BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy16924
(94 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|328718182|ref|XP_001948033.2| PREDICTED: RNA-binding protein 38-like [Acyrthosiphon pisum]
Length = 292
Score = 82.4 bits (202), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 37/43 (86%), Positives = 39/43 (90%)
Query: 1 MGDRPAAERACKDPNPIIDGRKANVNLAILGAKPRGTLPPGIS 43
MGDRPAAERACK+PNPIIDGRKANVNLAILGAKPRG L P +
Sbjct: 97 MGDRPAAERACKEPNPIIDGRKANVNLAILGAKPRGNLQPAFA 139
>gi|332026355|gb|EGI66484.1| RNA-binding protein 38 [Acromyrmex echinatior]
Length = 248
Score = 81.3 bits (199), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 44/68 (64%), Positives = 48/68 (70%), Gaps = 11/68 (16%)
Query: 1 MGDRPAAERACKDPNPIIDGRKANVNLAILGAKPRGTL------PPGISHQRS-----LA 49
MGDRPAAERACKDPNPIIDGRKANVNLAILGAKPRG L P + HQ L
Sbjct: 170 MGDRPAAERACKDPNPIIDGRKANVNLAILGAKPRGNLQTTKLIPINVFHQSGCIVSFLE 229
Query: 50 LGSNDFEY 57
L ++D +Y
Sbjct: 230 LKNHDMKY 237
>gi|383852443|ref|XP_003701737.1| PREDICTED: RNA-binding protein 38-like isoform 2 [Megachile
rotundata]
Length = 279
Score = 80.9 bits (198), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 37/38 (97%), Positives = 37/38 (97%)
Query: 1 MGDRPAAERACKDPNPIIDGRKANVNLAILGAKPRGTL 38
MGDRPAAERACKDPNPIIDGRKANVNLAILGAKPRG L
Sbjct: 94 MGDRPAAERACKDPNPIIDGRKANVNLAILGAKPRGNL 131
>gi|328786606|ref|XP_003250820.1| PREDICTED: RNA-binding protein 38-like isoform 1 [Apis mellifera]
gi|340719620|ref|XP_003398247.1| PREDICTED: RNA-binding protein 38-like [Bombus terrestris]
gi|350410698|ref|XP_003489112.1| PREDICTED: RNA-binding protein 38-like [Bombus impatiens]
Length = 280
Score = 80.9 bits (198), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 37/38 (97%), Positives = 37/38 (97%)
Query: 1 MGDRPAAERACKDPNPIIDGRKANVNLAILGAKPRGTL 38
MGDRPAAERACKDPNPIIDGRKANVNLAILGAKPRG L
Sbjct: 94 MGDRPAAERACKDPNPIIDGRKANVNLAILGAKPRGNL 131
>gi|345485059|ref|XP_001606177.2| PREDICTED: RNA-binding protein 38-like isoform 1 [Nasonia
vitripennis]
Length = 271
Score = 79.7 bits (195), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 36/38 (94%), Positives = 37/38 (97%)
Query: 1 MGDRPAAERACKDPNPIIDGRKANVNLAILGAKPRGTL 38
MGDRPAAERACKDPNPIIDGRKANVNLAI+GAKPRG L
Sbjct: 90 MGDRPAAERACKDPNPIIDGRKANVNLAIIGAKPRGNL 127
>gi|307198651|gb|EFN79487.1| RNA-binding protein 24-B [Harpegnathos saltator]
Length = 225
Score = 79.3 bits (194), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 36/38 (94%), Positives = 37/38 (97%)
Query: 1 MGDRPAAERACKDPNPIIDGRKANVNLAILGAKPRGTL 38
MGD+PAAERACKDPNPIIDGRKANVNLAILGAKPRG L
Sbjct: 94 MGDKPAAERACKDPNPIIDGRKANVNLAILGAKPRGNL 131
>gi|322794836|gb|EFZ17783.1| hypothetical protein SINV_12982 [Solenopsis invicta]
Length = 135
Score = 79.3 bits (194), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 37/38 (97%), Positives = 37/38 (97%)
Query: 1 MGDRPAAERACKDPNPIIDGRKANVNLAILGAKPRGTL 38
MGDRPAAERACKDPNPIIDGRKANVNLAILGAKPRG L
Sbjct: 96 MGDRPAAERACKDPNPIIDGRKANVNLAILGAKPRGNL 133
>gi|345485061|ref|XP_003425186.1| PREDICTED: RNA-binding protein 38-like isoform 2 [Nasonia
vitripennis]
Length = 327
Score = 79.0 bits (193), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 36/38 (94%), Positives = 37/38 (97%)
Query: 1 MGDRPAAERACKDPNPIIDGRKANVNLAILGAKPRGTL 38
MGDRPAAERACKDPNPIIDGRKANVNLAI+GAKPRG L
Sbjct: 90 MGDRPAAERACKDPNPIIDGRKANVNLAIIGAKPRGNL 127
>gi|380017616|ref|XP_003692748.1| PREDICTED: RNA-binding protein 38-like [Apis florea]
Length = 333
Score = 78.2 bits (191), Expect = 5e-13, Method: Composition-based stats.
Identities = 37/38 (97%), Positives = 37/38 (97%)
Query: 1 MGDRPAAERACKDPNPIIDGRKANVNLAILGAKPRGTL 38
MGDRPAAERACKDPNPIIDGRKANVNLAILGAKPRG L
Sbjct: 94 MGDRPAAERACKDPNPIIDGRKANVNLAILGAKPRGNL 131
>gi|357605924|gb|EHJ64837.1| RNA binding region containing protein 1 [Danaus plexippus]
Length = 261
Score = 77.8 bits (190), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 36/38 (94%), Positives = 36/38 (94%)
Query: 1 MGDRPAAERACKDPNPIIDGRKANVNLAILGAKPRGTL 38
MGDR AAERACKDPNPIIDGRKANVNLAILGAKPRG L
Sbjct: 77 MGDRAAAERACKDPNPIIDGRKANVNLAILGAKPRGNL 114
>gi|383852441|ref|XP_003701736.1| PREDICTED: RNA-binding protein 38-like isoform 1 [Megachile
rotundata]
Length = 330
Score = 77.4 bits (189), Expect = 1e-12, Method: Composition-based stats.
Identities = 37/38 (97%), Positives = 37/38 (97%)
Query: 1 MGDRPAAERACKDPNPIIDGRKANVNLAILGAKPRGTL 38
MGDRPAAERACKDPNPIIDGRKANVNLAILGAKPRG L
Sbjct: 94 MGDRPAAERACKDPNPIIDGRKANVNLAILGAKPRGNL 131
>gi|114053145|ref|NP_001040531.1| RNA binding region containing protein 1 [Bombyx mori]
gi|95102904|gb|ABF51393.1| RNA binding region containing protein 1 [Bombyx mori]
Length = 221
Score = 77.4 bits (189), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 36/38 (94%), Positives = 36/38 (94%)
Query: 1 MGDRPAAERACKDPNPIIDGRKANVNLAILGAKPRGTL 38
MGDR AAERACKDPNPIIDGRKANVNLAILGAKPRG L
Sbjct: 77 MGDRTAAERACKDPNPIIDGRKANVNLAILGAKPRGNL 114
>gi|328786604|ref|XP_623982.2| PREDICTED: RNA-binding protein 38-like isoform 2 [Apis mellifera]
Length = 331
Score = 77.4 bits (189), Expect = 1e-12, Method: Composition-based stats.
