RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy16923
(159 letters)
>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human
(Homo sapiens) [TaxId: 9606]}
Length = 36
Score = 43.0 bits (102), Expect = 2e-07
Identities = 10/34 (29%), Positives = 16/34 (47%)
Query: 73 HTGKRPYTCPWCSRTFANGSNCRSHKRRMHPEEL 106
H+G++PY C C F + H + H E +
Sbjct: 3 HSGEKPYECYICHARFTQSGTMKMHILQKHTENV 36
Score = 31.1 bits (71), Expect = 0.005
Identities = 9/33 (27%), Positives = 13/33 (39%)
Query: 44 VHRDTKAYQCVTCGKSFRRSKDLKNHHNLHTGK 76
H K Y+C C F +S +K H +
Sbjct: 2 THSGEKPYECYICHARFTQSGTMKMHILQKHTE 34
Score = 23.0 bits (50), Expect = 4.0
Identities = 9/27 (33%), Positives = 14/27 (51%)
Query: 19 GETPYGCPHCPMKLNTRRTLRMHLVVH 45
GE PY C C + T++MH++
Sbjct: 5 GEKPYECYICHARFTQSGTMKMHILQK 31
>d2dlka2 g.37.1.1 (A:38-73) Zinc finger protein 692, ZNF692 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 36
Score = 41.6 bits (98), Expect = 5e-07
Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
Query: 50 AYQC--VTCGKSFRRSKDLKNHHNLHTGKRPYTCPW 83
++ C CGKSF K LK H LH+ R Y C +
Sbjct: 1 SFSCPEPACGKSFNFKKHLKEHMKLHSDTRDYICEF 36
Score = 22.0 bits (47), Expect = 8.6
Identities = 8/23 (34%), Positives = 9/23 (39%), Gaps = 1/23 (4%)
Query: 4 RFKTKYRLKLHLDTH-GETPYGC 25
F K LK H+ H Y C
Sbjct: 12 SFNFKKHLKEHMKLHSDTRDYIC 34
>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId:
9606]}
Length = 39
Score = 41.5 bits (98), Expect = 8e-07
Identities = 15/34 (44%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Query: 49 KAYQCVTCGKSFRRSKDLKNHH-NLHTGKRPYTC 81
K Y C +CGK F R L H +HT +RP+ C
Sbjct: 4 KPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKC 37
Score = 32.3 bits (74), Expect = 0.002
Identities = 8/32 (25%), Positives = 16/32 (50%)
Query: 74 TGKRPYTCPWCSRTFANGSNCRSHKRRMHPEE 105
+ +PY C C + F+ + H +++H E
Sbjct: 1 SVGKPYICQSCGKGFSRPDHLNGHIKQVHTSE 32
>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo
sapiens) [TaxId: 9606]}
Length = 53
Score = 38.5 bits (89), Expect = 1e-05
Identities = 18/51 (35%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
Query: 49 KAYQCVTCGKSFRRSKDLKNHHNLHTGKRPYTCPWCSRTFANGSNCRSHKR 99
K Y C CGKSF H ++H G RPY C C + F + H +
Sbjct: 2 KLYPC-QCGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMK 51
Score = 35.0 bits (80), Expect = 3e-04
Identities = 14/54 (25%), Positives = 21/54 (38%), Gaps = 1/54 (1%)
Query: 20 ETPYGCPHCPMKLNTRRTLRMHLVVHRDTKAYQCVTCGKSFRRSKDLKNHHNLH 73
+ Y C C + H+ +H + Y C CGK F+ L H +H
Sbjct: 1 DKLYPC-QCGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIH 53
>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 33
Score = 38.0 bits (89), Expect = 2e-05
Identities = 16/32 (50%), Positives = 19/32 (59%)
Query: 44 VHRDTKAYQCVTCGKSFRRSKDLKNHHNLHTG 75
+H K Y CV CGK+F RS L H +HTG
