RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy16923
(159 letters)
>1ubd_C Protein (YY1 zinc finger domain); transcription initiation,
initiator element, zinc finger protein, DNA- protein
recognition; HET: DNA; 2.50A {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*
Length = 124
Score = 80.3 bits (199), Expect = 2e-20
Identities = 35/99 (35%), Positives = 50/99 (50%), Gaps = 4/99 (4%)
Query: 5 FKTKYRLKLHLDTHGETPYGCPHCPMKLNTRRTLRMHLVVHRDTKAYQCVT--CGKSFRR 62
F+ ++ HL THG + C C L+ H +VH K +QC CGK F
Sbjct: 17 FRDNSAMRKHLHTHGPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSL 76
Query: 63 SKDLKNHHNLHTGKRPYTCPW--CSRTFANGSNCRSHKR 99
+L+ H +HTG RPY CP+ C++ FA +N +SH
Sbjct: 77 DFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHIL 115
Score = 65.2 bits (160), Expect = 1e-14
Identities = 28/84 (33%), Positives = 40/84 (47%), Gaps = 5/84 (5%)
Query: 20 ETPYGCPH--CPMKLNTRRTLRMHLVVHRDTKAYQCVTCGKSFRRSKDLKNHHNLHTGKR 77
CPH C +R HL H + + C CGK+F S LK H +HTG++
Sbjct: 3 PRTIACPHKGCTKMFRDNSAMRKHLHTHGP-RVHVCAECGKAFVESSKLKRHQLVHTGEK 61
Query: 78 PYTCPW--CSRTFANGSNCRSHKR 99
P+ C + C + F+ N R+H R
Sbjct: 62 PFQCTFEGCGKRFSLDFNLRTHVR 85
Score = 51.0 bits (123), Expect = 3e-09
Identities = 24/80 (30%), Positives = 35/80 (43%), Gaps = 5/80 (6%)
Query: 5 FKTKYRLKLHLDTH-GETPYGCPH--CPMKLNTRRTLRMHLVVHRDTKAYQCVT--CGKS 59
F +LK H H GE P+ C C + + LR H+ +H + Y C C K
Sbjct: 44 FVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKK 103
Query: 60 FRRSKDLKNHHNLHTGKRPY 79
F +S +LK+H H +
Sbjct: 104 FAQSTNLKSHILTHAKAKNN 123
>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Mus musculus} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Length = 124
Score = 80.2 bits (199), Expect = 2e-20
Identities = 35/102 (34%), Positives = 53/102 (51%), Gaps = 4/102 (3%)
Query: 5 FKTKYRLKLHLDTH-GETPYGCPHCPMKLNTRRTLRMH---LVVHRDTKAYQCVTCGKSF 60
F +KY LK+H H GE P+ CP C + L H ++R + + C C ++F
Sbjct: 17 FLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQVFTCSVCQETF 76
Query: 61 RRSKDLKNHHNLHTGKRPYTCPWCSRTFANGSNCRSHKRRMH 102
RR +L+ H HTG+ PY C CS+ F + +SH ++H
Sbjct: 77 RRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLH 118
Score = 67.1 bits (165), Expect = 2e-15
Identities = 23/84 (27%), Positives = 38/84 (45%), Gaps = 3/84 (3%)
Query: 19 GETPYGCPHCPMKLNTRRTLRMHLVVHRDTKAYQCVTCGKSFRRSKDLKNHH---NLHTG 75
G + CP C K ++ L++H H K ++C CGK + R ++L H ++
Sbjct: 4 GSSGVECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRS 63
Query: 76 KRPYTCPWCSRTFANGSNCRSHKR 99
++ +TC C TF R H
Sbjct: 64 EQVFTCSVCQETFRRRMELRLHMV 87
Score = 59.8 bits (146), Expect = 1e-12
Identities = 18/52 (34%), Positives = 26/52 (50%)
Query: 49 KAYQCVTCGKSFRRSKDLKNHHNLHTGKRPYTCPWCSRTFANGSNCRSHKRR 100
+C TC K F LK H+ HTG++P+ CP C + + N H+ R
Sbjct: 6 SGVECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEAR 57
Score = 33.2 bits (77), Expect = 0.011
Identities = 7/27 (25%), Positives = 11/27 (40%)
Query: 73 HTGKRPYTCPWCSRTFANGSNCRSHKR 99
+G CP C + F + + H R
Sbjct: 2 SSGSSGVECPTCHKKFLSKYYLKVHNR 28
>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex;
1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*
Length = 190
Score = 75.9 bits (188), Expect = 4e-18
Identities = 35/96 (36%), Positives = 45/96 (46%), Gaps = 1/96 (1%)
Query: 5 FKTKYRLKLHLDTH-GETPYGCPHCPMKLNTRRTLRMHLVVHRDTKAYQCVTCGKSFRRS 63
GE PY CP C + L H H K Y+C CGKSF
Sbjct: 3 EFGSSSSVAQAALEPGEKPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDK 62
Query: 64 KDLKNHHNLHTGKRPYTCPWCSRTFANGSNCRSHKR 99
KDL H HTG++PY CP C ++F+ +N R+H+R
Sbjct: 63 KDLTRHQRTHTGEKPYKCPECGKSFSQRANLRAHQR 98
Score = 75.6 bits (187), Expect = 6e-18
Identities = 41/107 (38%), Positives = 58/107 (54%), Gaps = 3/107 (2%)
Query: 5 FKTKYRLKLHLDTH-GETPYGCPHCPMKLNTRRTLRMHLVVHRDTKAYQCVTCGKSFRRS 63
F L H TH GE PY CP C + ++ L H H K Y+C CGKSF +
Sbjct: 31 FSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQRTHTGEKPYKCPECGKSFSQR 90
Query: 64 KDLKNHHNLHTGKRPYTCPWCSRTFANGSNCRSHKRRMHPEELKLYE 110
+L+ H HTG++PY CP C ++F+ ++ R+H+ R H E K Y+
Sbjct: 91 ANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQ-RTHTGE-KPYK 135
Score = 75.2 bits (186), Expect = 7e-18
Identities = 40/96 (41%), Positives = 50/96 (52%), Gaps = 1/96 (1%)
Query: 5 FKTKYRLKLHLDTH-GETPYGCPHCPMKLNTRRTLRMHLVVHRDTKAYQCVTCGKSFRRS 63
F K L H TH GE PY CP C + R LR H H K Y C CGKSF +
Sbjct: 59 FSDKKDLTRHQRTHTGEKPYKCPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQL 118
Query: 64 KDLKNHHNLHTGKRPYTCPWCSRTFANGSNCRSHKR 99
L+ H HTG++PY CP C ++F+ N +H+R
Sbjct: 119 AHLRAHQRTHTGEKPYKCPECGKSFSREDNLHTHQR 154
Score = 72.9 bits (180), Expect = 5e-17
Identities = 38/96 (39%), Positives = 49/96 (51%), Gaps = 1/96 (1%)
Query: 5 FKTKYRLKLHLDTH-GETPYGCPHCPMKLNTRRTLRMHLVVHRDTKAYQCVTCGKSFRRS 63
F + L+ H TH GE PY CP C + LR H H K Y+C CGKSF R
Sbjct: 87 FSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQRTHTGEKPYKCPECGKSFSRE 146
Query: 64 KDLKNHHNLHTGKRPYTCPWCSRTFANGSNCRSHKR 99
+L H HTG++PY CP C ++F+ H+R
Sbjct: 147 DNLHTHQRTHTGEKPYKCPECGKSFSRRDALNVHQR 182
Score = 54.8 bits (133), Expect = 3e-10
Identities = 30/75 (40%), Positives = 34/75 (45%), Gaps = 1/75 (1%)
Query: 5 FKTKYRLKLHLDTH-GETPYGCPHCPMKLNTRRTLRMHLVVHRDTKAYQCVTCGKSFRRS 63
F L+ H TH GE PY CP C + L H H K Y+C CGKSF R
Sbjct: 115 FSQLAHLRAHQRTHTGEKPYKCPECGKSFSREDNLHTHQRTHTGEKPYKCPECGKSFSRR 174
Query: 64 KDLKNHHNLHTGKRP 78
L H HTGK+
Sbjct: 175 DALNVHQRTHTGKKT 189
Score = 45.1 bits (108), Expect = 1e-06
Identities = 12/41 (29%), Positives = 19/41 (46%)
Query: 59 SFRRSKDLKNHHNLHTGKRPYTCPWCSRTFANGSNCRSHKR 99
S S L G++PY CP C ++F+ + H+R
Sbjct: 2 SEFGSSSSVAQAALEPGEKPYACPECGKSFSRSDHLAEHQR 42
>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA
complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Length = 155
Score = 74.6 bits (184), Expect = 7e-18
Identities = 31/111 (27%), Positives = 51/111 (45%), Gaps = 13/111 (11%)
Query: 5 FKTKYRLKLHLDTH----GETPYGCPHCPMKLNTRR-----TLRMHLVVHRDTKAYQCVT 55
F ++ +L H+++ + C R L +H+ H K ++C
Sbjct: 13 FDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRRHTGEKPHKCTF 72
Query: 56 --CGKSFRRSKDLKNHHNLHTGKRPYTC--PWCSRTFANGSNCRSHKRRMH 102
C KS+ R ++LK H HTG++PY C CS+ F+N S+ H+ R H
Sbjct: 73 EGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTH 123
Score = 68.0 bits (167), Expect = 2e-15
Identities = 33/103 (32%), Positives = 50/103 (48%), Gaps = 8/103 (7%)
Query: 5 FKTKYRLKLHLDTH-GETPYGCPH--CPMKLNTRRTLRMHLVVHRDTKAYQC--VTCGKS 59
FK +Y L +H+ H GE P+ C C + L+ HL H K Y C C K+
Sbjct: 49 FKAQYMLVVHMRRHTGEKPHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKA 108
Query: 60 FRRSKDLKNHHN-LHTGKRPYTC--PWCSRTFANGSNCRSHKR 99
F + D H N H+ ++PY C P C++ + + S+ R H +
Sbjct: 109 FSNASDRAKHQNRTHSNEKPYVCKLPGCTKRYTDPSSLRKHVK 151
Score = 53.0 bits (128), Expect = 1e-09
Identities = 12/60 (20%), Positives = 21/60 (35%), Gaps = 8/60 (13%)
Query: 49 KAYQCVTCGKSFRRSKDLKNH---HNLHTGKRPYTCPWC-----SRTFANGSNCRSHKRR 100
+ C + F + L +H ++H ++ + C W R F H RR
Sbjct: 2 TDCRWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRR 61
Score = 45.3 bits (108), Expect = 7e-07
Identities = 22/77 (28%), Positives = 28/77 (36%), Gaps = 6/77 (7%)
Query: 5 FKTKYRLKLHLDTH-GETPYGCPH--CPMKLNTRRTLRMHLV-VHRDTKAYQCVT--CGK 58
+ LK HL +H GE PY C H C + H H + K Y C C K
Sbjct: 79 YSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTHSNEKPYVCKLPGCTK 138
Query: 59 SFRRSKDLKNHHNLHTG 75
+ L+ H G
Sbjct: 139 RYTDPSSLRKHVKTVHG 155
Score = 26.8 bits (60), Expect = 2.4
Identities = 5/26 (19%), Positives = 7/26 (26%)
Query: 77 RPYTCPWCSRTFANGSNCRSHKRRMH 102
CS+ F + H H
Sbjct: 2 TDCRWDGCSQEFDSQEQLVHHINSEH 27
>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain,
structural genomics, NPPSFA; NMR {Mus musculus} SCOP:
k.12.1.1
Length = 106
Score = 72.5 bits (179), Expect = 1e-17
Identities = 23/101 (22%), Positives = 38/101 (37%), Gaps = 3/101 (2%)
Query: 11 LKLHLDTH-GETPYGCPHCPMKLNTRRTLRMHLVVHRDTKAYQCVTCGKSFRRSKDLKNH 69
+ + C C L +H H D + Y C C K+FRR L++H
Sbjct: 5 SSGGRLPSKTKKEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDH 64
Query: 70 HNLHTGKRPYTCPWCSRTFANGSNCRSHKRRMHPEELKLYE 110
+H+ ++P+ C C + F HK +H +
Sbjct: 65 RYIHSKEKPFKCQECGKGFCQSRTLAVHK-TLHMQT-SSPT 103
Score = 60.5 bits (148), Expect = 5e-13
Identities = 27/78 (34%), Positives = 34/78 (43%), Gaps = 1/78 (1%)
Query: 5 FKTKYRLKLHLDTH-GETPYGCPHCPMKLNTRRTLRMHLVVHRDTKAYQCVTCGKSFRRS 63
F Y L +H TH E PY C C + LR H +H K ++C CGK F +S
Sbjct: 27 FTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQECGKGFCQS 86
Query: 64 KDLKNHHNLHTGKRPYTC 81
+ L H LH T
Sbjct: 87 RTLAVHKTLHMQTSSPTA 104
Score = 60.5 bits (148), Expect = 5e-13
Identities = 19/63 (30%), Positives = 29/63 (46%)
Query: 37 TLRMHLVVHRDTKAYQCVTCGKSFRRSKDLKNHHNLHTGKRPYTCPWCSRTFANGSNCRS 96
+ + K + C CG+ F +S +L H HT +RPYTC C + F + R
Sbjct: 4 GSSGGRLPSKTKKEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRD 63
Query: 97 HKR 99
H+
Sbjct: 64 HRY 66
Score = 38.2 bits (90), Expect = 1e-04
Identities = 9/37 (24%), Positives = 13/37 (35%)
Query: 63 SKDLKNHHNLHTGKRPYTCPWCSRTFANGSNCRSHKR 99
S K+ + C +C R F N H+R
Sbjct: 2 SSGSSGGRLPSKTKKEFICKFCGRHFTKSYNLLIHER 38
>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET:
DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*
Length = 119
Score = 72.6 bits (179), Expect = 2e-17
Identities = 34/101 (33%), Positives = 47/101 (46%), Gaps = 5/101 (4%)
Query: 4 RFKTKYRLKLHLDTH-GETPYGC--PHCPMKLNTRRTLRMHLVVHRDTKAYQCVTCGKSF 60
R+ L++H H GE PY C C + + L+ H H K +QC TC + F
Sbjct: 17 RYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQCKTCQRKF 76
Query: 61 RRSKDLKNHHNLHTGKRPYTCPW--CSRTFANGSNCRSHKR 99
RS LK H HTG++P++C W C + FA H
Sbjct: 77 SRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRHHN 117
Score = 63.3 bits (155), Expect = 7e-14
Identities = 29/85 (34%), Positives = 40/85 (47%), Gaps = 4/85 (4%)
Query: 19 GETPYGC--PHCPMKLNTRRTLRMHLVVHRDTKAYQCVT--CGKSFRRSKDLKNHHNLHT 74
+ P+ C P C + L+MH H K YQC C + F RS LK H HT
Sbjct: 3 EKRPFMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHT 62
Query: 75 GKRPYTCPWCSRTFANGSNCRSHKR 99
G +P+ C C R F+ + ++H R
Sbjct: 63 GVKPFQCKTCQRKFSRSDHLKTHTR 87
Score = 29.8 bits (68), Expect = 0.17
Identities = 9/28 (32%), Positives = 16/28 (57%), Gaps = 2/28 (7%)
Query: 74 TGKRPYTC--PWCSRTFANGSNCRSHKR 99
+ KRP+ C P C++ + S+ + H R
Sbjct: 2 SEKRPFMCAYPGCNKRYFKLSHLQMHSR 29
>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear
protein, DNA- binding, transcription, C2H2-type zinc
finger, structural genomics, NPPSFA; NMR {Homo sapiens}
SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Length = 96
Score = 71.7 bits (177), Expect = 2e-17
Identities = 23/84 (27%), Positives = 35/84 (41%), Gaps = 1/84 (1%)
Query: 17 TH-GETPYGCPHCPMKLNTRRTLRMHLVVHRDTKAYQCVTCGKSFRRSKDLKNHHNLHTG 75
+ P+ C C + + L+ H+ H K Y+C TC + S L H +H+
Sbjct: 2 SSGSSGPHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSD 61
Query: 76 KRPYTCPWCSRTFANGSNCRSHKR 99
+RP+ C C N S H R
Sbjct: 62 ERPFKCQICPYASRNSSQLTVHLR 85
Score = 62.8 bits (154), Expect = 6e-14
Identities = 25/78 (32%), Positives = 34/78 (43%), Gaps = 1/78 (1%)
Query: 5 FKTKYRLKLHLDTH-GETPYGCPHCPMKLNTRRTLRMHLVVHRDTKAYQCVTCGKSFRRS 63
F K +LK H+ H G PY C C +L HL +H D + ++C C + R S
Sbjct: 18 FSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQICPYASRNS 77
Query: 64 KDLKNHHNLHTGKRPYTC 81
L H HTG +
Sbjct: 78 SQLTVHLRSHTGDSGPSS 95
>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1
g.37.1.1 g.37.1.1
Length = 95
Score = 69.8 bits (172), Expect = 1e-16
Identities = 23/86 (26%), Positives = 34/86 (39%), Gaps = 2/86 (2%)
Query: 19 GETPYGCPHCPMKLNTRRTLRMHLVVHRDTKAYQCVTCGKSFRRSKDLKNHHNLHTG--K 76
G + C C L H + H K Y C CG F+R + H H G
Sbjct: 4 GSSGVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVG 63
Query: 77 RPYTCPWCSRTFANGSNCRSHKRRMH 102
+PY C C + F+ + H +++H
Sbjct: 64 KPYICQSCGKGFSRPDHLNGHIKQVH 89
Score = 58.7 bits (143), Expect = 2e-12
Identities = 21/63 (33%), Positives = 25/63 (39%), Gaps = 2/63 (3%)
Query: 49 KAYQCVTCGKSFRRSKDLKNHHNLHTGKRPYTCPWCSRTFANGSNCRSHKRRMHP-EELK 107
C CGK FR L H H+G++PY+CP C F H R H K
Sbjct: 6 SGVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHV-RSHDGSVGK 64
Query: 108 LYE 110
Y
Sbjct: 65 PYI 67
Score = 33.2 bits (77), Expect = 0.006
Identities = 6/27 (22%), Positives = 10/27 (37%)
Query: 73 HTGKRPYTCPWCSRTFANGSNCRSHKR 99
+G C C + F + + HK
Sbjct: 2 SSGSSGVACEICGKIFRDVYHLNRHKL 28
>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the
cerebellum 3, disease mutation, DNA-binding,
metal-binding, nucleus, polymorphism; NMR {Homo sapiens}
Length = 155
Score = 70.4 bits (173), Expect = 3e-16
Identities = 34/109 (31%), Positives = 47/109 (43%), Gaps = 14/109 (12%)
Query: 5 FKTKYRLKLHLDTH-GETPY---------GCPHCPMKLNTRRTLRMHLVVHRDTKAYQC- 53
F T + L H+ P CP + L H+ VH K + C
Sbjct: 35 FSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTGEKPFPCP 94
Query: 54 -VTCGKSFRRSKDLKNHHNLHTGKRPYTCPW--CSRTFANGSNCRSHKR 99
CGK F RS++LK H HTG++P+ C + C R FAN S+ + H
Sbjct: 95 FPGCGKIFARSENLKIHKRTHTGEKPFKCEFEGCDRRFANSSDRKKHMH 143
Score = 64.2 bits (157), Expect = 6e-14
Identities = 28/110 (25%), Positives = 42/110 (38%), Gaps = 15/110 (13%)
Query: 5 FKTKYRLKLHLDTH----GETPYGCPHCPMKLNTRRTLRMHLVVHRDTKAYQ-------- 52
+ +K L + C +T L H+ + Q
Sbjct: 4 GSSGQPIKQELSCKWIDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWE 63
Query: 53 -CVTCGKSFRRSKDLKNHHNLHTGKRPYTCPW--CSRTFANGSNCRSHKR 99
C GKSF+ L NH +HTG++P+ CP+ C + FA N + HKR
Sbjct: 64 ECPREGKSFKAKYKLVNHIRVHTGEKPFPCPFPGCGKIFARSENLKIHKR 113
Score = 58.8 bits (143), Expect = 6e-12
Identities = 26/82 (31%), Positives = 37/82 (45%), Gaps = 5/82 (6%)