Identities = 37/38 (97%), Positives = 37/38 (97%)
Query: 1 MGDRPAAERACKDPNPIIDGRKANVNLAILGAKPRGTL 38
MGDRPAAERACKDPNPIIDGRKANVNLAILGAKPRG L
Sbjct: 94 MGDRPAAERACKDPNPIIDGRKANVNLAILGAKPRGNL 131
>gi|157136268|ref|XP_001656804.1| hypothetical protein AaeL_AAEL003407 [Aedes aegypti]
gi|108881072|gb|EAT45297.1| AAEL003407-PA [Aedes aegypti]
Length = 142
Score = 77.0 bits (188), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 35/41 (85%), Positives = 38/41 (92%)
Query: 1 MGDRPAAERACKDPNPIIDGRKANVNLAILGAKPRGTLPPG 41
MGDR +AERACK+PNPIIDGRKANVNLAILGAKPRG + PG
Sbjct: 82 MGDRMSAERACKEPNPIIDGRKANVNLAILGAKPRGNVTPG 122
>gi|170043941|ref|XP_001849624.1| conserved hypothetical protein [Culex quinquefasciatus]
gi|167867222|gb|EDS30605.1| conserved hypothetical protein [Culex quinquefasciatus]
Length = 143
Score = 77.0 bits (188), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 35/41 (85%), Positives = 38/41 (92%)
Query: 1 MGDRPAAERACKDPNPIIDGRKANVNLAILGAKPRGTLPPG 41
MGDR +AERACK+PNPIIDGRKANVNLAILGAKPRG + PG
Sbjct: 83 MGDRMSAERACKEPNPIIDGRKANVNLAILGAKPRGNITPG 123
>gi|312372205|gb|EFR20219.1| hypothetical protein AND_20479 [Anopheles darlingi]
Length = 211
Score = 75.9 bits (185), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 35/41 (85%), Positives = 37/41 (90%)
Query: 1 MGDRPAAERACKDPNPIIDGRKANVNLAILGAKPRGTLPPG 41
MGDR +AERACK+PNPIIDGRKANVNLAILGAKPRG PG
Sbjct: 95 MGDRMSAERACKEPNPIIDGRKANVNLAILGAKPRGNATPG 135
>gi|291233573|ref|XP_002736726.1| PREDICTED: RNA-binding protein 38-like [Saccoglossus kowalevskii]
Length = 219
Score = 75.5 bits (184), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 33/36 (91%), Positives = 34/36 (94%)
Query: 1 MGDRPAAERACKDPNPIIDGRKANVNLAILGAKPRG 36
M DRPAAERACKDPNPIIDGRKANVNLA +GAKPRG
Sbjct: 62 MADRPAAERACKDPNPIIDGRKANVNLAFIGAKPRG 97
>gi|324514938|gb|ADY46035.1| RNA-binding protein 38 [Ascaris suum]
Length = 274
Score = 73.6 bits (179), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 33/38 (86%), Positives = 34/38 (89%)
Query: 1 MGDRPAAERACKDPNPIIDGRKANVNLAILGAKPRGTL 38
M DR AAERACKDPNPIIDGRKANVNLA LGAKPRG +
Sbjct: 94 MKDRAAAERACKDPNPIIDGRKANVNLAYLGAKPRGNI 131
>gi|405963050|gb|EKC28659.1| RNA-binding protein 24-A [Crassostrea gigas]
Length = 223
Score = 73.2 bits (178), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 34/42 (80%), Positives = 35/42 (83%)
Query: 1 MGDRPAAERACKDPNPIIDGRKANVNLAILGAKPRGTLPPGI 42
M +R AAERACKDPNPIIDGRKANVNLA LGAKPRG GI
Sbjct: 61 MANREAAERACKDPNPIIDGRKANVNLAYLGAKPRGIQQSGI 102
>gi|170577719|ref|XP_001894113.1| hypothetical protein Bm1_13240 [Brugia malayi]
gi|158599447|gb|EDP37051.1| hypothetical protein Bm1_13240 [Brugia malayi]
Length = 355
Score = 72.8 bits (177), Expect = 3e-11, Method: Composition-based stats.
Identities = 33/38 (86%), Positives = 34/38 (89%)
Query: 1 MGDRPAAERACKDPNPIIDGRKANVNLAILGAKPRGTL 38
M DR AAERACKDPNPIIDGRKANVNLA LGAKPRG +
Sbjct: 160 MKDRVAAERACKDPNPIIDGRKANVNLAYLGAKPRGNI 197
>gi|402594358|gb|EJW88284.1| suppressor protein 12 [Wuchereria bancrofti]
Length = 296
Score = 71.6 bits (174), Expect = 5e-11, Method: Composition-based stats.
Identities = 33/38 (86%), Positives = 34/38 (89%)
Query: 1 MGDRPAAERACKDPNPIIDGRKANVNLAILGAKPRGTL 38
M DR AAERACKDPNPIIDGRKANVNLA LGAKPRG +
Sbjct: 101 MKDRVAAERACKDPNPIIDGRKANVNLAYLGAKPRGNI 138
>gi|312094706|ref|XP_003148114.1| hypothetical protein LOAG_12553 [Loa loa]
gi|307756721|gb|EFO15955.1| hypothetical protein LOAG_12553 [Loa loa]
Length = 299
Score = 71.6 bits (174), Expect = 6e-11, Method: Composition-based stats.
Identities = 33/38 (86%), Positives = 34/38 (89%)
Query: 1 MGDRPAAERACKDPNPIIDGRKANVNLAILGAKPRGTL 38
M DR AAERACKDPNPIIDGRKANVNLA LGAKPRG +
Sbjct: 104 MKDRAAAERACKDPNPIIDGRKANVNLAYLGAKPRGNI 141
>gi|339247123|ref|XP_003375195.1| RNA-binding protein 24 [Trichinella spiralis]
gi|316971505|gb|EFV55264.1| RNA-binding protein 24 [Trichinella spiralis]
Length = 402
Score = 71.6 bits (174), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 33/42 (78%), Positives = 35/42 (83%)
Query: 1 MGDRPAAERACKDPNPIIDGRKANVNLAILGAKPRGTLPPGI 42
M DRP+AERACK+PNPIIDGRKANVNLA LGAKPR L G
Sbjct: 129 MKDRPSAERACKEPNPIIDGRKANVNLAYLGAKPRNNLHLGF 170
>gi|147906083|ref|NP_001079578.1| RNA-binding protein 24-B [Xenopus laevis]
gi|82247547|sp|Q9I8B3.1|RB24B_XENLA RecName: Full=RNA-binding protein 24-B; AltName: Full=MTR-1a;
AltName: Full=RNA-binding motif protein 24-B
gi|8920429|emb|CAB96420.1| hypothetical protein [Xenopus laevis]
gi|27924271|gb|AAH44956.1| MGC52530 protein [Xenopus laevis]
Length = 224
Score = 71.6 bits (174), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 34/43 (79%), Positives = 36/43 (83%), Gaps = 1/43 (2%)
Query: 1 MGDRPAAERACKDPNPIIDGRKANVNLAILGAKPRGTLPPGIS 43
M DR AAERACKDPNPIIDGRKANVNLA LGAKPR + PG +
Sbjct: 59 MADRAAAERACKDPNPIIDGRKANVNLAYLGAKPR-IMQPGFA 100
>gi|90093320|ref|NP_001035014.1| RNA-binding protein 24 [Danio rerio]
gi|89130440|gb|AAI14277.1| Zgc:136803 [Danio rerio]
Length = 142
Score = 71.6 bits (174), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 36/43 (83%), Positives = 36/43 (83%), Gaps = 1/43 (2%)
Query: 1 MGDRPAAERACKDPNPIIDGRKANVNLAILGAKPRGTLPPGIS 43
M DR AAERACKDPNPIIDGRKANVNLA LGAKPR L PG S