Sbjct: 1 IHSGEKPYGCVECGKAFSRSSILVQHQRVHTG 32
Score = 34.9 bits (81), Expect = 2e-04
Identities = 10/27 (37%), Positives = 16/27 (59%)
Query: 73 HTGKRPYTCPWCSRTFANGSNCRSHKR 99
H+G++PY C C + F+ S H+R
Sbjct: 2 HSGEKPYGCVECGKAFSRSSILVQHQR 28
>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on
Saccharomyces cerevisiae sequence}
Length = 29
Score = 36.1 bits (84), Expect = 6e-05
Identities = 9/29 (31%), Positives = 18/29 (62%)
Query: 49 KAYQCVTCGKSFRRSKDLKNHHNLHTGKR 77
+++ C C ++F R + LK H+ HT ++
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRSHTNEK 29
Score = 27.2 bits (61), Expect = 0.12
Identities = 8/23 (34%), Positives = 12/23 (52%)
Query: 77 RPYTCPWCSRTFANGSNCRSHKR 99
R + C C+R FA + + H R
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYR 23
>d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 28
Score = 36.0 bits (84), Expect = 8e-05
Identities = 12/27 (44%), Positives = 15/27 (55%)
Query: 49 KAYQCVTCGKSFRRSKDLKNHHNLHTG 75
K +QC C ++F RS L H HTG
Sbjct: 2 KPFQCRICMRNFSRSDHLTTHIRTHTG 28
Score = 26.8 bits (60), Expect = 0.13
Identities = 7/23 (30%), Positives = 12/23 (52%)
Query: 77 RPYTCPWCSRTFANGSNCRSHKR 99
+P+ C C R F+ + +H R
Sbjct: 2 KPFQCRICMRNFSRSDHLTTHIR 24
>d1sp1a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 29
Score = 34.6 bits (80), Expect = 2e-04
Identities = 11/29 (37%), Positives = 13/29 (44%)
Query: 49 KAYQCVTCGKSFRRSKDLKNHHNLHTGKR 77
K + C C K F RS L H H K+
Sbjct: 1 KKFACPECPKRFMRSDHLSKHIKTHQNKK 29
Score = 25.4 bits (56), Expect = 0.47
Identities = 5/23 (21%), Positives = 10/23 (43%)
Query: 77 RPYTCPWCSRTFANGSNCRSHKR 99
+ + CP C + F + H +
Sbjct: 1 KKFACPECPKRFMRSDHLSKHIK 23
>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human
(Homo sapiens) [TaxId: 9606]}
Length = 36
Score = 34.6 bits (80), Expect = 3e-04
Identities = 12/32 (37%), Positives = 16/32 (50%)
Query: 73 HTGKRPYTCPWCSRTFANGSNCRSHKRRMHPE 104
HTG++PY C C +TF H +R H
Sbjct: 3 HTGEKPYACSHCDKTFRQKQLLDMHFKRYHDP 34
Score = 33.5 bits (77), Expect = 7e-04
Identities = 10/33 (30%), Positives = 14/33 (42%)
Query: 44 VHRDTKAYQCVTCGKSFRRSKDLKNHHNLHTGK 76
H K Y C C K+FR+ + L H +
Sbjct: 2 THTGEKPYACSHCDKTFRQKQLLDMHFKRYHDP 34
Score = 26.2 bits (58), Expect = 0.35
Identities = 11/31 (35%), Positives = 14/31 (45%)
Query: 19 GETPYGCPHCPMKLNTRRTLRMHLVVHRDTK 49
GE PY C HC ++ L MH + D
Sbjct: 5 GEKPYACSHCDKTFRQKQLLDMHFKRYHDPN 35
>d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing
protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId:
9606]}
Length = 38
Score = 33.2 bits (76), Expect = 0.001
Identities = 8/31 (25%), Positives = 15/31 (48%)
Query: 69 HHNLHTGKRPYTCPWCSRTFANGSNCRSHKR 99
+R Y C C ++F++ S+ H+R
Sbjct: 3 SEWQQRERRRYKCDECGKSFSHSSDLSKHRR 33
Score = 32.4 bits (74), Expect = 0.001
