ ++ HL THG + C C L+ H +VH K +QC CGK F
Sbjct: 17 FRDNSAMRKHLHTHGPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSL 76
Query: 63 SKDLKNHHNLHTGKRPYTCPW--CSRTFANGSNCRSH 97
+L+ H +HTG RPY CP+ C++ FA +N +SH
Sbjct: 77 DFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSH 113
Score = 47.8 bits (112), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 40/80 (50%), Gaps = 5/80 (6%)
Query: 24 GCPH--CPMKLNTRRTLRMHLVVHRDTKAYQCVTCGKSFRRSKDLKNHHNLHTGKRPYTC 81
CPH C +R HL H + + C CGK+F S LK H +HTG++P+ C
Sbjct: 7 ACPHKGCTKMFRDNSAMRKHLHTH-GPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQC 65
Query: 82 PW--CSRTFANGSNCRSHKR 99
+ C + F+ N R+H R
Sbjct: 66 TFEGCGKRFSLDFNLRTHVR 85
>pdb|2DLQ|A Chain A, Solution Structure Of The Tandem Four Zf-C2h2 Domain
Repeats Of Murine Gli-Kruppel Family Member Hkr3
Length = 124
Score = 60.8 bits (146), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 54/103 (52%), Gaps = 4/103 (3%)
Query: 4 RFKTKYRLKLHLDTH-GETPYGCPHCPMKLNTRRTLRMHLV---VHRDTKAYQCVTCGKS 59
+F +KY LK+H H GE P+ CP C + L H ++R + + C C ++
Sbjct: 16 KFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQVFTCSVCQET 75
Query: 60 FRRSKDLKNHHNLHTGKRPYTCPWCSRTFANGSNCRSHKRRMH 102
FRR +L+ H HTG+ PY C CS+ F + +SH ++H
Sbjct: 76 FRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLH 118
Score = 37.0 bits (84), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 27/54 (50%)
Query: 47 DTKAYQCVTCGKSFRRSKDLKNHHNLHTGKRPYTCPWCSRTFANGSNCRSHKRR 100
+ +C TC K F LK H+ HTG++P+ CP C + + N H+ R
Sbjct: 4 GSSGVECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEAR 57
>pdb|1A1H|A Chain A, Qgsr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac Site)
Length = 90
Score = 57.8 bits (138), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 44/85 (51%), Gaps = 7/85 (8%)
Query: 20 ETPYGCP--HCPMKLNTRRTLRMHLVVHRDTKAYQCVTCGKSFRRSKDLKNHHNLHTGKR 77
E PY CP C + + +L H+ +H K +QC C ++F RS L H HTG++
Sbjct: 2 ERPYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 78 PYTCPWCSRTFANGSNCRSHKRRMH 102
P+ C C R FA RS +R+ H
Sbjct: 62 PFACDICGRKFA-----RSDERKRH 81
Score = 39.3 bits (90), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 31/71 (43%), Gaps = 1/71 (1%)
Query: 4 RFKTKYRLKLHLDTH-GETPYGCPHCPMKLNTRRTLRMHLVVHRDTKAYQCVTCGKSFRR 62
RF L H+ H G+ P+ C C + L H+ H K + C CG+ F R
Sbjct: 15 RFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFAR 74
Query: 63 SKDLKNHHNLH 73
S + K H +H
Sbjct: 75 SDERKRHTKIH 85
>pdb|1A1F|A Chain A, Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc Site)
pdb|1A1G|A Chain A, Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gcgt Site)
Length = 90
Score = 57.4 bits (137), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 43/85 (50%), Gaps = 7/85 (8%)
Query: 20 ETPYGCP--HCPMKLNTRRTLRMHLVVHRDTKAYQCVTCGKSFRRSKDLKNHHNLHTGKR 77
E PY CP C + + L H+ +H K +QC C ++F RS L H HTG++
Sbjct: 2 ERPYACPVESCDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 78 PYTCPWCSRTFANGSNCRSHKRRMH 102
P+ C C R FA RS +R+ H
Sbjct: 62 PFACDICGRKFA-----RSDERKRH 81
Score = 39.7 bits (91), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 31/71 (43%), Gaps = 1/71 (1%)
Query: 4 RFKTKYRLKLHLDTH-GETPYGCPHCPMKLNTRRTLRMHLVVHRDTKAYQCVTCGKSFRR 62
RF L H+ H G+ P+ C C + L H+ H K + C CG+ F R
Sbjct: 15 RFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFAR 74
Query: 63 SKDLKNHHNLH 73
S + K H +H
Sbjct: 75 SDERKRHTKIH 85
>pdb|2JP9|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
pdb|2JPA|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
pdb|2PRT|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
Length = 119
Score = 57.4 bits (137), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 44/88 (50%), Gaps = 5/88 (5%)
Query: 11 LKLHLDTH-GETPYGCP--HCPMKLNTRRTLRMHLVVHRDTKAYQCVTCGKSFRRSKDLK 67
L++H H GE PY C C + + L+ H H K +QC TC + F RS LK
Sbjct: 24 LQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQCKTCQRKFSRSDHLK 83
Query: 68 NHHNLHTGKRPYTCPW--CSRTFANGSN 93
H HTG++P++C W C + FA
Sbjct: 84 THTRTHTGEKPFSCRWPSCQKKFARSDE 111
Score = 47.4 bits (111), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 39/82 (47%), Gaps = 4/82 (4%)
Query: 22 PYGC--PHCPMKLNTRRTLRMHLVVHRDTKAYQC--VTCGKSFRRSKDLKNHHNLHTGKR 77
P+ C P C + L+MH H K YQC C + F RS LK H HTG +
Sbjct: 6 PFMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVK 65
Query: 78 PYTCPWCSRTFANGSNCRSHKR 99
P+ C C R F+ + ++H R
Sbjct: 66 PFQCKTCQRKFSRSDHLKTHTR 87
Score = 31.6 bits (70), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Query: 56 CGKSFRRSKDLKNHHNLHTGKRPYTCPW--CSRTFANGSNCRSHKRR 100
C K + + L+ H HTG++PY C + C R F+ + H+RR
Sbjct: 14 CNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRR 60
>pdb|1AAY|A Chain A, Zif268 Zinc Finger-Dna Complex
pdb|1A1L|A Chain A, Zif268 Zinc Finger-Dna Complex (Gcac Site)
Length = 90
Score = 57.0 bits (136), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 39/80 (48%), Gaps = 2/80 (2%)
Query: 20 ETPYGCP--HCPMKLNTRRTLRMHLVVHRDTKAYQCVTCGKSFRRSKDLKNHHNLHTGKR 77
E PY CP C + + L H+ +H K +QC C ++F RS L H HTG++
Sbjct: 2 ERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 78 PYTCPWCSRTFANGSNCRSH 97
P+ C C R FA + H
Sbjct: 62 PFACDICGRKFARSDERKRH 81
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 31/71 (43%), Gaps = 1/71 (1%)
Query: 4 RFKTKYRLKLHLDTH-GETPYGCPHCPMKLNTRRTLRMHLVVHRDTKAYQCVTCGKSFRR 62
RF L H+ H G+ P+ C C + L H+ H K + C CG+ F R
Sbjct: 15 RFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFAR 74
Query: 63 SKDLKNHHNLH 73
S + K H +H
Sbjct: 75 SDERKRHTKIH 85
>pdb|1JK1|A Chain A, Zif268 D20a Mutant Bound To Wt Dna Site
pdb|1JK2|A Chain A, Zif268 D20a Mutant Bound To The Gct Dna Site
Length = 90
Score = 57.0 bits (136), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 39/80 (48%), Gaps = 2/80 (2%)
Query: 20 ETPYGCP--HCPMKLNTRRTLRMHLVVHRDTKAYQCVTCGKSFRRSKDLKNHHNLHTGKR 77
E PY CP C + + L H+ +H K +QC C ++F RS L H HTG++
Sbjct: 2 ERPYACPVESCDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 78 PYTCPWCSRTFANGSNCRSH 97
P+ C C R FA + H
Sbjct: 62 PFACDICGRKFARSDERKRH 81
Score = 39.7 bits (91), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 31/71 (43%), Gaps = 1/71 (1%)
Query: 4 RFKTKYRLKLHLDTH-GETPYGCPHCPMKLNTRRTLRMHLVVHRDTKAYQCVTCGKSFRR 62
RF L H+ H G+ P+ C C + L H+ H K + C CG+ F R
Sbjct: 15 RFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFAR 74
Query: 63 SKDLKNHHNLH 73
S + K H +H
Sbjct: 75 SDERKRHTKIH 85
>pdb|1A1I|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac
Site)
pdb|1A1J|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcgt
Site)
pdb|1A1K|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc
Site)
Length = 90
Score = 57.0 bits (136), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 39/80 (48%), Gaps = 2/80 (2%)
Query: 20 ETPYGCP--HCPMKLNTRRTLRMHLVVHRDTKAYQCVTCGKSFRRSKDLKNHHNLHTGKR 77
E PY CP C + + L H+ +H K +QC C ++F RS L H HTG++
Sbjct: 2 ERPYACPVESCDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 78 PYTCPWCSRTFANGSNCRSH 97
P+ C C R FA + H
Sbjct: 62 PFACDICGRKFARSDERKRH 81
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 31/71 (43%), Gaps = 1/71 (1%)
Query: 4 RFKTKYRLKLHLDTH-GETPYGCPHCPMKLNTRRTLRMHLVVHRDTKAYQCVTCGKSFRR 62
RF L H+ H G+ P+ C C + L H+ H K + C CG+ F R
Sbjct: 15 RFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFAR 74
Query: 63 SKDLKNHHNLH 73
S + K H +H
Sbjct: 75 SDERKRHTKIH 85
>pdb|1P47|A Chain A, Crystal Structure Of Tandem Zif268 Molecules Complexed
To Dna
pdb|1P47|B Chain B, Crystal Structure Of Tandem Zif268 Molecules Complexed
To Dna
Length = 87
Score = 56.6 bits (135), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 39/80 (48%), Gaps = 2/80 (2%)
Query: 20 ETPYGCP--HCPMKLNTRRTLRMHLVVHRDTKAYQCVTCGKSFRRSKDLKNHHNLHTGKR 77
E PY CP C + + L H+ +H K +QC C ++F RS L H HTG++
Sbjct: 1 ERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 60
Query: 78 PYTCPWCSRTFANGSNCRSH 97
P+ C C R FA + H
Sbjct: 61 PFACDICGRKFARSDERKRH 80
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 31/71 (43%), Gaps = 1/71 (1%)
Query: 4 RFKTKYRLKLHLDTH-GETPYGCPHCPMKLNTRRTLRMHLVVHRDTKAYQCVTCGKSFRR 62
RF L H+ H G+ P+ C C + L H+ H K + C CG+ F R
Sbjct: 14 RFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFAR 73
Query: 63 SKDLKNHHNLH 73
S + K H +H
Sbjct: 74 SDERKRHTKIH 84
>pdb|1ZAA|C Chain C, Zinc Finger-Dna Recognition: Crystal Structure Of A
Zif268- Dna Complex At 2.1 Angstroms
Length = 87
Score = 56.6 bits (135), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 39/80 (48%), Gaps = 2/80 (2%)
Query: 20 ETPYGCP--HCPMKLNTRRTLRMHLVVHRDTKAYQCVTCGKSFRRSKDLKNHHNLHTGKR 77
E PY CP C + + L H+ +H K +QC C ++F RS L H HTG++
Sbjct: 2 ERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 78 PYTCPWCSRTFANGSNCRSH 97
P+ C C R FA + H
Sbjct: 62 PFACDICGRKFARSDERKRH 81
Score = 38.9 bits (89), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 31/71 (43%), Gaps = 1/71 (1%)
Query: 4 RFKTKYRLKLHLDTH-GETPYGCPHCPMKLNTRRTLRMHLVVHRDTKAYQCVTCGKSFRR 62
RF L H+ H G+ P+ C C + L H+ H K + C CG+ F R