Sbjct: 59 MADRSAAERACKDPNPIIDGRKANVNLAYLGAKPR-ILQPGFS 100
>gi|344239456|gb|EGV95559.1| RNA-binding protein 24 [Cricetulus griseus]
Length = 251
Score = 71.6 bits (174), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 34/43 (79%), Positives = 36/43 (83%), Gaps = 1/43 (2%)
Query: 1 MGDRPAAERACKDPNPIIDGRKANVNLAILGAKPRGTLPPGIS 43
M DR AAERACKDPNPIIDGRKANVNLA LGAKPR + PG +
Sbjct: 74 MADRAAAERACKDPNPIIDGRKANVNLAYLGAKPR-IMQPGFA 115
>gi|157279879|ref|NP_001098455.1| RNA-binding protein 24 [Bos taurus]
gi|151554292|gb|AAI49346.1| RBM24 protein [Bos taurus]
gi|296474026|tpg|DAA16141.1| TPA: RNA binding motif protein 24 [Bos taurus]
Length = 236
Score = 71.2 bits (173), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 34/43 (79%), Positives = 36/43 (83%), Gaps = 1/43 (2%)
Query: 1 MGDRPAAERACKDPNPIIDGRKANVNLAILGAKPRGTLPPGIS 43
M DR AAERACKDPNPIIDGRKANVNLA LGAKPR + PG +
Sbjct: 59 MADRAAAERACKDPNPIIDGRKANVNLAYLGAKPR-IMQPGFA 100
>gi|149639860|ref|XP_001510485.1| PREDICTED: RNA-binding protein 38-like [Ornithorhynchus anatinus]
Length = 209
Score = 71.2 bits (173), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 32/35 (91%), Positives = 32/35 (91%)
Query: 1 MGDRPAAERACKDPNPIIDGRKANVNLAILGAKPR 35
M DR AAERACKDPNPIIDGRKANVNLA LGAKPR
Sbjct: 59 MADRAAAERACKDPNPIIDGRKANVNLAYLGAKPR 93
>gi|82233813|sp|Q5ZJX4.1|RBM38_CHICK RecName: Full=RNA-binding protein 38; AltName: Full=RNA-binding
motif protein 38
gi|53133180|emb|CAG31969.1| hypothetical protein RCJMB04_14l15 [Gallus gallus]
Length = 215
Score = 71.2 bits (173), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 32/35 (91%), Positives = 32/35 (91%)
Query: 1 MGDRPAAERACKDPNPIIDGRKANVNLAILGAKPR 35
M DR AAERACKDPNPIIDGRKANVNLA LGAKPR
Sbjct: 59 MADRAAAERACKDPNPIIDGRKANVNLAYLGAKPR 93
>gi|47222887|emb|CAF96554.1| unnamed protein product [Tetraodon nigroviridis]
Length = 224
Score = 71.2 bits (173), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 36/43 (83%), Positives = 37/43 (86%), Gaps = 1/43 (2%)
Query: 1 MGDRPAAERACKDPNPIIDGRKANVNLAILGAKPRGTLPPGIS 43
M DR AAERACKDPNPIIDGRKANVNLA LGAKPR +L GIS
Sbjct: 55 MTDRGAAERACKDPNPIIDGRKANVNLAYLGAKPR-SLQTGIS 96
>gi|126322255|ref|XP_001376382.1| PREDICTED: RNA-binding protein 24-like [Monodelphis domestica]
gi|395511913|ref|XP_003760195.1| PREDICTED: RNA-binding protein 24 [Sarcophilus harrisii]
Length = 235
Score = 71.2 bits (173), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 34/43 (79%), Positives = 36/43 (83%), Gaps = 1/43 (2%)
Query: 1 MGDRPAAERACKDPNPIIDGRKANVNLAILGAKPRGTLPPGIS 43
M DR AAERACKDPNPIIDGRKANVNLA LGAKPR + PG +
Sbjct: 59 MADRAAAERACKDPNPIIDGRKANVNLAYLGAKPR-IMQPGFA 100
>gi|395830517|ref|XP_003788370.1| PREDICTED: RNA-binding protein 24 [Otolemur garnettii]
Length = 236
Score = 71.2 bits (173), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 34/43 (79%), Positives = 36/43 (83%), Gaps = 1/43 (2%)
Query: 1 MGDRPAAERACKDPNPIIDGRKANVNLAILGAKPRGTLPPGIS 43
M DR AAERACKDPNPIIDGRKANVNLA LGAKPR + PG +
Sbjct: 59 MADRAAAERACKDPNPIIDGRKANVNLAYLGAKPR-IMQPGFA 100
>gi|395506793|ref|XP_003757714.1| PREDICTED: RNA-binding protein 38 [Sarcophilus harrisii]
Length = 157
Score = 71.2 bits (173), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 32/36 (88%), Positives = 32/36 (88%)
Query: 1 MGDRPAAERACKDPNPIIDGRKANVNLAILGAKPRG 36
M DR AAERACKDPNPIIDGRKANVNLA LGAKPR
Sbjct: 1 MADRAAAERACKDPNPIIDGRKANVNLAYLGAKPRS 36
>gi|124487277|ref|NP_001074894.1| RNA-binding protein 24 [Mus musculus]
gi|354467200|ref|XP_003496058.1| PREDICTED: RNA-binding protein 24-like [Cricetulus griseus]
gi|380877121|sp|D3Z4I3.1|RBM24_MOUSE RecName: Full=RNA-binding protein 24; AltName: Full=RNA-binding
motif protein 24
Length = 236
Score = 71.2 bits (173), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 34/43 (79%), Positives = 36/43 (83%), Gaps = 1/43 (2%)
Query: 1 MGDRPAAERACKDPNPIIDGRKANVNLAILGAKPRGTLPPGIS 43
M DR AAERACKDPNPIIDGRKANVNLA LGAKPR + PG +
Sbjct: 59 MADRAAAERACKDPNPIIDGRKANVNLAYLGAKPR-IMQPGFA 100
>gi|327270050|ref|XP_003219804.1| PREDICTED: RNA-binding protein 24-like [Anolis carolinensis]
Length = 230
Score = 71.2 bits (173), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 34/43 (79%), Positives = 36/43 (83%), Gaps = 1/43 (2%)
Query: 1 MGDRPAAERACKDPNPIIDGRKANVNLAILGAKPRGTLPPGIS 43
M DR AAERACKDPNPIIDGRKANVNLA LGAKPR + PG +
Sbjct: 59 MADRAAAERACKDPNPIIDGRKANVNLAYLGAKPR-IMQPGFA 100
>gi|45360685|ref|NP_989016.1| RNA-binding protein 24 [Xenopus (Silurana) tropicalis]
gi|82237576|sp|Q6P8A7.1|RBM24_XENTR RecName: Full=RNA-binding protein 24; AltName: Full=RNA-binding
motif protein 24
gi|38174185|gb|AAH61322.1| RNA binding motif protein 24 [Xenopus (Silurana) tropicalis]
Length = 226
Score = 71.2 bits (173), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 34/43 (79%), Positives = 36/43 (83%), Gaps = 1/43 (2%)
Query: 1 MGDRPAAERACKDPNPIIDGRKANVNLAILGAKPRGTLPPGIS 43
M DR AAERACKDPNPIIDGRKANVNLA LGAKPR + PG +
Sbjct: 59 MADRAAAERACKDPNPIIDGRKANVNLAYLGAKPR-IMQPGFA 100
>gi|300797848|ref|NP_001178029.1| RNA-binding protein 24 [Rattus norvegicus]
Length = 236
Score = 71.2 bits (173), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 34/43 (79%), Positives = 36/43 (83%), Gaps = 1/43 (2%)