Identities = 15/35 (42%), Positives = 18/35 (51%)
Query: 41 HLVVHRDTKAYQCVTCGKSFRRSKDLKNHHNLHTG 75
R+ + Y+C CGKSF S DL H HTG
Sbjct: 3 SEWQQRERRRYKCDECGKSFSHSSDLSKHRRTHTG 37
Score = 23.6 bits (51), Expect = 2.8
Identities = 6/33 (18%), Positives = 7/33 (21%), Gaps = 1/33 (3%)
Query: 14 HLDTH-GETPYGCPHCPMKLNTRRTLRMHLVVH 45
Y C C + L H H
Sbjct: 3 SEWQQRERRRYKCDECGKSFSHSSDLSKHRRTH 35
>d1x6ea2 g.37.1.1 (A:41-66) Zinc finger protein 24 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 26
Score = 32.9 bits (76), Expect = 0.001
Identities = 12/26 (46%), Positives = 18/26 (69%)
Query: 49 KAYQCVTCGKSFRRSKDLKNHHNLHT 74
K Y+C+ CGK+F ++ L NH +HT
Sbjct: 1 KPYKCLECGKAFSQNSGLINHQRIHT 26
Score = 24.9 bits (55), Expect = 0.73
Identities = 8/23 (34%), Positives = 13/23 (56%)
Query: 77 RPYTCPWCSRTFANGSNCRSHKR 99
+PY C C + F+ S +H+R
Sbjct: 1 KPYKCLECGKAFSQNSGLINHQR 23
>d1a1ia1 g.37.1.1 (A:103-131) ZIF268 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 29
Score = 32.7 bits (75), Expect = 0.001
Identities = 12/29 (41%), Positives = 16/29 (55%), Gaps = 2/29 (6%)
Query: 49 KAYQC--VTCGKSFRRSKDLKNHHNLHTG 75
+ Y C +C + F RS DL H +HTG
Sbjct: 1 RPYACPVESCDRRFSRSADLTRHIRIHTG 29
Score = 23.8 bits (52), Expect = 1.6
Identities = 10/25 (40%), Positives = 13/25 (52%), Gaps = 2/25 (8%)
Query: 77 RPYTCPW--CSRTFANGSNCRSHKR 99
RPY CP C R F+ ++ H R
Sbjct: 1 RPYACPVESCDRRFSRSADLTRHIR 25
>d2glia3 g.37.1.1 (A:168-197) Five-finger GLI1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 30
Score = 32.7 bits (75), Expect = 0.001
Identities = 12/29 (41%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
Query: 49 KAYQC--VTCGKSFRRSKDLKNHHNLHTG 75
K ++C C KS+ R ++LK H HTG
Sbjct: 1 KPHKCTFEGCRKSYSRLENLKTHLRSHTG 29
Score = 24.2 bits (53), Expect = 1.5
Identities = 6/25 (24%), Positives = 15/25 (60%), Gaps = 2/25 (8%)
Query: 77 RPYTCPW--CSRTFANGSNCRSHKR 99
+P+ C + C ++++ N ++H R
Sbjct: 1 KPHKCTFEGCRKSYSRLENLKTHLR 25
>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 37
Score = 32.8 bits (75), Expect = 0.001
Identities = 9/31 (29%), Positives = 16/31 (51%)
Query: 69 HHNLHTGKRPYTCPWCSRTFANGSNCRSHKR 99
TG +P+ CP C R+F+ + H++
Sbjct: 2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRK 32
Score = 29.7 bits (67), Expect = 0.018
Identities = 11/35 (31%), Positives = 13/35 (37%)
Query: 41 HLVVHRDTKAYQCVTCGKSFRRSKDLKNHHNLHTG 75
K +QC C +SF RS L H H
Sbjct: 2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKRHML 36
Score = 22.8 bits (49), Expect = 4.8
Identities = 8/33 (24%), Positives = 11/33 (33%), Gaps = 1/33 (3%)
Query: 14 HLDTH-GETPYGCPHCPMKLNTRRTLRMHLVVH 45
G P+ CP C + L +H H
Sbjct: 2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKRH 34
>d1sp2a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 31