Sbjct: 15 RFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFAR 74
Query: 63 SKDLKNHHNLH 73
S + K H +H
Sbjct: 75 SDERKRHTKIH 85
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 26/45 (57%)
Query: 55 TCGKSFRRSKDLKNHHNLHTGKRPYTCPWCSRTFANGSNCRSHKR 99
+C + F RS +L H +HTG++P+ C C R F+ + +H R
Sbjct: 11 SCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIR 55
>pdb|1G2F|C Chain C, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX
(Tatazf;clone #6)
pdb|1G2F|F Chain F, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX
(Tatazf;clone #6)
Length = 90
Score = 55.5 bits (132), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 37/72 (51%), Gaps = 2/72 (2%)
Query: 20 ETPYGCP--HCPMKLNTRRTLRMHLVVHRDTKAYQCVTCGKSFRRSKDLKNHHNLHTGKR 77
E PY CP C + + + L H+ +H K +QC C ++F + L H HTG++
Sbjct: 2 ERPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIRTHTGEK 61
Query: 78 PYTCPWCSRTFA 89
P+ C C R FA
Sbjct: 62 PFACDICGRKFA 73
Score = 37.0 bits (84), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
Query: 4 RFKTKYRLKLHLDTH-GETPYGCPHCPMKLNTRRTLRMHLVVHRDTKAYQCVTCGKSF 60
RF K L H+ H G+ P+ C C + + +L H+ H K + C CG+ F
Sbjct: 15 RFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIRTHTGEKPFACDICGRKF 72
>pdb|1G2D|C Chain C, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX
(CLONE #2)
pdb|1G2D|F Chain F, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX
(CLONE #2)
Length = 90
Score = 54.7 bits (130), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 37/72 (51%), Gaps = 2/72 (2%)
Query: 20 ETPYGCP--HCPMKLNTRRTLRMHLVVHRDTKAYQCVTCGKSFRRSKDLKNHHNLHTGKR 77
E PY CP C + + + L H+ +H K +QC C ++F + L H HTG++
Sbjct: 2 ERPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIRTHTGEK 61
Query: 78 PYTCPWCSRTFA 89
P+ C C R FA
Sbjct: 62 PFACDICGRKFA 73
Score = 35.0 bits (79), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 24/45 (53%)
Query: 55 TCGKSFRRSKDLKNHHNLHTGKRPYTCPWCSRTFANGSNCRSHKR 99
+C + F + +L H +HTG++P+ C C R F+ + H R
Sbjct: 11 SCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIR 55
Score = 34.7 bits (78), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 25/58 (43%), Gaps = 1/58 (1%)
Query: 4 RFKTKYRLKLHLDTH-GETPYGCPHCPMKLNTRRTLRMHLVVHRDTKAYQCVTCGKSF 60
RF K L H+ H G+ P+ C C + L H+ H K + C CG+ F
Sbjct: 15 RFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIRTHTGEKPFACDICGRKF 72
>pdb|1X6E|A Chain A, Solution Structures Of The C2h2 Type Zinc Finger Domain
Of Human Zinc Finger Protein 24
Length = 72
Score = 52.8 bits (125), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 23/51 (45%), Positives = 31/51 (60%)
Query: 49 KAYQCVTCGKSFRRSKDLKNHHNLHTGKRPYTCPWCSRTFANGSNCRSHKR 99
K Y CV CGK+F RS L H +HTG++PY C C + F+ S +H+R
Sbjct: 13 KPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQR 63
Score = 50.1 bits (118), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 29/55 (52%)
Query: 20 ETPYGCPHCPMKLNTRRTLRMHLVVHRDTKAYQCVTCGKSFRRSKDLKNHHNLHT 74
E PYGC C + L H VH K Y+C+ CGK+F ++ L NH +HT
Sbjct: 12 EKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIHT 66
>pdb|2RPC|A Chain A, Solution Structure Of The Tandem Zf-C2h2 Domains From The
Human Zinc Finger Protein Zic 3
Length = 155
Score = 50.1 bits (118), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 40/77 (51%), Gaps = 4/77 (5%)
Query: 25 CPHCPMKLNTRRTLRMHLVVHRDTKAYQCV--TCGKSFRRSKDLKNHHNLHTGKRPYTCP 82
CP + L H+ VH K + C CGK F RS++LK H HTG++P+ C
Sbjct: 65 CPREGKSFKAKYKLVNHIRVHTGEKPFPCPFPGCGKIFARSENLKIHKRTHTGEKPFKCE 124
Query: 83 W--CSRTFANGSNCRSH 97
+ C R FAN S+ + H
Sbjct: 125 FEGCDRRFANSSDRKKH 141
Score = 42.0 bits (97), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 30/50 (60%), Gaps = 2/50 (4%)
Query: 52 QCVTCGKSFRRSKDLKNHHNLHTGKRPYTCPW--CSRTFANGSNCRSHKR 99
+C GKSF+ L NH +HTG++P+ CP+ C + FA N + HKR
Sbjct: 64 ECPREGKSFKAKYKLVNHIRVHTGEKPFPCPFPGCGKIFARSENLKIHKR 113
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 37/78 (47%), Gaps = 5/78 (6%)
Query: 5 FKTKYRLKLHLDTH-GETPYGCP--HCPMKLNTRRTLRMHLVVHRDTKAYQCV--TCGKS 59
FK KY+L H+ H GE P+ CP C L++H H K ++C C +
Sbjct: 72 FKAKYKLVNHIRVHTGEKPFPCPFPGCGKIFARSENLKIHKRTHTGEKPFKCEFEGCDRR 131
Query: 60 FRRSKDLKNHHNLHTGKR 77
F S D K H ++HT +
Sbjct: 132 FANSSDRKKHMHVHTSDK 149
>pdb|2GLI|A Chain A, Five-Finger GliDNA COMPLEX
Length = 155
Score = 49.3 bits (116), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 52/106 (49%), Gaps = 8/106 (7%)
Query: 5 FKTKYRLKLHLDTH-GETPYGC--PHCPMKLNTRRTLRMHLVVHRDTKAYQCV--TCGKS 59
FK +Y L +H+ H GE P+ C C + L+ HL H K Y C C K+
Sbjct: 49 FKAQYMLVVHMRRHTGEKPHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKA 108
Query: 60 FRRSKDLKNHHN-LHTGKRPYTC--PWCSRTFANGSNCRSHKRRMH 102
F + D H N H+ ++PY C P C++ + + S+ R H + +H
Sbjct: 109 FSNASDRAKHQNRTHSNEKPYVCKLPGCTKRYTDPSSLRKHVKTVH 154
Score = 47.0 bits (110), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 55/114 (48%), Gaps = 13/114 (11%)
Query: 5 FKTKYRLKLHLDT---HGETPY------GCPHCPMKLNTRRTLRMHLVVHRDTKAYQCV- 54
F ++ +L H+++ HGE GC + L +H+ H K ++C
Sbjct: 13 FDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRRHTGEKPHKCTF 72
Query: 55 -TCGKSFRRSKDLKNHHNLHTGKRPYTC--PWCSRTFANGSNCRSHKRRMHPEE 105
C KS+ R ++LK H HTG++PY C CS+ F+N S+ H+ R H E
Sbjct: 73 EGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTHSNE 126
>pdb|2COT|A Chain A, Solution Structure Of The First And Second Zf-C2h2
Domain Of Zinc Finger Protein 435
Length = 77
Score = 48.9 bits (115), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 30/54 (55%)
Query: 46 RDTKAYQCVTCGKSFRRSKDLKNHHNLHTGKRPYTCPWCSRTFANGSNCRSHKR 99
R+ + Y+C CGKSF S DL H HTG++PY C C + F S+ H R
Sbjct: 14 RERRRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHR 67
Score = 40.0 bits (92), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 26/58 (44%)
Query: 23 YGCPHCPMKLNTRRTLRMHLVVHRDTKAYQCVTCGKSFRRSKDLKNHHNLHTGKRPYT 80
Y C C + L H H K Y+C CGK+F + L HH +HTG P +
Sbjct: 19 YKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTGSGPSS 76
>pdb|2LT7|A Chain A, Solution Nmr Structure Of Kaiso Zinc Finger Dna Binding
Domain In Complex With Kaiso Binding Site Dna
pdb|4F6M|A Chain A, Crystal Structure Of Kaiso Zinc Finger Dna Binding Domain
In Complex With Kaiso Binding Site Dna
pdb|4F6N|A Chain A, Crystal Structure Of Kaiso Zinc Finger Dna Binding Protein
In Complex With Methylated Cpg Site Dna
Length = 133
Score = 47.8 bits (112), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 43/102 (42%)
Query: 4 RFKTKYRLKLHLDTHGETPYGCPHCPMKLNTRRTLRMHLVVHRDTKAYQCVTCGKSFRRS 63
R K K+ L G Y C C +LR H +H K Y C C K F +
Sbjct: 4 RMKVKHDDHYELIVDGRVYYICIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLA 63
Query: 64 KDLKNHHNLHTGKRPYTCPWCSRTFANGSNCRSHKRRMHPEE 105
+ H HTG+R Y C C ++F N SH + +H ++
Sbjct: 64 EYRTKHEIHHTGERRYQCLACGKSFINYQFMSSHIKSVHSQD 105
>pdb|2LCE|A Chain A, Chemical Shift Assignment Of Hr4436b From Homo Sapiens,
Northeast Structural Genomics Consortium
Length = 74
Score = 47.4 bits (111), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 29/59 (49%)
Query: 20 ETPYGCPHCPMKLNTRRTLRMHLVVHRDTKAYQCVTCGKSFRRSKDLKNHHNLHTGKRP 78
+ PY C C + L H VH K Y+C CG F R +LK H +H+G++P
Sbjct: 15 DKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGEKP 73
Score = 43.9 bits (102), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 29/51 (56%)
Query: 49 KAYQCVTCGKSFRRSKDLKNHHNLHTGKRPYTCPWCSRTFANGSNCRSHKR 99
K Y+C C SFR +L +H +HTG++PY C C F +N ++H R
Sbjct: 16 KPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTR 66
>pdb|2EE8|A Chain A, Solution Structure Of Three Zf-C2h2 Domains From Mouse
Protein Odd-Skipped-Related 2 Splicing Isoform 2
Length = 106
Score = 46.2 bits (108), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 34/76 (44%)
Query: 23 YGCPHCPMKLNTRRTLRMHLVVHRDTKAYQCVTCGKSFRRSKDLKNHHNLHTGKRPYTCP 82
+ C C L +H H D + Y C C K+FRR L++H +H+ ++P+ C
Sbjct: 18 FICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQ 77
Query: 83 WCSRTFANGSNCRSHK 98
C + F HK
Sbjct: 78 ECGKGFCQSRTLAVHK 93
Score = 43.5 bits (101), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 33/70 (47%), Gaps = 1/70 (1%)
Query: 5 FKTKYRLKLHLDTH-GETPYGCPHCPMKLNTRRTLRMHLVVHRDTKAYQCVTCGKSFRRS 63
F Y L +H TH E PY C C + LR H +H K ++C CGK F +S
Sbjct: 27 FTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQECGKGFCQS 86
Query: 64 KDLKNHHNLH 73
+ L H LH
Sbjct: 87 RTLAVHKTLH 96
Score = 42.7 bits (99), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 38/88 (43%), Gaps = 3/88 (3%)
Query: 49 KAYQCVTCGKSFRRSKDLKNHHNLHTGKRPYTCPWCSRTFANGSNCRSHKRRMHPEE--L 106
K + C CG+ F +S +L H HT +RPYTC C + F + R H R +H +E
Sbjct: 16 KEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDH-RYIHSKEKPF 74
Query: 107 KLYESSLGIVHKEKKKFDVSLHPPPQPP 134
K E G +LH P
Sbjct: 75 KCQECGKGFCQSRTLAVHKTLHMQTSSP 102
>pdb|1LLM|C Chain C, Crystal Structure Of A Zif23-Gcn4 Chimera Bound To Dna
pdb|1LLM|D Chain D, Crystal Structure Of A Zif23-Gcn4 Chimera Bound To Dna
Length = 88
Score = 45.8 bits (107), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 28/54 (51%)