Query: 5 FKTKYRLKLHLDTH-GETPYGCPH--CPMKLNTRRTLRMHLVVHRDTKAYQCVT--CGKS 59
FK KY+L H+ H GE P+ CP C L++H H K ++C C +
Sbjct: 72 FKAKYKLVNHIRVHTGEKPFPCPFPGCGKIFARSENLKIHKRTHTGEKPFKCEFEGCDRR 131
Query: 60 FRRSKDLKNHHNLHTGKRPYTC 81
F S D K H ++HT +
Sbjct: 132 FANSSDRKKHMHVHTSDKSGPS 153
Score = 53.1 bits (128), Expect = 9e-10
Identities = 10/82 (12%), Positives = 21/82 (25%), Gaps = 9/82 (10%)
Query: 28 CPMKLNTRRTLRMHLVVHRDTKAYQCVTCGKSFRRSKDLKNHHNLHTGKRPYT------- 80
+ + + +C ++F +L H + P
Sbjct: 3 SGSSGQPIKQELSCKWIDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYW 62
Query: 81 --CPWCSRTFANGSNCRSHKRR 100
CP ++F +H R
Sbjct: 63 EECPREGKSFKAKYKLVNHIRV 84
Score = 42.3 bits (100), Expect = 1e-05
Identities = 9/49 (18%), Positives = 15/49 (30%)
Query: 56 CGKSFRRSKDLKNHHNLHTGKRPYTCPWCSRTFANGSNCRSHKRRMHPE 104
G S + K + + + C RTF+ +H H
Sbjct: 3 SGSSGQPIKQELSCKWIDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVG 51
>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding
protein, transcription/DNA complex; HET: DNA; 1.60A
{Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB:
1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A*
1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C
Length = 90
Score = 67.9 bits (167), Expect = 5e-16
Identities = 28/82 (34%), Positives = 41/82 (50%), Gaps = 2/82 (2%)
Query: 20 ETPYGCP--HCPMKLNTRRTLRMHLVVHRDTKAYQCVTCGKSFRRSKDLKNHHNLHTGKR 77
E PY CP C + + +L H+ +H K +QC C ++F RS L H HTG++
Sbjct: 2 ERPYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 78 PYTCPWCSRTFANGSNCRSHKR 99
P+ C C R FA + H +
Sbjct: 62 PFACDICGRKFARSDERKRHTK 83
Score = 54.0 bits (131), Expect = 1e-10
Identities = 22/73 (30%), Positives = 31/73 (42%), Gaps = 1/73 (1%)
Query: 4 RFKTKYRLKLHLDTH-GETPYGCPHCPMKLNTRRTLRMHLVVHRDTKAYQCVTCGKSFRR 62
RF L H+ H G+ P+ C C + L H+ H K + C CG+ F R
Sbjct: 15 RFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFAR 74
Query: 63 SKDLKNHHNLHTG 75
S + K H +H
Sbjct: 75 SDERKRHTKIHLR 87
>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: g.37.1.1 g.37.1.1
Length = 86
Score = 66.8 bits (164), Expect = 1e-15
Identities = 21/83 (25%), Positives = 29/83 (34%), Gaps = 5/83 (6%)
Query: 11 LKLHLDTH-GETPYGCPHCPMKLNTRRTLRMHLVVH----RDTKAYQCVTCGKSFRRSKD 65
TH GE PY C HC ++ L MH + A+ C CGK+F R
Sbjct: 3 SGSSGRTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNT 62
Query: 66 LKNHHNLHTGKRPYTCPWCSRTF 88
+ H + G +
Sbjct: 63 MARHADNCAGPDGVEGENSGPSS 85
Score = 55.2 bits (134), Expect = 4e-11
Identities = 15/67 (22%), Positives = 23/67 (34%), Gaps = 4/67 (5%)
Query: 37 TLRMHLVVHRDTKAYQCVTCGKSFRRSKDLKNHHNLHTG----KRPYTCPWCSRTFANGS 92
+ H K Y C C K+FR+ + L H + + C C +TF +
Sbjct: 2 SSGSSGRTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRN 61
Query: 93 NCRSHKR 99
H
Sbjct: 62 TMARHAD 68
>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain,
protein-DNA complex, DNA-B metal-binding, nucleus; HET:
DNA; NMR {Rattus norvegicus}
Length = 82
Score = 65.9 bits (162), Expect = 2e-15
Identities = 29/77 (37%), Positives = 42/77 (54%)
Query: 23 YGCPHCPMKLNTRRTLRMHLVVHRDTKAYQCVTCGKSFRRSKDLKNHHNLHTGKRPYTCP 82
+ C C TL HL++H DT+ Y C CGK F + D+K H +HTG++P+ C
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQ 61
Query: 83 WCSRTFANGSNCRSHKR 99
C + F+ SN +H R
Sbjct: 62 VCGKAFSQSSNLITHSR 78
Score = 57.0 bits (139), Expect = 5e-12
Identities = 19/50 (38%), Positives = 28/50 (56%)
Query: 50 AYQCVTCGKSFRRSKDLKNHHNLHTGKRPYTCPWCSRTFANGSNCRSHKR 99
++ C CGKSF+RS L H +H+ RPY C +C + F S+ + H
Sbjct: 1 SFDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTF 50
Score = 50.1 bits (121), Expect = 3e-09
Identities = 24/72 (33%), Positives = 36/72 (50%), Gaps = 1/72 (1%)
Query: 5 FKTKYRLKLHLDTH-GETPYGCPHCPMKLNTRRTLRMHLVVHRDTKAYQCVTCGKSFRRS 63
FK L HL H PY C +C + + + ++ H +H K ++C CGK+F +S
Sbjct: 11 FKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQVCGKAFSQS 70
Query: 64 KDLKNHHNLHTG 75
+L H HTG
Sbjct: 71 SNLITHSRKHTG 82
>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc
finger, structural genomics, NPPSFA; NMR {Homo sapiens}
SCOP: g.37.1.1 g.37.1.1
Length = 77
Score = 64.5 bits (158), Expect = 9e-15
Identities = 19/74 (25%), Positives = 28/74 (37%), Gaps = 4/74 (5%)
Query: 11 LKLHLDTH-GETPYGCPHCPMKLNTRRTLRMHLVVH--RDTKAYQCVTCGKSFRRSKDLK 67
TH GE PY C C + T++MH++ + + C C R DL
Sbjct: 3 SGSSGRTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLG 62
Query: 68 NHH-NLHTGKRPYT 80
H H+ P +
Sbjct: 63 VHLRKQHSYSGPSS 76
Score = 63.3 bits (155), Expect = 2e-14
Identities = 17/68 (25%), Positives = 24/68 (35%), Gaps = 2/68 (2%)
Query: 37 TLRMHLVVHRDTKAYQCVTCGKSFRRSKDLKNHHNLHTG--KRPYTCPWCSRTFANGSNC 94
+ H K Y+C C F +S +K H + CP C A S+
Sbjct: 2 SSGSSGRTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDL 61
Query: 95 RSHKRRMH 102
H R+ H
Sbjct: 62 GVHLRKQH 69
Score = 42.1 bits (100), Expect = 3e-06
Identities = 10/45 (22%), Positives = 18/45 (40%)
Query: 66 LKNHHNLHTGKRPYTCPWCSRTFANGSNCRSHKRRMHPEELKLYE 110
+ H+G++PY C C F + H + H E + +
Sbjct: 3 SGSSGRTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFH 47
>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB
domain containing protein 22B, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Length = 110
Score = 64.8 bits (159), Expect = 1e-14
Identities = 24/93 (25%), Positives = 35/93 (37%), Gaps = 3/93 (3%)
Query: 5 FKTKYRLKLHLDTH-GETPYGCPHCPMKLNTRRTLRMHLVVHRDTKAYQCVTCGKSFRRS 63
F K + H+ H G PYGC C K + L H+ +H K Y+C C K F
Sbjct: 19 FTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNICAKRFMWR 78
Query: 64 KDLKNHHNLHTGKRPYTCPWCSRTFANGSNCRS 96
H ++ + + Y + S S
Sbjct: 79 DSF--HRHVTSCTKSYEAAKAEQNTTEASGPSS 109
Score = 61.7 bits (151), Expect = 2e-13
Identities = 22/78 (28%), Positives = 33/78 (42%), Gaps = 2/78 (2%)
Query: 17 TH-GETPYGCPHCPMKLNTRRTLRMHLVVHRDTKAYQCVTCGKSFRRSKDLKNHHNLHTG 75
G+ Y C C + H+ +H + Y C CGK F+ L H +HTG
Sbjct: 4 GSSGDKLYPC-QCGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTG 62
Query: 76 KRPYTCPWCSRTFANGSN 93
+PY C C++ F +
Sbjct: 63 IKPYECNICAKRFMWRDS 80
Score = 29.3 bits (67), Expect = 0.21
Identities = 7/30 (23%), Positives = 13/30 (43%), Gaps = 1/30 (3%)
Query: 70 HNLHTGKRPYTCPWCSRTFANGSNCRSHKR 99
+ +G + Y C C ++F + S H
Sbjct: 2 SSGSSGDKLYPCQ-CGKSFTHKSQRDRHMS 30
>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces
cerevisiae} SCOP: g.37.1.1 g.37.1.1
Length = 60
Score = 62.9 bits (154), Expect = 2e-14
Identities = 17/54 (31%), Positives = 30/54 (55%)
Query: 49 KAYQCVTCGKSFRRSKDLKNHHNLHTGKRPYTCPWCSRTFANGSNCRSHKRRMH 102
+++ C C ++F R + LK H+ HT ++PY C C+R F H +++H
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIH 54
Score = 25.5 bits (57), Expect = 2.1
Identities = 15/67 (22%), Positives = 20/67 (29%), Gaps = 30/67 (44%)
Query: 11 LKLHLDTH-GETPYGCPHCPMKLNTRRTLRMHLVVHRDTKAYQCVTCGKSFRRSKDLKNH 69
LK H +H E PY C C ++F R L H
Sbjct: 18 LKRHYRSHTNEKPYPCGL----------------------------CNRAFTRRDLLIRH 49
Query: 70 HN-LHTG 75
+H+G
Sbjct: 50 AQKIHSG 56
>1tf6_A Protein (transcription factor IIIA); complex (transcription
regulation/DNA), RNA polymerase III, transcription
initiation, zinc finger protein; HET: DNA; 3.10A
{Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A
Length = 190
Score = 66.1 bits (162), Expect = 3e-14
Identities = 27/104 (25%), Positives = 37/104 (35%), Gaps = 7/104 (6%)
Query: 14 HLDTH-GETPYGC--PHCPMKLNTRRTLRMHLVVHRDTKAYQC--VTCGKSFRRSKDLKN 68
Y C C N L+ HL H K + C C K F L
Sbjct: 3 EKALPVVYKRYICSFADCGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTR 62
Query: 69 HHNLHTGKRPYTC--PWCSRTFANGSNCRSHKRRMHPEELKLYE 110
H HTG++ +TC C F +N + H R H ++ +Y
Sbjct: 63 HSLTHTGEKNFTCDSDGCDLRFTTKANMKKHFNRFHNIKICVYV 106
Score = 58.8 bits (143), Expect = 1e-11
Identities = 25/107 (23%), Positives = 34/107 (31%), Gaps = 7/107 (6%)
Query: 5 FKTKYRLKLHLDTH-GE--TPYGC--PHCPMKLNTRRTLRMHLVVHRDTKAYQC--VTCG 57
F TK +K H + Y C +C L++H H Y+C C
Sbjct: 84 FTTKANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCD 143
Query: 58 KSFRRSKDLKNHHNLHTGKRPYTCPWCSRTFANGSNCRSHKRRMHPE 104
K F LK H +H G CS + H H +
Sbjct: 144 KRFSLPSRLKRHEKVHAGYPCKKDDSCSFVGKTWTLYLKHVAECHQD 190
Score = 34.9 bits (81), Expect = 0.005
Identities = 5/34 (14%), Positives = 9/34 (26%), Gaps = 2/34 (5%)
Query: 68 NHHNLHTGKRPYTC--PWCSRTFANGSNCRSHKR 99
L + Y C C + ++H
Sbjct: 2 GEKALPVVYKRYICSFADCGAAYNKNWKLQAHLC 35
>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding,
transcription, metal-binding, DNA, protein, nucleus,
activator; 1.70A {Mus musculus} PDB: 2wbu_A
Length = 89
Score = 62.9 bits (154), Expect = 4e-14
Identities = 26/84 (30%), Positives = 33/84 (39%), Gaps = 2/84 (2%)
Query: 19 GETPYGCPHCPMKLNTRRTLRMHLVVHRDTKAYQC--VTCGKSFRRSKDLKNHHNLHTGK 76
C L+ HL H K Y C CG F RS +L H+ HTG
Sbjct: 4 ATHTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGH 63
Query: 77 RPYTCPWCSRTFANGSNCRSHKRR 100
RP+ C C R F+ + H +R
Sbjct: 64 RPFQCQKCDRAFSRSDHLALHMKR 87
Score = 53.7 bits (130), Expect = 1e-10
Identities = 20/57 (35%), Positives = 25/57 (43%), Gaps = 2/57 (3%)
Query: 45 HRDTKAYQCVTCGKSFRRSKDLKNHHNLHTGKRPYTCPW--CSRTFANGSNCRSHKR 99
T CGK++ +S LK H HTG++PY C W C FA H R
Sbjct: 2 RTATHTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYR 58
Score = 40.6 bits (96), Expect = 1e-05
Identities = 25/66 (37%), Positives = 29/66 (43%), Gaps = 3/66 (4%)
Query: 11 LKLHLDTH-GETPYGC--PHCPMKLNTRRTLRMHLVVHRDTKAYQCVTCGKSFRRSKDLK 67
LK HL TH GE PY C C K L H H + +QC C ++F RS L
Sbjct: 23 LKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCDRAFSRSDHLA 82
Query: 68 NHHNLH 73
H H
Sbjct: 83 LHMKRH 88
Score = 32.1 bits (74), Expect = 0.015
Identities = 6/28 (21%), Positives = 11/28 (39%)
Query: 73 HTGKRPYTCPWCSRTFANGSNCRSHKRR 100
T C +T+ S+ ++H R
Sbjct: 2 RTATHTCDYAGCGKTYTKSSHLKAHLRT 29
>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 78
Score = 61.7 bits (150), Expect = 1e-13
Identities = 17/69 (24%), Positives = 27/69 (39%), Gaps = 3/69 (4%)
Query: 49 KAYQCVTCGKSFRRSKDLKNHHNLHT---GKRPYTCPWCSRTFANGSNCRSHKRRMHPEE 105
QC CG + R+ L H H + C +C + F + +H+ + HP
Sbjct: 6 SGLQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSHPAL 65
Query: 106 LKLYESSLG 114
L + S G
Sbjct: 66 LLAPQESSG 74
Score = 36.2 bits (84), Expect = 4e-04
Identities = 10/62 (16%), Positives = 16/62 (25%), Gaps = 5/62 (8%)
Query: 4 RFKTKYRLKLHLDTH----GETPYGCPHCPMKLNTRRTLRMHL-VVHRDTKAYQCVTCGK 58
+ K L H H + C C + ++ H H + G
Sbjct: 16 TCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSHPALLLAPQESSGP 75
Query: 59 SF 60
S
Sbjct: 76 SS 77
Score = 31.6 bits (72), Expect = 0.023
Identities = 6/27 (22%), Positives = 10/27 (37%)
Query: 73 HTGKRPYTCPWCSRTFANGSNCRSHKR 99
+G C C T ++ H+R
Sbjct: 2 SSGSSGLQCEICGFTCRQKASLNWHQR 28
>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine
zipper, X-RAY crystallography, structure-based design,
zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1
g.37.1.1 PDB: 1xf7_A
Length = 88
Score = 61.4 bits (150), Expect = 1e-13
Identities = 17/80 (21%), Positives = 29/80 (36%), Gaps = 1/80 (1%)
Query: 22 PYGCPHCPMKLNTRRTLRMHLVVHRDTKAYQCVTCGKSFRRSKDLKNHHNLHTGKRPYTC 81
P+ C C + L H+ H K + C CG+ F RS + K H ++ P
Sbjct: 3 PFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQHIL-PILE 61
Query: 82 PWCSRTFANGSNCRSHKRRM 101
+ + + R+
Sbjct: 62 DKVEELLSKNYHLENEVARL 81
Score = 60.2 bits (147), Expect = 5e-13
Identities = 19/51 (37%), Positives = 27/51 (52%)
Query: 49 KAYQCVTCGKSFRRSKDLKNHHNLHTGKRPYTCPWCSRTFANGSNCRSHKR 99
K +QC C ++F RS L H HTG++P+ C C R FA + H+
Sbjct: 2 KPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRD 52
Score = 30.5 bits (70), Expect = 0.066
Identities = 7/68 (10%), Positives = 11/68 (16%), Gaps = 31/68 (45%)
Query: 11 LKLHLDTHGETPYGCPHCPMKLNTRRTLRMHLVVHRDTKAYQCVTCGKSFRRSKDLKNHH 70
K H D P + ++ L+N
Sbjct: 47 RKRHRDIQHILPI----------------------------LEDKVEELLSKNYHLENEV 78
Query: 71 NL---HTG 75
G
Sbjct: 79 ARLKKLVG 86
>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN
domain containing protein 16, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Length = 77
Score = 60.5 bits (148), Expect = 2e-13
Identities = 23/63 (36%), Positives = 31/63 (49%)
Query: 37 TLRMHLVVHRDTKAYQCVTCGKSFRRSKDLKNHHNLHTGKRPYTCPWCSRTFANGSNCRS 96
+ R+ + Y+C CGKSF S DL H HTG++PY C C + F S+
Sbjct: 5 SSGRSEWQQRERRRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIG 64
Query: 97 HKR 99
H R
Sbjct: 65 HHR 67
Score = 53.6 bits (130), Expect = 1e-10
Identities = 20/70 (28%), Positives = 25/70 (35%), Gaps = 1/70 (1%)
Query: 11 LKLHLDTH-GETPYGCPHCPMKLNTRRTLRMHLVVHRDTKAYQCVTCGKSFRRSKDLKNH 69
Y C C + L H H K Y+C CGK+F + L H
Sbjct: 6 SGRSEWQQRERRRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGH 65
Query: 70 HNLHTGKRPY 79
H +HTG P
Sbjct: 66 HRVHTGSGPS 75
Score = 39.3 bits (93), Expect = 3e-05
Identities = 9/37 (24%), Positives = 16/37 (43%)
Query: 63 SKDLKNHHNLHTGKRPYTCPWCSRTFANGSNCRSHKR 99
S +R Y C C ++F++ S+ H+R
Sbjct: 3 SGSSGRSEWQQRERRRYKCDECGKSFSHSSDLSKHRR 39
>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast
structural genomics consortiu PSI-biology, protein
structure initiative; NMR {Homo sapiens}
Length = 74
Score = 60.5 bits (148), Expect = 3e-13
Identities = 21/62 (33%), Positives = 31/62 (50%)
Query: 38 LRMHLVVHRDTKAYQCVTCGKSFRRSKDLKNHHNLHTGKRPYTCPWCSRTFANGSNCRSH 97
H + K Y+C C SFR +L +H +HTG++PY C C F +N ++H
Sbjct: 5 HHHHSHMTHSDKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTH 64
Query: 98 KR 99
R
Sbjct: 65 TR 66
Score = 56.7 bits (138), Expect = 7e-12
Identities = 24/71 (33%), Positives = 32/71 (45%), Gaps = 5/71 (7%)
Query: 14 HLDTH-----GETPYGCPHCPMKLNTRRTLRMHLVVHRDTKAYQCVTCGKSFRRSKDLKN 68
H H + PY C C + L H VH K Y+C CG F R +LK
Sbjct: 4 HHHHHSHMTHSDKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKT 63