Query: 1 MGDRPAAERACKDPNPIIDGRKANVNLAILGAKPRGTLPPGIS 43
M DR AAERACKDPNPIIDGRKANVNLA LGAKPR + PG +
Sbjct: 59 MADRAAAERACKDPNPIIDGRKANVNLAYLGAKPR-IMQPGFA 100
>gi|397505333|ref|XP_003823221.1| PREDICTED: LOW QUALITY PROTEIN: RNA-binding protein 24 [Pan
paniscus]
Length = 236
Score = 71.2 bits (173), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 34/43 (79%), Positives = 36/43 (83%), Gaps = 1/43 (2%)
Query: 1 MGDRPAAERACKDPNPIIDGRKANVNLAILGAKPRGTLPPGIS 43
M DR AAERACKDPNPIIDGRKANVNLA LGAKPR + PG +
Sbjct: 59 MADRAAAERACKDPNPIIDGRKANVNLAYLGAKPR-IMQPGFA 100
>gi|348566023|ref|XP_003468802.1| PREDICTED: RNA-binding protein 24-like [Cavia porcellus]
Length = 236
Score = 71.2 bits (173), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 34/43 (79%), Positives = 36/43 (83%), Gaps = 1/43 (2%)
Query: 1 MGDRPAAERACKDPNPIIDGRKANVNLAILGAKPRGTLPPGIS 43
M DR AAERACKDPNPIIDGRKANVNLA LGAKPR + PG +
Sbjct: 59 MADRAAAERACKDPNPIIDGRKANVNLAYLGAKPR-IMQPGFA 100
>gi|221139802|ref|NP_001137414.1| RNA-binding protein 24 isoform 1 [Homo sapiens]
gi|297677216|ref|XP_002816502.1| PREDICTED: RNA-binding protein 24 [Pongo abelii]
gi|332822992|ref|XP_001175216.2| PREDICTED: RNA-binding protein 24 isoform 1 [Pan troglodytes]
gi|402865906|ref|XP_003897142.1| PREDICTED: RNA-binding protein 24 [Papio anubis]
gi|403270855|ref|XP_003927374.1| PREDICTED: RNA-binding protein 24 [Saimiri boliviensis boliviensis]
gi|74761312|sp|Q9BX46.1|RBM24_HUMAN RecName: Full=RNA-binding protein 24; AltName: Full=RNA-binding
motif protein 24; AltName: Full=RNA-binding
region-containing protein 6
gi|119575782|gb|EAW55378.1| RNA binding motif protein 24, isoform CRA_a [Homo sapiens]
gi|158259565|dbj|BAF85741.1| unnamed protein product [Homo sapiens]
gi|164691129|dbj|BAF98747.1| unnamed protein product [Homo sapiens]
gi|261861082|dbj|BAI47063.1| RNA binding motif protein 24 [synthetic construct]
gi|410210220|gb|JAA02329.1| RNA binding motif protein 24 [Pan troglodytes]
gi|410346986|gb|JAA40725.1| RNA binding motif protein 24 [Pan troglodytes]
gi|431913274|gb|ELK14952.1| RNA-binding protein 24 [Pteropus alecto]
Length = 236
Score = 71.2 bits (173), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 34/43 (79%), Positives = 36/43 (83%), Gaps = 1/43 (2%)
Query: 1 MGDRPAAERACKDPNPIIDGRKANVNLAILGAKPRGTLPPGIS 43
M DR AAERACKDPNPIIDGRKANVNLA LGAKPR + PG +
Sbjct: 59 MADRAAAERACKDPNPIIDGRKANVNLAYLGAKPR-IMQPGFA 100
>gi|215275623|sp|Q7T3I7.2|RBM38_XENLA RecName: Full=RNA-binding protein 38; AltName: Full=RNA-binding
motif protein 38; AltName: Full=RNA-binding protein
XSeb4R
gi|49117866|gb|AAH72792.1| LOC398603 protein [Xenopus laevis]
Length = 214
Score = 71.2 bits (173), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 32/35 (91%), Positives = 32/35 (91%)
Query: 1 MGDRPAAERACKDPNPIIDGRKANVNLAILGAKPR 35
M DR AAERACKDPNPIIDGRKANVNLA LGAKPR
Sbjct: 59 MSDRAAAERACKDPNPIIDGRKANVNLAYLGAKPR 93
>gi|194038046|ref|XP_001925482.1| PREDICTED: RNA-binding protein 24-like [Sus scrofa]
Length = 236
Score = 71.2 bits (173), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 34/43 (79%), Positives = 36/43 (83%), Gaps = 1/43 (2%)
Query: 1 MGDRPAAERACKDPNPIIDGRKANVNLAILGAKPRGTLPPGIS 43
M DR AAERACKDPNPIIDGRKANVNLA LGAKPR + PG +
Sbjct: 59 MADRAAAERACKDPNPIIDGRKANVNLAYLGAKPR-IMQPGFA 100
>gi|348510343|ref|XP_003442705.1| PREDICTED: RNA-binding protein 38-like [Oreochromis niloticus]
Length = 244
Score = 71.2 bits (173), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 36/43 (83%), Positives = 37/43 (86%), Gaps = 1/43 (2%)
Query: 1 MGDRPAAERACKDPNPIIDGRKANVNLAILGAKPRGTLPPGIS 43
M DR AAERACKDPNPIIDGRKANVNLA LGAKPR +L GIS
Sbjct: 74 MTDRGAAERACKDPNPIIDGRKANVNLAYLGAKPR-SLQTGIS 115
>gi|410920095|ref|XP_003973519.1| PREDICTED: RNA-binding protein 38-like [Takifugu rubripes]
Length = 245
Score = 71.2 bits (173), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 37/43 (86%), Gaps = 1/43 (2%)
Query: 1 MGDRPAAERACKDPNPIIDGRKANVNLAILGAKPRGTLPPGIS 43
M DR AAERACKDPNPIIDGRKANVNLA LGAKPR ++ GIS
Sbjct: 74 MTDRGAAERACKDPNPIIDGRKANVNLAYLGAKPR-SMQTGIS 115
>gi|148233159|ref|NP_001082613.1| RNA-binding protein 38 [Xenopus laevis]
gi|31087962|gb|AAP42281.1| RRM-type RNA-binding protein XSEB4R [Xenopus laevis]
Length = 214
Score = 71.2 bits (173), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 32/35 (91%), Positives = 32/35 (91%)
Query: 1 MGDRPAAERACKDPNPIIDGRKANVNLAILGAKPR 35
M DR AAERACKDPNPIIDGRKANVNLA LGAKPR
Sbjct: 59 MSDRAAAERACKDPNPIIDGRKANVNLAYLGAKPR 93
>gi|297707415|ref|XP_002830502.1| PREDICTED: RNA-binding protein 38 [Pongo abelii]
Length = 158
Score = 70.9 bits (172), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 32/36 (88%), Positives = 32/36 (88%)
Query: 1 MGDRPAAERACKDPNPIIDGRKANVNLAILGAKPRG 36
M DR AAERACKDPNPIIDGRKANVNLA LGAKPR
Sbjct: 1 MADRAAAERACKDPNPIIDGRKANVNLAYLGAKPRS 36
>gi|55742352|ref|NP_001006916.1| RNA-binding protein 38 [Xenopus (Silurana) tropicalis]
gi|82236015|sp|Q6DIV4.1|RBM38_XENTR RecName: Full=RNA-binding protein 38; AltName: Full=RNA-binding
motif protein 38
gi|49523027|gb|AAH75431.1| RNA binding motif protein 38 [Xenopus (Silurana) tropicalis]