Score = 32.3 bits (74), Expect = 0.002
Identities = 12/31 (38%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
Query: 49 KAYQC--VTCGKSFRRSKDLKNHHNLHTGKR 77
+ + C CGK F RS +L+ H HTG++
Sbjct: 1 RPFMCTWSYCGKRFTRSDELQRHKRTHTGEK 31
Score = 23.8 bits (52), Expect = 1.8
Identities = 9/25 (36%), Positives = 12/25 (48%), Gaps = 2/25 (8%)
Query: 77 RPYTCPW--CSRTFANGSNCRSHKR 99
RP+ C W C + F + HKR
Sbjct: 1 RPFMCTWSYCGKRFTRSDELQRHKR 25
>d1zfda_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 32
Score = 32.3 bits (74), Expect = 0.002
Identities = 11/30 (36%), Positives = 14/30 (46%), Gaps = 2/30 (6%)
Query: 49 KAYQC--VTCGKSFRRSKDLKNHHNLHTGK 76
+ Y C C K+F R+ DL H H K
Sbjct: 2 RPYSCDHPGCDKAFVRNHDLIRHKKSHQEK 31
Score = 25.0 bits (55), Expect = 0.86
Identities = 8/25 (32%), Positives = 12/25 (48%), Gaps = 2/25 (8%)
Query: 77 RPYTCPW--CSRTFANGSNCRSHKR 99
RPY+C C + F + HK+
Sbjct: 2 RPYSCDHPGCDKAFVRNHDLIRHKK 26
>d1ubdc3 g.37.1.1 (C:351-380) Ying-yang 1 (yy1, zinc finger
domain) {Human (Homo sapiens) [TaxId: 9606]}
Length = 30
Score = 31.6 bits (72), Expect = 0.003
Identities = 12/29 (41%), Positives = 16/29 (55%), Gaps = 2/29 (6%)
Query: 49 KAYQC--VTCGKSFRRSKDLKNHHNLHTG 75
K +QC CGK F +L+ H +HTG
Sbjct: 1 KPFQCTFEGCGKRFSLDFNLRTHVRIHTG 29
Score = 22.3 bits (48), Expect = 7.7
Identities = 8/25 (32%), Positives = 14/25 (56%), Gaps = 2/25 (8%)
Query: 77 RPYTCPW--CSRTFANGSNCRSHKR 99
+P+ C + C + F+ N R+H R
Sbjct: 1 KPFQCTFEGCGKRFSLDFNLRTHVR 25
>d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 35
Score = 31.6 bits (72), Expect = 0.004
Identities = 6/31 (19%), Positives = 11/31 (35%)
Query: 45 HRDTKAYQCVTCGKSFRRSKDLKNHHNLHTG 75
+ + C C +F + H +HT
Sbjct: 2 SSGKRPFVCRICLSAFTTKANCARHLKVHTD 32
Score = 30.5 bits (69), Expect = 0.009
Identities = 12/34 (35%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Query: 73 HTGKRPYTCPWCSRTFANGSNCRSHKRRMHPEEL 106
+GKRP+ C C F +NC H ++H + L
Sbjct: 2 SSGKRPFVCRICLSAFTTKANCARHL-KVHTDTL 34
Score = 25.9 bits (57), Expect = 0.44
Identities = 11/30 (36%), Positives = 14/30 (46%)
Query: 19 GETPYGCPHCPMKLNTRRTLRMHLVVHRDT 48
G+ P+ C C T+ HL VH DT
Sbjct: 4 GKRPFVCRICLSAFTTKANCARHLKVHTDT 33
>d1ubdc2 g.37.1.1 (C:323-350) Ying-yang 1 (yy1, zinc finger
domain) {Human (Homo sapiens) [TaxId: 9606]}
Length = 28
Score = 30.7 bits (69), Expect = 0.007
Identities = 12/24 (50%), Positives = 15/24 (62%)
Query: 53 CVTCGKSFRRSKDLKNHHNLHTGK 76
C CGK+F S LK H +HTG+
Sbjct: 5 CAECGKAFVESSKLKRHQLVHTGE 28
>d2epra1 g.37.1.1 (A:350-384) PATZ1 {Human (Homo sapiens) [TaxId:
9606]}
Length = 35
Score = 29.3 bits (65), Expect = 0.022
Identities = 14/35 (40%), Positives = 18/35 (51%)
Query: 46 RDTKAYQCVTCGKSFRRSKDLKNHHNLHTGKRPYT 80
R K C CGK FR L H H+G++PY+
Sbjct: 1 RTRKQVACEICGKIFRDVYHLNRHKLSHSGEKPYS 35