Query: 49 KAYQCVTCGKSFRRSKDLKNHHNLHTGKRPYTCPWCSRTFANGSNCRSHKRRMH 102
K +QC C ++F RS L H HTG++P+ C C R FA + H+ H
Sbjct: 2 KPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQH 55
Score = 32.7 bits (73), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 23/52 (44%)
Query: 22 PYGCPHCPMKLNTRRTLRMHLVVHRDTKAYQCVTCGKSFRRSKDLKNHHNLH 73
P+ C C + L H+ H K + C CG+ F RS + K H ++
Sbjct: 3 PFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQ 54
>pdb|2WBS|A Chain A, Crystal Structure Of The Zinc Finger Domain Of Klf4 Bound
To Its Target Dna
Length = 89
Score = 44.7 bits (104), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
Query: 38 LRMHLVVHRDTKAYQCV--TCGKSFRRSKDLKNHHNLHTGKRPYTCPWCSRTFANGSNCR 95
L+ HL H K Y C CG F RS +L H+ HTG RP+ C C R F+ +
Sbjct: 23 LKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCDRAFSRSDHLA 82
Query: 96 SHKRR 100
H +R
Sbjct: 83 LHMKR 87
Score = 37.0 bits (84), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
Query: 54 VTCGKSFRRSKDLKNHHNLHTGKRPYTCPW--CSRTFANGSNCRSHKRR 100
CGK++ +S LK H HTG++PY C W C FA H R+
Sbjct: 11 AGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRK 59
>pdb|2WBU|A Chain A, Crystal Structure Of The Zinc Finger Domain Of Klf4 Bound
To Its Target Dna
Length = 90
Score = 44.7 bits (104), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
Query: 38 LRMHLVVHRDTKAYQCV--TCGKSFRRSKDLKNHHNLHTGKRPYTCPWCSRTFANGSNCR 95
L+ HL H K Y C CG F RS +L H+ HTG RP+ C C R F+ +
Sbjct: 24 LKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCDRAFSRSDHLA 83
Query: 96 SHKRR 100
H +R
Sbjct: 84 LHMKR 88
Score = 37.0 bits (84), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
Query: 54 VTCGKSFRRSKDLKNHHNLHTGKRPYTCPW--CSRTFANGSNCRSHKRR 100
CGK++ +S LK H HTG++PY C W C FA H R+
Sbjct: 12 AGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRK 60
>pdb|2EBT|A Chain A, Solution Structure Of Three Tandem Repeats Of Zf-C2h2
Domains From Human Kruppel-Like Factor 5
Length = 100
Score = 44.3 bits (103), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 36/77 (46%), Gaps = 2/77 (2%)
Query: 26 PHCPMKLNTRRTLRMHLVVHRDTKAYQCV--TCGKSFRRSKDLKNHHNLHTGKRPYTCPW 83
P C L+ HL H K Y+C C F RS +L H+ HTG +P+ C
Sbjct: 21 PGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCGV 80
Query: 84 CSRTFANGSNCRSHKRR 100
C+R+F+ + H +R
Sbjct: 81 CNRSFSRSDHLALHMKR 97
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 29/66 (43%), Gaps = 3/66 (4%)
Query: 11 LKLHLDTH-GETPYGC--PHCPMKLNTRRTLRMHLVVHRDTKAYQCVTCGKSFRRSKDLK 67
LK HL TH GE PY C C + L H H K +QC C +SF RS L
Sbjct: 33 LKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCGVCNRSFSRSDHLA 92
Query: 68 NHHNLH 73
H H
Sbjct: 93 LHMKRH 98
>pdb|2YT9|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 345
In Zinc Finger Protein 278
Length = 95
Score = 43.5 bits (101), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 37/75 (49%), Gaps = 4/75 (5%)
Query: 5 FKTKYRLKLHLDTH-GETPYGCPHCPMKLNTRRTLRMHLVVHRDT--KAYQCVTCGKSFR 61
F+ Y L H +H GE PY CP C ++ + + H+ H + K Y C +CGK F
Sbjct: 17 FRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQSCGKGFS 76
Query: 62 RSKDLKNH-HNLHTG 75
R L H +H+G
Sbjct: 77 RPDHLNGHIKQVHSG 91
Score = 38.9 bits (89), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 35/88 (39%), Gaps = 2/88 (2%)
Query: 17 THGETPYGCPHCPMKLNTRRTLRMHLVVHRDTKAYQCVTCGKSFRRSKDLKNHHNLHTGK 76
+ G + C C L H + H K Y C CG F+R + H H G
Sbjct: 2 SSGSSGVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGS 61
Query: 77 --RPYTCPWCSRTFANGSNCRSHKRRMH 102
+PY C C + F+ + H +++H
Sbjct: 62 VGKPYICQSCGKGFSRPDHLNGHIKQVH 89
>pdb|2CSH|A Chain A, Solution Structure Of Tandem Repeat Of The Zf-C2h2
Domains Of Human Zinc Finger Protein 297b
Length = 110
Score = 42.7 bits (99), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 33/73 (45%), Gaps = 1/73 (1%)
Query: 16 DTHGETPYGCPHCPMKLNTRRTLRMHLVVHRDTKAYQCVTCGKSFRRSKDLKNHHNLHTG 75
+ G+ Y C C + H+ +H + Y C CGK F+ L H +HTG
Sbjct: 4 GSSGDKLYPC-QCGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTG 62
Query: 76 KRPYTCPWCSRTF 88
+PY C C++ F
Sbjct: 63 IKPYECNICAKRF 75
Score = 36.2 bits (82), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
Query: 5 FKTKYRLKLHLDTH-GETPYGCPHCPMKLNTRRTLRMHLVVHRDTKAYQCVTCGKSF 60
F K + H+ H G PYGC C K + L H+ +H K Y+C C K F
Sbjct: 19 FTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNICAKRF 75
>pdb|2DMD|A Chain A, Solution Structure Of The N-Terminal C2h2 Type
Zinc-Binding Domain Of The Zinc Finger Protein 64,
Isoforms 1 And 2
Length = 96
Score = 42.0 bits (97), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 33/72 (45%), Gaps = 1/72 (1%)
Query: 5 FKTKYRLKLHLDTH-GETPYGCPHCPMKLNTRRTLRMHLVVHRDTKAYQCVTCGKSFRRS 63
F K +LK H+ H G PY C C +L HL +H D + ++C C + R S
Sbjct: 18 FSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQICPYASRNS 77
Query: 64 KDLKNHHNLHTG 75
L H HTG
Sbjct: 78 SQLTVHLRSHTG 89
Score = 40.0 bits (92), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 34/78 (43%)
Query: 22 PYGCPHCPMKLNTRRTLRMHLVVHRDTKAYQCVTCGKSFRRSKDLKNHHNLHTGKRPYTC 81
P+ C C + + L+ H+ H K Y+C TC + S L H +H+ +RP+ C
Sbjct: 8 PHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKC 67
Query: 82 PWCSRTFANGSNCRSHKR 99
C N S H R
Sbjct: 68 QICPYASRNSSQLTVHLR 85
>pdb|3UK3|C Chain C, Crystal Structure Of Znf217 Bound To Dna
pdb|3UK3|D Chain D, Crystal Structure Of Znf217 Bound To Dna
pdb|4F2J|C Chain C, Crystal Structure Of Znf217 Bound To Dna, P6522 Crystal
Form
pdb|4IS1|C Chain C, Crystal Structure Of Znf217 Bound To Dna
pdb|4IS1|D Chain D, Crystal Structure Of Znf217 Bound To Dna
Length = 57
Score = 40.8 bits (94), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 27/51 (52%)
Query: 52 QCVTCGKSFRRSKDLKNHHNLHTGKRPYTCPWCSRTFANGSNCRSHKRRMH 102
+C CGK FR + L H HTG++PY C +C A ++ R H R H
Sbjct: 6 ECSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERHH 56
Score = 36.6 bits (83), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Query: 5 FKTKYRLKLHLDTH-GETPYGCPHCPMKLNTRRTLRMHLVVH 45
F++ Y L +HL TH GE PY C C + +LR HL H
Sbjct: 14 FRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERH 55
>pdb|2ADR|A Chain A, Adr1 Dna-Binding Domain From Saccharomyces Cerevisiae,
Nmr, 25 Structures
Length = 60
Score = 40.4 bits (93), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 30/57 (52%)
Query: 50 AYQCVTCGKSFRRSKDLKNHHNLHTGKRPYTCPWCSRTFANGSNCRSHKRRMHPEEL 106
++ C C ++F R + LK H+ HT ++PY C C+R F H +++H L
Sbjct: 2 SFVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSGNL 58
>pdb|2EPA|A Chain A, Solution Structure Of The First And Second Zf-C2h2
Domains From Human Krueppel-Like Factor 10
Length = 72
Score = 40.0 bits (92), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
Query: 56 CGKSFRRSKDLKNHHNLHTGKRPYTCPW--CSRTFANGSNCRSHKR 99
CGK++ +S LK H HTG++P++C W C R FA H+R
Sbjct: 25 CGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRR 70
>pdb|1F2I|G Chain G, Cocrystal Structure Of Selected Zinc Finger Dimer Bound
To Dna
pdb|1F2I|H Chain H, Cocrystal Structure Of Selected Zinc Finger Dimer Bound
To Dna
pdb|1F2I|I Chain I, Cocrystal Structure Of Selected Zinc Finger Dimer Bound
To Dna
pdb|1F2I|J Chain J, Cocrystal Structure Of Selected Zinc Finger Dimer Bound
To Dna
pdb|1F2I|K Chain K, Cocrystal Structure Of Selected Zinc Finger Dimer Bound
To Dna
pdb|1F2I|L Chain L, Cocrystal Structure Of Selected Zinc Finger Dimer Bound
To Dna
Length = 73
Score = 40.0 bits (92), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
Query: 49 KAYQC--VTCGKSFRRSKDLKNHHNLHTGKRPYTCPWCSRTFANGSNCRSHKR 99
+ Y C +C + F RS +L H +HTG++P+ C C R F+ + +H R
Sbjct: 18 RPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIR 70
Score = 36.2 bits (82), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
Query: 22 PYGCP--HCPMKLNTRRTLRMHLVVHRDTKAYQCVTCGKSFRRSKDLKNHHNLHT 74
PY CP C + + L H+ +H K +QC C ++F RS L H HT
Sbjct: 19 PYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHT 73
>pdb|2EON|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
397- 429) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 39.7 bits (91), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 22/30 (73%)
Query: 49 KAYQCVTCGKSFRRSKDLKNHHNLHTGKRP 78
K Y+C CGK+FR S L HH++H+G+RP
Sbjct: 11 KPYKCQVCGKAFRVSSHLVQHHSVHSGERP 40
>pdb|2ELY|A Chain A, Solution Structure Of The Third Zf-C2h2 Domain From
Human Zinc Finger Protein 224
Length = 46
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 20/30 (66%)
Query: 49 KAYQCVTCGKSFRRSKDLKNHHNLHTGKRP 78
K ++CV CGK F R L HH LHTG++P
Sbjct: 11 KPFKCVECGKGFSRRSALNVHHKLHTGEKP 40
>pdb|1TF6|A Chain A, Co-crystal Structure Of Xenopus Tfiiia Zinc Finger Domain
Bound To The 5s Ribosomal Rna Gene Internal Control
Region
pdb|1TF6|D Chain D, Co-crystal Structure Of Xenopus Tfiiia Zinc Finger Domain
Bound To The 5s Ribosomal Rna Gene Internal Control
Region
Length = 190
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 49/104 (47%), Gaps = 9/104 (8%)
Query: 5 FKTKYRLKLHLDTH-GETPYGCPH--CPMKLNTRRTLRMHLVVHRDTK--AYQC--VTCG 57