gi|89271379|emb|CAJ82907.1| RNA-binding region (RNP1, RRM) containing 1 [Xenopus (Silurana)
tropicalis]
Length = 219
Score = 70.9 bits (172), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 32/35 (91%), Positives = 32/35 (91%)
Query: 1 MGDRPAAERACKDPNPIIDGRKANVNLAILGAKPR 35
M DR AAERACKDPNPIIDGRKANVNLA LGAKPR
Sbjct: 59 MSDRAAAERACKDPNPIIDGRKANVNLAYLGAKPR 93
>gi|8895698|gb|AAF81070.1|AF223427_1 RRM-containing protein SEB-4 [Xenopus laevis]
Length = 227
Score = 70.9 bits (172), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 34/43 (79%), Positives = 36/43 (83%), Gaps = 1/43 (2%)
Query: 1 MGDRPAAERACKDPNPIIDGRKANVNLAILGAKPRGTLPPGIS 43
M DR AAERACKDPNPIIDGRKANVNLA LGAKPR + PG +
Sbjct: 59 MADRAAAERACKDPNPIIDGRKANVNLAYLGAKPR-IMQPGFA 100
>gi|147907395|ref|NP_001080995.1| RNA-binding protein 24-A [Xenopus laevis]
gi|82236599|sp|Q6GQD3.1|RB24A_XENLA RecName: Full=RNA-binding protein 24-A; AltName: Full=RNA-binding
motif protein 24-A; AltName: Full=RRM domain-containing
protein SEB-4; Short=SEB-4; AltName: Full=Xseb-4
gi|49114954|gb|AAH72812.1| Seb4-A-prov protein [Xenopus laevis]
Length = 225
Score = 70.9 bits (172), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 34/43 (79%), Positives = 36/43 (83%), Gaps = 1/43 (2%)
Query: 1 MGDRPAAERACKDPNPIIDGRKANVNLAILGAKPRGTLPPGIS 43
M DR AAERACKDPNPIIDGRKANVNLA LGAKPR + PG +
Sbjct: 59 MADRAAAERACKDPNPIIDGRKANVNLAYLGAKPR-IMQPGFA 100
>gi|397469116|ref|XP_003806210.1| PREDICTED: RNA-binding protein 38 [Pan paniscus]
gi|426392240|ref|XP_004062464.1| PREDICTED: RNA-binding protein 38 [Gorilla gorilla gorilla]
Length = 158
Score = 70.9 bits (172), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 32/36 (88%), Positives = 32/36 (88%)
Query: 1 MGDRPAAERACKDPNPIIDGRKANVNLAILGAKPRG 36
M DR AAERACKDPNPIIDGRKANVNLA LGAKPR
Sbjct: 1 MADRAAAERACKDPNPIIDGRKANVNLAYLGAKPRS 36
>gi|441623518|ref|XP_003263507.2| PREDICTED: RNA-binding protein 24, partial [Nomascus leucogenys]
Length = 196
Score = 70.9 bits (172), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 34/43 (79%), Positives = 36/43 (83%), Gaps = 1/43 (2%)
Query: 1 MGDRPAAERACKDPNPIIDGRKANVNLAILGAKPRGTLPPGIS 43
M DR AAERACKDPNPIIDGRKANVNLA LGAKPR + PG +
Sbjct: 59 MADRAAAERACKDPNPIIDGRKANVNLAYLGAKPR-IMQPGFA 100
>gi|344289554|ref|XP_003416507.1| PREDICTED: RNA-binding protein 24-like [Loxodonta africana]
Length = 237
Score = 70.9 bits (172), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 34/43 (79%), Positives = 36/43 (83%), Gaps = 1/43 (2%)
Query: 1 MGDRPAAERACKDPNPIIDGRKANVNLAILGAKPRGTLPPGIS 43
M DR AAERACKDPNPIIDGRKANVNLA LGAKPR + PG +
Sbjct: 59 MADRAAAERACKDPNPIIDGRKANVNLAYLGAKPR-IMQPGFA 100
>gi|126302793|ref|XP_001368885.1| PREDICTED: RNA-binding protein 38-like [Monodelphis domestica]
Length = 234
Score = 70.9 bits (172), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 32/35 (91%), Positives = 32/35 (91%)
Query: 1 MGDRPAAERACKDPNPIIDGRKANVNLAILGAKPR 35
M DR AAERACKDPNPIIDGRKANVNLA LGAKPR
Sbjct: 78 MADRAAAERACKDPNPIIDGRKANVNLAYLGAKPR 112
>gi|224045660|ref|XP_002188575.1| PREDICTED: RNA-binding protein 24 isoform 1 [Taeniopygia guttata]
Length = 226
Score = 70.9 bits (172), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 34/43 (79%), Positives = 36/43 (83%), Gaps = 1/43 (2%)
Query: 1 MGDRPAAERACKDPNPIIDGRKANVNLAILGAKPRGTLPPGIS 43
M DR AAERACKDPNPIIDGRKANVNLA LGAKPR + PG +
Sbjct: 59 MADRAAAERACKDPNPIIDGRKANVNLAYLGAKPR-IMQPGFA 100
>gi|344296535|ref|XP_003419962.1| PREDICTED: RNA-binding protein 38-like [Loxodonta africana]
Length = 158
Score = 70.9 bits (172), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 37/43 (86%), Gaps = 1/43 (2%)
Query: 1 MGDRPAAERACKDPNPIIDGRKANVNLAILGAKPRGTLPPGIS 43
M DR AAERACKDPNPIIDGRKANVNLA LGAKPR +L PG +
Sbjct: 1 MADRGAAERACKDPNPIIDGRKANVNLAYLGAKPR-SLQPGFA 42
>gi|45239008|gb|AAS55633.1| unknown [Homo sapiens]
Length = 236
Score = 70.9 bits (172), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 32/35 (91%), Positives = 32/35 (91%)
Query: 1 MGDRPAAERACKDPNPIIDGRKANVNLAILGAKPR 35
M DR AAERACKDPNPIIDGRKANVNLA LGAKPR
Sbjct: 59 MADRAAAERACKDPNPIIDGRKANVNLAYLGAKPR 93
>gi|449493337|ref|XP_004175378.1| PREDICTED: RNA-binding protein 24 isoform 2 [Taeniopygia guttata]
Length = 184
Score = 70.9 bits (172), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 34/43 (79%), Positives = 36/43 (83%), Gaps = 1/43 (2%)
Query: 1 MGDRPAAERACKDPNPIIDGRKANVNLAILGAKPRGTLPPGIS 43
M DR AAERACKDPNPIIDGRKANVNLA LGAKPR + PG +
Sbjct: 59 MADRAAAERACKDPNPIIDGRKANVNLAYLGAKPR-IMQPGFA 100
>gi|124021001|sp|Q5ZMA3.2|RBM24_CHICK RecName: Full=RNA-binding protein 24; AltName: Full=RNA-binding
motif protein 24
Length = 225
Score = 70.9 bits (172), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 34/43 (79%), Positives = 36/43 (83%), Gaps = 1/43 (2%)
Query: 1 MGDRPAAERACKDPNPIIDGRKANVNLAILGAKPRGTLPPGIS 43
M DR AAERACKDPNPIIDGRKANVNLA LGAKPR + PG +
Sbjct: 59 MADRAAAERACKDPNPIIDGRKANVNLAYLGAKPR-IMQPGFA 100
>gi|403282459|ref|XP_003932666.1| PREDICTED: RNA-binding protein 38 [Saimiri boliviensis
boliviensis]
Length = 216
Score = 70.9 bits (172), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 32/35 (91%), Positives = 32/35 (91%)
Query: 1 MGDRPAAERACKDPNPIIDGRKANVNLAILGAKPR 35