Query: 69 HHNLHTGKRPY 79
H +H+G++PY
Sbjct: 64 HTRIHSGEKPY 74
Score = 39.4 bits (93), Expect = 3e-05
Identities = 10/37 (27%), Positives = 15/37 (40%)
Query: 63 SKDLKNHHNLHTGKRPYTCPWCSRTFANGSNCRSHKR 99
+H ++ +PY C C +F N SHK
Sbjct: 2 GHHHHHHSHMTHSDKPYKCDRCQASFRYKGNLASHKT 38
>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692,
structural genomics, NPPSFA, national project on
protein structural and functional analyses; NMR {Homo
sapiens} SCOP: g.37.1.1 g.37.1.1
Length = 79
Score = 59.9 bits (146), Expect = 4e-13
Identities = 23/75 (30%), Positives = 31/75 (41%), Gaps = 5/75 (6%)
Query: 19 GETPYGCPH--CPMKLNTRRTLRMHL-VVHRDTKAYQC--VTCGKSFRRSKDLKNHHNLH 73
G + C C + R+ L H H K++ C CGKSF K LK H LH
Sbjct: 4 GSSGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKLH 63
Query: 74 TGKRPYTCPWCSRTF 88
+ R Y C + +
Sbjct: 64 SDTRDYICEFSGPSS 78
Score = 52.6 bits (127), Expect = 4e-10
Identities = 12/56 (21%), Positives = 24/56 (42%), Gaps = 5/56 (8%)
Query: 49 KAYQCVT--CGKSFRRSKDLKNHH-NLHTGKRPYTCP--WCSRTFANGSNCRSHKR 99
C CG+ F + L +H H ++ ++CP C ++F + + H +
Sbjct: 6 SGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMK 61
Score = 37.5 bits (88), Expect = 2e-04
Identities = 9/32 (28%), Positives = 13/32 (40%), Gaps = 2/32 (6%)
Query: 73 HTGKRPYTCPW--CSRTFANGSNCRSHKRRMH 102
+G C + C R F+N HK+ H
Sbjct: 2 SSGSSGMPCDFPGCGRIFSNRQYLNHHKKYQH 33
>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: g.37.1.1 g.37.1.1
Length = 72
Score = 59.8 bits (146), Expect = 5e-13
Identities = 24/62 (38%), Positives = 33/62 (53%)
Query: 38 LRMHLVVHRDTKAYQCVTCGKSFRRSKDLKNHHNLHTGKRPYTCPWCSRTFANGSNCRSH 97
+H K Y CV CGK+F RS L H +HTG++PY C C + F+ S +H
Sbjct: 2 SSGSSGIHSGEKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINH 61
Query: 98 KR 99
+R
Sbjct: 62 QR 63
Score = 55.9 bits (136), Expect = 1e-11
Identities = 24/70 (34%), Positives = 31/70 (44%), Gaps = 1/70 (1%)
Query: 11 LKLHLDTH-GETPYGCPHCPMKLNTRRTLRMHLVVHRDTKAYQCVTCGKSFRRSKDLKNH 69
H GE PYGC C + L H VH K Y+C+ CGK+F ++ L NH
Sbjct: 2 SSGSSGIHSGEKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINH 61
Query: 70 HNLHTGKRPY 79
+HT
Sbjct: 62 QRIHTSGPSS 71
>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double
helix, transcription/DNA complex; HET: DNA; 2.80A
{Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1
Length = 66
Score = 59.1 bits (144), Expect = 8e-13
Identities = 12/61 (19%), Positives = 24/61 (39%), Gaps = 2/61 (3%)
Query: 45 HRDTKAYQCVTCGKSFRRSKDLKNHH--NLHTGKRPYTCPWCSRTFANGSNCRSHKRRMH 102
Y+C C + + + H+ + + Y CP+C + F N +H + +H
Sbjct: 5 KEGEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKIIH 64
Query: 103 P 103
Sbjct: 65 K 65
Score = 45.2 bits (108), Expect = 2e-07
Identities = 16/62 (25%), Positives = 20/62 (32%), Gaps = 3/62 (4%)
Query: 17 TH-GETPYGCPHCPMKLNTRRTLRMHL--VVHRDTKAYQCVTCGKSFRRSKDLKNHHNLH 73
T GE Y C C H R+ K Y C C K F R ++ H +
Sbjct: 4 TKEGEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKII 63
Query: 74 TG 75
Sbjct: 64 HK 65
Score = 40.2 bits (95), Expect = 1e-05
Identities = 12/38 (31%), Positives = 17/38 (44%)
Query: 73 HTGKRPYTCPWCSRTFANGSNCRSHKRRMHPEELKLYE 110
G+ Y C CSR + + SN H H +K+Y
Sbjct: 5 KEGEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYP 42
>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND,
transcription factor, kruppel-like factor, GC-box
promoter elements, structural genomics; NMR {Homo
sapiens}
Length = 100
Score = 59.2 bits (144), Expect = 1e-12
Identities = 27/89 (30%), Positives = 39/89 (43%), Gaps = 4/89 (4%)
Query: 16 DTHGETPYGC--PHCPMKLNTRRTLRMHLVVHRDTKAYQCV--TCGKSFRRSKDLKNHHN 71
D + C P C L+ HL H K Y+C C F RS +L H+
Sbjct: 9 DLEKRRIHYCDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYR 68
Query: 72 LHTGKRPYTCPWCSRTFANGSNCRSHKRR 100
HTG +P+ C C+R+F+ + H +R
Sbjct: 69 KHTGAKPFQCGVCNRSFSRSDHLALHMKR 97
Score = 43.4 bits (103), Expect = 1e-06
Identities = 26/67 (38%), Positives = 29/67 (43%), Gaps = 3/67 (4%)
Query: 11 LKLHLDTH-GETPYGC--PHCPMKLNTRRTLRMHLVVHRDTKAYQCVTCGKSFRRSKDLK 67
LK HL TH GE PY C C + L H H K +QC C +SF RS L
Sbjct: 33 LKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCGVCNRSFSRSDHLA 92
Query: 68 NHHNLHT 74
H H
Sbjct: 93 LHMKRHQ 99
Score = 28.4 bits (64), Expect = 0.46
Identities = 8/43 (18%), Positives = 17/43 (39%), Gaps = 8/43 (18%)
Query: 59 SFRRSKDLKNHHNLHTGKRPYTCPW--CSRTFANGSNCRSHKR 99
S S +R + C + C++ + S+ ++H R
Sbjct: 2 SSGSSGPDLEK------RRIHYCDYPGCTKVYTKSSHLKAHLR 38
>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA
binding, transcription, C2H2 type zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 70
Score = 56.4 bits (137), Expect = 9e-12
Identities = 14/56 (25%), Positives = 20/56 (35%)
Query: 44 VHRDTKAYQCVTCGKSFRRSKDLKNHHNLHTGKRPYTCPWCSRTFANGSNCRSHKR 99
+C C S L+ H +H RP+ C +CS SN H +
Sbjct: 3 SGSSGHPEKCSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMK 58
Score = 48.3 bits (116), Expect = 1e-08
Identities = 12/67 (17%), Positives = 24/67 (35%), Gaps = 1/67 (1%)
Query: 17 TH-GETPYGCPHCPMKLNTRRTLRMHLVVHRDTKAYQCVTCGKSFRRSKDLKNHHNLHTG 75
+ P C C +++ LR+H +H + ++C C ++ +L H G
Sbjct: 3 SGSSGHPEKCSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKKFHG 62
Query: 76 KRPYTCP 82
Sbjct: 63 DMSGPSS 69
>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 54
Score = 54.9 bits (133), Expect = 3e-11
Identities = 16/49 (32%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
Query: 44 VHRDTKAYQCVTCGKSFRRSKDLKNH-HNLHTGKRPYTCPWCSRTFANG 91
K Y C +CGK F R L H +HT +RP+ C ++G
Sbjct: 6 SGSVGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGPSSG 54
Score = 36.4 bits (85), Expect = 2e-04
Identities = 7/35 (20%), Positives = 17/35 (48%)
Query: 68 NHHNLHTGKRPYTCPWCSRTFANGSNCRSHKRRMH 102
+ + + +PY C C + F+ + H +++H
Sbjct: 2 SSGSSGSVGKPYICQSCGKGFSRPDHLNGHIKQVH 36
>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc
finger, dimer, protein-DNA complex, cooperativity,
transcription/DNA complex; 2.35A {Mus musculus} SCOP:
g.37.1.1 g.37.1.1
Length = 73
Score = 52.7 bits (127), Expect = 2e-10
Identities = 19/64 (29%), Positives = 33/64 (51%), Gaps = 4/64 (6%)
Query: 41 HLVVHRDT--KAYQCV--TCGKSFRRSKDLKNHHNLHTGKRPYTCPWCSRTFANGSNCRS 96
+L+ + + Y C +C + F RS +L H +HTG++P+ C C R F+ + +
Sbjct: 8 NLLNYVVPKMRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTT 67
Query: 97 HKRR 100
H R
Sbjct: 68 HIRT 71
Score = 37.7 bits (88), Expect = 1e-04
Identities = 20/66 (30%), Positives = 29/66 (43%), Gaps = 3/66 (4%)
Query: 11 LKLHLDTHGETPYGCPH--CPMKLNTRRTLRMHLVVHRDTKAYQCVTCGKSFRRSKDLKN 68
L ++ PY CP C + + L H+ +H K +QC C ++F RS L
Sbjct: 9 LLNYVVPK-MRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTT 67
Query: 69 HHNLHT 74
H HT
Sbjct: 68 HIRTHT 73
>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid
binding, KIAA1227 protein, structural genomics; NMR
{Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Length = 107
Score = 53.4 bits (127), Expect = 4e-10
Identities = 23/89 (25%), Positives = 35/89 (39%), Gaps = 3/89 (3%)
Query: 17 THGETPYGCPHCPMKLNTRRTLRMHLVVHRDTKAYQCVTCGKSFRRSKDLKNHHNLHTGK 76
+ Y C C KL++ H + R+ A C C F S +LK H
Sbjct: 11 VENKEVYQCRLCNAKLSSLLEQGSHERLCRN--AAVCPYCSLRFF-SPELKQEHESKCEY 67
Query: 77 RPYTCPWCSRTFANGSNCRSHKRRMHPEE 105
+ TC C RTF + + H+ +H +
Sbjct: 68 KKLTCLECMRTFKSSFSIWRHQVEVHNQN 96
>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 115
Score = 52.5 bits (125), Expect = 8e-10
Identities = 17/108 (15%), Positives = 34/108 (31%), Gaps = 6/108 (5%)
Query: 11 LKLHLDTH-GETPYGCPHCPMKLNTRRTLRMHL-----VVHRDTKAYQCVTCGKSFRRSK 64
KL+ G + + C C +T L +H+ + + S R +
Sbjct: 7 GKLYGSIFTGASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKPRKR 66
Query: 65 DLKNHHNLHTGKRPYTCPWCSRTFANGSNCRSHKRRMHPEELKLYESS 112
L ++ C +C +F + + H + + SS
Sbjct: 67 SLLEMEGKEDAQKVLKCMYCGHSFESLQDLSVHMIKTKHYQKVSGPSS 114
Score = 35.9 bits (82), Expect = 0.001
Identities = 12/78 (15%), Positives = 21/78 (26%)
Query: 62 RSKDLKNHHNLHTGKRPYTCPWCSRTFANGSNCRSHKRRMHPEELKLYESSLGIVHKEKK 121
K + ++ TG + C CS + H +E+ + K
Sbjct: 3 SGSSGKLYGSIFTGASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSK 62
Query: 122 KFDVSLHPPPQPPEDHNV 139
SL + V
Sbjct: 63 PRKRSLLEMEGKEDAQKV 80
>2j7j_A Transcription factor IIIA; zinc finger module, alternative
initiation, nuclear protein, phosphorylation,
hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus
laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B
2hgh_A
Length = 85
Score = 51.9 bits (125), Expect = 8e-10
Identities = 18/80 (22%), Positives = 24/80 (30%), Gaps = 2/80 (2%)
Query: 25 CPHCPMKLNTRRTLRMHLVVHRDTKAYQC--VTCGKSFRRSKDLKNHHNLHTGKRPYTCP 82
+C L++H H Y+C C K F LK H +H G
Sbjct: 6 FENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKDD 65
Query: 83 WCSRTFANGSNCRSHKRRMH 102
CS + H H
Sbjct: 66 SCSFVGKTWTLYLKHVAECH 85
>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible
early growth response protein 1, TGFB-inducible early
growth response protein 1; NMR {Homo sapiens}
Length = 72
Score = 50.1 bits (120), Expect = 3e-09
Identities = 20/70 (28%), Positives = 32/70 (45%), Gaps = 4/70 (5%)
Query: 35 RRTLRMHLVVHRDTKAYQCV--TCGKSFRRSKDLKNHHNLHTGKRPYTCPW--CSRTFAN 90
+ +++ C CGK++ +S LK H HTG++P++C W C R FA
Sbjct: 2 SSGSSGPQIDSSRIRSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFAR 61
Query: 91 GSNCRSHKRR 100
H+R
Sbjct: 62 SDELSRHRRT 71
Score = 32.0 bits (73), Expect = 0.015
Identities = 16/64 (25%), Positives = 23/64 (35%), Gaps = 4/64 (6%)
Query: 14 HLDTHGETPYGCPH--CPMKLNTRRTLRMHLVVHRDTKAYQCV--TCGKSFRRSKDLKNH 69
+D+ + C H C L+ H H K + C C + F RS +L H
Sbjct: 9 QIDSSRIRSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRH 68
Query: 70 HNLH 73
H
Sbjct: 69 RRTH 72
>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET:
ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB:
3znf_A 4znf_A
Length = 57
Score = 48.6 bits (115), Expect = 8e-09
Identities = 17/54 (31%), Positives = 23/54 (42%)
Query: 51 YQCVTCGKSFRRSKDLKNHHNLHTGKRPYTCPWCSRTFANGSNCRSHKRRMHPE 104
Y C CG ++ LK H HT RPY C +C+ +F N H +
Sbjct: 2 YICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSKAHS 55
Score = 38.2 bits (88), Expect = 6e-05
Identities = 14/53 (26%), Positives = 21/53 (39%)
Query: 23 YGCPHCPMKLNTRRTLRMHLVVHRDTKAYQCVTCGKSFRRSKDLKNHHNLHTG 75
Y C C ++ L+ H+ H D + Y C C SF+ +L H
Sbjct: 2 YICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSKAH 54
Score = 28.9 bits (64), Expect = 0.12
Identities = 15/47 (31%), Positives = 20/47 (42%), Gaps = 1/47 (2%)
Query: 4 RFKTKYRLKLHLDTH-GETPYGCPHCPMKLNTRRTLRMHLVVHRDTK 49
R K LK H+ TH PY C +C T+ L H+ +K
Sbjct: 10 RXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSKAHSK 56
>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 47.9 bits (115), Expect = 8e-09
Identities = 15/41 (36%), Positives = 17/41 (41%)
Query: 41 HLVVHRDTKAYQCVTCGKSFRRSKDLKNHHNLHTGKRPYTC 81
K YQC CGKSF S L H HT ++P
Sbjct: 3 SGSSGEGEKPYQCSECGKSFSGSYRLTQHWITHTREKPSGP 43
Score = 34.4 bits (80), Expect = 0.001
Identities = 7/31 (22%), Positives = 13/31 (41%)
Query: 69 HHNLHTGKRPYTCPWCSRTFANGSNCRSHKR 99
+ G++PY C C ++F+ H
Sbjct: 3 SGSSGEGEKPYQCSECGKSFSGSYRLTQHWI 33
>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 47.9 bits (115), Expect = 9e-09
Identities = 16/41 (39%), Positives = 22/41 (53%)
Query: 41 HLVVHRDTKAYQCVTCGKSFRRSKDLKNHHNLHTGKRPYTC 81
K Y+C CGK+FR S L HH++H+G+RP
Sbjct: 3 SGSSGTGEKPYKCQVCGKAFRVSSHLVQHHSVHSGERPSGP 43
Score = 32.9 bits (76), Expect = 0.004
Identities = 9/31 (29%), Positives = 14/31 (45%)
Query: 69 HHNLHTGKRPYTCPWCSRTFANGSNCRSHKR 99
+ TG++PY C C + F S+ H
Sbjct: 3 SGSSGTGEKPYKCQVCGKAFRVSSHLVQHHS 33
>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 47.5 bits (114), Expect = 1e-08
Identities = 14/41 (34%), Positives = 20/41 (48%)
Query: 41 HLVVHRDTKAYQCVTCGKSFRRSKDLKNHHNLHTGKRPYTC 81
K Y+CV CGK ++R DL H +HTG++
Sbjct: 3 SGSSGSGEKPYKCVECGKGYKRRLDLDFHQRVHTGEKLSGP 43
Score = 32.9 bits (76), Expect = 0.003
Identities = 7/32 (21%), Positives = 16/32 (50%)
Query: 68 NHHNLHTGKRPYTCPWCSRTFANGSNCRSHKR 99
+ + +G++PY C C + + + H+R
Sbjct: 2 SSGSSGSGEKPYKCVECGKGYKRRLDLDFHQR 33
>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A
Length = 46
Score = 47.2 bits (113), Expect = 2e-08
Identities = 14/41 (34%), Positives = 19/41 (46%)
Query: 41 HLVVHRDTKAYQCVTCGKSFRRSKDLKNHHNLHTGKRPYTC 81
K Y C CGKSFR + L H +H+G++P
Sbjct: 3 SGSSGTGEKPYNCKECGKSFRWASCLLKHQRVHSGEKPSGP 43
Score = 35.2 bits (82), Expect = 5e-04
Identities = 10/31 (32%), Positives = 16/31 (51%)
Query: 69 HHNLHTGKRPYTCPWCSRTFANGSNCRSHKR 99
+ TG++PY C C ++F S H+R
Sbjct: 3 SGSSGTGEKPYNCKECGKSFRWASCLLKHQR 33
>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 47.2 bits (113), Expect = 2e-08
Identities = 15/41 (36%), Positives = 20/41 (48%)
Query: 41 HLVVHRDTKAYQCVTCGKSFRRSKDLKNHHNLHTGKRPYTC 81
K Y+C CGK F +DL HH +HTG++P
Sbjct: 3 SGSSGTGEKPYKCEECGKGFICRRDLYTHHMVHTGEKPSGP 43
Score = 36.4 bits (85), Expect = 2e-04
Identities = 8/32 (25%), Positives = 15/32 (46%)
Query: 68 NHHNLHTGKRPYTCPWCSRTFANGSNCRSHKR 99
+ + TG++PY C C + F + +H
Sbjct: 2 SSGSSGTGEKPYKCEECGKGFICRRDLYTHHM 33
>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 47.1 bits (113), Expect = 2e-08
Identities = 15/41 (36%), Positives = 19/41 (46%)
Query: 41 HLVVHRDTKAYQCVTCGKSFRRSKDLKNHHNLHTGKRPYTC 81
K Y C CGKSF R+ L H LH+G++P
Sbjct: 3 SGSSGTGEKLYNCKECGKSFSRAPCLLKHERLHSGEKPSGP 43
Score = 36.4 bits (85), Expect = 2e-04
Identities = 8/32 (25%), Positives = 16/32 (50%)
Query: 68 NHHNLHTGKRPYTCPWCSRTFANGSNCRSHKR 99
+ + TG++ Y C C ++F+ H+R
Sbjct: 2 SSGSSGTGEKLYNCKECGKSFSRAPCLLKHER 33
>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2ena_A 2en4_A
Length = 46