F + + L H TH GE + C C ++ T+ ++ H + K Y C CG
Sbjct: 54 FTSLHHLTRHSLTHTGEKNFTCDSDGCDLRFTTKANMKKHFNRFHNIKICVYVCHFENCG 113
Query: 58 KSFRRSKDLKNHHNLHTGKRPYTCP--WCSRTFANGSNCRSHKR 99
K+F++ LK H HT + PY CP C + F+ S + H++
Sbjct: 114 KAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEK 157
Score = 35.0 bits (79), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 35/86 (40%), Gaps = 4/86 (4%)
Query: 28 CPMKLNTRRTLRMHLVVHRDTKAYQC--VTCGKSFRRSKDLKNHHNLHTGKRPYTC--PW 83
C N L+ HL H K + C C K F L H HTG++ +TC
Sbjct: 20 CGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSDG 79
Query: 84 CSRTFANGSNCRSHKRRMHPEELKLY 109
C F +N + H R H ++ +Y
Sbjct: 80 CDLRFTTKANMKKHFNRFHNIKICVY 105
Score = 27.3 bits (59), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 37/95 (38%), Gaps = 10/95 (10%)
Query: 4 RFKTKYRLKLHLDTHGETP---YGC--PHCPMKLNTRRTLRMHLVVHRDTKAYQC--VTC 56
RF TK +K H + Y C +C L++H H Y+C C
Sbjct: 83 RFTTKANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGC 142
Query: 57 GKSFRRSKDLKNHHNLHTG---KRPYTCPWCSRTF 88
K F LK H +H G K+ +C + +T+
Sbjct: 143 DKRFSLPSRLKRHEKVHAGYPCKKDDSCSFVGKTW 177
>pdb|4GZN|C Chain C, Mouse Zfp57 Zinc Fingers In Complex With Methylated Dna
Length = 60
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 25/49 (51%)
Query: 49 KAYQCVTCGKSFRRSKDLKNHHNLHTGKRPYTCPWCSRTFANGSNCRSH 97
+ + C CGK++R + L H H G RP +CP C + F + S H
Sbjct: 3 RPFFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRH 51
Score = 29.3 bits (64), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 21/57 (36%)
Query: 20 ETPYGCPHCPMKLNTRRTLRMHLVVHRDTKAYQCVTCGKSFRRSKDLKNHHNLHTGK 76
E P+ C C L H H + C CGK FR ++ H +H K
Sbjct: 2 ERPFFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVHQNK 58
>pdb|1X6H|A Chain A, Solution Structures Of The C2h2 Type Zinc Finger Domain
Of Human Transcriptional Repressor Ctcf
Length = 86
Score = 37.7 bits (86), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 26/57 (45%), Gaps = 4/57 (7%)
Query: 19 GETPYGCPHCPMKLNTRRTLRMHLVVHRDTK----AYQCVTCGKSFRRSKDLKNHHN 71
GE PY C HC ++ L MH + D A+ C CGK+F R + H +
Sbjct: 12 GEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHAD 68
Score = 26.9 bits (58), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 9/16 (56%), Positives = 12/16 (75%)
Query: 73 HTGKRPYTCPWCSRTF 88
HTG++PY C C +TF
Sbjct: 10 HTGEKPYACSHCDKTF 25
>pdb|2EQ2|A Chain A, Solution Structure Of The 16th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 347
Length = 46
Score = 36.2 bits (82), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 20/30 (66%)
Query: 49 KAYQCVTCGKSFRRSKDLKNHHNLHTGKRP 78
K YQC CGK+F ++ L H +HTG++P
Sbjct: 11 KPYQCNECGKAFSQTSKLARHQRVHTGEKP 40
>pdb|2EMJ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
612- 644) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 35.8 bits (81), Expect = 0.010, Method: Composition-based stats.
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 49 KAYQCVTCGKSFRRSKDLKNHHNLHTGKRP 78
K ++C CGKSF S L H +HTG++P
Sbjct: 11 KPFECAECGKSFSISSQLATHQRIHTGEKP 40
>pdb|2EPT|A Chain A, Solution Structure Of The First C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 32
Length = 41
Score = 35.8 bits (81), Expect = 0.010, Method: Composition-based stats.
Identities = 14/30 (46%), Positives = 18/30 (60%)
Query: 49 KAYQCVTCGKSFRRSKDLKNHHNLHTGKRP 78
+ Y+C CGKSFR+ L H +HTG P
Sbjct: 9 RVYECQECGKSFRQKGSLTLHERIHTGSGP 38
>pdb|2EP2|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
603- 635) Of Human Zinc Finger Protein 484
Length = 46
Score = 35.8 bits (81), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 49 KAYQCVTCGKSFRRSKDLKNHHNLHTGKRP 78
K Y+C CGKSF + L H +HTG++P
Sbjct: 11 KPYECSICGKSFTKKSQLHVHQQIHTGEKP 40
>pdb|2EM6|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
199- 231) Of Human Zinc Finger Protein 224
Length = 46
Score = 35.8 bits (81), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 20/30 (66%)
Query: 49 KAYQCVTCGKSFRRSKDLKNHHNLHTGKRP 78
K Y+C CGK F +S L+ H +HTG++P
Sbjct: 11 KCYKCDVCGKEFSQSSHLQTHQRVHTGEKP 40
>pdb|2ENA|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
311- 343) Of Human Zinc Finger Protein 224
Length = 46
Score = 35.4 bits (80), Expect = 0.014, Method: Composition-based stats.
Identities = 14/30 (46%), Positives = 21/30 (70%)
Query: 49 KAYQCVTCGKSFRRSKDLKNHHNLHTGKRP 78
K ++C TC KSFR+ L +H +HTG++P
Sbjct: 11 KPFRCDTCDKSFRQRSALNSHRMIHTGEKP 40
>pdb|2EM7|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
339- 371) Of Human Zinc Finger Protein 224
Length = 46
Score = 35.4 bits (80), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 20/30 (66%)
Query: 49 KAYQCVTCGKSFRRSKDLKNHHNLHTGKRP 78
K Y+C CGK F +DL HH +HTG++P
Sbjct: 11 KPYKCEECGKGFICRRDLYTHHMVHTGEKP 40
>pdb|2EMA|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
312- 344) Of Human Zinc Finger Protein 347
Length = 46
Score = 35.4 bits (80), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 49 KAYQCVTCGKSFRRSKDLKNHHNLHTGKRP 78
K Y+C CGK F R+ L H +HTG++P
Sbjct: 11 KRYKCNECGKVFSRNSQLSQHQKIHTGEKP 40
>pdb|2YTA|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 3 In
Zinc Finger Protein 32
Length = 41
Score = 35.0 bits (79), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 18/32 (56%)
Query: 49 KAYQCVTCGKSFRRSKDLKNHHNLHTGKRPYT 80
K YQC CGKSF + L H LHTG P +
Sbjct: 9 KPYQCKECGKSFSQRGSLAVHERLHTGSGPSS 40
>pdb|2EQ1|A Chain A, Solution Structure Of The 9th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 347
Length = 46
Score = 35.0 bits (79), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 20/30 (66%)
Query: 49 KAYQCVTCGKSFRRSKDLKNHHNLHTGKRP 78
K Y+C CGK+FR +L H +HTG++P
Sbjct: 11 KPYKCNECGKAFRAHSNLTTHQVIHTGEKP 40
>pdb|2EM8|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
423- 455) Of Human Zinc Finger Protein 224
Length = 46
Score = 35.0 bits (79), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 20/29 (68%)
Query: 49 KAYQCVTCGKSFRRSKDLKNHHNLHTGKR 77
K Y+CV CGK ++R DL H +HTG++
Sbjct: 11 KPYKCVECGKGYKRRLDLDFHQRVHTGEK 39
>pdb|2YTM|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
696- 728) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 35.0 bits (79), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 49 KAYQCVTCGKSFRRSKDLKNHHNLHTGKRP 78
K Y+C+ CGK+F + H LHTG+RP
Sbjct: 11 KPYKCMECGKAFGDNSSCTQHQRLHTGQRP 40
Score = 27.3 bits (59), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 9/24 (37%), Positives = 15/24 (62%)
Query: 76 KRPYTCPWCSRTFANGSNCRSHKR 99
++PY C C + F + S+C H+R
Sbjct: 10 EKPYKCMECGKAFGDNSSCTQHQR 33
>pdb|2EQ3|A Chain A, Solution Structure Of The 17th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 347
Length = 46
Score = 34.7 bits (78), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 18/30 (60%)
Query: 49 KAYQCVTCGKSFRRSKDLKNHHNLHTGKRP 78
K Y+C CGK+F L H +HTGK+P
Sbjct: 11 KPYECNQCGKAFSVRSSLTTHQAIHTGKKP 40
>pdb|2EQ0|A Chain A, Solution Structure Of The 8th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 347
Length = 46
Score = 34.7 bits (78), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 20/30 (66%)
Query: 49 KAYQCVTCGKSFRRSKDLKNHHNLHTGKRP 78
K Y+C CGK FRR+ L H +HTG++P
Sbjct: 11 KPYKCHECGKVFRRNSHLARHQLIHTGEKP 40
>pdb|2EMF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
379- 411) Of Human Zinc Finger Protein 484
Length = 46
Score = 34.7 bits (78), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 49 KAYQCVTCGKSFRRSKDLKNHHNLHTGKRP 78
K ++C CGK+F R L H +HTG++P
Sbjct: 11 KHFECTECGKAFTRKSTLSMHQKIHTGEKP 40
>pdb|2YTR|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
760- 792) Of Human Zinc Finger Protein 347
Length = 46
Score = 34.7 bits (78), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 20/30 (66%)
Query: 49 KAYQCVTCGKSFRRSKDLKNHHNLHTGKRP 78
K Y+C CGK+F ++ L H +HTG++P
Sbjct: 11 KPYKCNECGKAFSQTSKLARHQRIHTGEKP 40
>pdb|2EML|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
752- 784) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 34.7 bits (78), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 49 KAYQCVTCGKSFRRSKDLKNHHNLHTGKRP 78
K Y+C CGK+F + L H +H+GK+P
Sbjct: 11 KPYECSVCGKAFSHRQSLSVHQRIHSGKKP 40
>pdb|2YTP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
687- 719) Of Human Zinc Finger Protein 484
Length = 46
Score = 34.3 bits (77), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 18/28 (64%)
Query: 51 YQCVTCGKSFRRSKDLKNHHNLHTGKRP 78
Y+C CGK+F R L H +HTG++P
Sbjct: 13 YECSECGKAFARKSTLIMHQRIHTGEKP 40
>pdb|2YTD|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
426- 458) Of Human Zinc Finger Protein 473
Length = 46
Score = 34.3 bits (77), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 18/30 (60%)
Query: 49 KAYQCVTCGKSFRRSKDLKNHHNLHTGKRP 78
K Y+C CGK+F R L H +HTG RP
Sbjct: 11 KPYKCSECGKAFHRHTHLNEHRRIHTGYRP 40
>pdb|2YRJ|A Chain A, Solution Structure Of The C2h2-Type Zinc Finger Domain
(781- 813) From Zinc Finger Protein 473
Length = 46
Score = 34.3 bits (77), Expect = 0.030, Method: Composition-based stats.