>d2glia4 g.37.1.1 (A:198-228) Five-finger GLI1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 31
Score = 28.3 bits (63), Expect = 0.052
Identities = 12/31 (38%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
Query: 77 RPYTC--PWCSRTFANGSNCRSHKRRMHPEE 105
+PY C CS+ F+N S+ H+ R H E
Sbjct: 1 KPYMCEHEGCSKAFSNASDRAKHQNRTHSNE 31
>d1ncsa_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 47
Score = 27.6 bits (61), Expect = 0.12
Identities = 7/38 (18%), Positives = 16/38 (42%), Gaps = 2/38 (5%)
Query: 64 KDLKNHHNLHTGKRPYTCPWC--SRTFANGSNCRSHKR 99
+ + + + + C + ++TF N RSH +
Sbjct: 4 RGSIDKYVKEMPDKTFECLFPGCTKTFKRRYNIRSHIQ 41
Score = 23.7 bits (51), Expect = 2.7
Identities = 7/27 (25%), Positives = 13/27 (48%)
Query: 51 YQCVTCGKSFRRSKDLKNHHNLHTGKR 77
C K+F+R ++++H H R
Sbjct: 21 CLFPGCTKTFKRRYNIRSHIQTHLEDR 47
>d2eppa1 g.37.1.1 (A:286-338) PATZ1 {Human (Homo sapiens) [TaxId:
9606]}
Length = 53
Score = 27.6 bits (61), Expect = 0.12
Identities = 9/28 (32%), Positives = 12/28 (42%)
Query: 46 RDTKAYQCVTCGKSFRRSKDLKNHHNLH 73
R+ C CGK F + L+ H H
Sbjct: 2 REAGILPCGLCGKVFTDANRLRQHEAQH 29
>d1ubdc4 g.37.1.1 (C:381-408) Ying-yang 1 (yy1, zinc finger
domain) {Human (Homo sapiens) [TaxId: 9606]}
Length = 28
Score = 26.9 bits (60), Expect = 0.17
Identities = 10/28 (35%), Positives = 14/28 (50%), Gaps = 2/28 (7%)
Query: 49 KAYQC--VTCGKSFRRSKDLKNHHNLHT 74
+ Y C C K F +S +LK+H H
Sbjct: 1 RPYVCPFDGCNKKFAQSTNLKSHILTHA 28
Score = 26.2 bits (58), Expect = 0.25
Identities = 11/25 (44%), Positives = 16/25 (64%), Gaps = 2/25 (8%)
Query: 77 RPYTCPW--CSRTFANGSNCRSHKR 99
RPY CP+ C++ FA +N +SH
Sbjct: 1 RPYVCPFDGCNKKFAQSTNLKSHIL 25
>d1njqa_ g.37.1.3 (A:) SUPERMAN zinc finger domain {Thale cress
(Arabidopsis thaliana) [TaxId: 3702]}
Length = 37
Score = 26.6 bits (59), Expect = 0.20
Identities = 10/29 (34%), Positives = 16/29 (55%)
Query: 49 KAYQCVTCGKSFRRSKDLKNHHNLHTGKR 77
++Y C C + FR ++ L H N+H R
Sbjct: 4 RSYTCSFCKREFRSAQALGGHMNVHRRDR 32
Score = 22.4 bits (48), Expect = 7.0
Identities = 9/32 (28%), Positives = 13/32 (40%)
Query: 77 RPYTCPWCSRTFANGSNCRSHKRRMHPEELKL 108
R YTC +C R F + H + +L
Sbjct: 4 RSYTCSFCKREFRSAQALGGHMNVHRRDRARL 35
>d1a1ia3 g.37.1.1 (A:160-187) ZIF268 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 28
Score = 26.3 bits (58), Expect = 0.23
Identities = 10/25 (40%), Positives = 14/25 (56%)
Query: 49 KAYQCVTCGKSFRRSKDLKNHHNLH 73
K + C CG+ F RS + K H +H
Sbjct: 2 KPFACDICGRKFARSDERKRHTKIH 26
Score = 23.2 bits (50), Expect = 3.1
Identities = 10/27 (37%), Positives = 15/27 (55%), Gaps = 5/27 (18%)
Query: 76 KRPYTCPWCSRTFANGSNCRSHKRRMH 102
++P+ C C R FA RS +R+ H
Sbjct: 1 EKPFACDICGRKFA-----RSDERKRH 22
>d1zr9a1 g.37.1.4 (A:28-94) Zinc finger protein 593, ZNF593 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 67