Score = 46.7 bits (112), Expect = 3e-08
Identities = 16/41 (39%), Positives = 20/41 (48%)
Query: 41 HLVVHRDTKAYQCVTCGKSFRRSKDLKNHHNLHTGKRPYTC 81
K ++CV CGK F R L HH LHTG++P
Sbjct: 3 SGSSGTGEKPFKCVECGKGFSRRSALNVHHKLHTGEKPSGP 43
Score = 34.0 bits (79), Expect = 0.002
Identities = 8/32 (25%), Positives = 16/32 (50%)
Query: 68 NHHNLHTGKRPYTCPWCSRTFANGSNCRSHKR 99
+ + TG++P+ C C + F+ S H +
Sbjct: 2 SSGSSGTGEKPFKCVECGKGFSRRSALNVHHK 33
>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 46.8 bits (112), Expect = 3e-08
Identities = 13/41 (31%), Positives = 20/41 (48%)
Query: 41 HLVVHRDTKAYQCVTCGKSFRRSKDLKNHHNLHTGKRPYTC 81
K +QC CGK F ++ L +H +HTG++P
Sbjct: 3 SGSSGSGEKPFQCEECGKRFTQNSHLHSHQRVHTGEKPSGP 43
Score = 34.4 bits (80), Expect = 0.001
Identities = 9/31 (29%), Positives = 17/31 (54%)
Query: 69 HHNLHTGKRPYTCPWCSRTFANGSNCRSHKR 99
+ +G++P+ C C + F S+ SH+R
Sbjct: 3 SGSSGSGEKPFQCEECGKRFTQNSHLHSHQR 33
>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 46.4 bits (111), Expect = 3e-08
Identities = 14/41 (34%), Positives = 20/41 (48%)
Query: 41 HLVVHRDTKAYQCVTCGKSFRRSKDLKNHHNLHTGKRPYTC 81
K Y+C CGK F +S L+ H +HTG++P
Sbjct: 3 SGSSGMGEKCYKCDVCGKEFSQSSHLQTHQRVHTGEKPSGP 43
Score = 33.3 bits (77), Expect = 0.003
Identities = 8/31 (25%), Positives = 17/31 (54%)
Query: 69 HHNLHTGKRPYTCPWCSRTFANGSNCRSHKR 99
+ G++ Y C C + F+ S+ ++H+R
Sbjct: 3 SGSSGMGEKCYKCDVCGKEFSQSSHLQTHQR 33
>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 46.4 bits (111), Expect = 3e-08
Identities = 12/41 (29%), Positives = 20/41 (48%)
Query: 41 HLVVHRDTKAYQCVTCGKSFRRSKDLKNHHNLHTGKRPYTC 81
K ++C CGK F ++ L +H +HTG++P
Sbjct: 3 SGSSGSGEKPFKCEECGKRFTQNSQLHSHQRVHTGEKPSGP 43
Score = 36.0 bits (84), Expect = 3e-04
Identities = 9/32 (28%), Positives = 17/32 (53%)
Query: 68 NHHNLHTGKRPYTCPWCSRTFANGSNCRSHKR 99
+ + +G++P+ C C + F S SH+R
Sbjct: 2 SSGSSGSGEKPFKCEECGKRFTQNSQLHSHQR 33
>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 42
Score = 46.3 bits (111), Expect = 3e-08
Identities = 14/32 (43%), Positives = 18/32 (56%)
Query: 49 KAYQCVTCGKSFRRSKDLKNHHNLHTGKRPYT 80
K Y C CG FR + LK+H +HTG P +
Sbjct: 10 KPYPCEICGTRFRHLQTLKSHLRIHTGSGPSS 41
Score = 35.9 bits (84), Expect = 2e-04
Identities = 9/31 (29%), Positives = 13/31 (41%)
Query: 69 HHNLHTGKRPYTCPWCSRTFANGSNCRSHKR 99
G++PY C C F + +SH R
Sbjct: 2 SSGSSGGEKPYPCEICGTRFRHLQTLKSHLR 32
>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 46.3 bits (111), Expect = 3e-08
Identities = 15/41 (36%), Positives = 18/41 (43%)
Query: 41 HLVVHRDTKAYQCVTCGKSFRRSKDLKNHHNLHTGKRPYTC 81
K Y+C CGK+F R L H +HTG RP
Sbjct: 3 SGSSGSGEKPYKCSECGKAFHRHTHLNEHRRIHTGYRPSGP 43
Score = 32.9 bits (76), Expect = 0.004
Identities = 8/31 (25%), Positives = 16/31 (51%)
Query: 69 HHNLHTGKRPYTCPWCSRTFANGSNCRSHKR 99
+ +G++PY C C + F ++ H+R
Sbjct: 3 SGSSGSGEKPYKCSECGKAFHRHTHLNEHRR 33
>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 46.4 bits (111), Expect = 3e-08
Identities = 14/41 (34%), Positives = 19/41 (46%)
Query: 41 HLVVHRDTKAYQCVTCGKSFRRSKDLKNHHNLHTGKRPYTC 81
K Y C CGK+F S +L H +HTG++P
Sbjct: 3 SGSSGSGEKPYVCDYCGKAFGLSAELVRHQRIHTGEKPSGP 43
Score = 34.0 bits (79), Expect = 0.002
Identities = 8/31 (25%), Positives = 16/31 (51%)
Query: 69 HHNLHTGKRPYTCPWCSRTFANGSNCRSHKR 99
+ +G++PY C +C + F + H+R
Sbjct: 3 SGSSGSGEKPYVCDYCGKAFGLSAELVRHQR 33
>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 46.4 bits (111), Expect = 4e-08
Identities = 10/41 (24%), Positives = 14/41 (34%)
Query: 41 HLVVHRDTKAYQCVTCGKSFRRSKDLKNHHNLHTGKRPYTC 81
+ Y C CGK+F R L H H ++
Sbjct: 3 SGSSGSGERPYGCNECGKNFGRHSHLIEHLKRHFREKSSGP 43
Score = 35.6 bits (83), Expect = 4e-04
Identities = 9/31 (29%), Positives = 15/31 (48%)
Query: 69 HHNLHTGKRPYTCPWCSRTFANGSNCRSHKR 99
+ +G+RPY C C + F S+ H +
Sbjct: 3 SGSSGSGERPYGCNECGKNFGRHSHLIEHLK 33
>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 46.3 bits (111), Expect = 4e-08
Identities = 13/41 (31%), Positives = 20/41 (48%)
Query: 41 HLVVHRDTKAYQCVTCGKSFRRSKDLKNHHNLHTGKRPYTC 81
+ ++C CGKSF +S L H +HTG++P
Sbjct: 3 SGSSGTGERPHKCNECGKSFIQSAHLIQHQRIHTGEKPSGP 43
Score = 32.9 bits (76), Expect = 0.003
Identities = 9/32 (28%), Positives = 18/32 (56%)
Query: 68 NHHNLHTGKRPYTCPWCSRTFANGSNCRSHKR 99
+ + TG+RP+ C C ++F ++ H+R
Sbjct: 2 SSGSSGTGERPHKCNECGKSFIQSAHLIQHQR 33
>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A
Length = 46
Score = 46.0 bits (110), Expect = 4e-08
Identities = 14/41 (34%), Positives = 19/41 (46%)
Query: 41 HLVVHRDTKAYQCVTCGKSFRRSKDLKNHHNLHTGKRPYTC 81
K Y+C CGK F R+ L H +HTG++P
Sbjct: 3 SGSSGTGEKRYKCNECGKVFSRNSQLSQHQKIHTGEKPSGP 43
Score = 34.8 bits (81), Expect = 7e-04
Identities = 8/31 (25%), Positives = 15/31 (48%)
Query: 69 HHNLHTGKRPYTCPWCSRTFANGSNCRSHKR 99
+ TG++ Y C C + F+ S H++
Sbjct: 3 SGSSGTGEKRYKCNECGKVFSRNSQLSQHQK 33
>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 46.0 bits (110), Expect = 4e-08
Identities = 14/41 (34%), Positives = 19/41 (46%)
Query: 41 HLVVHRDTKAYQCVTCGKSFRRSKDLKNHHNLHTGKRPYTC 81
K Y+C CGK F ++ L NH +HTG +P
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLANHQRIHTGVKPSGP 43
Score = 33.3 bits (77), Expect = 0.003
Identities = 14/46 (30%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
Query: 69 HHNLHTGKRPYTCPWCSRTFANGSNCRSHKRRMHPEELKLYESSLG 114
+ TG++PY C C + F S+ +H+ R+H K S G
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLANHQ-RIHTGV-KPSGPSSG 46
>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 46.0 bits (110), Expect = 4e-08
Identities = 14/41 (34%), Positives = 19/41 (46%)
Query: 41 HLVVHRDTKAYQCVTCGKSFRRSKDLKNHHNLHTGKRPYTC 81
K Y+C+ CGK+F + H LHTG+RP
Sbjct: 3 SGSSGTGEKPYKCMECGKAFGDNSSCTQHQRLHTGQRPSGP 43
Score = 36.8 bits (86), Expect = 2e-04
Identities = 11/32 (34%), Positives = 19/32 (59%)
Query: 68 NHHNLHTGKRPYTCPWCSRTFANGSNCRSHKR 99
+ + TG++PY C C + F + S+C H+R
Sbjct: 2 SSGSSGTGEKPYKCMECGKAFGDNSSCTQHQR 33
>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 46.0 bits (110), Expect = 4e-08
Identities = 10/41 (24%), Positives = 16/41 (39%)
Query: 41 HLVVHRDTKAYQCVTCGKSFRRSKDLKNHHNLHTGKRPYTC 81
+ ++C CGK F R L H LH+ ++
Sbjct: 3 SGSSGSGERPFKCNECGKGFGRRSHLAGHLRLHSREKSSGP 43
Score = 33.7 bits (78), Expect = 0.002
Identities = 14/46 (30%), Positives = 21/46 (45%), Gaps = 2/46 (4%)
Query: 69 HHNLHTGKRPYTCPWCSRTFANGSNCRSHKRRMHPEELKLYESSLG 114
+ +G+RP+ C C + F S+ H R+H E K S G
Sbjct: 3 SGSSGSGERPFKCNECGKGFGRRSHLAGH-LRLHSRE-KSSGPSSG 46
>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 46.0 bits (110), Expect = 4e-08
Identities = 14/41 (34%), Positives = 17/41 (41%)
Query: 41 HLVVHRDTKAYQCVTCGKSFRRSKDLKNHHNLHTGKRPYTC 81
K Y+C CGKSF L+ H HTG+R
Sbjct: 3 SGSSGTGEKPYKCSDCGKSFTWKSRLRIHQKCHTGERHSGP 43
Score = 35.2 bits (82), Expect = 6e-04
Identities = 10/32 (31%), Positives = 18/32 (56%)
Query: 68 NHHNLHTGKRPYTCPWCSRTFANGSNCRSHKR 99
+ + TG++PY C C ++F S R H++
Sbjct: 2 SSGSSGTGEKPYKCSDCGKSFTWKSRLRIHQK 33
>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 46.0 bits (110), Expect = 5e-08
Identities = 14/41 (34%), Positives = 20/41 (48%)
Query: 41 HLVVHRDTKAYQCVTCGKSFRRSKDLKNHHNLHTGKRPYTC 81
K Y+C CGK+FR +L H +HTG++P
Sbjct: 3 SGSSGTGEKPYKCNECGKAFRAHSNLTTHQVIHTGEKPSGP 43
Score = 34.8 bits (81), Expect = 8e-04
Identities = 10/31 (32%), Positives = 16/31 (51%)
Query: 69 HHNLHTGKRPYTCPWCSRTFANGSNCRSHKR 99
+ TG++PY C C + F SN +H+
Sbjct: 3 SGSSGTGEKPYKCNECGKAFRAHSNLTTHQV 33
>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 46.0 bits (110), Expect = 5e-08
Identities = 14/41 (34%), Positives = 19/41 (46%)
Query: 41 HLVVHRDTKAYQCVTCGKSFRRSKDLKNHHNLHTGKRPYTC 81
K Y+C CGK FR + L H +HTG++P
Sbjct: 3 SGSSGTGEKPYKCNECGKVFRHNSYLSRHQRIHTGEKPSGP 43
Score = 34.4 bits (80), Expect = 0.001
Identities = 10/32 (31%), Positives = 17/32 (53%)
Query: 68 NHHNLHTGKRPYTCPWCSRTFANGSNCRSHKR 99
+ + TG++PY C C + F + S H+R
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFRHNSYLSRHQR 33
>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 46.0 bits (110), Expect = 5e-08
Identities = 14/41 (34%), Positives = 18/41 (43%)
Query: 41 HLVVHRDTKAYQCVTCGKSFRRSKDLKNHHNLHTGKRPYTC 81
K Y+C C KSFR L H +HTG++P
Sbjct: 3 SGSSGTGEKPYKCDVCHKSFRYGSSLTVHQRIHTGEKPSGP 43
Score = 36.0 bits (84), Expect = 3e-04
Identities = 11/31 (35%), Positives = 18/31 (58%)
Query: 69 HHNLHTGKRPYTCPWCSRTFANGSNCRSHKR 99
+ TG++PY C C ++F GS+ H+R
Sbjct: 3 SGSSGTGEKPYKCDVCHKSFRYGSSLTVHQR 33
>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 45.9 bits (110), Expect = 5e-08
Identities = 13/41 (31%), Positives = 19/41 (46%)
Query: 41 HLVVHRDTKAYQCVTCGKSFRRSKDLKNHHNLHTGKRPYTC 81
K Y+C CGK F ++ L H +HTG++P
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLVRHRGIHTGEKPSGP 43
Score = 33.6 bits (78), Expect = 0.002
Identities = 9/32 (28%), Positives = 16/32 (50%)
Query: 68 NHHNLHTGKRPYTCPWCSRTFANGSNCRSHKR 99
+ + TG++PY C C + F S+ H+
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFTQNSHLVRHRG 33
>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 46.0 bits (110), Expect = 5e-08
Identities = 13/41 (31%), Positives = 18/41 (43%)
Query: 41 HLVVHRDTKAYQCVTCGKSFRRSKDLKNHHNLHTGKRPYTC 81
K Y C CGK+F L+ H +HTG++P
Sbjct: 3 SGSSGTGEKPYNCEECGKAFIHDSQLQEHQRIHTGEKPSGP 43
Score = 34.8 bits (81), Expect = 7e-04
Identities = 10/31 (32%), Positives = 17/31 (54%)
Query: 69 HHNLHTGKRPYTCPWCSRTFANGSNCRSHKR 99
+ TG++PY C C + F + S + H+R
Sbjct: 3 SGSSGTGEKPYNCEECGKAFIHDSQLQEHQR 33
>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 45.9 bits (110), Expect = 5e-08
Identities = 11/41 (26%), Positives = 17/41 (41%)
Query: 41 HLVVHRDTKAYQCVTCGKSFRRSKDLKNHHNLHTGKRPYTC 81
K Y+C CGK + R +L H +H G++
Sbjct: 3 SGSSGSVEKPYKCEDCGKGYNRRLNLDMHQRVHMGEKTSGP 43
Score = 35.9 bits (84), Expect = 2e-04
Identities = 7/32 (21%), Positives = 15/32 (46%)
Query: 68 NHHNLHTGKRPYTCPWCSRTFANGSNCRSHKR 99
+ + + ++PY C C + + N H+R
Sbjct: 2 SSGSSGSVEKPYKCEDCGKGYNRRLNLDMHQR 33
>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 48
Score = 46.1 bits (109), Expect = 5e-08
Identities = 15/41 (36%), Positives = 19/41 (46%)
Query: 45 HRDTKAYQCVTCGKSFRRSKDLKNHHNLHTGKRPYTCPWCS 85
R K C CGK FR L H H+G++PY+ S
Sbjct: 7 GRTRKQVACEICGKIFRDVYHLNRHKLSHSGEKPYSSGPSS 47
Score = 27.2 bits (60), Expect = 0.52
Identities = 5/27 (18%), Positives = 10/27 (37%)
Query: 73 HTGKRPYTCPWCSRTFANGSNCRSHKR 99
++ C C + F + + HK
Sbjct: 7 GRTRKQVACEICGKIFRDVYHLNRHKL 33
>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 46.0 bits (110), Expect = 5e-08
Identities = 13/41 (31%), Positives = 19/41 (46%)
Query: 41 HLVVHRDTKAYQCVTCGKSFRRSKDLKNHHNLHTGKRPYTC 81
K Y+C CGK F ++ L H +HTG++P
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGP 43
Score = 32.1 bits (74), Expect = 0.007
Identities = 9/31 (29%), Positives = 15/31 (48%)
Query: 69 HHNLHTGKRPYTCPWCSRTFANGSNCRSHKR 99
+ TG++PY C C + F S+ H+
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLARHRG 33
>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 46.0 bits (110), Expect = 5e-08
Identities = 13/41 (31%), Positives = 22/41 (53%)
Query: 41 HLVVHRDTKAYQCVTCGKSFRRSKDLKNHHNLHTGKRPYTC 81
K ++C CGK+FR++ L +H +HTG++P
Sbjct: 3 SGSSGSGEKPFKCKECGKAFRQNIHLASHLRIHTGEKPSGP 43
Score = 33.2 bits (77), Expect = 0.003
Identities = 8/31 (25%), Positives = 15/31 (48%)
Query: 69 HHNLHTGKRPYTCPWCSRTFANGSNCRSHKR 99
+ +G++P+ C C + F + SH R
Sbjct: 3 SGSSGSGEKPFKCKECGKAFRQNIHLASHLR 33
>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 46.0 bits (110), Expect = 5e-08
Identities = 13/41 (31%), Positives = 20/41 (48%)
Query: 41 HLVVHRDTKAYQCVTCGKSFRRSKDLKNHHNLHTGKRPYTC 81
K Y+C CGK+F + +L H +HTG++P
Sbjct: 3 SGSSGTGEKPYRCGECGKAFAQKANLTQHQRIHTGEKPSGP 43
Score = 34.8 bits (81), Expect = 7e-04
Identities = 11/32 (34%), Positives = 18/32 (56%)
Query: 68 NHHNLHTGKRPYTCPWCSRTFANGSNCRSHKR 99
+ + TG++PY C C + FA +N H+R
Sbjct: 2 SSGSSGTGEKPYRCGECGKAFAQKANLTQHQR 33
>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
PDB: 2eoi_A
Length = 46
Score = 45.6 bits (109), Expect = 6e-08
Identities = 14/41 (34%), Positives = 19/41 (46%)
Query: 41 HLVVHRDTKAYQCVTCGKSFRRSKDLKNHHNLHTGKRPYTC 81
K ++C CGKSF S L H +HTG++P
Sbjct: 3 SGSSGTGEKPFECAECGKSFSISSQLATHQRIHTGEKPSGP 43
Score = 34.4 bits (80), Expect = 0.001
Identities = 9/31 (29%), Positives = 18/31 (58%)
Query: 69 HHNLHTGKRPYTCPWCSRTFANGSNCRSHKR 99
+ TG++P+ C C ++F+ S +H+R
Sbjct: 3 SGSSGTGEKPFECAECGKSFSISSQLATHQR 33
>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 45.6 bits (109), Expect = 6e-08
Identities = 12/41 (29%), Positives = 17/41 (41%)
Query: 41 HLVVHRDTKAYQCVTCGKSFRRSKDLKNHHNLHTGKRPYTC 81
K Y C CGK+F +L H +HT ++P
Sbjct: 3 SGSSGTGEKPYICAECGKAFTIRSNLIKHQKIHTKQKPSGP 43
Score = 34.4 bits (80), Expect = 0.001
Identities = 10/32 (31%), Positives = 17/32 (53%)
Query: 68 NHHNLHTGKRPYTCPWCSRTFANGSNCRSHKR 99
+ + TG++PY C C + F SN H++
Sbjct: 2 SSGSSGTGEKPYICAECGKAFTIRSNLIKHQK 33
>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 45.6 bits (109), Expect = 6e-08
Identities = 12/41 (29%), Positives = 15/41 (36%)
Query: 41 HLVVHRDTKAYQCVTCGKSFRRSKDLKNHHNLHTGKRPYTC 81
K Y C CGK+F S L H +HT +
Sbjct: 3 SGSSGTGEKPYSCNVCGKAFVLSAHLNQHLRVHTQETLSGP 43
Score = 34.4 bits (80), Expect = 0.001
Identities = 14/47 (29%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
Query: 68 NHHNLHTGKRPYTCPWCSRTFANGSNCRSHKRRMHPEELKLYESSLG 114
+ + TG++PY+C C + F ++ H R+H +E L S G
Sbjct: 2 SSGSSGTGEKPYSCNVCGKAFVLSAHLNQHL-RVHTQE-TLSGPSSG 46
>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 42
Score = 45.6 bits (109), Expect = 6e-08
Identities = 13/40 (32%), Positives = 18/40 (45%)
Query: 41 HLVVHRDTKAYQCVTCGKSFRRSKDLKNHHNLHTGKRPYT 80
K Y+C TCG F + L+ H +HTG P +
Sbjct: 2 SSGSSGGEKPYKCETCGARFVQVAHLRAHVLIHTGSGPSS 41