Identities = 13/30 (43%), Positives = 20/30 (66%)
Query: 49 KAYQCVTCGKSFRRSKDLKNHHNLHTGKRP 78
K Y+C CGK+F + +L H +HTG++P
Sbjct: 11 KPYRCGECGKAFAQKANLTQHQRIHTGEKP 40
>pdb|2EMK|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
668- 700) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 33.9 bits (76), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 20/30 (66%)
Query: 49 KAYQCVTCGKSFRRSKDLKNHHNLHTGKRP 78
K Y+C CGK+F ++ L H +HTG++P
Sbjct: 11 KPYECKECGKAFSQTTHLIQHQRVHTGEKP 40
>pdb|1BBO|A Chain A, High-Resolution Solution Structure Of The Double
Cys2His2 Zinc Finger From The Human Enhancer Binding
Protein Mbp-1
Length = 57
Score = 33.9 bits (76), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 22/47 (46%)
Query: 51 YQCVTCGKSFRRSKDLKNHHNLHTGKRPYTCPWCSRTFANGSNCRSH 97
Y C CG ++ LK H HT RPY C +C+ +F N H
Sbjct: 2 YICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKH 48
Score = 31.2 bits (69), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 21/47 (44%)
Query: 23 YGCPHCPMKLNTRRTLRMHLVVHRDTKAYQCVTCGKSFRRSKDLKNH 69
Y C C ++ L+ H+ H D + Y C C SF+ +L H
Sbjct: 2 YICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKH 48
>pdb|2EQ4|A Chain A, Solution Structure Of The 11th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 224
Length = 46
Score = 33.9 bits (76), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 19/30 (63%)
Query: 49 KAYQCVTCGKSFRRSKDLKNHHNLHTGKRP 78
K Y C CGKSF R+ L H LH+G++P
Sbjct: 11 KLYNCKECGKSFSRAPCLLKHERLHSGEKP 40
>pdb|2EP3|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
631- 663) Of Human Zinc Finger Protein 484
Length = 46
Score = 33.9 bits (76), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 49 KAYQCVTCGKSFRRSKDLKNHHNLHTGKRP 78
K Y+C CGK+F +L H +HTG++P
Sbjct: 11 KPYRCAECGKAFTDRSNLFTHQKIHTGEKP 40
>pdb|2YTK|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
396- 428) Of Human Zinc Finger Protein 347
Length = 46
Score = 33.9 bits (76), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 20/30 (66%)
Query: 49 KAYQCVTCGKSFRRSKDLKNHHNLHTGKRP 78
K Y+C CGK F ++ L NH +HTG++P
Sbjct: 11 KPYKCNECGKVFTQNSHLTNHWRIHTGEKP 40
>pdb|2DLK|A Chain A, Solution Structure Of The First And The Second Zf-C2h2
Domains Of Zinc Finger Protein 692
Length = 79
Score = 33.9 bits (76), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 28/61 (45%), Gaps = 3/61 (4%)
Query: 26 PHCPMKLNTRRTLRMHL-VVHRDTKAYQCV--TCGKSFRRSKDLKNHHNLHTGKRPYTCP 82
P C + R+ L H H K++ C CGKSF K LK H LH+ R Y C
Sbjct: 13 PGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKLHSDTRDYICE 72
Query: 83 W 83
+
Sbjct: 73 F 73
Score = 28.5 bits (62), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 18/34 (52%)
Query: 26 PHCPMKLNTRRTLRMHLVVHRDTKAYQCVTCGKS 59
P C N ++ L+ H+ +H DT+ Y C G S
Sbjct: 44 PACGKSFNFKKHLKEHMKLHSDTRDYICEFSGPS 77
>pdb|2EOE|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
508- 540) Of Human Zinc Finger Protein 347
Length = 46
Score = 33.9 bits (76), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 49 KAYQCVTCGKSFRRSKDLKNHHNLHTGKRP 78
K Y+C CGK F ++ L NH +HTG +P
Sbjct: 11 KPYKCNECGKVFTQNSHLANHQRIHTGVKP 40
>pdb|2EP1|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
435- 467) Of Human Zinc Finger Protein 484
Length = 46
Score = 33.5 bits (75), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 18/30 (60%)
Query: 49 KAYQCVTCGKSFRRSKDLKNHHNLHTGKRP 78
K Y+C CGKSF + L H +HTG+ P
Sbjct: 11 KPYECSDCGKSFIKKSQLHVHQRIHTGENP 40
>pdb|2EME|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
725- 757) Of Human Zinc Finger Protein 473
Length = 46
Score = 33.5 bits (75), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 49 KAYQCVTCGKSFRRSKDLKNHHNLHTGKRP 78
K Y C CGK+F S +L H +HTG++P
Sbjct: 11 KPYVCDYCGKAFGLSAELVRHQRIHTGEKP 40
>pdb|2EM2|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
584- 616) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 33.5 bits (75), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 22/30 (73%)
Query: 49 KAYQCVTCGKSFRRSKDLKNHHNLHTGKRP 78
K ++C CGK+FR++ L +H +HTG++P
Sbjct: 11 KPFKCKECGKAFRQNIHLASHLRIHTGEKP 40
>pdb|1UN6|B Chain B, The Crystal Structure Of A Zinc Finger - Rna Complex
Reveals Two Modes Of Molecular Recognition
pdb|1UN6|C Chain C, The Crystal Structure Of A Zinc Finger - Rna Complex
Reveals Two Modes Of Molecular Recognition
pdb|1UN6|D Chain D, The Crystal Structure Of A Zinc Finger - Rna Complex
Reveals Two Modes Of Molecular Recognition
pdb|2HGH|A Chain A, Transcription Factor Iiia Zinc Fingers 4-6 Bound To 5s
Rrna 55mer (Nmr Structure)
Length = 87
Score = 33.1 bits (74), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
Query: 55 TCGKSFRRSKDLKNHHNLHTGKRPYTCP--WCSRTFANGSNCRSHKR 99
CGK+F++ LK H HT + PY CP C + F+ S + H++
Sbjct: 8 NCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEK 54
>pdb|2ENE|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (region
592- 624) Of Human Zinc Finger Protein 347
Length = 46
Score = 33.1 bits (74), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 49 KAYQCVTCGKSFRRSKDLKNHHNLHTGKRP 78
K Y+C CGK FR + L H +HTG++P
Sbjct: 11 KPYKCNECGKVFRHNSYLSRHQRIHTGEKP 40
>pdb|2J7J|A Chain A, Invariance Of The Zinc Finger Module: A Comparison Of
The Free Structure With Those In Nucleic-Acid Complexes
Length = 85
Score = 33.1 bits (74), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
Query: 55 TCGKSFRRSKDLKNHHNLHTGKRPYTCP--WCSRTFANGSNCRSHKR 99
CGK+F++ LK H HT + PY CP C + F+ S + H++
Sbjct: 8 NCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEK 54
>pdb|2EPU|A Chain A, Solution Structure Of The Secound C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 32
Length = 45
Score = 33.1 bits (74), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 19/29 (65%)
Query: 49 KAYQCVTCGKSFRRSKDLKNHHNLHTGKR 77
K ++C CGKSFR +L H +HTG++
Sbjct: 11 KPFECTHCGKSFRAKGNLVTHQRIHTGEK 39
>pdb|2YTH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
479- 511) Of Human Zinc Finger Protein 224
Length = 46
Score = 33.1 bits (74), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 20/30 (66%)
Query: 49 KAYQCVTCGKSFRRSKDLKNHHNLHTGKRP 78
K +QC CGK F ++ L +H +HTG++P
Sbjct: 11 KPFQCEECGKRFTQNSHLHSHQRVHTGEKP 40
>pdb|2EOR|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
255- 287) Of Human Zinc Finger Protein 224
Length = 46
Score = 33.1 bits (74), Expect = 0.077, Method: Composition-based stats.
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 49 KAYQCVTCGKSFRRSKDLKNHHNLHTGKRP 78
K Y C CGK+F L+ H +HTG++P
Sbjct: 11 KPYNCEECGKAFIHDSQLQEHQRIHTGEKP 40
>pdb|2EM9|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
367- 399) Of Human Zinc Finger Protein 224
Length = 46
Score = 32.7 bits (73), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 49 KAYQCVTCGKSFRRSKDLKNHHNLHTGKRP 78
K Y C CGKSFR + L H +H+G++P
Sbjct: 11 KPYNCKECGKSFRWASCLLKHQRVHSGEKP 40
>pdb|1TF3|A Chain A, Tfiiia Finger 1-3 Bound To Dna, Nmr, 22 Structures
Length = 92
Score = 32.7 bits (73), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 31/79 (39%), Gaps = 4/79 (5%)
Query: 28 CPMKLNTRRTLRMHLVVHRDTKAYQC--VTCGKSFRRSKDLKNHHNLHTGKRPYTC--PW 83
C N L+ HL H K + C C K F L H HTG++ +TC
Sbjct: 11 CGAAYNKNWKLQAHLSKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSDG 70
Query: 84 CSRTFANGSNCRSHKRRMH 102
C F +N + H R H
Sbjct: 71 CDLRFTTKANMKKHFNRFH 89
Score = 25.8 bits (55), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 25/46 (54%), Gaps = 4/46 (8%)
Query: 49 KAYQC--VTCGKSFRRSKDLKNHHNLHTGKRPYTC--PWCSRTFAN 90
K Y C CG ++ ++ L+ H + HTG++P+ C C + F +
Sbjct: 2 KRYICSFADCGAAYNKNWKLQAHLSKHTGEKPFPCKEEGCEKGFTS 47
>pdb|2EN4|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
284- 316) Of Human Zinc Finger Protein 347
Length = 46
Score = 32.7 bits (73), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 19/29 (65%)
Query: 49 KAYQCVTCGKSFRRSKDLKNHHNLHTGKR 77
K Y+C CGK+FR +L H +HTG++
Sbjct: 11 KPYKCYECGKAFRTRSNLTTHQVIHTGEK 39
Score = 26.9 bits (58), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 13/30 (43%)
Query: 20 ETPYGCPHCPMKLNTRRTLRMHLVVHRDTK 49
E PY C C TR L H V+H K
Sbjct: 10 EKPYKCYECGKAFRTRSNLTTHQVIHTGEK 39
>pdb|2EM5|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
768- 800) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 32.3 bits (72), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 48 TKAYQCVTCGKSFRRSKDLKNHHNLHTGKRP 78
TK++QC CG+ F L H +HTG++P
Sbjct: 10 TKSHQCHECGRGFTLKSHLNQHQRIHTGEKP 40
>pdb|2EMP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
536- 568) Of Human Zinc Finger Protein 347
Length = 46
Score = 32.3 bits (72), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 49 KAYQCVTCGKSFRRSKDLKNHHNLHTGKRP 78
K Y C CGK+F L H +HTG++P
Sbjct: 11 KPYMCNECGKAFSVYSSLTTHQVIHTGEKP 40
>pdb|2EPZ|A Chain A, Solution Structure Of The 4th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 28 Homolog
Length = 46
Score = 32.3 bits (72), Expect = 0.11, Method: Composition-based stats.