M DR AAERACKDPNPIIDGRKANVNLA LGAKPR
Sbjct: 59 MADRAAAERACKDPNPIIDGRKANVNLAYLGAKPR 93
>gi|326932128|ref|XP_003212172.1| PREDICTED: RNA-binding protein 38-like [Meleagris gallopavo]
gi|363741694|ref|XP_003642541.1| PREDICTED: RNA binding motif protein 38 [Gallus gallus]
Length = 157
Score = 70.9 bits (172), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 32/36 (88%), Positives = 32/36 (88%)
Query: 1 MGDRPAAERACKDPNPIIDGRKANVNLAILGAKPRG 36
M DR AAERACKDPNPIIDGRKANVNLA LGAKPR
Sbjct: 1 MADRAAAERACKDPNPIIDGRKANVNLAYLGAKPRS 36
>gi|19851930|gb|AAL99924.1|AF432218_1 CLL-associated antigen KW-5 [Homo sapiens]
gi|17511712|gb|AAH18711.1| RBM38 protein [Homo sapiens]
gi|119595926|gb|EAW75520.1| RNA-binding region (RNP1, RRM) containing 1, isoform CRA_a [Homo
sapiens]
gi|119595927|gb|EAW75521.1| RNA-binding region (RNP1, RRM) containing 1, isoform CRA_a [Homo
sapiens]
gi|123982260|gb|ABM82920.1| RNA binding motif protein 38 [synthetic construct]
gi|123997017|gb|ABM86110.1| RNA binding motif protein 38 [synthetic construct]
Length = 216
Score = 70.9 bits (172), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 32/35 (91%), Positives = 32/35 (91%)
Query: 1 MGDRPAAERACKDPNPIIDGRKANVNLAILGAKPR 35
M DR AAERACKDPNPIIDGRKANVNLA LGAKPR
Sbjct: 59 MADRAAAERACKDPNPIIDGRKANVNLAYLGAKPR 93
>gi|449486302|ref|XP_002195762.2| PREDICTED: RNA-binding protein 38 [Taeniopygia guttata]
Length = 155
Score = 70.9 bits (172), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 32/35 (91%), Positives = 32/35 (91%)
Query: 1 MGDRPAAERACKDPNPIIDGRKANVNLAILGAKPR 35
M DR AAERACKDPNPIIDGRKANVNLA LGAKPR
Sbjct: 1 MADRAAAERACKDPNPIIDGRKANVNLAYLGAKPR 35
>gi|449274255|gb|EMC83538.1| RNA-binding protein 38, partial [Columba livia]
Length = 171
Score = 70.9 bits (172), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 32/35 (91%), Positives = 32/35 (91%)
Query: 1 MGDRPAAERACKDPNPIIDGRKANVNLAILGAKPR 35
M DR AAERACKDPNPIIDGRKANVNLA LGAKPR
Sbjct: 15 MADRAAAERACKDPNPIIDGRKANVNLAYLGAKPR 49
>gi|444518299|gb|ELV12076.1| Adenylyl cyclase-associated protein 2 [Tupaia chinensis]
Length = 609
Score = 70.9 bits (172), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 34/43 (79%), Positives = 36/43 (83%), Gaps = 1/43 (2%)
Query: 1 MGDRPAAERACKDPNPIIDGRKANVNLAILGAKPRGTLPPGIS 43
M DR AAERACKDPNPIIDGRKANVNLA LGAKPR + PG +
Sbjct: 59 MADRAAAERACKDPNPIIDGRKANVNLAYLGAKPR-IMQPGFA 100
>gi|410958455|ref|XP_003985834.1| PREDICTED: RNA-binding protein 24 [Felis catus]
Length = 284
Score = 70.9 bits (172), Expect = 1e-10, Method: Composition-based stats.
Identities = 34/43 (79%), Positives = 36/43 (83%), Gaps = 1/43 (2%)
Query: 1 MGDRPAAERACKDPNPIIDGRKANVNLAILGAKPRGTLPPGIS 43
M DR AAERACKDPNPIIDGRKANVNLA LGAKPR + PG +
Sbjct: 107 MADRAAAERACKDPNPIIDGRKANVNLAYLGAKPR-IMQPGFA 148
>gi|21754197|dbj|BAC04474.1| unnamed protein product [Homo sapiens]
Length = 211
Score = 70.9 bits (172), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 34/43 (79%), Positives = 36/43 (83%), Gaps = 1/43 (2%)
Query: 1 MGDRPAAERACKDPNPIIDGRKANVNLAILGAKPRGTLPPGIS 43
M DR AAERACKDPNPIIDGRKANVNLA LGAKPR + PG +
Sbjct: 59 MADRAAAERACKDPNPIIDGRKANVNLAYLGAKPR-IMQPGFA 100
>gi|432859465|ref|XP_004069121.1| PREDICTED: RNA-binding protein 38-like [Oryzias latipes]
Length = 131
Score = 70.5 bits (171), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 37/43 (86%), Gaps = 1/43 (2%)
Query: 1 MGDRPAAERACKDPNPIIDGRKANVNLAILGAKPRGTLPPGIS 43
M DR AAERACKDPNPIIDGRKANVNLA LGAKPR ++ GIS
Sbjct: 74 MTDRGAAERACKDPNPIIDGRKANVNLAYLGAKPR-SIQTGIS 115
>gi|149632517|ref|XP_001508012.1| PREDICTED: RNA-binding protein 24-like [Ornithorhynchus anatinus]
Length = 267
Score = 70.5 bits (171), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 34/43 (79%), Positives = 36/43 (83%), Gaps = 1/43 (2%)
Query: 1 MGDRPAAERACKDPNPIIDGRKANVNLAILGAKPRGTLPPGIS 43
M DR AAERACKDPNPIIDGRKANVNLA LGAKPR + PG +
Sbjct: 96 MADRAAAERACKDPNPIIDGRKANVNLAYLGAKPR-IMQPGFA 137
>gi|34577107|ref|NP_059965.2| RNA-binding protein 38 isoform a [Homo sapiens]
gi|215273895|sp|Q9H0Z9.2|RBM38_HUMAN RecName: Full=RNA-binding protein 38; AltName: Full=CLL-associated
antigen KW-5; AltName: Full=HSRNASEB; AltName:
Full=RNA-binding motif protein 38; AltName:
Full=RNA-binding region-containing protein 1; AltName:
Full=ssDNA-binding protein SEB4
gi|410328979|gb|JAA33436.1| RNA binding motif protein 38 [Pan troglodytes]
Length = 239
Score = 70.5 bits (171), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 37/58 (63%), Positives = 38/58 (65%), Gaps = 7/58 (12%)
Query: 1 MGDRPAAERACKDPNPIIDGRKANVNLAILGAKPRGTLPPGISHQRSLALGSNDFEYT 58
M DR AAERACKDPNPIIDGRKANVNLA LGAKPR S Q A+G T
Sbjct: 82 MADRAAAERACKDPNPIIDGRKANVNLAYLGAKPR-------SLQTGFAIGVQQLHPT 132
>gi|383872991|ref|NP_001244400.1| RNA-binding protein 38 [Macaca mulatta]
gi|402882171|ref|XP_003904624.1| PREDICTED: RNA-binding protein 38 [Papio anubis]
gi|380814450|gb|AFE79099.1| RNA-binding protein 38 isoform a [Macaca mulatta]
gi|383419781|gb|AFH33104.1| RNA-binding protein 38 isoform a [Macaca mulatta]
gi|384948092|gb|AFI37651.1| RNA-binding protein 38 isoform a [Macaca mulatta]
Length = 237