Score = 35.2 bits (82), Expect = 5e-04
Identities = 8/31 (25%), Positives = 13/31 (41%)
Query: 69 HHNLHTGKRPYTCPWCSRTFANGSNCRSHKR 99
G++PY C C F ++ R+H
Sbjct: 2 SSGSSGGEKPYKCETCGARFVQVAHLRAHVL 32
>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 45.6 bits (109), Expect = 7e-08
Identities = 13/41 (31%), Positives = 18/41 (43%)
Query: 41 HLVVHRDTKAYQCVTCGKSFRRSKDLKNHHNLHTGKRPYTC 81
K Y+C CGK + +L H +HTG+RP
Sbjct: 3 SGSSGTGEKPYKCEKCGKGYNSKFNLDMHQKVHTGERPSGP 43
Score = 34.8 bits (81), Expect = 7e-04
Identities = 8/31 (25%), Positives = 16/31 (51%)
Query: 69 HHNLHTGKRPYTCPWCSRTFANGSNCRSHKR 99
+ TG++PY C C + + + N H++
Sbjct: 3 SGSSGTGEKPYKCEKCGKGYNSKFNLDMHQK 33
>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 45.6 bits (109), Expect = 7e-08
Identities = 13/41 (31%), Positives = 19/41 (46%)
Query: 41 HLVVHRDTKAYQCVTCGKSFRRSKDLKNHHNLHTGKRPYTC 81
K Y+C CGK F ++ L H +HTG++P
Sbjct: 3 SGSSGTGKKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGP 43
Score = 32.9 bits (76), Expect = 0.004
Identities = 10/31 (32%), Positives = 15/31 (48%)
Query: 69 HHNLHTGKRPYTCPWCSRTFANGSNCRSHKR 99
+ TGK+PY C C + F S+ H+
Sbjct: 3 SGSSGTGKKPYKCNECGKVFTQNSHLARHRG 33
>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 45.6 bits (109), Expect = 7e-08
Identities = 12/41 (29%), Positives = 17/41 (41%)
Query: 41 HLVVHRDTKAYQCVTCGKSFRRSKDLKNHHNLHTGKRPYTC 81
K ++C CGKSF L H +HT ++P
Sbjct: 3 SGSSGTGEKPFKCDICGKSFCGRSRLNRHSMVHTAEKPSGP 43
Score = 34.4 bits (80), Expect = 0.001
Identities = 8/32 (25%), Positives = 15/32 (46%)
Query: 68 NHHNLHTGKRPYTCPWCSRTFANGSNCRSHKR 99
+ + TG++P+ C C ++F S H
Sbjct: 2 SSGSSGTGEKPFKCDICGKSFCGRSRLNRHSM 33
>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
PDB: 2ysv_A
Length = 46
Score = 45.6 bits (109), Expect = 7e-08
Identities = 13/41 (31%), Positives = 20/41 (48%)
Query: 41 HLVVHRDTKAYQCVTCGKSFRRSKDLKNHHNLHTGKRPYTC 81
K Y+C CGK+F ++ L H +HTG++P
Sbjct: 3 SGSSGTGEKPYECKECGKAFSQTTHLIQHQRVHTGEKPSGP 43
Score = 32.5 bits (75), Expect = 0.006
Identities = 9/31 (29%), Positives = 17/31 (54%)
Query: 69 HHNLHTGKRPYTCPWCSRTFANGSNCRSHKR 99
+ TG++PY C C + F+ ++ H+R
Sbjct: 3 SGSSGTGEKPYECKECGKAFSQTTHLIQHQR 33
>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 45.6 bits (109), Expect = 7e-08
Identities = 14/41 (34%), Positives = 18/41 (43%)
Query: 41 HLVVHRDTKAYQCVTCGKSFRRSKDLKNHHNLHTGKRPYTC 81
K Y+C CGKSF + L H +HTG+ P
Sbjct: 3 SGSSGTGEKPYECSDCGKSFIKKSQLHVHQRIHTGENPSGP 43
Score = 33.3 bits (77), Expect = 0.003
Identities = 10/31 (32%), Positives = 16/31 (51%)
Query: 69 HHNLHTGKRPYTCPWCSRTFANGSNCRSHKR 99
+ TG++PY C C ++F S H+R
Sbjct: 3 SGSSGTGEKPYECSDCGKSFIKKSQLHVHQR 33
>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 45.6 bits (109), Expect = 7e-08
Identities = 12/41 (29%), Positives = 18/41 (43%)
Query: 41 HLVVHRDTKAYQCVTCGKSFRRSKDLKNHHNLHTGKRPYTC 81
K + C+ CGK+F L H +HTG++P
Sbjct: 3 SGSSGTGEKPFDCIDCGKAFSDHIGLNQHRRIHTGEKPSGP 43
Score = 35.2 bits (82), Expect = 5e-04
Identities = 8/31 (25%), Positives = 16/31 (51%)
Query: 69 HHNLHTGKRPYTCPWCSRTFANGSNCRSHKR 99
+ TG++P+ C C + F++ H+R
Sbjct: 3 SGSSGTGEKPFDCIDCGKAFSDHIGLNQHRR 33
>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 45.6 bits (109), Expect = 7e-08
Identities = 13/41 (31%), Positives = 19/41 (46%)
Query: 41 HLVVHRDTKAYQCVTCGKSFRRSKDLKNHHNLHTGKRPYTC 81
K Y+C CGK+F +L H +HTG++P
Sbjct: 3 SGSSGTGEKPYRCAECGKAFTDRSNLFTHQKIHTGEKPSGP 43
Score = 34.4 bits (80), Expect = 0.001
Identities = 10/31 (32%), Positives = 18/31 (58%)
Query: 69 HHNLHTGKRPYTCPWCSRTFANGSNCRSHKR 99
+ TG++PY C C + F + SN +H++
Sbjct: 3 SGSSGTGEKPYRCAECGKAFTDRSNLFTHQK 33
>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens}
Length = 46
Score = 45.2 bits (108), Expect = 8e-08
Identities = 10/41 (24%), Positives = 18/41 (43%)
Query: 41 HLVVHRDTKAYQCVTCGKSFRRSKDLKNHHNLHTGKRPYTC 81
K ++C C F ++ L+ H N+H G++P
Sbjct: 3 SGSSGMGEKTWKCRECDMCFSQASSLRLHQNVHVGEKPSGP 43
Score = 34.1 bits (79), Expect = 0.001
Identities = 7/31 (22%), Positives = 14/31 (45%)
Query: 69 HHNLHTGKRPYTCPWCSRTFANGSNCRSHKR 99
+ G++ + C C F+ S+ R H+
Sbjct: 3 SGSSGMGEKTWKCRECDMCFSQASSLRLHQN 33
>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 45.2 bits (108), Expect = 8e-08
Identities = 15/41 (36%), Positives = 20/41 (48%)
Query: 41 HLVVHRDTKAYQCVTCGKSFRRSKDLKNHHNLHTGKRPYTC 81
K Y+C CGK FRR+ L H +HTG++P
Sbjct: 3 SGSSGTGEKPYKCHECGKVFRRNSHLARHQLIHTGEKPSGP 43
Score = 32.8 bits (76), Expect = 0.004
Identities = 9/31 (29%), Positives = 15/31 (48%)
Query: 69 HHNLHTGKRPYTCPWCSRTFANGSNCRSHKR 99
+ TG++PY C C + F S+ H+
Sbjct: 3 SGSSGTGEKPYKCHECGKVFRRNSHLARHQL 33
>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 45.2 bits (108), Expect = 8e-08
Identities = 13/41 (31%), Positives = 20/41 (48%)
Query: 41 HLVVHRDTKAYQCVTCGKSFRRSKDLKNHHNLHTGKRPYTC 81
K Y+C CGK+F ++ L H +HTG++P
Sbjct: 3 SGSSGTGEKPYKCNECGKAFSQTSKLARHQRIHTGEKPSGP 43
Score = 33.6 bits (78), Expect = 0.002
Identities = 10/32 (31%), Positives = 17/32 (53%)
Query: 68 NHHNLHTGKRPYTCPWCSRTFANGSNCRSHKR 99
+ + TG++PY C C + F+ S H+R
Sbjct: 2 SSGSSGTGEKPYKCNECGKAFSQTSKLARHQR 33
>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 45.2 bits (108), Expect = 8e-08
Identities = 14/41 (34%), Positives = 20/41 (48%)
Query: 41 HLVVHRDTKAYQCVTCGKSFRRSKDLKNHHNLHTGKRPYTC 81
K Y+C CGK F ++ L NH +HTG++P
Sbjct: 3 SGSSGSGEKPYKCNECGKVFTQNSHLTNHWRIHTGEKPSGP 43
Score = 34.4 bits (80), Expect = 0.001
Identities = 9/32 (28%), Positives = 17/32 (53%)
Query: 68 NHHNLHTGKRPYTCPWCSRTFANGSNCRSHKR 99
+ + +G++PY C C + F S+ +H R
Sbjct: 2 SSGSSGSGEKPYKCNECGKVFTQNSHLTNHWR 33
>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 45
Score = 45.2 bits (108), Expect = 9e-08
Identities = 13/41 (31%), Positives = 19/41 (46%)
Query: 41 HLVVHRDTKAYQCVTCGKSFRRSKDLKNHHNLHTGKRPYTC 81
K ++C CGKSFR +L H +HTG++
Sbjct: 3 SGSSGTGQKPFECTHCGKSFRAKGNLVTHQRIHTGEKSGPS 43
Score = 34.4 bits (80), Expect = 0.001
Identities = 9/32 (28%), Positives = 18/32 (56%)
Query: 68 NHHNLHTGKRPYTCPWCSRTFANGSNCRSHKR 99
+ + TG++P+ C C ++F N +H+R
Sbjct: 2 SSGSSGTGQKPFECTHCGKSFRAKGNLVTHQR 33
>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 45.2 bits (108), Expect = 9e-08
Identities = 14/41 (34%), Positives = 17/41 (41%)
Query: 41 HLVVHRDTKAYQCVTCGKSFRRSKDLKNHHNLHTGKRPYTC 81
K Y+C CGK+F R L H HTG+R
Sbjct: 3 SGSSGTGEKPYKCSDCGKAFTRKSGLHIHQQSHTGERHSGP 43
Score = 33.3 bits (77), Expect = 0.003
Identities = 9/32 (28%), Positives = 16/32 (50%)
Query: 68 NHHNLHTGKRPYTCPWCSRTFANGSNCRSHKR 99
+ + TG++PY C C + F S H++
Sbjct: 2 SSGSSGTGEKPYKCSDCGKAFTRKSGLHIHQQ 33
>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 45.2 bits (108), Expect = 9e-08
Identities = 13/41 (31%), Positives = 18/41 (43%)
Query: 41 HLVVHRDTKAYQCVTCGKSFRRSKDLKNHHNLHTGKRPYTC 81
K Y+C CGK F ++ L H +HTG +P
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLARHRRVHTGGKPSGP 43
Score = 32.5 bits (75), Expect = 0.005
Identities = 15/46 (32%), Positives = 21/46 (45%), Gaps = 2/46 (4%)
Query: 69 HHNLHTGKRPYTCPWCSRTFANGSNCRSHKRRMHPEELKLYESSLG 114
+ TG++PY C C + F S+ H RR+H K S G
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLARH-RRVHTGG-KPSGPSSG 46
>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 45.2 bits (108), Expect = 1e-07
Identities = 12/41 (29%), Positives = 18/41 (43%)
Query: 41 HLVVHRDTKAYQCVTCGKSFRRSKDLKNHHNLHTGKRPYTC 81
+ Y C CGK+F +L H +HTG++P
Sbjct: 3 SGSSGTGERPYICTVCGKAFTDRSNLIKHQKIHTGEKPSGP 43
Score = 34.8 bits (81), Expect = 9e-04
Identities = 11/31 (35%), Positives = 17/31 (54%)
Query: 69 HHNLHTGKRPYTCPWCSRTFANGSNCRSHKR 99
+ TG+RPY C C + F + SN H++
Sbjct: 3 SGSSGTGERPYICTVCGKAFTDRSNLIKHQK 33
>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 45.2 bits (108), Expect = 1e-07
Identities = 13/41 (31%), Positives = 18/41 (43%)
Query: 41 HLVVHRDTKAYQCVTCGKSFRRSKDLKNHHNLHTGKRPYTC 81
K ++C CGKSF + L H +HTG+ P
Sbjct: 3 SGSSGTGEKPHECRECGKSFSFNSQLIVHQRIHTGENPSGP 43
Score = 34.0 bits (79), Expect = 0.001
Identities = 9/31 (29%), Positives = 17/31 (54%)
Query: 69 HHNLHTGKRPYTCPWCSRTFANGSNCRSHKR 99
+ TG++P+ C C ++F+ S H+R
Sbjct: 3 SGSSGTGEKPHECRECGKSFSFNSQLIVHQR 33
>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 46
Score = 45.2 bits (108), Expect = 1e-07
Identities = 12/41 (29%), Positives = 19/41 (46%)
Query: 41 HLVVHRDTKAYQCVTCGKSFRRSKDLKNHHNLHTGKRPYTC 81
+ Y+C+ CGK+F+ L H HTG++P
Sbjct: 3 SGSSGTGQRPYECIECGKAFKTKSSLICHRRSHTGEKPSGP 43
Score = 34.4 bits (80), Expect = 0.001
Identities = 11/31 (35%), Positives = 16/31 (51%)
Query: 69 HHNLHTGKRPYTCPWCSRTFANGSNCRSHKR 99
+ TG+RPY C C + F S+ H+R
Sbjct: 3 SGSSGTGQRPYECIECGKAFKTKSSLICHRR 33
>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 45.2 bits (108), Expect = 1e-07
Identities = 12/41 (29%), Positives = 19/41 (46%)
Query: 41 HLVVHRDTKAYQCVTCGKSFRRSKDLKNHHNLHTGKRPYTC 81
K ++C CGKS+ + L H +HTG++P
Sbjct: 3 SGSSGTGEKPFKCGECGKSYNQRVHLTQHQRVHTGEKPSGP 43
Score = 33.3 bits (77), Expect = 0.003
Identities = 7/31 (22%), Positives = 16/31 (51%)
Query: 69 HHNLHTGKRPYTCPWCSRTFANGSNCRSHKR 99
+ TG++P+ C C +++ + H+R
Sbjct: 3 SGSSGTGEKPFKCGECGKSYNQRVHLTQHQR 33
>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 44.8 bits (107), Expect = 1e-07
Identities = 11/41 (26%), Positives = 17/41 (41%)
Query: 41 HLVVHRDTKAYQCVTCGKSFRRSKDLKNHHNLHTGKRPYTC 81
K Y+C C K+F L H +H+G++P
Sbjct: 3 SGSSGTGEKPYECDVCRKAFSHHASLTQHQRVHSGEKPSGP 43
Score = 34.4 bits (80), Expect = 0.001
Identities = 9/31 (29%), Positives = 18/31 (58%)
Query: 69 HHNLHTGKRPYTCPWCSRTFANGSNCRSHKR 99
+ TG++PY C C + F++ ++ H+R
Sbjct: 3 SGSSGTGEKPYECDVCRKAFSHHASLTQHQR 33
>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 44.8 bits (107), Expect = 1e-07
Identities = 14/41 (34%), Positives = 20/41 (48%)
Query: 41 HLVVHRDTKAYQCVTCGKSFRRSKDLKNHHNLHTGKRPYTC 81
K YQC CGK+F ++ L H +HTG++P
Sbjct: 3 SGSSGTGGKPYQCNECGKAFSQTSKLARHQRVHTGEKPSGP 43
Score = 33.3 bits (77), Expect = 0.002
Identities = 10/31 (32%), Positives = 15/31 (48%)
Query: 69 HHNLHTGKRPYTCPWCSRTFANGSNCRSHKR 99
+ TG +PY C C + F+ S H+R
Sbjct: 3 SGSSGTGGKPYQCNECGKAFSQTSKLARHQR 33
>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A
Length = 42
Score = 44.8 bits (107), Expect = 1e-07
Identities = 11/33 (33%), Positives = 16/33 (48%)
Query: 49 KAYQCVTCGKSFRRSKDLKNHHNLHTGKRPYTC 81
Y+C CGK+F R L +H H G+ +
Sbjct: 9 NPYECSECGKAFNRKDQLISHQRTHAGESGPSS 41
Score = 29.4 bits (67), Expect = 0.062
Identities = 9/27 (33%), Positives = 13/27 (48%)
Query: 73 HTGKRPYTCPWCSRTFANGSNCRSHKR 99
+G+ PY C C + F SH+R
Sbjct: 5 SSGENPYECSECGKAFNRKDQLISHQR 31
>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 44.8 bits (107), Expect = 1e-07
Identities = 13/41 (31%), Positives = 17/41 (41%)
Query: 41 HLVVHRDTKAYQCVTCGKSFRRSKDLKNHHNLHTGKRPYTC 81
K Y C CGK+F L H +HTG++P
Sbjct: 3 SGSSGTGVKPYMCNECGKAFSVYSSLTTHQVIHTGEKPSGP 43
Score = 36.0 bits (84), Expect = 3e-04
Identities = 9/32 (28%), Positives = 17/32 (53%)
Query: 68 NHHNLHTGKRPYTCPWCSRTFANGSNCRSHKR 99
+ + TG +PY C C + F+ S+ +H+
Sbjct: 2 SSGSSGTGVKPYMCNECGKAFSVYSSLTTHQV 33
>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 44.8 bits (107), Expect = 1e-07
Identities = 12/41 (29%), Positives = 19/41 (46%)
Query: 41 HLVVHRDTKAYQCVTCGKSFRRSKDLKNHHNLHTGKRPYTC 81
K ++C C K+F +S L H +HTG++P
Sbjct: 3 SGSSGAGKKLFKCNECKKTFTQSSSLTVHQRIHTGEKPSGP 43
Score = 33.6 bits (78), Expect = 0.002
Identities = 9/31 (29%), Positives = 15/31 (48%)
Query: 69 HHNLHTGKRPYTCPWCSRTFANGSNCRSHKR 99
+ GK+ + C C +TF S+ H+R
Sbjct: 3 SGSSGAGKKLFKCNECKKTFTQSSSLTVHQR 33
>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 44.8 bits (107), Expect = 1e-07
Identities = 12/41 (29%), Positives = 16/41 (39%)
Query: 41 HLVVHRDTKAYQCVTCGKSFRRSKDLKNHHNLHTGKRPYTC 81
+ C CGK F +L H +HTG+RP
Sbjct: 3 SGSSGTGENPFICSECGKVFTHKTNLIIHQKIHTGERPSGP 43
Score = 35.2 bits (82), Expect = 5e-04
Identities = 8/32 (25%), Positives = 17/32 (53%)
Query: 68 NHHNLHTGKRPYTCPWCSRTFANGSNCRSHKR 99
+ + TG+ P+ C C + F + +N H++
Sbjct: 2 SSGSSGTGENPFICSECGKVFTHKTNLIIHQK 33
>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 44.9 bits (107), Expect = 1e-07
Identities = 10/41 (24%), Positives = 17/41 (41%)
Query: 41 HLVVHRDTKAYQCVTCGKSFRRSKDLKNHHNLHTGKRPYTC 81
K ++C CGK F + +H H+G++P
Sbjct: 3 SGSSGSGEKPFKCEECGKGFYTNSQCYSHQRSHSGEKPSGP 43
Score = 36.4 bits (85), Expect = 2e-04
Identities = 10/32 (31%), Positives = 18/32 (56%)
Query: 68 NHHNLHTGKRPYTCPWCSRTFANGSNCRSHKR 99
+ + +G++P+ C C + F S C SH+R
Sbjct: 2 SSGSSGSGEKPFKCEECGKGFYTNSQCYSHQR 33
>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 44.8 bits (107), Expect = 1e-07
Identities = 13/41 (31%), Positives = 19/41 (46%)
Query: 41 HLVVHRDTKAYQCVTCGKSFRRSKDLKNHHNLHTGKRPYTC 81
+ Y+C CGK+F R L H +HTG++P
Sbjct: 3 SGSSGTGERHYECSECGKAFARKSTLIMHQRIHTGEKPSGP 43
Score = 33.6 bits (78), Expect = 0.002
Identities = 16/46 (34%), Positives = 21/46 (45%), Gaps = 2/46 (4%)
Query: 69 HHNLHTGKRPYTCPWCSRTFANGSNCRSHKRRMHPEELKLYESSLG 114
+ TG+R Y C C + FA S H +R+H E K S G
Sbjct: 3 SGSSGTGERHYECSECGKAFARKSTLIMH-QRIHTGE-KPSGPSSG 46
>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 44.5 bits (106), Expect = 2e-07
Identities = 12/41 (29%), Positives = 17/41 (41%)
Query: 41 HLVVHRDTKAYQCVTCGKSFRRSKDLKNHHNLHTGKRPYTC 81
K Y+C C K+F + L H +HTG+R
Sbjct: 3 SGSSGSGKKPYECKECRKTFIQIGHLNQHKRVHTGERSSGP 43
Score = 32.9 bits (76), Expect = 0.003
Identities = 11/31 (35%), Positives = 16/31 (51%)
Query: 69 HHNLHTGKRPYTCPWCSRTFANGSNCRSHKR 99
+ +GK+PY C C +TF + HKR
Sbjct: 3 SGSSGSGKKPYECKECRKTFIQIGHLNQHKR 33
>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 44.5 bits (106), Expect = 2e-07
Identities = 14/41 (34%), Positives = 19/41 (46%)
Query: 41 HLVVHRDTKAYQCVTCGKSFRRSKDLKNHHNLHTGKRPYTC 81
K Y+C CGKSF + L H +HTG++P