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 49 KAYQCVTCGKSFRRSKDLKNHHNLHTGKRP 78
K + C+ CGK+F L H +HTG++P
Sbjct: 11 KPFDCIDCGKAFSDHIGLNQHRRIHTGEKP 40
>pdb|2EP0|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
528- 560) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 32.3 bits (72), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 18/30 (60%)
Query: 49 KAYQCVTCGKSFRRSKDLKNHHNLHTGKRP 78
K Y+C C KSFR L H +HTG++P
Sbjct: 11 KPYKCDVCHKSFRYGSSLTVHQRIHTGEKP 40
>pdb|2EMH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
491- 523) Of Human Zinc Finger Protein 484
Length = 46
Score = 32.3 bits (72), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 51 YQCVTCGKSFRRSKDLKNHHNLHTGKRP 78
Y C CGK+F +L H +HTG++P
Sbjct: 13 YICTVCGKAFTDRSNLIKHQKIHTGEKP 40
>pdb|2YTI|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
564- 596) Of Human Zinc Finger Protein 347
Length = 46
Score = 32.3 bits (72), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 49 KAYQCVTCGKSFRRSKDLKNHHNLHTGKRP 78
K Y+C CGK F ++ L H +HTG++P
Sbjct: 11 KPYKCNECGKVFTQNSHLARHRGIHTGEKP 40
>pdb|2EM4|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
724- 756) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 32.3 bits (72), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 51 YQCVTCGKSFRRSKDLKNHHNLHTGKRP 78
Y+C+ CGK+F+ L H HTG++P
Sbjct: 13 YECIECGKAFKTKSSLICHRRSHTGEKP 40
>pdb|2EOG|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
693- 723) Of Human Zinc Finger Protein 268
Length = 44
Score = 32.3 bits (72), Expect = 0.13, Method: Composition-based stats.
Identities = 14/30 (46%), Positives = 17/30 (56%)
Query: 49 KAYQCVTCGKSFRRSKDLKNHHNLHTGKRP 78
K Y C CGK+FR L H HTG++P
Sbjct: 9 KPYGCSECGKAFRSKSYLIIHMRTHTGEKP 38
>pdb|2YTN|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
732- 764) Of Human Zinc Finger Protein 347
Length = 46
Score = 32.0 bits (71), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 49 KAYQCVTCGKSFRRSKDLKNHHNLHTGKRP 78
K Y+C CGK F ++ L H +HTG++P
Sbjct: 11 KPYKCNECGKVFTQNSHLARHRGIHTGEKP 40
>pdb|2EN1|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
563- 595) Of Human Zinc Finger Protein 224
Length = 46
Score = 32.0 bits (71), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 20/30 (66%)
Query: 49 KAYQCVTCGKSFRRSKDLKNHHNLHTGKRP 78
K ++C CGK F ++ L +H +HTG++P
Sbjct: 11 KPFKCEECGKRFTQNSQLHSHQRVHTGEKP 40
>pdb|2EOW|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
368- 400) Of Human Zinc Finger Protein 347
Length = 46
Score = 32.0 bits (71), Expect = 0.17, Method: Composition-based stats.
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 49 KAYQCVTCGKSFRRSKDLKNHHNLHTGKRP 78
K Y+C CGK+FR L H H+G++P
Sbjct: 11 KPYKCNECGKAFRARSSLAIHQATHSGEKP 40
>pdb|2YSP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
507- 539) Of Human Zinc Finger Protein 224
Length = 46
Score = 31.6 bits (70), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 49 KAYQCVTCGKSFRRSKDLKNHHNLHTGKRP 78
K Y+C CGK + +L H +HTG+RP
Sbjct: 11 KPYKCEKCGKGYNSKFNLDMHQKVHTGERP 40
>pdb|2ENF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
340- 372) Of Human Zinc Finger Protein 347
Length = 46
Score = 31.6 bits (70), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 49 KAYQCVTCGKSFRRSKDLKNHHNLHTGKRP 78
K Y+C CGK F ++ L H +HTG++P
Sbjct: 11 KPYKCNECGKVFTQNSHLVRHRGIHTGEKP 40
>pdb|2YTS|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
715- 747) Of Human Zinc Finger Protein 484
Length = 46
Score = 31.6 bits (70), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 18/30 (60%)
Query: 49 KAYQCVTCGKSFRRSKDLKNHHNLHTGKRP 78
K Y C CGKSF + L H +HTG++P
Sbjct: 11 KPYICNECGKSFIQKSHLNRHRRIHTGEKP 40
>pdb|2YTO|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (region
659- 691) Of Human Zinc Finger Protein 484
Length = 46
Score = 31.6 bits (70), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 17/29 (58%)
Query: 49 KAYQCVTCGKSFRRSKDLKNHHNLHTGKR 77
K Y+C CGK+F R L H HTG+R
Sbjct: 11 KPYKCSDCGKAFTRKSGLHIHQQSHTGER 39
>pdb|2YRH|A Chain A, Solution Structure Of The C2h2-Type Zinc Finger Domain
(699- 729) From Zinc Finger Protein 473
Length = 44
Score = 31.2 bits (69), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 18/26 (69%)
Query: 53 CVTCGKSFRRSKDLKNHHNLHTGKRP 78
C CGK+FR+S L H +H+G++P
Sbjct: 13 CNECGKTFRQSSCLSKHQRIHSGEKP 38
Score = 26.6 bits (57), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Query: 74 TGKRPYTCPWCSRTFANGSNCRSHKRRMHPEE 105
+GK+P C C +TF S+C S +R+H E
Sbjct: 6 SGKKPLVCNECGKTFRQ-SSCLSKHQRIHSGE 36
>pdb|2EN6|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
887- 919) Of Human Zinc Finger Protein 268
Length = 46
Score = 31.2 bits (69), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 49 KAYQCVTCGKSFRRSKDLKNHHNLHTGKRP 78
K Y C CGK+F + L H HTG++P
Sbjct: 11 KPYGCNECGKTFSQKSILSAHQRTHTGEKP 40
>pdb|2EOS|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
626- 654) Of Human B-Cell Lymphoma 6 Protein
Length = 42
Score = 31.2 bits (69), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 18/32 (56%)
Query: 49 KAYQCVTCGKSFRRSKDLKNHHNLHTGKRPYT 80
K Y C CG FR + LK+H +HTG P +
Sbjct: 10 KPYPCEICGTRFRHLQTLKSHLRIHTGSGPSS 41
>pdb|1XF7|A Chain A, High Resolution Nmr Structure Of The Wilms' Tumor
Suppressor Protein (Wt1) Finger 3
Length = 29
Score = 31.2 bits (69), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 18/29 (62%)
Query: 49 KAYQCVTCGKSFRRSKDLKNHHNLHTGKR 77
K +QC TC + F RS LK H HTG++
Sbjct: 1 KPFQCKTCQRKFSRSDHLKTHTRTHTGEK 29
>pdb|2EPS|A Chain A, Solution Structure Of The 4th Zinc Finger Domain Of Zinc
Finger Protein 278
Length = 54
Score = 31.2 bits (69), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Query: 49 KAYQCVTCGKSFRRSKDLKNH-HNLHTGKRPYTC 81
K Y C +CGK F R L H +HT +RP+ C
Sbjct: 11 KPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKC 44
>pdb|2EMY|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
551- 583) Of Human Zinc Finger Protein 268
Length = 46
Score = 31.2 bits (69), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 51 YQCVTCGKSFRRSKDLKNHHNLHTGKRP 78
Y+C CGK+F R L +H H G++P
Sbjct: 13 YECHECGKAFSRKYQLISHQRTHAGEKP 40
>pdb|2EM3|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
640- 672) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 30.8 bits (68), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 49 KAYQCVTCGKSFRRSKDLKNHHNLHTGKRP 78
K Y+C C K+F + L H HTG++P
Sbjct: 11 KPYECKVCSKAFTQKAHLAQHQKTHTGEKP 40
>pdb|2EMM|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
544- 576) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 30.8 bits (68), Expect = 0.35, Method: Composition-based stats.
Identities = 13/30 (43%), Positives = 20/30 (66%)
Query: 49 KAYQCVTCGKSFRRSKDLKNHHNLHTGKRP 78
+ ++C CGKSF +S L H +HTG++P
Sbjct: 11 RPHKCNECGKSFIQSAHLIQHQRIHTGEKP 40
>pdb|2YTT|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
204- 236) Of Human Zinc Finger Protein 473
Length = 46
Score = 30.8 bits (68), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 17/30 (56%)
Query: 49 KAYQCVTCGKSFRRSKDLKNHHNLHTGKRP 78
K YQC CGKSF S L H HT ++P
Sbjct: 11 KPYQCSECGKSFSGSYRLTQHWITHTREKP 40
>pdb|2EM1|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
637- 667) Of Human Zinc Finger Protein 268
Length = 44
Score = 30.8 bits (68), Expect = 0.38, Method: Composition-based stats.
Identities = 13/30 (43%), Positives = 16/30 (53%)
Query: 49 KAYQCVTCGKSFRRSKDLKNHHNLHTGKRP 78
K Y C CGK+F L H +HTG +P
Sbjct: 9 KPYSCNECGKAFTFKSQLIVHKGVHTGVKP 38
>pdb|2YTG|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
369- 401) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 30.4 bits (67), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 19/30 (63%)
Query: 49 KAYQCVTCGKSFRRSKDLKNHHNLHTGKRP 78
K ++C CGKS+ + L H +HTG++P
Sbjct: 11 KPFKCGECGKSYNQRVHLTQHQRVHTGEKP 40
>pdb|2YU8|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
648- 680) Of Human Zinc Finger Protein 347
Length = 46
Score = 30.4 bits (67), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 49 KAYQCVTCGKSFRRSKDLKNHHNLHTGKRP 78
K Y+C CGK F ++ L H +HTG +P
Sbjct: 11 KPYKCNECGKVFTQNSHLARHRRVHTGGKP 40
>pdb|2EL5|A Chain A, Solution Structure Of The 18th Zf-C2h2 Domain From Human
Zinc Finger Protein 268
Length = 42
Score = 30.4 bits (67), Expect = 0.42, Method: Composition-based stats.
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 51 YQCVTCGKSFRRSKDLKNHHNLHTGK 76
Y+C CGK+F R L +H H G+
Sbjct: 11 YECSECGKAFNRKDQLISHQRTHAGE 36
>pdb|2EMV|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
859- 889) Of Human Zinc Finger Protein 268
Length = 44
Score = 30.4 bits (67), Expect = 0.44, Method: Composition-based stats.
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 49 KAYQCVTCGKSFRRSKDLKNHHNLHTGK 76
K Y+C CGK+F R+ L H H+G+
Sbjct: 11 KPYECSECGKAFIRNSQLIVHQRTHSGE 38
>pdb|2EMI|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
547- 579) Of Human Zinc Finger Protein 484
Length = 46
Score = 30.4 bits (67), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 51 YQCVTCGKSFRRSKDLKNHHNLHTGKRP 78
Y+C CGK+F + L H +H G++P
Sbjct: 13 YECSECGKAFIQKSTLSMHQRIHRGEKP 40
>pdb|2EOP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
719- 751) Of Human Zinc Finger Protein 268
Length = 46
Score = 30.0 bits (66), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 49 KAYQCVTCGKSFRRSKDLKNHHNLHTGKRP 78
K ++C CGKSF + L H +HTG+ P
Sbjct: 11 KPHECRECGKSFSFNSQLIVHQRIHTGENP 40
>pdb|2EN9|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
415- 447) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 30.0 bits (66), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 19/30 (63%)
Query: 49 KAYQCVTCGKSFRRSKDLKNHHNLHTGKRP 78
K ++C C K+F +S L H +HTG++P
Sbjct: 11 KLFKCNECKKTFTQSSSLTVHQRIHTGEKP 40
>pdb|2LV2|A Chain A, Solution Nmr Structure Of C2h2-Type Zinc-Fingers 4 And 5
From Human Insulinoma-Associated Protein 1 (Fragment
424-497), Northeast Structural Genomics Consortium
Target Hr7614b
Length = 85
Score = 30.0 bits (66), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 16/64 (25%), Positives = 26/64 (40%)
Query: 42 LVVHRDTKAYQCVTCGKSFRRSKDLKNHHNLHTGKRPYTCPWCSRTFANGSNCRSHKRRM 101
L + + + C CG+SF + H L + + C +C TF + H +
Sbjct: 20 LGLSASAECHLCPVCGESFASKGAQERHLRLLHAAQVFPCKYCPATFYSSPGLTRHINKC 79
Query: 102 HPEE 105
HP E
Sbjct: 80 HPSE 83
>pdb|2EQW|A Chain A, Solution Structure Of The 6th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 484
Length = 42
Score = 30.0 bits (66), Expect = 0.53, Method: Composition-based stats.