Score = 70.5 bits (171), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 32/35 (91%), Positives = 32/35 (91%)
Query: 1 MGDRPAAERACKDPNPIIDGRKANVNLAILGAKPR 35
M DR AAERACKDPNPIIDGRKANVNLA LGAKPR
Sbjct: 82 MADRAAAERACKDPNPIIDGRKANVNLAYLGAKPR 116
>gi|47086303|ref|NP_998030.1| RNA-binding protein 24 [Danio rerio]
gi|82239979|sp|Q76LC6.1|RBM24_DANRE RecName: Full=RNA-binding protein 24; AltName: Full=RNA-binding
motif protein 24; AltName: Full=RNA-binding protein
SEB-4
gi|45126691|dbj|BAD12194.1| RNA binding protein [Danio rerio]
gi|190337254|gb|AAI63034.1| RNA binding motif protein 24 [Danio rerio]
gi|190338707|gb|AAI63027.1| RNA binding motif protein 24 [Danio rerio]
Length = 230
Score = 70.5 bits (171), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 36/43 (83%), Gaps = 1/43 (2%)
Query: 1 MGDRPAAERACKDPNPIIDGRKANVNLAILGAKPRGTLPPGIS 43
M DR AA+RACKDPNPIIDGRKANVNLA LGAKPR + PG +
Sbjct: 59 MADRSAADRACKDPNPIIDGRKANVNLAYLGAKPR-VMQPGFT 100
>gi|395829250|ref|XP_003787773.1| PREDICTED: RNA-binding protein 38 [Otolemur garnettii]
Length = 240
Score = 70.5 bits (171), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 32/35 (91%), Positives = 32/35 (91%)
Query: 1 MGDRPAAERACKDPNPIIDGRKANVNLAILGAKPR 35
M DR AAERACKDPNPIIDGRKANVNLA LGAKPR
Sbjct: 83 MADRAAAERACKDPNPIIDGRKANVNLAYLGAKPR 117
>gi|351697821|gb|EHB00740.1| RNA-binding protein 38 [Heterocephalus glaber]
Length = 210
Score = 70.5 bits (171), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 32/36 (88%), Positives = 32/36 (88%)
Query: 1 MGDRPAAERACKDPNPIIDGRKANVNLAILGAKPRG 36
M DR AAERACKDPNPIIDGRKANVNLA LGAKPR
Sbjct: 1 MADRAAAERACKDPNPIIDGRKANVNLAYLGAKPRS 36
>gi|383419779|gb|AFH33103.1| RNA-binding protein 24 isoform 1 [Macaca mulatta]
Length = 98
Score = 70.1 bits (170), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 32/35 (91%), Positives = 32/35 (91%)
Query: 1 MGDRPAAERACKDPNPIIDGRKANVNLAILGAKPR 35
M DR AAERACKDPNPIIDGRKANVNLA LGAKPR
Sbjct: 59 MADRAAAERACKDPNPIIDGRKANVNLAYLGAKPR 93
>gi|348555754|ref|XP_003463688.1| PREDICTED: RNA-binding protein 38-like [Cavia porcellus]
Length = 239
Score = 70.1 bits (170), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 32/35 (91%), Positives = 32/35 (91%)
Query: 1 MGDRPAAERACKDPNPIIDGRKANVNLAILGAKPR 35
M DR AAERACKDPNPIIDGRKANVNLA LGAKPR
Sbjct: 82 MADRAAAERACKDPNPIIDGRKANVNLAYLGAKPR 116
>gi|296200795|ref|XP_002747755.1| PREDICTED: RNA-binding protein 38-like [Callithrix jacchus]
Length = 239
Score = 70.1 bits (170), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 32/35 (91%), Positives = 32/35 (91%)
Query: 1 MGDRPAAERACKDPNPIIDGRKANVNLAILGAKPR 35
M DR AAERACKDPNPIIDGRKANVNLA LGAKPR
Sbjct: 82 MADRAAAERACKDPNPIIDGRKANVNLAYLGAKPR 116
>gi|23308561|ref|NP_694565.1| RNA-binding protein 24 isoform 2 [Homo sapiens]
gi|16550108|dbj|BAB70914.1| unnamed protein product [Homo sapiens]
gi|85396884|gb|AAI04809.1| RNA binding motif protein 24 [Homo sapiens]
gi|85396886|gb|AAI04811.1| RNA binding motif protein 24 [Homo sapiens]
gi|119575783|gb|EAW55379.1| RNA binding motif protein 24, isoform CRA_b [Homo sapiens]
Length = 191
Score = 70.1 bits (170), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 34/43 (79%), Positives = 36/43 (83%), Gaps = 1/43 (2%)
Query: 1 MGDRPAAERACKDPNPIIDGRKANVNLAILGAKPRGTLPPGIS 43
M DR AAERACKDPNPIIDGRKANVNLA LGAKPR + PG +
Sbjct: 14 MADRAAAERACKDPNPIIDGRKANVNLAYLGAKPR-IMQPGFA 55
>gi|159163863|pdb|2CQD|A Chain A, Solution Structure Of The Rna Recognition Motif In Rna-
Binding Region Containing Protein 1
Length = 116
Score = 70.1 bits (170), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/35 (91%), Positives = 32/35 (91%)
Query: 1 MGDRPAAERACKDPNPIIDGRKANVNLAILGAKPR 35
M DR AAERACKDPNPIIDGRKANVNLA LGAKPR
Sbjct: 66 MADRAAAERACKDPNPIIDGRKANVNLAYLGAKPR 100
>gi|432883399|ref|XP_004074265.1| PREDICTED: RNA-binding protein 24-like [Oryzias latipes]
Length = 232
Score = 70.1 bits (170), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 36/43 (83%), Gaps = 1/43 (2%)
Query: 1 MGDRPAAERACKDPNPIIDGRKANVNLAILGAKPRGTLPPGIS 43
M DR AA+RACKDPNPIIDGRKANVNLA LGAKPR + PG +
Sbjct: 59 MADRSAADRACKDPNPIIDGRKANVNLAYLGAKPR-VMQPGFT 100
>gi|221139804|ref|NP_001137413.1| RNA-binding protein 24 isoform 3 [Homo sapiens]
gi|332822994|ref|XP_003311078.1| PREDICTED: RNA-binding protein 24 isoform 2 [Pan troglodytes]
gi|432102158|gb|ELK29966.1| RNA-binding protein 24 [Myotis davidii]
Length = 178
Score = 70.1 bits (170), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 34/43 (79%), Positives = 36/43 (83%), Gaps = 1/43 (2%)
Query: 1 MGDRPAAERACKDPNPIIDGRKANVNLAILGAKPRGTLPPGIS 43
M DR AAERACKDPNPIIDGRKANVNLA LGAKPR + PG +
Sbjct: 1 MADRAAAERACKDPNPIIDGRKANVNLAYLGAKPR-IMQPGFA 42
>gi|359323818|ref|XP_853055.3| PREDICTED: uncharacterized protein LOC610452 [Canis lupus
familiaris]
Length = 271
Score = 70.1 bits (170), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 34/43 (79%), Positives = 36/43 (83%), Gaps = 1/43 (2%)
Query: 1 MGDRPAAERACKDPNPIIDGRKANVNLAILGAKPRGTLPPGIS 43
M DR AAERACKDPNPIIDGRKANVNLA LGAKPR + PG +
Sbjct: 59 MADRAAAERACKDPNPIIDGRKANVNLAYLGAKPR-IMQPGFA 100
>gi|410910980|ref|XP_003968968.1| PREDICTED: RNA-binding protein 24-like [Takifugu rubripes]
Length = 232