Sbjct: 3 SGSSGTGEKPYECSICGKSFTKKSQLHVHQQIHTGEKPSGP 43
Score = 32.9 bits (76), Expect = 0.003
Identities = 9/31 (29%), Positives = 16/31 (51%)
Query: 69 HHNLHTGKRPYTCPWCSRTFANGSNCRSHKR 99
+ TG++PY C C ++F S H++
Sbjct: 3 SGSSGTGEKPYECSICGKSFTKKSQLHVHQQ 33
>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 44.4 bits (106), Expect = 2e-07
Identities = 14/41 (34%), Positives = 18/41 (43%)
Query: 41 HLVVHRDTKAYQCVTCGKSFRRSKDLKNHHNLHTGKRPYTC 81
K Y C CGKSF + L H +HTG++P
Sbjct: 3 SGSSGTGEKPYICNECGKSFIQKSHLNRHRRIHTGEKPSGP 43
Score = 34.0 bits (79), Expect = 0.001
Identities = 10/31 (32%), Positives = 17/31 (54%)
Query: 69 HHNLHTGKRPYTCPWCSRTFANGSNCRSHKR 99
+ TG++PY C C ++F S+ H+R
Sbjct: 3 SGSSGTGEKPYICNECGKSFIQKSHLNRHRR 33
>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 44.4 bits (106), Expect = 2e-07
Identities = 13/41 (31%), Positives = 19/41 (46%)
Query: 41 HLVVHRDTKAYQCVTCGKSFRRSKDLKNHHNLHTGKRPYTC 81
K ++C CGK+F R L H +HTG++P
Sbjct: 3 SGSSGTGGKHFECTECGKAFTRKSTLSMHQKIHTGEKPSGP 43
Score = 33.6 bits (78), Expect = 0.002
Identities = 7/32 (21%), Positives = 14/32 (43%)
Query: 68 NHHNLHTGKRPYTCPWCSRTFANGSNCRSHKR 99
+ + TG + + C C + F S H++
Sbjct: 2 SSGSSGTGGKHFECTECGKAFTRKSTLSMHQK 33
>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 44.4 bits (106), Expect = 2e-07
Identities = 11/41 (26%), Positives = 18/41 (43%)
Query: 41 HLVVHRDTKAYQCVTCGKSFRRSKDLKNHHNLHTGKRPYTC 81
+ Y+C CGK+F + L H +H G++P
Sbjct: 3 SGSSGTGERHYECSECGKAFIQKSTLSMHQRIHRGEKPSGP 43
Score = 33.3 bits (77), Expect = 0.003
Identities = 10/31 (32%), Positives = 14/31 (45%)
Query: 69 HHNLHTGKRPYTCPWCSRTFANGSNCRSHKR 99
+ TG+R Y C C + F S H+R
Sbjct: 3 SGSSGTGERHYECSECGKAFIQKSTLSMHQR 33
>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 44.5 bits (106), Expect = 2e-07
Identities = 10/41 (24%), Positives = 19/41 (46%)
Query: 41 HLVVHRDTKAYQCVTCGKSFRRSKDLKNHHNLHTGKRPYTC 81
+ ++C CGK F ++ + H +HTG++P
Sbjct: 3 SGSSGHGERGHRCSDCGKFFLQASNFIQHRRIHTGEKPSGP 43
Score = 35.2 bits (82), Expect = 5e-04
Identities = 9/32 (28%), Positives = 15/32 (46%)
Query: 68 NHHNLHTGKRPYTCPWCSRTFANGSNCRSHKR 99
+ + G+R + C C + F SN H+R
Sbjct: 2 SSGSSGHGERGHRCSDCGKFFLQASNFIQHRR 33
>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 44.4 bits (106), Expect = 2e-07
Identities = 13/41 (31%), Positives = 16/41 (39%)
Query: 41 HLVVHRDTKAYQCVTCGKSFRRSKDLKNHHNLHTGKRPYTC 81
K Y C CGK+FR L H HTG+ +
Sbjct: 3 SGSSGTGMKPYVCNECGKAFRSKSYLIIHTRTHTGESGPSS 43
Score = 34.0 bits (79), Expect = 0.001
Identities = 10/32 (31%), Positives = 15/32 (46%)
Query: 68 NHHNLHTGKRPYTCPWCSRTFANGSNCRSHKR 99
+ + TG +PY C C + F + S H R
Sbjct: 2 SSGSSGTGMKPYVCNECGKAFRSKSYLIIHTR 33
>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 41
Score = 44.1 bits (105), Expect = 2e-07
Identities = 14/32 (43%), Positives = 19/32 (59%)
Query: 49 KAYQCVTCGKSFRRSKDLKNHHNLHTGKRPYT 80
+ Y+C CGKSFR+ L H +HTG P +
Sbjct: 9 RVYECQECGKSFRQKGSLTLHERIHTGSGPSS 40
Score = 29.5 bits (67), Expect = 0.056
Identities = 8/27 (29%), Positives = 14/27 (51%)
Query: 73 HTGKRPYTCPWCSRTFANGSNCRSHKR 99
+G+R Y C C ++F + H+R
Sbjct: 5 SSGQRVYECQECGKSFRQKGSLTLHER 31
>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 44.1 bits (105), Expect = 2e-07
Identities = 12/41 (29%), Positives = 16/41 (39%)
Query: 41 HLVVHRDTKAYQCVTCGKSFRRSKDLKNHHNLHTGKRPYTC 81
K Y C CGK+F L H H+G++P
Sbjct: 3 SGSSGAGEKPYGCSECGKAFSSKSYLIIHMRTHSGEKPSGP 43
Score = 33.7 bits (78), Expect = 0.002
Identities = 14/47 (29%), Positives = 21/47 (44%), Gaps = 2/47 (4%)
Query: 68 NHHNLHTGKRPYTCPWCSRTFANGSNCRSHKRRMHPEELKLYESSLG 114
+ + G++PY C C + F++ S H R H E K S G
Sbjct: 2 SSGSSGAGEKPYGCSECGKAFSSKSYLIIHM-RTHSGE-KPSGPSSG 46
>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 44.1 bits (105), Expect = 2e-07
Identities = 13/41 (31%), Positives = 18/41 (43%)
Query: 41 HLVVHRDTKAYQCVTCGKSFRRSKDLKNHHNLHTGKRPYTC 81
K Y+C CGK+FR L H H+G++P
Sbjct: 3 SGSSGTGEKPYKCNECGKAFRARSSLAIHQATHSGEKPSGP 43
Score = 32.9 bits (76), Expect = 0.004
Identities = 9/31 (29%), Positives = 15/31 (48%)
Query: 69 HHNLHTGKRPYTCPWCSRTFANGSNCRSHKR 99
+ TG++PY C C + F S+ H+
Sbjct: 3 SGSSGTGEKPYKCNECGKAFRARSSLAIHQA 33
>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 44.1 bits (105), Expect = 3e-07
Identities = 14/41 (34%), Positives = 18/41 (43%)
Query: 41 HLVVHRDTKAYQCVTCGKSFRRSKDLKNHHNLHTGKRPYTC 81
K Y+C CGK+F L H +HTGK+P
Sbjct: 3 SGSSGTGEKPYECNQCGKAFSVRSSLTTHQAIHTGKKPSGP 43
Score = 33.7 bits (78), Expect = 0.002
Identities = 9/31 (29%), Positives = 17/31 (54%)
Query: 69 HHNLHTGKRPYTCPWCSRTFANGSNCRSHKR 99
+ TG++PY C C + F+ S+ +H+
Sbjct: 3 SGSSGTGEKPYECNQCGKAFSVRSSLTTHQA 33
>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 44.1 bits (105), Expect = 3e-07
Identities = 12/41 (29%), Positives = 17/41 (41%)
Query: 41 HLVVHRDTKAYQCVTCGKSFRRSKDLKNHHNLHTGKRPYTC 81
K Y+C C K+F + L H HTG++P
Sbjct: 3 SGSSGTGEKPYECKVCSKAFTQKAHLAQHQKTHTGEKPSGP 43
Score = 33.3 bits (77), Expect = 0.003
Identities = 9/31 (29%), Positives = 17/31 (54%)
Query: 69 HHNLHTGKRPYTCPWCSRTFANGSNCRSHKR 99
+ TG++PY C CS+ F ++ H++
Sbjct: 3 SGSSGTGEKPYECKVCSKAFTQKAHLAQHQK 33
>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 43.7 bits (104), Expect = 3e-07
Identities = 12/41 (29%), Positives = 17/41 (41%)
Query: 41 HLVVHRDTKAYQCVTCGKSFRRSKDLKNHHNLHTGKRPYTC 81
Y+C CGK+F R L +H H G++P
Sbjct: 3 SGSSGTGENPYECHECGKAFSRKYQLISHQRTHAGEKPSGP 43
Score = 32.9 bits (76), Expect = 0.004
Identities = 10/31 (32%), Positives = 15/31 (48%)
Query: 69 HHNLHTGKRPYTCPWCSRTFANGSNCRSHKR 99
+ TG+ PY C C + F+ SH+R
Sbjct: 3 SGSSGTGENPYECHECGKAFSRKYQLISHQR 33
>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 43.7 bits (104), Expect = 3e-07
Identities = 11/33 (33%), Positives = 13/33 (39%)
Query: 49 KAYQCVTCGKSFRRSKDLKNHHNLHTGKRPYTC 81
K +QC CG +F S L H H P
Sbjct: 11 KPFQCKECGMNFSWSCSLFKHLRSHERTDPSGP 43
Score = 36.4 bits (85), Expect = 2e-04
Identities = 11/46 (23%), Positives = 17/46 (36%), Gaps = 2/46 (4%)
Query: 69 HHNLHTGKRPYTCPWCSRTFANGSNCRSHKRRMHPEELKLYESSLG 114
+ TG++P+ C C F+ + H R H S G
Sbjct: 3 SGSSGTGEKPFQCKECGMNFSWSCSLFKHL-RSHERT-DPSGPSSG 46
>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 43.7 bits (104), Expect = 3e-07
Identities = 13/41 (31%), Positives = 19/41 (46%)
Query: 41 HLVVHRDTKAYQCVTCGKSFRRSKDLKNHHNLHTGKRPYTC 81
K Y+C CGK+F + L H +H+GK+P
Sbjct: 3 SGSSGTGEKPYECSVCGKAFSHRQSLSVHQRIHSGKKPSGP 43
Score = 32.5 bits (75), Expect = 0.006
Identities = 9/31 (29%), Positives = 17/31 (54%)
Query: 69 HHNLHTGKRPYTCPWCSRTFANGSNCRSHKR 99
+ TG++PY C C + F++ + H+R
Sbjct: 3 SGSSGTGEKPYECSVCGKAFSHRQSLSVHQR 33
>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 44
Score = 43.7 bits (104), Expect = 3e-07
Identities = 9/33 (27%), Positives = 13/33 (39%)
Query: 49 KAYQCVTCGKSFRRSKDLKNHHNLHTGKRPYTC 81
K + C C K+F L H H ++P
Sbjct: 9 KPFGCSCCEKAFSSKSYLLVHQQTHAEEKPSGP 41
Score = 30.6 bits (70), Expect = 0.026
Identities = 13/42 (30%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Query: 73 HTGKRPYTCPWCSRTFANGSNCRSHKRRMHPEELKLYESSLG 114
+G++P+ C C + F++ S H+ + H EE K S G
Sbjct: 5 SSGEKPFGCSCCEKAFSSKSYLLVHQ-QTHAEE-KPSGPSSG 44
Score = 24.8 bits (55), Expect = 3.4
Identities = 9/22 (40%), Positives = 11/22 (50%), Gaps = 1/22 (4%)
Query: 5 FKTKYRLKLHLDTH-GETPYGC 25
F +K L +H TH E P G
Sbjct: 20 FSSKSYLLVHQQTHAEEKPSGP 41
>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A
Length = 46
Score = 43.7 bits (104), Expect = 3e-07
Identities = 12/41 (29%), Positives = 14/41 (34%)
Query: 41 HLVVHRDTKAYQCVTCGKSFRRSKDLKNHHNLHTGKRPYTC 81
K Y C C K+F L H HTG +P
Sbjct: 3 SGSSGTGVKPYGCSQCAKTFSLKSQLIVHQRSHTGVKPSGP 43
Score = 33.3 bits (77), Expect = 0.003
Identities = 11/32 (34%), Positives = 18/32 (56%)
Query: 68 NHHNLHTGKRPYTCPWCSRTFANGSNCRSHKR 99
+ + TG +PY C C++TF+ S H+R
Sbjct: 2 SSGSSGTGVKPYGCSQCAKTFSLKSQLIVHQR 33
>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}
Length = 129
Score = 45.7 bits (107), Expect = 4e-07
Identities = 14/62 (22%), Positives = 23/62 (37%), Gaps = 2/62 (3%)
Query: 41 HLVVHRDTKAYQCVTCGKSFRRSKDLKNHHNLHTGKRPYTCPWCSRTFANGSNCRSHKRR 100
L+ + + C C F S LK H + + CP C + F + + H +
Sbjct: 65 RLLASKAISQFVCPLCLMPFSSSVSLKQH--IRYTEHTKVCPVCKKEFTSTDSALDHVCK 122
Query: 101 MH 102
H
Sbjct: 123 KH 124
Score = 43.8 bits (102), Expect = 2e-06
Identities = 13/60 (21%), Positives = 23/60 (38%), Gaps = 2/60 (3%)
Query: 10 RLKLHLDTHGETPYGCPHCPMKLNTRRTLRMHLVVHRDTKAYQCVTCGKSFRRSKDLKNH 69
L L + + + CP C M ++ +L+ H+ C C K F + +H
Sbjct: 62 YLYRLLASKAISQFVCPLCLMPFSSSVSLKQHIRYTE--HTKVCPVCKKEFTSTDSALDH 119
>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 43.3 bits (103), Expect = 4e-07
Identities = 9/33 (27%), Positives = 12/33 (36%)
Query: 49 KAYQCVTCGKSFRRSKDLKNHHNLHTGKRPYTC 81
K +C CGK+F L H H +
Sbjct: 11 KPCKCTECGKAFCWKSQLIMHQRTHVDDKHSGP 43
Score = 32.5 bits (75), Expect = 0.005
Identities = 9/31 (29%), Positives = 14/31 (45%)
Query: 69 HHNLHTGKRPYTCPWCSRTFANGSNCRSHKR 99
+ TG++P C C + F S H+R
Sbjct: 3 SGSSGTGEKPCKCTECGKAFCWKSQLIMHQR 33
Score = 23.7 bits (52), Expect = 9.0
Identities = 7/22 (31%), Positives = 10/22 (45%), Gaps = 1/22 (4%)
Query: 5 FKTKYRLKLHLDTH-GETPYGC 25
F K +L +H TH + G
Sbjct: 22 FCWKSQLIMHQRTHVDDKHSGP 43
>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 43.2 bits (103), Expect = 4e-07
Identities = 11/41 (26%), Positives = 16/41 (39%)
Query: 41 HLVVHRDTKAYQCVTCGKSFRRSKDLKNHHNLHTGKRPYTC 81
K Y+C C K+F +L H HTG+ +
Sbjct: 3 SGSSGTGEKPYECNECQKAFNTKSNLMVHQRTHTGESGPSS 43
Score = 34.4 bits (80), Expect = 0.001
Identities = 11/31 (35%), Positives = 16/31 (51%)
Query: 69 HHNLHTGKRPYTCPWCSRTFANGSNCRSHKR 99
+ TG++PY C C + F SN H+R
Sbjct: 3 SGSSGTGEKPYECNECQKAFNTKSNLMVHQR 33
>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 43.3 bits (103), Expect = 5e-07
Identities = 13/41 (31%), Positives = 19/41 (46%)
Query: 41 HLVVHRDTKAYQCVTCGKSFRRSKDLKNHHNLHTGKRPYTC 81
TK++QC CG+ F L H +HTG++P
Sbjct: 3 SGSSGSSTKSHQCHECGRGFTLKSHLNQHQRIHTGEKPSGP 43
Score = 32.5 bits (75), Expect = 0.005
Identities = 7/32 (21%), Positives = 14/32 (43%)
Query: 68 NHHNLHTGKRPYTCPWCSRTFANGSNCRSHKR 99
+ + + + + C C R F S+ H+R
Sbjct: 2 SSGSSGSSTKSHQCHECGRGFTLKSHLNQHQR 33
>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 42.9 bits (102), Expect = 6e-07
Identities = 13/41 (31%), Positives = 17/41 (41%)
Query: 41 HLVVHRDTKAYQCVTCGKSFRRSKDLKNHHNLHTGKRPYTC 81
K Y C CGK+F + L H HTG++P
Sbjct: 3 SGSSGSGEKPYGCNECGKTFSQKSILSAHQRTHTGEKPSGP 43
Score = 33.7 bits (78), Expect = 0.002
Identities = 10/31 (32%), Positives = 18/31 (58%)
Query: 69 HHNLHTGKRPYTCPWCSRTFANGSNCRSHKR 99
+ +G++PY C C +TF+ S +H+R
Sbjct: 3 SGSSGSGEKPYGCNECGKTFSQKSILSAHQR 33
>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 47
Score = 42.9 bits (102), Expect = 6e-07
Identities = 13/43 (30%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Query: 41 HLVVHRDTKAYQCVTCGKSFRRSKDLKNHH-NLHTGKRPYTCP 82
K Y+C+ CGK+F ++ L H HTG++P
Sbjct: 3 SGSSGTGKKPYECIECGKAFIQNTSLIRHWRYYHTGEKPSGPS 45
Score = 39.5 bits (93), Expect = 1e-05
Identities = 15/47 (31%), Positives = 21/47 (44%), Gaps = 1/47 (2%)
Query: 68 NHHNLHTGKRPYTCPWCSRTFANGSNCRSHKRRMHPEELKLYESSLG 114
+ + TGK+PY C C + F ++ H R H E K S G
Sbjct: 2 SSGSSGTGKKPYECIECGKAFIQNTSLIRHWRYYHTGE-KPSGPSSG 47
>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 42
Score = 42.9 bits (102), Expect = 7e-07
Identities = 13/40 (32%), Positives = 18/40 (45%)
Query: 41 HLVVHRDTKAYQCVTCGKSFRRSKDLKNHHNLHTGKRPYT 80
K Y+C CGK+F + L H +HTG P +
Sbjct: 2 SSGSSGGEKPYRCDQCGKAFSQKGSLIVHIRVHTGSGPSS 41
Score = 34.5 bits (80), Expect = 8e-04
Identities = 8/31 (25%), Positives = 13/31 (41%)
Query: 69 HHNLHTGKRPYTCPWCSRTFANGSNCRSHKR 99
G++PY C C + F+ + H R
Sbjct: 2 SSGSSGGEKPYRCDQCGKAFSQKGSLIVHIR 32
>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 42.9 bits (102), Expect = 7e-07
Identities = 11/41 (26%), Positives = 16/41 (39%)
Query: 41 HLVVHRDTKAYQCVTCGKSFRRSKDLKNHHNLHTGKRPYTC 81
Y+C CGK F R L +H H+G+ +
Sbjct: 3 SGSSGTGENPYECCECGKVFSRKDQLVSHQKTHSGQSGPSS 43
Score = 30.9 bits (71), Expect = 0.018
Identities = 9/31 (29%), Positives = 15/31 (48%)
Query: 69 HHNLHTGKRPYTCPWCSRTFANGSNCRSHKR 99
+ TG+ PY C C + F+ SH++
Sbjct: 3 SGSSGTGENPYECCECGKVFSRKDQLVSHQK 33
>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 42.9 bits (102), Expect = 7e-07
Identities = 11/41 (26%), Positives = 17/41 (41%)
Query: 41 HLVVHRDTKAYQCVTCGKSFRRSKDLKNHHNLHTGKRPYTC 81
K ++C C K+F +L H HTG++P
Sbjct: 3 SGSSGTGEKPFECSECQKAFNTKSNLIVHQRTHTGEKPSGP 43
Score = 34.4 bits (80), Expect = 0.001
Identities = 10/32 (31%), Positives = 17/32 (53%)
Query: 68 NHHNLHTGKRPYTCPWCSRTFANGSNCRSHKR 99
+ + TG++P+ C C + F SN H+R
Sbjct: 2 SSGSSGTGEKPFECSECQKAFNTKSNLIVHQR 33
>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens}
Length = 46
Score = 42.9 bits (102), Expect = 8e-07
Identities = 11/41 (26%), Positives = 15/41 (36%)
Query: 41 HLVVHRDTKAYQCVTCGKSFRRSKDLKNHHNLHTGKRPYTC 81
Y+C C KSF L H +HT ++P
Sbjct: 3 SGSSGAGVNPYKCSQCEKSFSGKLRLLVHQRMHTREKPSGP 43
Score = 34.1 bits (79), Expect = 0.001
Identities = 14/46 (30%), Positives = 19/46 (41%), Gaps = 2/46 (4%)
Query: 69 HHNLHTGKRPYTCPWCSRTFANGSNCRSHKRRMHPEELKLYESSLG 114
+ G PY C C ++F+ H +RMH E K S G
Sbjct: 3 SGSSGAGVNPYKCSQCEKSFSGKLRLLVH-QRMHTRE-KPSGPSSG 46
>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 44
Score = 42.1 bits (100), Expect = 1e-06
Identities = 11/41 (26%), Positives = 14/41 (34%)
Query: 41 HLVVHRDTKAYQCVTCGKSFRRSKDLKNHHNLHTGKRPYTC 81
K Y+C CGK+F L H H G +
Sbjct: 3 SGSSGSGEKPYECNECGKAFIWKSLLIVHERTHAGVSGPSS 43
Score = 32.9 bits (76), Expect = 0.004
Identities = 9/32 (28%), Positives = 16/32 (50%)
Query: 68 NHHNLHTGKRPYTCPWCSRTFANGSNCRSHKR 99
+ + +G++PY C C + F S H+R