Score = 26.6 bits (59), Expect = 0.44
Identities = 7/19 (36%), Positives = 12/19 (63%)
Query: 51 YQCVTCGKSFRRSKDLKNH 69
++C+ C + F S +LK H
Sbjct: 16 HRCLACARYFIDSTNLKTH 34
>d1pfva3 g.41.1.1 (A:141-175) Methionyl-tRNA synthetase (MetRS),
Zn-domain {Escherichia coli [TaxId: 562]}
Length = 35
Score = 25.4 bits (56), Expect = 0.57
Identities = 10/28 (35%), Positives = 10/28 (35%)
Query: 80 TCPWCSRTFANGSNCRSHKRRMHPEELK 107
TCP C G NC P EL
Sbjct: 4 TCPKCKSPDQYGDNCEVCGATYSPTELI 31
>d1klra_ g.37.1.1 (A:) ZFY {Human (Homo sapiens) [TaxId: 9606]}
Length = 30
Score = 24.7 bits (53), Expect = 1.1
Identities = 9/29 (31%), Positives = 16/29 (55%)
Query: 77 RPYTCPWCSRTFANGSNCRSHKRRMHPEE 105
+ Y C +C A+ SN ++H + H +E
Sbjct: 1 KTYQCQYCEFRSADSSNLKTHIKTKHSKE 29
>d2dmda2 g.37.1.1 (A:8-33) Zinc finger protein 64, ZFP68 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 26
Score = 24.3 bits (52), Expect = 1.3
Identities = 12/25 (48%), Positives = 14/25 (56%)
Query: 51 YQCVTCGKSFRRSKDLKNHHNLHTG 75
++C CGK F R LK H HTG
Sbjct: 2 HKCEVCGKCFSRKDKLKTHMRCHTG 26
>d2dlqa3 g.37.1.1 (A:63-92) GLI-Krueppel family member HKR3 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 30
Score = 23.9 bits (51), Expect = 1.8
Identities = 10/28 (35%), Positives = 17/28 (60%)
Query: 49 KAYQCVTCGKSFRRSKDLKNHHNLHTGK 76
+ + C C ++FRR +L+ H HTG+
Sbjct: 3 QVFTCSVCQETFRRRMELRLHMVSHTGE 30
>d2dlqa4 g.37.1.1 (A:8-34) GLI-Krueppel family member HKR3 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 27
Score = 23.9 bits (51), Expect = 1.8
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 52 QCVTCGKSFRRSKDLKNHHNLHTGKR 77
+C TC K F LK H+ HTG++
Sbjct: 2 ECPTCHKKFLSKYYLKVHNRKHTGEK 27
>d2ct5a1 g.37.1.6 (A:8-67) Zinc finger BED domain-containing protein
1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 60
Score = 24.5 bits (53), Expect = 2.0
Identities = 11/31 (35%), Positives = 12/31 (38%), Gaps = 3/31 (9%)
Query: 80 TCPWCSRTFA---NGSNCRSHKRRMHPEELK 107
C C A N SN H + HPEE
Sbjct: 24 YCRICMAQIAYSGNTSNLSYHLEKNHPEEFC 54
>d1x6fa1 g.37.1.1 (A:8-82) Zinc finger protein 462, ZNF462 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 75
Score = 24.3 bits (52), Expect = 3.3
Identities = 10/29 (34%), Positives = 14/29 (48%)
Query: 19 GETPYGCPHCPMKLNTRRTLRMHLVVHRD 47
+ Y C HC KL + L HL +H +
Sbjct: 15 QNSTYQCKHCDSKLQSTAELTSHLNIHNE 43
>d2adra2 g.37.1.1 (A:131-161) ADR1 {Synthetic, based on
Saccharomyces cerevisiae sequence}
Length = 31
Score = 22.8 bits (49), Expect = 4.3
Identities = 8/26 (30%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
Query: 51 YQCVTCGKSF-RRSKDLKNHHNLHTG 75
Y C C ++F RR +++ +H+G
Sbjct: 2 YPCGLCNRAFTRRDLLIRHAQKIHSG 27
Score = 22.8 bits (49), Expect = 4.4
Identities = 8/25 (32%), Positives = 12/25 (48%)
Query: 78 PYTCPWCSRTFANGSNCRSHKRRMH 102