Identities = 12/28 (42%), Positives = 15/28 (53%)
Query: 49 KAYQCVTCGKSFRRSKDLKNHHNLHTGK 76
K Y C CGK+F R H +HTG+
Sbjct: 9 KPYVCTECGKAFIRKSHFITHERIHTGE 36
>pdb|2EOV|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
519- 551) Of Human Zinc Finger Protein 484
Length = 46
Score = 30.0 bits (66), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 17/29 (58%)
Query: 49 KAYQCVTCGKSFRRSKDLKNHHNLHTGKR 77
K Y+C CGKSF L+ H HTG+R
Sbjct: 11 KPYKCSDCGKSFTWKSRLRIHQKCHTGER 39
>pdb|3ZVX|A Chain A, Structure Of The Lectin From Platypodium Elegans In
Complex With A Trimannoside
pdb|3ZVX|B Chain B, Structure Of The Lectin From Platypodium Elegans In
Complex With A Trimannoside
pdb|3ZYR|A Chain A, Structure Of The Lectin From Platypodium Elegans In
Complex With Heptasaccharide
pdb|3ZYR|B Chain B, Structure Of The Lectin From Platypodium Elegans In
Complex With Heptasaccharide
Length = 261
Score = 30.0 bits (66), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Query: 84 CSRTFANGSNCRSH-KRRMHPEELKLYESSLGIVHKEKKKFDVSLHPPPQPPED 136
+RT +NG+ RS R +H +++L+E S V + +F L P P D
Sbjct: 42 LTRTDSNGAPVRSTVGRILHSAQVRLWEKSTNRVANLQTQFSFFLSSPLSNPAD 95
>pdb|2YSV|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 17 In
Zinc Finger Protein 473
Length = 42
Score = 30.0 bits (66), Expect = 0.65, Method: Composition-based stats.
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 49 KAYQCVTCGKSFRRSKDLKNHHNLHTGK 76
K Y C CGK+F +S L H +HTG+
Sbjct: 9 KPYVCQECGKAFTQSSCLSIHRRVHTGE 36
Score = 29.3 bits (64), Expect = 1.0, Method: Composition-based stats.
Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Query: 74 TGKRPYTCPWCSRTFANGSNCRSHKRRMHPEE 105
+G++PY C C + F S+C S RR+H E
Sbjct: 6 SGEKPYVCQECGKAFTQ-SSCLSIHRRVHTGE 36
>pdb|7ZNF|A Chain A, Alternating Zinc Fingers In The Human Male Associated
Protein Zfy: 2d Nmr Structure Of An Even Finger And
Implications For "jumping-Linker" Dna Recognition
Length = 30
Score = 29.6 bits (65), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 10/29 (34%), Positives = 18/29 (62%)
Query: 77 RPYTCPWCSRTFANGSNCRSHKRRMHPEE 105
+ Y C +C + FA+ SN ++H + H +E
Sbjct: 1 KTYQCQYCEKRFADSSNLKTHIKTKHSKE 29
>pdb|2EOL|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
581- 609) Of Human Zinc Finger Protein 268
Length = 42
Score = 29.6 bits (65), Expect = 0.76, Method: Composition-based stats.
Identities = 12/28 (42%), Positives = 15/28 (53%)
Query: 49 KAYQCVTCGKSFRRSKDLKNHHNLHTGK 76
K Y+C CGK+F L H HTG+
Sbjct: 9 KPYECTDCGKAFGLKSQLIIHQRTHTGE 36
>pdb|2EMG|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
463- 495) Of Human Zinc Finger Protein 484
Length = 46
Score = 29.6 bits (65), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 51 YQCVTCGKSFRRSKDLKNHHNLHTGKRP 78
+ C CGK F +L H +HTG+RP
Sbjct: 13 FICSECGKVFTHKTNLIIHQKIHTGERP 40
>pdb|2EN2|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
598- 626) Of Human B-Cell Lymphoma 6 Protein
Length = 42
Score = 29.6 bits (65), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 18/32 (56%)
Query: 49 KAYQCVTCGKSFRRSKDLKNHHNLHTGKRPYT 80
K Y+C TCG F + L+ H +HTG P +
Sbjct: 10 KPYKCETCGARFVQVAHLRAHVLIHTGSGPSS 41
>pdb|2EOM|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
341- 373) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 29.3 bits (64), Expect = 0.87, Method: Composition-based stats.
Identities = 10/30 (33%), Positives = 19/30 (63%)
Query: 49 KAYQCVTCGKSFRRSKDLKNHHNLHTGKRP 78
+ ++C CGK F ++ + H +HTG++P
Sbjct: 11 RGHRCSDCGKFFLQASNFIQHRRIHTGEKP 40
>pdb|2YTB|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 5 In
Zinc Finger Protein 32
Length = 42
Score = 29.3 bits (64), Expect = 0.89, Method: Composition-based stats.
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 49 KAYQCVTCGKSFRRSKDLKNHHNLHTGKRP 78
K Y+C CGK+F + L H +HTG P
Sbjct: 10 KPYRCDQCGKAFSQKGSLIVHIRVHTGSGP 39
>pdb|2EPX|A Chain A, Solution Structure Of The Third C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 28 Homolog
Length = 47
Score = 29.3 bits (64), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Query: 49 KAYQCVTCGKSFRRSKDLKNHHN-LHTGKRP 78
K Y+C+ CGK+F ++ L H HTG++P
Sbjct: 11 KPYECIECGKAFIQNTSLIRHWRYYHTGEKP 41
>pdb|2YTJ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (region
771- 803) Of Human Zinc Finger Protein 484
Length = 46
Score = 29.3 bits (64), Expect = 1.00, Method: Composition-based stats.
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 49 KAYQCVTCGKSFRRSKDLKNHHNLHTGKRP 78
K Y C CGK+F +L H +HT ++P
Sbjct: 11 KPYICAECGKAFTIRSNLIKHQKIHTKQKP 40
>pdb|2EOK|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
441- 469) Of Human Zinc Finger Protein 268
Length = 42
Score = 29.3 bits (64), Expect = 1.00, Method: Composition-based stats.
Identities = 12/27 (44%), Positives = 14/27 (51%)
Query: 49 KAYQCVTCGKSFRRSKDLKNHHNLHTG 75
K Y C CGK+F L H +HTG
Sbjct: 9 KPYVCSDCGKAFTFKSQLIVHQGIHTG 35
>pdb|2EOJ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
355- 385) Of Human Zinc Finger Protein 268
Length = 44
Score = 28.9 bits (63), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 51 YQCVTCGKSFRRSKDLKNHHNLHTGK 76
Y+C CGK F R L +H H+G+
Sbjct: 13 YECCECGKVFSRKDQLVSHQKTHSGQ 38
>pdb|2EOU|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
370- 400) Of Human Zinc Finger Protein 473
Length = 44
Score = 28.9 bits (63), Expect = 1.3, Method: Composition-based stats.
Identities = 12/25 (48%), Positives = 14/25 (56%)
Query: 52 QCVTCGKSFRRSKDLKNHHNLHTGK 76
+C CGK FR S L H LH G+
Sbjct: 14 ECQECGKIFRHSSLLIEHQALHAGE 38
>pdb|2ENH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
556- 588) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 28.9 bits (63), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 17/30 (56%)
Query: 49 KAYQCVTCGKSFRRSKDLKNHHNLHTGKRP 78
K Y+C C K+F L H +H+G++P
Sbjct: 11 KPYECDVCRKAFSHHASLTQHQRVHSGEKP 40
>pdb|2EMC|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
641- 673) Of Human Zinc Finger Protein 473
Length = 46
Score = 28.5 bits (62), Expect = 1.6, Method: Composition-based stats.
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 51 YQCVTCGKSFRRSKDLKNHHNLHTGKRP 78
++C CGK+F S L H +H G+ P
Sbjct: 13 FKCNECGKTFSHSAHLSKHQLIHAGENP 40
>pdb|2EMW|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
301- 331) Of Human Zinc Finger Protein 268
Length = 44
Score = 28.5 bits (62), Expect = 1.6, Method: Composition-based stats.
Identities = 12/29 (41%), Positives = 15/29 (51%)
Query: 49 KAYQCVTCGKSFRRSKDLKNHHNLHTGKR 77
K Y C CGK F L H +HTG++
Sbjct: 9 KPYGCNECGKDFSSKSYLIVHQRIHTGEK 37
Score = 27.7 bits (60), Expect = 3.0, Method: Composition-based stats.
Identities = 11/33 (33%), Positives = 17/33 (51%)
Query: 17 THGETPYGCPHCPMKLNTRRTLRMHLVVHRDTK 49
+ GE PYGC C +++ L +H +H K
Sbjct: 5 SSGEKPYGCNECGKDFSSKSYLIVHQRIHTGEK 37
>pdb|2EM0|A Chain A, Solution Structure Of The 18th Zf-C2h2 Domain From Human
Zinc Finger Protein 224
Length = 46
Score = 28.5 bits (62), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 10/30 (33%), Positives = 18/30 (60%)
Query: 49 KAYQCVTCGKSFRRSKDLKNHHNLHTGKRP 78
K ++C C F ++ L+ H N+H G++P
Sbjct: 11 KTWKCRECDMCFSQASSLRLHQNVHVGEKP 40
>pdb|2LVT|A Chain A, Solution Structure Of Miz-1 Zinc Finger 9
Length = 29
Score = 28.5 bits (62), Expect = 1.7, Method: Composition-based stats.
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 49 KAYQCVTCGKSFRRSKDLKNHHNLHTGKR 77
K QCV CGK+F ++ L H HTG++
Sbjct: 1 KPCQCVMCGKAFTQASSLIAHVRQHTGEK 29
>pdb|2EPR|A Chain A, Solution Structure Of The Secound Zinc Finger Domain Of
Zinc Finger Protein 278
Length = 48
Score = 28.5 bits (62), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 18/35 (51%)
Query: 46 RDTKAYQCVTCGKSFRRSKDLKNHHNLHTGKRPYT 80
R K C CGK FR L H H+G++PY+
Sbjct: 8 RTRKQVACEICGKIFRDVYHLNRHKLSHSGEKPYS 42
>pdb|2ELZ|A Chain A, Solution Structure Of The 17th Zf-C2h2 Domain From Human
Zinc Finger Protein 224
Length = 46
Score = 28.1 bits (61), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 49 KAYQCVTCGKSFRRSKDLKNHHNLHTGKR 77
K Y+C CGK + R +L H +H G++
Sbjct: 11 KPYKCEDCGKGYNRRLNLDMHQRVHMGEK 39
Score = 26.2 bits (56), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 13/31 (41%)
Query: 20 ETPYGCPHCPMKLNTRRTLRMHLVVHRDTKA 50
E PY C C N R L MH VH K
Sbjct: 10 EKPYKCEDCGKGYNRRLNLDMHQRVHMGEKT 40
>pdb|2EN0|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
385- 413) Of Human Zinc Finger Protein 268
Length = 42
Score = 28.1 bits (61), Expect = 2.2, Method: Composition-based stats.