Sbjct: 2 SSGSSGSGEKPYECNECGKAFIWKSLLIVHER 33
>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 42.2 bits (100), Expect = 1e-06
Identities = 10/41 (24%), Positives = 17/41 (41%)
Query: 41 HLVVHRDTKAYQCVTCGKSFRRSKDLKNHHNLHTGKRPYTC 81
K++ C CGK+F L+ H +H G++
Sbjct: 3 SGSSGSGEKSHTCDECGKNFCYISALRIHQRVHMGEKCSGP 43
Score = 36.4 bits (85), Expect = 2e-04
Identities = 14/46 (30%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
Query: 69 HHNLHTGKRPYTCPWCSRTFANGSNCRSHKRRMHPEELKLYESSLG 114
+ +G++ +TC C + F S R H+ R+H E K S G
Sbjct: 3 SGSSGSGEKSHTCDECGKNFCYISALRIHQ-RVHMGE-KCSGPSSG 46
>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 41.0 bits (97), Expect = 3e-06
Identities = 14/41 (34%), Positives = 19/41 (46%)
Query: 41 HLVVHRDTKAYQCVTCGKSFRRSKDLKNHHNLHTGKRPYTC 81
D+K+Y C CGK+F R L H +HT K +
Sbjct: 3 SGSSGTDSKSYNCNECGKAFTRIFHLTRHQKIHTRKSGPSS 43
Score = 32.2 bits (74), Expect = 0.006
Identities = 6/31 (19%), Positives = 12/31 (38%)
Query: 69 HHNLHTGKRPYTCPWCSRTFANGSNCRSHKR 99
+ T + Y C C + F + H++
Sbjct: 3 SGSSGTDSKSYNCNECGKAFTRIFHLTRHQK 33
>2ent_A Krueppel-like factor 15; zinc binding, transcription factor,
adipogenesis, CLCNKA, chloride channel Ka, rhodopsin,
IRBP; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 48
Score = 41.1 bits (97), Expect = 3e-06
Identities = 12/43 (27%), Positives = 16/43 (37%), Gaps = 2/43 (4%)
Query: 41 HLVVHRDTKAYQC--VTCGKSFRRSKDLKNHHNLHTGKRPYTC 81
K + C CG F RS +L H H+G +P
Sbjct: 3 SGSSGTGEKPFACTWPGCGWRFSRSDELSRHRRSHSGVKPSGP 45
Score = 33.4 bits (77), Expect = 0.002
Identities = 9/34 (26%), Positives = 16/34 (47%), Gaps = 2/34 (5%)
Query: 68 NHHNLHTGKRPYTCPW--CSRTFANGSNCRSHKR 99
+ + TG++P+ C W C F+ H+R
Sbjct: 2 SSGSSGTGEKPFACTWPGCGWRFSRSDELSRHRR 35
>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
PDB: 2yta_A
Length = 42
Score = 40.0 bits (94), Expect = 1e-05
Identities = 10/32 (31%), Positives = 13/32 (40%)
Query: 49 KAYQCVTCGKSFRRSKDLKNHHNLHTGKRPYT 80
Y C CGKSF + L H + P +
Sbjct: 10 TPYLCGQCGKSFTQRGSLAVHQRSCSQSGPSS 41
Score = 33.0 bits (76), Expect = 0.003
Identities = 8/31 (25%), Positives = 13/31 (41%)
Query: 69 HHNLHTGKRPYTCPWCSRTFANGSNCRSHKR 99
G+ PY C C ++F + H+R
Sbjct: 2 SSGSSGGETPYLCGQCGKSFTQRGSLAVHQR 32
>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 73
Score = 40.0 bits (93), Expect = 2e-05
Identities = 8/69 (11%), Positives = 20/69 (28%), Gaps = 8/69 (11%)
Query: 37 TLRMHLVVHRDTKAYQCVTCGKSFRRSKDLKNHHNLHTGKRPYTCPWCSRTFANGSNCRS 96
+ +H ++ +C CG F R + ++ C C + +
Sbjct: 5 SSGKRQKIHLGDRSQKCSKCGIIFIRRST-------LSRRKTPMCEKCRKDSCQEAALNK 57
Query: 97 HKRRMHPEE 105
+ +
Sbjct: 58 DE-GNESGK 65
Score = 39.6 bits (92), Expect = 2e-05
Identities = 14/70 (20%), Positives = 19/70 (27%), Gaps = 8/70 (11%)
Query: 11 LKLHLDTH-GETPYGCPHCPMKLNTRRTLRMHLVVHRDTKAYQCVTCGKSFRRSKDLKNH 69
H G+ C C + R TL K C C K + L
Sbjct: 6 SGKRQKIHLGDRSQKCSKCGIIFIRRSTLSRR-------KTPMCEKCRKDSCQEAALNKD 58
Query: 70 HNLHTGKRPY 79
+GK+
Sbjct: 59 EGNESGKKTS 68
Score = 32.7 bits (74), Expect = 0.008
Identities = 10/40 (25%), Positives = 11/40 (27%)
Query: 62 RSKDLKNHHNLHTGKRPYTCPWCSRTFANGSNCRSHKRRM 101
S +H G R C C F S K M
Sbjct: 2 SSGSSGKRQKIHLGDRSQKCSKCGIIFIRRSTLSRRKTPM 41
>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 42
Score = 38.8 bits (91), Expect = 2e-05
Identities = 10/33 (30%), Positives = 15/33 (45%)
Query: 49 KAYQCVTCGKSFRRSKDLKNHHNLHTGKRPYTC 81
K Y C C ++F + L H +HT K +
Sbjct: 9 KPYSCAECKETFSDNNRLVQHQKMHTVKSGPSS 41
Score = 33.5 bits (77), Expect = 0.002
Identities = 10/33 (30%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Query: 73 HTGKRPYTCPWCSRTFANGSNCRSHKRRMHPEE 105
+G++PY+C C TF++ + H ++MH +
Sbjct: 5 SSGEKPYSCAECKETFSDNNRLVQH-QKMHTVK 36
>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 95
Score = 40.0 bits (93), Expect = 3e-05
Identities = 16/73 (21%), Positives = 25/73 (34%), Gaps = 9/73 (12%)
Query: 18 HGETPYGCPHCPMKLNTRRTLRMHL----VVHRDTKAYQC-----VTCGKSFRRSKDLKN 68
+ C +T L H+ V + + C GKSF+ L N
Sbjct: 21 EAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVN 80
Query: 69 HHNLHTGKRPYTC 81
H +HTG++
Sbjct: 81 HIRVHTGEKSGPS 93
Score = 37.6 bits (87), Expect = 2e-04
Identities = 13/65 (20%), Positives = 23/65 (35%), Gaps = 9/65 (13%)
Query: 44 VHRDTKAYQCVTCGKSFRRSKDLKNH-HNLHTG---KRPYTCPW--CSR---TFANGSNC 94
+ + +C ++F +L H H G + + C W C R +F
Sbjct: 19 IDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKL 78
Query: 95 RSHKR 99
+H R
Sbjct: 79 VNHIR 83
Score = 25.7 bits (56), Expect = 3.8
Identities = 6/31 (19%), Positives = 10/31 (32%)
Query: 72 LHTGKRPYTCPWCSRTFANGSNCRSHKRRMH 102
+ + C RTF+ +H H
Sbjct: 19 IDEAQLSRPKKSCDRTFSTMHELVTHVTMEH 49
Score = 24.5 bits (53), Expect = 9.1
Identities = 9/22 (40%), Positives = 11/22 (50%), Gaps = 1/22 (4%)
Query: 5 FKTKYRLKLHLDTH-GETPYGC 25
FK KY+L H+ H GE
Sbjct: 72 FKAKYKLVNHIRVHTGEKSGPS 93
>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 44
Score = 34.4 bits (79), Expect = 0.001
Identities = 7/38 (18%), Positives = 11/38 (28%)
Query: 41 HLVVHRDTKAYQCVTCGKSFRRSKDLKNHHNLHTGKRP 78
++C C + F + L H H K
Sbjct: 3 SGSSGAGENPFKCSKCDRVFTQRNYLVQHERTHARKSG 40
Score = 30.2 bits (68), Expect = 0.038
Identities = 8/32 (25%), Positives = 14/32 (43%)
Query: 68 NHHNLHTGKRPYTCPWCSRTFANGSNCRSHKR 99
+ + G+ P+ C C R F + H+R
Sbjct: 2 SSGSSGAGENPFKCSKCDRVFTQRNYLVQHER 33
>2eou_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 44
Score = 34.5 bits (78), Expect = 0.001
Identities = 12/25 (48%), Positives = 14/25 (56%)
Query: 52 QCVTCGKSFRRSKDLKNHHNLHTGK 76
+C CGK FR S L H LH G+
Sbjct: 14 ECQECGKIFRHSSLLIEHQALHAGE 38
>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers,
4-stranded parallel/anti-parallel beta- sheet,
structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1
g.37.1.1
Length = 102
Score = 34.0 bits (77), Expect = 0.005
Identities = 12/72 (16%), Positives = 18/72 (25%), Gaps = 4/72 (5%)
Query: 38 LRMHLVVHRDTKAYQCVTCGKSFRRSKDLKNH-HNLHTGKR---PYTCPWCSRTFANGSN 93
+ + Y+C C H + H Y C C+
Sbjct: 6 HHHNQQNKKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRYDA 65
Query: 94 CRSHKRRMHPEE 105
H + HP E
Sbjct: 66 LSEHNLKYHPGE 77
Score = 31.3 bits (70), Expect = 0.048
Identities = 14/64 (21%), Positives = 22/64 (34%), Gaps = 5/64 (7%)
Query: 23 YGCPHCPMKLNTRRTLRMHLV-VHRDTKA---YQCVTCGKSFRRSKDLKNHH-NLHTGKR 77
Y C +C + H+ H + Y CV C +R L H+ H G+
Sbjct: 19 YECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRYDALSEHNLKYHPGEE 78
Query: 78 PYTC 81
+
Sbjct: 79 NFKL 82
>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger,
transcription factor, DNA binding protein; NMR {Mus
musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A
Length = 37
Score = 31.5 bits (72), Expect = 0.009
Identities = 10/32 (31%), Positives = 17/32 (53%)
Query: 69 HHNLHTGKRPYTCPWCSRTFANGSNCRSHKRR 100
TG +P+ CP C R+F+ + H++R
Sbjct: 2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKR 33
Score = 28.1 bits (63), Expect = 0.20
Identities = 11/33 (33%), Positives = 13/33 (39%)
Query: 41 HLVVHRDTKAYQCVTCGKSFRRSKDLKNHHNLH 73
K +QC C +SF RS L H H
Sbjct: 2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKRH 34
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A
1are_A
Length = 29
Score = 31.5 bits (72), Expect = 0.009
Identities = 9/29 (31%), Positives = 18/29 (62%)
Query: 49 KAYQCVTCGKSFRRSKDLKNHHNLHTGKR 77
+++ C C ++F R + LK H+ HT ++
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRSHTNEK 29
Score = 23.4 bits (51), Expect = 7.0
Identities = 8/23 (34%), Positives = 12/23 (52%)
Query: 77 RPYTCPWCSRTFANGSNCRSHKR 99
R + C C+R FA + + H R
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYR 23
>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 98
Score = 32.6 bits (73), Expect = 0.013
Identities = 14/69 (20%), Positives = 23/69 (33%), Gaps = 2/69 (2%)
Query: 46 RDTKAYQCVTCGKSFRRS-KDLKNH-HNLHTGKRPYTCPWCSRTFANGSNCRSHKRRMHP 103
+ C TC R++ LK H + C C + F + + H H
Sbjct: 20 HERGEAVCPTCNVVTRKTLVGLKKHMEVCQKLQDALKCQHCRKQFKSKAGLNYHTMAEHS 79
Query: 104 EELKLYESS 112
+ E+S
Sbjct: 80 AKPSDAEAS 88
Score = 26.4 bits (57), Expect = 2.4
Identities = 16/51 (31%), Positives = 23/51 (45%), Gaps = 6/51 (11%)
Query: 23 YGCPHCPMKLNTRRT---LRMHLVV-HRDTKAYQCVTCGKSFRRSKDLKNH 69
CP C + TR+T L+ H+ V + A +C C K F+ L H
Sbjct: 25 AVCPTC--NVVTRKTLVGLKKHMEVCQKLQDALKCQHCRKQFKSKAGLNYH 73
Score = 25.3 bits (54), Expect = 6.4
Identities = 11/46 (23%), Positives = 18/46 (39%), Gaps = 2/46 (4%)
Query: 6 KTKYRLKLHLDT--HGETPYGCPHCPMKLNTRRTLRMHLVVHRDTK 49
KT LK H++ + C HC + ++ L H + K
Sbjct: 36 KTLVGLKKHMEVCQKLQDALKCQHCRKQFKSKAGLNYHTMAEHSAK 81
>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens}
SCOP: g.37.1.1 PDB: 1va2_A
Length = 31
Score = 30.7 bits (70), Expect = 0.017
Identities = 12/31 (38%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
Query: 49 KAYQC--VTCGKSFRRSKDLKNHHNLHTGKR 77
+ + C CGK F RS +L+ H HTG++
Sbjct: 1 RPFMCTWSYCGKRFTRSDELQRHKRTHTGEK 31
Score = 23.7 bits (52), Expect = 5.1
Identities = 9/25 (36%), Positives = 12/25 (48%), Gaps = 2/25 (8%)
Query: 77 RPYTCPW--CSRTFANGSNCRSHKR 99
RP+ C W C + F + HKR
Sbjct: 1 RPFMCTWSYCGKRFTRSDELQRHKR 25
>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 96
Score = 32.1 bits (72), Expect = 0.020
Identities = 11/57 (19%), Positives = 22/57 (38%)
Query: 46 RDTKAYQCVTCGKSFRRSKDLKNHHNLHTGKRPYTCPWCSRTFANGSNCRSHKRRMH 102
D + C TC R++ + H + + +TC C + + + + H H
Sbjct: 30 VDKGSVSCPTCQAVGRKTIEGLKKHMENCKQEMFTCHHCGKQLRSLAGMKYHVMANH 86
Score = 29.1 bits (64), Expect = 0.28
Identities = 10/45 (22%), Positives = 23/45 (51%)
Query: 5 FKTKYRLKLHLDTHGETPYGCPHCPMKLNTRRTLRMHLVVHRDTK 49
KT LK H++ + + C HC +L + ++ H++ + ++
Sbjct: 45 RKTIEGLKKHMENCKQEMFTCHHCGKQLRSLAGMKYHVMANHNSL 89
>2yso_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 30.9 bits (69), Expect = 0.023
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 49 KAYQCVTCGKSFRRSKDLKNHHNLHTGKR 77
K++QC CG+ F + L H LH G++
Sbjct: 11 KSHQCRECGEIFFQYVSLIEHQVLHMGQK 39
>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription;
NMR {Mus musculus} SCOP: g.37.1.1
Length = 35
Score = 29.7 bits (66), Expect = 0.047
Identities = 10/27 (37%), Positives = 14/27 (51%)
Query: 73 HTGKRPYTCPWCSRTFANGSNCRSHKR 99
+GKRP+ C C F +NC H +
Sbjct: 2 SSGKRPFVCRICLSAFTTKANCARHLK 28
Score = 25.5 bits (55), Expect = 1.5
Identities = 11/30 (36%), Positives = 14/30 (46%)
Query: 19 GETPYGCPHCPMKLNTRRTLRMHLVVHRDT 48
G+ P+ C C T+ HL VH DT
Sbjct: 4 GKRPFVCRICLSAFTTKANCARHLKVHTDT 33
>3ray_A PR domain-containing protein 11; structural genomics consortium,
SGC, histone methylation, Zn transcriptional regulation,
chromatin, transcription; 1.73A {Homo sapiens}
Length = 237
Score = 31.3 bits (70), Expect = 0.090
Identities = 8/53 (15%), Positives = 19/53 (35%)
Query: 25 CPHCPMKLNTRRTLRMHLVVHRDTKAYQCVTCGKSFRRSKDLKNHHNLHTGKR 77
+L++ +H + R K Q + +DL+ +L ++
Sbjct: 183 SEDYMKRLHSMSQETIHRNLARGEKRLQREKSEQVLDNPEDLRGPIHLSVLRQ 235
Score = 26.7 bits (58), Expect = 3.2
Identities = 7/47 (14%), Positives = 11/47 (23%)
Query: 53 CVTCGKSFRRSKDLKNHHNLHTGKRPYTCPWCSRTFANGSNCRSHKR 99
K H NL G++ + N + R
Sbjct: 183 SEDYMKRLHSMSQETIHRNLARGEKRLQREKSEQVLDNPEDLRGPIH 229
>2elo_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 37
Score = 28.7 bits (63), Expect = 0.12
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 77 RPYTCPWCSRTFANGSNCRSHKRRMHPE 104
R Y+CP C ++F+ +SH + HPE
Sbjct: 8 RSYSCPVCEKSFSEDRLIKSHIKTNHPE 35
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 31.4 bits (70), Expect = 0.15
Identities = 20/151 (13%), Positives = 37/151 (24%), Gaps = 33/151 (21%)
Query: 9 YRLKLHLDTHGETPYGCPHCPMKLNTRRTLR-----MHLVVH---------------RDT 48
R +L+ D Y L R+ L ++++
Sbjct: 115 QRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSY 174
Query: 49 KAYQC-------VTCGKSFRRSKDLKNHHNLHTGKRPYTCPWCSRTFANGSNCRSHKRRM 101
K + L+ L P + S + +
Sbjct: 175 KVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAEL 234
Query: 102 -HPEELKLYESSLGI---VHKEK--KKFDVS 126
+ K YE+ L + V K F++S
Sbjct: 235 RRLLKSKPYENCLLVLLNVQNAKAWNAFNLS 265
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha,
coiled coil, cytoplasm, metal- binding, UBL conjugation,
UBL conjugation pathway; 2.20A {Homo sapiens}
Length = 170
Score = 30.1 bits (67), Expect = 0.21
Identities = 10/64 (15%), Positives = 20/64 (31%), Gaps = 1/64 (1%)
Query: 25 CPHCPMKLNTRRTLRMHLVVHRDTKAYQCVTCGKSFRRSKDLKNHHNLHTGKRPYTCPWC 84
CP+ H + C C + F++ + H +R +C C
Sbjct: 85 CPNEGCLHKMELRHLEDHQAHCEFALMDCPQCQRPFQK-FHINIHILKDCPRRQVSCDNC 143
Query: 85 SRTF 88
+ +
Sbjct: 144 AASM 147
>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 45
Score = 28.0 bits (61), Expect = 0.23
Identities = 10/31 (32%), Positives = 12/31 (38%)
Query: 45 HRDTKAYQCVTCGKSFRRSKDLKNHHNLHTG 75
K Y C CG F+R + H H G
Sbjct: 5 SSGEKPYSCPVCGLRFKRKDRMSYHVRSHDG 35
Score = 24.9 bits (53), Expect = 3.7
Identities = 9/27 (33%), Positives = 13/27 (48%)
Query: 73 HTGKRPYTCPWCSRTFANGSNCRSHKR 99
+G++PY+CP C F H R
Sbjct: 5 SSGEKPYSCPVCGLRFKRKDRMSYHVR 31
>1ej6_B Lambda1; icosahedral, non-equivalence, dsRNA virus, methylase,
methyltransferase, guanylyltransferase, zinc finger,
icosahedral virus; 3.60A {Reovirus SP} SCOP: i.7.1.1
PDB: 2cse_V
Length = 1275
Score = 30.6 bits (68), Expect = 0.24
Identities = 8/53 (15%), Positives = 11/53 (20%)
Query: 21 TPYGCPHCPMKLNTRRTLRMHLVVHRDTKAYQCVTCGKSFRRSKDLKNHHNLH 73
+ ++ YQC C DL H H
Sbjct: 151 STRIAEATSAIVSKHPARVGLPPTASSGHGYQCHVCSAVLFSPLDLDAHVASH 203
Score = 28.3 bits (62), Expect = 1.3
Identities = 8/68 (11%), Positives = 15/68 (22%), Gaps = 1/68 (1%)
Query: 48 TKAYQCVTCGKSFRRSKDLKNHHNLHTGKRPYTCPWCSRTFANGSNCRSHKRRMHPEELK 107
+ + Y C CS + + +H H
Sbjct: 150 MSTRIAEATSAIVSKHPARVGLPPTASSGHGYQCHVCSAVLFSPLDLDAH-VASHGLHGN 208