PY C C+R F H +++H
Sbjct: 1 PYPCGLCNRAFTRRDLLIRHAQKIH 25
>d1rqga3 g.41.1.1 (A:139-173) Methionyl-tRNA synthetase (MetRS),
Zn-domain {Pyrococcus abyssi [TaxId: 29292]}
Length = 35
Score = 23.0 bits (50), Expect = 4.3
Identities = 10/28 (35%), Positives = 12/28 (42%)
Query: 80 TCPWCSRTFANGSNCRSHKRRMHPEELK 107
TCP+C G C R + PE L
Sbjct: 4 TCPYCGAEDQKGDQCEVCGRPLTPEILI 31
>d2dlqa1 g.37.1.1 (A:93-118) GLI-Krueppel family member HKR3
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 26
Score = 22.8 bits (48), Expect = 4.8
Identities = 8/19 (42%), Positives = 14/19 (73%)
Query: 51 YQCVTCGKSFRRSKDLKNH 69
Y+C +C + F + KDL++H
Sbjct: 3 YKCSSCSQQFMQKKDLQSH 21
Score = 22.5 bits (47), Expect = 5.6
Identities = 9/25 (36%), Positives = 14/25 (56%)
Query: 78 PYTCPWCSRTFANGSNCRSHKRRMH 102
PY C CS+ F + +SH ++H
Sbjct: 2 PYKCSSCSQQFMQKKDLQSHMIKLH 26
>d1x6ha1 g.37.1.1 (A:44-80) Transcriptional repressor CTCF {Human
(Homo sapiens) [TaxId: 9606]}
Length = 37
Score = 22.4 bits (47), Expect = 7.0
Identities = 9/26 (34%), Positives = 13/26 (50%)
Query: 50 AYQCVTCGKSFRRSKDLKNHHNLHTG 75
A+ C CGK+F R + H + G
Sbjct: 4 AFVCSKCGKTFTRRNTMARHADNCAG 29
>d1nnqa2 g.41.5.1 (A:135-171) Rubrerythrin, C-terminal domain
{Archaeon Pyrococcus furiosus [TaxId: 2261]}
Length = 37
Score = 22.4 bits (48), Expect = 7.1
Identities = 9/36 (25%), Positives = 10/36 (27%), Gaps = 13/36 (36%)
Query: 49 KAYQCVTCGKSFRRSKDLKNHHNLHTGKRPYTCPWC 84
K Y C CG + P CP C
Sbjct: 4 KVYICPICG-------------YTAVDEAPEYCPVC 26
>d1yuza2 g.41.5.1 (A:167-202) Nigerythrin, C-terminal domain
{Desulfovibrio vulgaris [TaxId: 881]}
Length = 36
Score = 21.9 bits (47), Expect = 8.8
Identities = 10/38 (26%), Positives = 13/38 (34%), Gaps = 13/38 (34%)
Query: 47 DTKAYQCVTCGKSFRRSKDLKNHHNLHTGKRPYTCPWC 84
D K + C CG +H G+ CP C
Sbjct: 2 DDKFHLCPICG-------------YIHKGEDFEKCPIC 26
>d2ct1a1 g.37.1.1 (A:44-71) Transcriptional repressor CTCF {Human
(Homo sapiens) [TaxId: 9606]}
Length = 28
Score = 21.9 bits (46), Expect = 9.0
Identities = 8/24 (33%), Positives = 11/24 (45%)
Query: 79 YTCPWCSRTFANGSNCRSHKRRMH 102
+ CP C A S+ H R+ H
Sbjct: 3 FHCPHCDTVIARKSDLGVHLRKQH 26
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.324 0.138 0.465
Gapped
Lambda K H
0.267 0.0580 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 645,817
Number of extensions: 29112
Number of successful extensions: 305
Number of sequences better than 10.0: 1
Number of HSP's gapped: 300
Number of HSP's successfully gapped: 136
Length of query: 159
Length of database: 2,407,596
Length adjustment: 78
Effective length of query: 81
Effective length of database: 1,336,656
Effective search space: 108269136
Effective search space used: 108269136
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 49 (23.0 bits)