Identities = 12/28 (42%), Positives = 15/28 (53%)
Query: 49 KAYQCVTCGKSFRRSKDLKNHHNLHTGK 76
K Y C CGK+F L H +HTG+
Sbjct: 9 KPYVCNECGKAFGLKSQLIIHERIHTGE 36
>pdb|2YTF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
607- 639) Of Human Zinc Finger Protein 268
Length = 46
Score = 28.1 bits (61), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 17/30 (56%)
Query: 49 KAYQCVTCGKSFRRSKDLKNHHNLHTGKRP 78
K ++C C K+F +L H HTG++P
Sbjct: 11 KPFECSECQKAFNTKSNLIVHQRTHTGEKP 40
>pdb|2EPY|A Chain A, Solution Structure Of The 10th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 268
Length = 42
Score = 27.7 bits (60), Expect = 2.6, Method: Composition-based stats.
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 49 KAYQCVTCGKSFRRSKDLKNHHNLHTGK 76
K ++C CGK+F L H +HTG+
Sbjct: 9 KLHECNNCGKAFSFKSQLIIHQRIHTGE 36
>pdb|1P7A|A Chain A, Solution Stucture Of The Third Zinc Finger From Bklf
Length = 37
Score = 27.7 bits (60), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 10/27 (37%), Positives = 17/27 (62%)
Query: 74 TGKRPYTCPWCSRTFANGSNCRSHKRR 100
TG +P+ CP C R+F+ + H++R
Sbjct: 7 TGIKPFQCPDCDRSFSRSDHLALHRKR 33
>pdb|1SRK|A Chain A, Solution Structure Of The Third Zinc Finger Domain Of
Fog-1
Length = 35
Score = 27.7 bits (60), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Query: 74 TGKRPYTCPWCSRTFANGSNCRSHKRRMHPEEL 106
+GKRP+ C C F +NC H ++H + L
Sbjct: 3 SGKRPFVCRICLSAFTTKANCARH-LKVHTDTL 34
>pdb|2D9H|A Chain A, Solution Structure Of The Forth And Fifth Zf-C2h2 Domains
Of Zinc Finger Protein 692
Length = 78
Score = 27.7 bits (60), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 17/71 (23%), Positives = 28/71 (39%), Gaps = 3/71 (4%)
Query: 47 DTKAYQCVTCGKSFRRSKDLKNHHNLHT---GKRPYTCPWCSRTFANGSNCRSHKRRMHP 103
+ QC CG + R+ L H H + C +C + F + +H+ + HP
Sbjct: 4 GSSGLQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSHP 63
Query: 104 EELKLYESSLG 114
L + S G
Sbjct: 64 ALLLAPQESSG 74
>pdb|2YTQ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
775- 807) Of Human Zinc Finger Protein 268
Length = 46
Score = 27.7 bits (60), Expect = 3.2, Method: Composition-based stats.
Identities = 12/30 (40%), Positives = 16/30 (53%)
Query: 49 KAYQCVTCGKSFRRSKDLKNHHNLHTGKRP 78
K Y C CGK+F L H H+G++P
Sbjct: 11 KPYGCSECGKAFSSKSYLIIHMRTHSGEKP 40
>pdb|2CT1|A Chain A, Solution Structure Of The Zinc Finger Domain Of
Transcriptional Repressor Ctcf Protein
Length = 77
Score = 27.3 bits (59), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 2/53 (3%)
Query: 19 GETPYGCPHCPMKLNTRRTLRMHLVV-HRDTKA-YQCVTCGKSFRRSKDLKNH 69
GE PY C C + T++MH++ H + A + C C R DL H
Sbjct: 12 GEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVH 64
Score = 27.3 bits (59), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 26/63 (41%), Gaps = 6/63 (9%)
Query: 44 VHRDTKAYQCVTCGKSFRRSKDLKNH----HNLHTGKRPYTCPWCSRTFANGSNCRSHKR 99
H K Y+C C F +S +K H H + K + CP C A S+ H R
Sbjct: 9 THSGEKPYECYICHARFTQSGTMKMHILQKHTENVAK--FHCPHCDTVIARKSDLGVHLR 66
Query: 100 RMH 102
+ H
Sbjct: 67 KQH 69
>pdb|2KVF|A Chain A, Structure Of The Three-Cys2his2 Domain Of Mouse Testis
Zinc Finger Protein
Length = 28
Score = 27.3 bits (59), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 10/25 (40%), Positives = 14/25 (56%)
Query: 51 YQCVTCGKSFRRSKDLKNHHNLHTG 75
Y C CGK F ++ H+ +HTG
Sbjct: 4 YSCSVCGKRFSLKHQMETHYRVHTG 28
>pdb|1SP2|A Chain A, Nmr Structure Of A Zinc Finger Domain From Transcription
Factor Sp1f2, Minimized Average Structure
pdb|1VA2|A Chain A, Solution Structure Of Transcription Factor Sp1 Dna
Binding Domain (Zinc Finger 2)
Length = 31
Score = 27.3 bits (59), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 15/22 (68%)
Query: 56 CGKSFRRSKDLKNHHNLHTGKR 77
CGK F RS +L+ H HTG++
Sbjct: 10 CGKRFTRSDELQRHKRTHTGEK 31
>pdb|2LVH|A Chain A, Solution Structure Of The Zinc Finger Afv1p06 Protein
From The Hyperthermophilic Archaeal Virus Afv1
Length = 59
Score = 27.3 bits (59), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 12/41 (29%), Positives = 20/41 (48%)
Query: 49 KAYQCVTCGKSFRRSKDLKNHHNLHTGKRPYTCPWCSRTFA 89
+ YQC+ CG +FR K L H P + + ++F+
Sbjct: 9 RVYQCLRCGLTFRTKKQLIRHLVNTEKVNPLSIDYYYQSFS 49
>pdb|2EOQ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
283- 315) Of Human Zinc Finger Protein 224
Length = 46
Score = 26.9 bits (58), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 49 KAYQCVTCGKSFRRSKDLKNHHNLHTGKRP 78
K ++C CGKSF L H +HT ++P
Sbjct: 11 KPFKCDICGKSFCGRSRLNRHSMVHTAEKP 40
>pdb|2M0F|A Chain A, Solution Structure Of Miz-1 Zinc Finger 7
Length = 29
Score = 26.9 bits (58), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 17/26 (65%)
Query: 52 QCVTCGKSFRRSKDLKNHHNLHTGKR 77
+C CGK F S +LK H +H+G++
Sbjct: 4 KCRECGKQFTTSGNLKRHLRIHSGEK 29
>pdb|2ENC|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
395- 427) Of Human Zinc Finger Protein 224
Length = 46
Score = 26.6 bits (57), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 10/30 (33%), Positives = 17/30 (56%)
Query: 49 KAYQCVTCGKSFRRSKDLKNHHNLHTGKRP 78
K ++C CGK F + +H H+G++P
Sbjct: 11 KPFKCEECGKGFYTNSQCYSHQRSHSGEKP 40
>pdb|2EN7|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
495- 525) Of Human Zinc Finger Protein 268
Length = 44
Score = 26.6 bits (57), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 15/28 (53%)
Query: 49 KAYQCVTCGKSFRRSKDLKNHHNLHTGK 76
K Y C CGK+FR L H HTG+
Sbjct: 11 KPYVCNECGKAFRSKSYLIIHTRTHTGE 38
>pdb|2EOZ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
809- 841) Of Human Zinc Finger Protein 473
Length = 46
Score = 26.6 bits (57), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 14/26 (53%)
Query: 49 KAYQCVTCGKSFRRSKDLKNHHNLHT 74
K Y C CGK+F S L H +HT
Sbjct: 11 KPYSCNVCGKAFVLSAHLNQHLRVHT 36
>pdb|2EL4|A Chain A, Solution Structure Of The 15th Zf-C2h2 Domain From Human
Zinc Finger Protein 268
Length = 46
Score = 26.6 bits (57), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 14/31 (45%)
Query: 48 TKAYQCVTCGKSFRRSKDLKNHHNLHTGKRP 78
K Y C C K+F L H HTG +P
Sbjct: 10 VKPYGCSQCAKTFSLKSQLIVHQRSHTGVKP 40
>pdb|2EOH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
780- 812) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 26.2 bits (56), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 49 KAYQCVTCGKSFRRSKDLKNHHNLHTGKR 77
K Y+C C K+F + L H +HTG+R
Sbjct: 11 KPYECKECRKTFIQIGHLNQHKRVHTGER 39
>pdb|2ELX|A Chain A, Solution Structure Of The 8th C2h2 Zinc Finger Of Mouse
Zinc Finger Protein 406
Length = 35
Score = 26.2 bits (56), Expect = 8.1, Method: Composition-based stats.
Identities = 10/29 (34%), Positives = 14/29 (48%)
Query: 74 TGKRPYTCPWCSRTFANGSNCRSHKRRMH 102
+G Y C C + F + RSH R +H
Sbjct: 3 SGSSGYVCALCLKKFVSSIRLRSHIREVH 31
>pdb|1X6F|A Chain A, Solution Structures Of The C2h2 Type Zinc Finger Domain
Of Human Zinc Finger Protein 462
Length = 88
Score = 26.2 bits (56), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 10/27 (37%), Positives = 14/27 (51%)
Query: 21 TPYGCPHCPMKLNTRRTLRMHLVVHRD 47
+ Y C HC KL + L HL +H +
Sbjct: 24 STYQCKHCDSKLQSTAELTSHLNIHNE 50
>pdb|1X5W|A Chain A, Solution Structure Of The C2h2 Type Zinc-Binding Domain Of
Human Zinc Finger Protein 64, Isoforms 1 And 2
Length = 70
Score = 26.2 bits (56), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 12/39 (30%), Positives = 19/39 (48%)
Query: 66 LKNHHNLHTGKRPYTCPWCSRTFANGSNCRSHKRRMHPE 104
L+ H +H RP+ C +CS SN H ++ H +
Sbjct: 25 LRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKKFHGD 63
>pdb|2WBT|A Chain A, The Structure Of A Double C2h2 Zinc Finger Protein From A
Hyperthermophilic Archaeal Virus In The Absence Of Dna
pdb|2WBT|B Chain B, The Structure Of A Double C2h2 Zinc Finger Protein From A
Hyperthermophilic Archaeal Virus In The Absence Of Dna
Length = 129
Score = 26.2 bits (56), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 27/61 (44%), Gaps = 5/61 (8%)
Query: 9 YRLKLHLDTHGETPYGCPHCPMKLNTRRTLRMHLVVHRDTKAYQCVTCGKSFRRSKDLKN 68
YRL L + + + CP C M ++ +L+ H+ TK C C K F + +
Sbjct: 64 YRL---LASKAISQFVCPLCLMPFSSSVSLKQHIRYTEHTKV--CPVCKKEFTSTDSALD 118
Query: 69 H 69
H
Sbjct: 119 H 119
>pdb|2L1O|A Chain A, Zinc To Cadmium Replacement In The A. Thaliana Superman
Cys2his2 Zinc Finger Induces Structural Rearrangements
Of Typical Dna Base Determinant Positions
pdb|1NJQ|A Chain A, Nmr Structure Of The Single Qalggh Zinc Finger Domain
From Arabidopsis Thaliana Superman Protein
Length = 39
Score = 25.8 bits (55), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 9/25 (36%), Positives = 15/25 (60%)
Query: 49 KAYQCVTCGKSFRRSKDLKNHHNLH 73
++Y C C + FR ++ L H N+H
Sbjct: 5 RSYTCSFCKREFRSAQALGGHMNVH 29
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.138 0.465
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,320,481
Number of Sequences: 62578
Number of extensions: 209934
Number of successful extensions: 1146
Number of sequences better than 100.0: 193
Number of HSP's better than 100.0 without gapping: 181
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 629
Number of HSP's gapped (non-prelim): 472
length of query: 159
length of database: 14,973,337
effective HSP length: 91
effective length of query: 68
effective length of database: 9,278,739
effective search space: 630954252
effective search space used: 630954252
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 47 (22.7 bits)