Query: 108 LYESSLGI 115
+ +S I
Sbjct: 209 MTLTSSEI 216
Score = 26.0 bits (56), Expect = 7.5
Identities = 7/34 (20%), Positives = 9/34 (26%)
Query: 17 THGETPYGCPHCPMKLNTRRTLRMHLVVHRDTKA 50
Y C C L + L H+ H
Sbjct: 175 ASSGHGYQCHVCSAVLFSPLDLDAHVASHGLHGN 208
>1va1_A Transcription factor SP1; C2H2 type zinc finger, DNA-binding
protein; NMR {Homo sapiens}
Length = 37
Score = 27.7 bits (62), Expect = 0.25
Identities = 9/22 (40%), Positives = 14/22 (63%)
Query: 56 CGKSFRRSKDLKNHHNLHTGKR 77
CGK + ++ L+ H HTG+R
Sbjct: 16 CGKVYGKTSHLRAHLRWHTGER 37
>2eoy_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 27.9 bits (61), Expect = 0.29
Identities = 11/30 (36%), Positives = 16/30 (53%)
Query: 45 HRDTKAYQCVTCGKSFRRSKDLKNHHNLHT 74
+ K ++C C K+F SK L H +HT
Sbjct: 7 GQKEKCFKCNKCEKTFSCSKYLTQHERIHT 36
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.1 bits (64), Expect = 0.36
Identities = 9/41 (21%), Positives = 15/41 (36%), Gaps = 15/41 (36%)
Query: 104 EELKLYESSLGIVHKEKKKFDVSLHPPPQPPEDHNVQLKVT 144
+ LK ++SL K L+ P + +K T
Sbjct: 20 QALKKLQASL----K--------LYADDSAPA---LAIKAT 45
>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 27.1 bits (59), Expect = 0.37
Identities = 9/31 (29%), Positives = 15/31 (48%)
Query: 47 DTKAYQCVTCGKSFRRSKDLKNHHNLHTGKR 77
K + C C K F+ L+ H +HT ++
Sbjct: 6 SGKIFTCEYCNKVFKFKHSLQAHLRIHTNEK 36
>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc
finger, classical zinc finger, transcription; NMR {Homo
sapiens}
Length = 30
Score = 27.0 bits (59), Expect = 0.44
Identities = 9/23 (39%), Positives = 12/23 (52%)
Query: 77 RPYTCPWCSRTFANGSNCRSHKR 99
+PY C C R FA+ + H R
Sbjct: 2 KPYVCIHCQRQFADPGALQRHVR 24
Score = 26.3 bits (57), Expect = 0.67
Identities = 10/29 (34%), Positives = 16/29 (55%)
Query: 49 KAYQCVTCGKSFRRSKDLKNHHNLHTGKR 77
K Y C+ C + F L+ H +HTG++
Sbjct: 2 KPYVCIHCQRQFADPGALQRHVRIHTGEK 30
>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc
finger, transcription; NMR {Homo sapiens}
Length = 29
Score = 27.0 bits (59), Expect = 0.44
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 49 KAYQCVTCGKSFRRSKDLKNHHNLHTGKR 77
K QCV CGK+F ++ L H HTG++
Sbjct: 1 KPCQCVMCGKAFTQASSLIAHVRQHTGEK 29
>2epp_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 66
Score = 27.9 bits (61), Expect = 0.47
Identities = 9/28 (32%), Positives = 12/28 (42%)
Query: 46 RDTKAYQCVTCGKSFRRSKDLKNHHNLH 73
R+ C CGK F + L+ H H
Sbjct: 9 REAGILPCGLCGKVFTDANRLRQHEAQH 36
>2yuc_A TNF receptor-associated factor 4; ZF-TRAF, cysteine-rich domain
associated with ring and TRAF domains protein 1,
malignant 62; NMR {Homo sapiens}
Length = 76
Score = 28.0 bits (62), Expect = 0.50
Identities = 10/34 (29%), Positives = 13/34 (38%), Gaps = 1/34 (2%)
Query: 56 CGKSFRRSKDLKNHHNLHTGKRPYTCPWCSRTFA 89
C R +DL H KR C +C F+
Sbjct: 23 CPMKLSR-RDLPAHLQHDCPKRRLKCEFCGCDFS 55
>3ung_C CMR2DHD; ferredoxin fold, nucleotide-binding, polymerase, CMR
complex function; HET: ADP; 2.31A {Pyrococcus furiosus}
PDB: 3ur3_C 4doz_A
Length = 693
Score = 29.3 bits (64), Expect = 0.53
Identities = 20/101 (19%), Positives = 33/101 (32%), Gaps = 6/101 (5%)
Query: 31 KLNTRRTLRMHLVVHRDTKAYQCVTCGKSFRRSKDLKNHHNLHTGKRP--YTCPWCSRTF 88
L R+ K ++C CG++ D+ +H NL + CP C
Sbjct: 248 SLGERKVTEERFEKSEQLKGWKCHVCGENLAIFGDMYDHDNLKSLWLDEEPLCPMCLIKR 307
Query: 89 ANGSNCRSHK----RRMHPEELKLYESSLGIVHKEKKKFDV 125
RS R ++ L + + EK D+
Sbjct: 308 YYPVWIRSKTGQKIRFESVVDVALLYKNWRKIFDEKYGKDL 348
>1njq_A Superman protein; zinc-finger, peptide-zinc complex,
beta-BETA-ALFA motif, metal binding protein; NMR
{Synthetic} SCOP: g.37.1.3 PDB: 2l1o_A
Length = 39
Score = 26.3 bits (58), Expect = 0.76
Identities = 10/29 (34%), Positives = 16/29 (55%)
Query: 49 KAYQCVTCGKSFRRSKDLKNHHNLHTGKR 77
++Y C C + FR ++ L H N+H R
Sbjct: 5 RSYTCSFCKREFRSAQALGGHMNVHRRDR 33
>1ncs_A Peptide M30F, transcriptional factor SWI5; DNA binding motif,
transcription regulation, zinc-finger; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1
Length = 47
Score = 26.4 bits (58), Expect = 1.0
Identities = 9/31 (29%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
Query: 49 KAYQCV--TCGKSFRRSKDLKNHHNLHTGKR 77
K ++C+ C K+F+R ++++H H R
Sbjct: 17 KTFECLFPGCTKTFKRRYNIRSHIQTHLEDR 47
>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA,
metal-binding, transcription; NMR {Mus musculus}
Length = 28
Score = 25.5 bits (55), Expect = 1.2
Identities = 10/27 (37%), Positives = 15/27 (55%)
Query: 49 KAYQCVTCGKSFRRSKDLKNHHNLHTG 75
+ Y C CGK F ++ H+ +HTG
Sbjct: 2 RPYSCSVCGKRFSLKHQMETHYRVHTG 28
>2emb_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 44
Score = 26.0 bits (56), Expect = 1.4
Identities = 10/28 (35%), Positives = 12/28 (42%)
Query: 49 KAYQCVTCGKSFRRSKDLKNHHNLHTGK 76
K Y+C C +F K L H H K
Sbjct: 11 KRYECSKCQATFNLRKHLIQHQKTHAAK 38
>1zfd_A SWI5; DNA binding motif, zinc finger DNA binding domain; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1
Length = 32
Score = 25.4 bits (55), Expect = 1.6
Identities = 9/21 (42%), Positives = 11/21 (52%)
Query: 56 CGKSFRRSKDLKNHHNLHTGK 76
C K+F R+ DL H H K
Sbjct: 11 CDKAFVRNHDLIRHKKSHQEK 31
Score = 23.8 bits (51), Expect = 6.4
Identities = 8/25 (32%), Positives = 12/25 (48%), Gaps = 2/25 (8%)
Query: 77 RPYTCPW--CSRTFANGSNCRSHKR 99
RPY+C C + F + HK+
Sbjct: 2 RPYSCDHPGCDKAFVRNHDLIRHKK 26
>2ct5_A Zinc finger BED domain containing protein 1; DREF homolog, putative
C-like transposable element, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.6
Length = 73
Score = 26.3 bits (57), Expect = 1.6
Identities = 12/36 (33%), Positives = 14/36 (38%), Gaps = 3/36 (8%)
Query: 80 TCPWCSRTFA---NGSNCRSHKRRMHPEELKLYESS 112
C C A N SN H + HPEE + S
Sbjct: 31 YCRICMAQIAYSGNTSNLSYHLEKNHPEEFCEFVKS 66
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB,
transcription factor, DNA-binding, DNA-directed RNA
polymerase; 4.30A {Saccharomyces cerevisiae}
Length = 197
Score = 27.7 bits (61), Expect = 1.6
Identities = 13/67 (19%), Positives = 19/67 (28%), Gaps = 23/67 (34%)
Query: 25 CPHCPMKLNTRRTLRMHLVVHRDTKAYQCVTCGKSFRRSKDLKNHHNLHTGKRPYTCP-W 83
CP C + +V C CG + + + T W
Sbjct: 24 CPEC-------KVYPPKIVERFSEGDVVCALCGL-------VLSDKLVDTR------SEW 63
Query: 84 CSRTFAN 90
RTF+N
Sbjct: 64 --RTFSN 68
>1x6f_A Zinc finger protein 462; zinc finger domain, KIAA1803, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: g.37.1.1
Length = 88
Score = 26.4 bits (57), Expect = 2.0
Identities = 15/57 (26%), Positives = 21/57 (36%), Gaps = 4/57 (7%)
Query: 19 GETPYGCPHCPMKLNTRRTLRMHLVVHRDTKAYQCVTCGKSFRRSKDLKNHHNLHTG 75
+ Y C HC KL + L HL +H + + K R K L + G
Sbjct: 22 QNSTYQCKHCDSKLQSTAELTSHLNIHNE----EFQKRAKRQERRKQLLSKQKYADG 74
>1wjv_A Cell growth regulating nucleolar protein LYAR; DNA-binding
protein, C2H2 type zinc-finger, structural genomics;
NMR {Mus musculus} SCOP: g.37.1.2 g.37.1.2
Length = 79
Score = 26.0 bits (57), Expect = 2.5
Identities = 8/42 (19%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
Query: 51 YQCVTCGKSFRRSKDLKNHHNLHTGKRPYTCPWCSRTFANGS 92
+ C CG+S ++ + ++ H + +C C + F
Sbjct: 11 FTCNACGESVKKIQ-VEKHVSNCRNCECLSCIDCGKDFWGDD 51
>1yuz_A Nigerythrin; rubrythrin, rubredoxin, hemerythrin, electron
transfer, DIIR center, oxidoreductase; 1.40A
{Desulfovibrio vulgaris subsp} SCOP: a.25.1.1 g.41.5.1
PDB: 1yv1_A 1yux_A
Length = 202
Score = 27.0 bits (59), Expect = 2.6
Identities = 10/49 (20%), Positives = 14/49 (28%), Gaps = 13/49 (26%)
Query: 36 RTLRMHLVVHRDTKAYQCVTCGKSFRRSKDLKNHHNLHTGKRPYTCPWC 84
+ D K + C CG +H G+ CP C
Sbjct: 157 LAAYNDIDAPDDDKFHLCPICG-------------YIHKGEDFEKCPIC 192
>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 24.8 bits (53), Expect = 2.6
Identities = 12/26 (46%), Positives = 15/26 (57%)
Query: 49 KAYQCVTCGKSFRRSKDLKNHHNLHT 74
K + C CGK F+ LK+H LHT
Sbjct: 8 KTHLCDMCGKKFKSKGTLKSHKLLHT 33
>1rqg_A Methionyl-tRNA synthetase; translation, dimerization, ligase; 2.90A
{Pyrococcus abyssi} SCOP: a.27.1.1 c.26.1.1 g.41.1.1
Length = 722
Score = 27.4 bits (61), Expect = 2.7
Identities = 10/28 (35%), Positives = 12/28 (42%)
Query: 80 TCPWCSRTFANGSNCRSHKRRMHPEELK 107
TCP+C G C R + PE L
Sbjct: 142 TCPYCGAEDQKGDQCEVCGRPLTPEILI 169
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3
ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Length = 238
Score = 27.0 bits (59), Expect = 2.9
Identities = 8/42 (19%), Positives = 14/42 (33%)
Query: 61 RRSKDLKNHHNLHTGKRPYTCPWCSRTFANGSNCRSHKRRMH 102
R +++ + C C G +C + RMH
Sbjct: 163 RAILEMEQYIRETYPDAVKICNICHSLLIQGQSCETCGIRMH 204
>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1
Length = 30
Score = 24.4 bits (53), Expect = 3.5
Identities = 11/28 (39%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
Query: 49 KAYQCVTCGKSFRRSKDLKNH-HNLHTG 75
KAY C C ++F R L H +H+G
Sbjct: 1 KAYACGLCNRAFTRRDLLIRHAQKIHSG 28
Score = 24.0 bits (52), Expect = 5.0
Identities = 7/26 (26%), Positives = 12/26 (46%)
Query: 77 RPYTCPWCSRTFANGSNCRSHKRRMH 102
+ Y C C+R F H +++H
Sbjct: 1 KAYACGLCNRAFTRRDLLIRHAQKIH 26
>3v4v_B Integrin beta-7; cell adhesion, madcam-1, membrane; HET: NAG BMA
MAN 0DU; 3.10A {Homo sapiens} PDB: 3v4p_B*
Length = 503
Score = 26.8 bits (58), Expect = 3.8
Identities = 12/65 (18%), Positives = 21/65 (32%)
Query: 81 CPWCSRTFANGSNCRSHKRRMHPEELKLYESSLGIVHKEKKKFDVSLHPPPQPPEDHNVQ 140
C WC + S +R EEL L + + + + +V P
Sbjct: 42 CAWCKQLNFTASGEAEARRCARREELLARGCPLEELEEPRGQQEVLQDQPLSQGARGEGA 101
Query: 141 LKVTP 145
++ P
Sbjct: 102 TQLAP 106
>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Mus musculus}
Length = 35
Score = 24.4 bits (52), Expect = 4.2
Identities = 10/29 (34%), Positives = 14/29 (48%)
Query: 74 TGKRPYTCPWCSRTFANGSNCRSHKRRMH 102
+G Y C C + F + RSH R +H
Sbjct: 3 SGSSGYVCALCLKKFVSSIRLRSHIREVH 31
>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human
papillomavirus, HPV E6 protein, de novo protein; NMR
{Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A
Length = 29
Score = 24.1 bits (52), Expect = 4.5
Identities = 11/27 (40%), Positives = 13/27 (48%)
Query: 51 YQCVTCGKSFRRSKDLKNHHNLHTGKR 77
+ C C K F RS L H LH K+
Sbjct: 3 FACPECPKRFMRSDHLTLHILLHENKK 29
>2kfq_A FP1; protein, de novo protein; NMR {Synthetic}
Length = 32
Score = 23.9 bits (51), Expect = 4.7
Identities = 9/20 (45%), Positives = 10/20 (50%)
Query: 50 AYQCVTCGKSFRRSKDLKNH 69
A+ C C K F RS L H
Sbjct: 2 AFACPACPKRFMRSDALSKH 21
>1zu1_A DSRBP-ZFA, RNA binding protein ZFA; zinc finger protein,
helix-loop-helix, helix-turn-helix; NMR {Xenopus laevis}
SCOP: g.37.1.4 g.37.1.4
Length = 127
Score = 25.7 bits (55), Expect = 4.8
Identities = 18/96 (18%), Positives = 28/96 (29%), Gaps = 6/96 (6%)
Query: 21 TPYGCPHCPMKLNTRRTLRMHLVVHRDTKAYQCVTCGKSFRRSKDLKNHHNLHTGK---- 76
+ C C L + H + + S K
Sbjct: 31 SDTQCKVCSAVLISESQKLAHYQSRKHANKVRRYMAINQGEDSVPAKKFKAAPAEISDGE 90
Query: 77 -RPYTCPWCSRTFANGSNCRSHKR-RMHPEELKLYE 110
R CP C+ TF++ SH + H + L+L E
Sbjct: 91 DRSKCCPVCNMTFSSPVVAESHYIGKTHIKNLRLRE 126
>3pla_A NOP5, PRE mRNA splicing protein; RNA-binding, SAM, box C/D RNA;
HET: SAH; 3.15A {Sulfolobus solfataricus} PDB: 3id5_A*
Length = 388
Score = 26.3 bits (57), Expect = 5.6
Identities = 6/31 (19%), Positives = 10/31 (32%), Gaps = 2/31 (6%)
Query: 110 ESSLGIVHKEK--KKFDVSLHPPPQPPEDHN 138
+G E+ K+ D Q H+
Sbjct: 356 GRFIGDQLNEQLKKRIDEIKEKFAQHHHHHH 386
>3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein
1 (isoform 2); hydrolase, immunoglobulin domain,
nucleus, protease; 1.15A {Homo sapiens}
Length = 91
Score = 25.0 bits (55), Expect = 5.8
Identities = 5/26 (19%), Positives = 9/26 (34%)
Query: 29 PMKLNTRRTLRMHLVVHRDTKAYQCV 54
P+ T++ + V Y C
Sbjct: 43 PLTHETKKLYMVPYVDLEHQGTYWCH 68
>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress,
oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A
3pza_A 3qvd_A 1nnq_A 2hr5_A
Length = 170
Score = 25.4 bits (55), Expect = 6.8
Identities = 9/58 (15%), Positives = 13/58 (22%), Gaps = 14/58 (24%)
Query: 27 HCPMKLNTRRTLRMHLVVHRDTKAYQCVTCGKSFRRSKDLKNHHNLHTGKRPYTCPWC 84
H + + + Y C CG + P CP C
Sbjct: 116 HAELYRKAKEKAEKGEDIEIKKV-YICPICG-------------YTAVDEAPEYCPVC 159
>2d9k_A FLN29 gene product; zinc finger, ZF-TRAF, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 75
Score = 24.6 bits (53), Expect = 7.1
Identities = 10/35 (28%), Positives = 12/35 (34%), Gaps = 2/35 (5%)
Query: 52 QCVTCGKSFRRSKDLKNHHNLHTGKRPYTCPWCSR 86
C C LK H + + G R C C R
Sbjct: 19 VCQHCDLELSIL-KLKEHED-YCGARTELCGNCGR 51
>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic}
SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A
Length = 30
Score = 23.3 bits (49), Expect = 8.2
Identities = 9/29 (31%), Positives = 16/29 (55%)
Query: 77 RPYTCPWCSRTFANGSNCRSHKRRMHPEE 105
+ Y C +C A+ SN ++H + H +E
Sbjct: 1 KTYQCQYCEFRSADSSNLKTHIKTKHSKE 29
>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human
papillomavirus, HPV E6 protein, de novo protein; NMR
{Synthetic} SCOP: k.12.1.1
Length = 33
Score = 23.3 bits (50), Expect = 8.6
Identities = 10/28 (35%), Positives = 11/28 (39%)
Query: 51 YQCVTCGKSFRRSKDLKNHHNLHTGKRP 78
+ C C K F RS L H LH
Sbjct: 3 FACPECPKRFMRSDHLSKHITLHELLGE 30
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.324 0.138 0.465
Gapped
Lambda K H
0.267 0.0550 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,493,957
Number of extensions: 132116
Number of successful extensions: 1469
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1282
Number of HSP's successfully gapped: 509
Length of query: 159
Length of database: 6,701,793
Length adjustment: 86
Effective length of query: 73
Effective length of database: 4,300,587
Effective search space: 313942851
Effective search space used: 313942851
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 53 (24.6 bits)