Score = 69.7 bits (169), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 36/43 (83%), Gaps = 1/43 (2%)
Query: 1 MGDRPAAERACKDPNPIIDGRKANVNLAILGAKPRGTLPPGIS 43
M DR AA+RACKDPNPIIDGRKANVNLA LGAKPR + PG +
Sbjct: 59 MADRSAADRACKDPNPIIDGRKANVNLAYLGAKPR-VMQPGFT 100
>gi|380806383|gb|AFE75067.1| RNA-binding protein 24 isoform 1, partial [Macaca mulatta]
Length = 70
Score = 69.7 bits (169), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/35 (91%), Positives = 32/35 (91%)
Query: 1 MGDRPAAERACKDPNPIIDGRKANVNLAILGAKPR 35
M DR AAERACKDPNPIIDGRKANVNLA LGAKPR
Sbjct: 34 MADRAAAERACKDPNPIIDGRKANVNLAFLGAKPR 68
>gi|397481117|ref|XP_003811802.1| PREDICTED: RNA-binding protein 38-like [Pan paniscus]
Length = 282
Score = 69.7 bits (169), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/35 (91%), Positives = 32/35 (91%)
Query: 1 MGDRPAAERACKDPNPIIDGRKANVNLAILGAKPR 35
M DR AAERACKDPNPIIDGRKANVNLA LGAKPR
Sbjct: 125 MADRAAAERACKDPNPIIDGRKANVNLAYLGAKPR 159
>gi|91092160|ref|XP_967690.1| PREDICTED: similar to RNA binding region containing protein 1
[Tribolium castaneum]
gi|270014448|gb|EFA10896.1| hypothetical protein TcasGA2_TC001720 [Tribolium castaneum]
Length = 318
Score = 69.7 bits (169), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/45 (71%), Positives = 36/45 (80%)
Query: 1 MGDRPAAERACKDPNPIIDGRKANVNLAILGAKPRGTLPPGISHQ 45
MGD+ +++RACKD NPIIDGRKANVNLAILGAKPRG G Q
Sbjct: 137 MGDKSSSDRACKDANPIIDGRKANVNLAILGAKPRGNAQTGFPFQ 181
>gi|338718215|ref|XP_001493447.2| PREDICTED: RNA-binding protein 24-like [Equus caballus]
Length = 190
Score = 69.7 bits (169), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/35 (91%), Positives = 32/35 (91%)
Query: 1 MGDRPAAERACKDPNPIIDGRKANVNLAILGAKPR 35
M DR AAERACKDPNPIIDGRKANVNLA LGAKPR
Sbjct: 13 MADRAAAERACKDPNPIIDGRKANVNLAYLGAKPR 47
>gi|61098037|ref|NP_001012881.1| RNA-binding protein 24 [Gallus gallus]
gi|53127514|emb|CAG31140.1| hypothetical protein RCJMB04_2l21 [Gallus gallus]
Length = 246
Score = 69.3 bits (168), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 34/43 (79%), Positives = 36/43 (83%), Gaps = 1/43 (2%)
Query: 1 MGDRPAAERACKDPNPIIDGRKANVNLAILGAKPRGTLPPGIS 43
M DR AAERACKDPNPIIDGRKANVNLA LGAKPR + PG +
Sbjct: 59 MADRAAAERACKDPNPIIDGRKANVNLAYLGAKPR-IMQPGFA 100
>gi|213624756|gb|AAI71537.1| RNA binding motif protein 38 [Danio rerio]
Length = 234
Score = 69.3 bits (168), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/38 (84%), Positives = 33/38 (86%)
Query: 1 MGDRPAAERACKDPNPIIDGRKANVNLAILGAKPRGTL 38
M D+ AAERACKDPNPIIDGRKANVNLA LGAKPR L
Sbjct: 73 MMDKSAAERACKDPNPIIDGRKANVNLAYLGAKPRSPL 110
>gi|31580878|dbj|BAC77543.1| hypothetical protein [Danio rerio]
Length = 246
Score = 69.3 bits (168), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 32/38 (84%), Positives = 33/38 (86%)
Query: 1 MGDRPAAERACKDPNPIIDGRKANVNLAILGAKPRGTL 38
M D+ AAERACKDPNPIIDGRKANVNLA LGAKPR L
Sbjct: 73 MMDKSAAERACKDPNPIIDGRKANVNLAYLGAKPRSPL 110
>gi|158534029|ref|NP_001103597.1| RNA-binding protein 38 [Danio rerio]
gi|189230110|ref|NP_001121379.1| uncharacterized protein LOC100158467 [Xenopus (Silurana)
tropicalis]
gi|158253862|gb|AAI54218.1| Rbm38 protein [Danio rerio]
gi|183985579|gb|AAI66071.1| LOC100158467 protein [Xenopus (Silurana) tropicalis]
Length = 234
Score = 69.3 bits (168), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 32/38 (84%), Positives = 33/38 (86%)
Query: 1 MGDRPAAERACKDPNPIIDGRKANVNLAILGAKPRGTL 38
M D+ AAERACKDPNPIIDGRKANVNLA LGAKPR L
Sbjct: 73 MMDKSAAERACKDPNPIIDGRKANVNLAYLGAKPRSPL 110
>gi|51859091|gb|AAH81649.1| Rbm38 protein [Danio rerio]
Length = 221
Score = 69.3 bits (168), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 32/38 (84%), Positives = 33/38 (86%)
Query: 1 MGDRPAAERACKDPNPIIDGRKANVNLAILGAKPRGTL 38
M D+ AAERACKDPNPIIDGRKANVNLA LGAKPR L
Sbjct: 60 MMDKSAAERACKDPNPIIDGRKANVNLAYLGAKPRSPL 97
>gi|317419004|emb|CBN81042.1| RNA-binding protein 24-B [Dicentrarchus labrax]
Length = 244
Score = 69.3 bits (168), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 37/43 (86%), Gaps = 1/43 (2%)
Query: 1 MGDRPAAERACKDPNPIIDGRKANVNLAILGAKPRGTLPPGIS 43
M DR AAERACKDPNPIIDGRKANVNLA LGAKPR ++ GIS
Sbjct: 74 MTDRGAAERACKDPNPIIDGRKANVNLAYLGAKPR-SIQTGIS 115
>gi|47229392|emb|CAF99380.1| unnamed protein product [Tetraodon nigroviridis]
Length = 278
Score = 68.9 bits (167), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 33/46 (71%), Positives = 37/46 (80%), Gaps = 1/46 (2%)
Query: 1 MGDRPAAERACKDPNPIIDGRKANVNLAILGAKPRGTLPPGISHQR 46
M DR AA+RACKDPNPIIDGRKANVNLA LGAKPR + PG ++
Sbjct: 59 MADRSAADRACKDPNPIIDGRKANVNLAYLGAKPR-VMQPGKDQKQ 103
>gi|212648574|ref|NP_001129938.1| Protein SUP-12, isoform b [Caenorhabditis elegans]
gi|351063294|emb|CCD71429.1| Protein SUP-12, isoform b [Caenorhabditis elegans]
Length = 151
Score = 68.9 bits (167), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 31/35 (88%), Positives = 32/35 (91%)
Query: 1 MGDRPAAERACKDPNPIIDGRKANVNLAILGAKPR 35
M DR +AERACKDPNPIIDGRKANVNLA LGAKPR
Sbjct: 83 MKDRASAERACKDPNPIIDGRKANVNLAYLGAKPR 117
>gi|17569937|ref|NP_508674.1| Protein SUP-12, isoform a [Caenorhabditis elegans]
gi|351063290|emb|CCD71425.1| Protein SUP-12, isoform a [Caenorhabditis elegans]
Length = 248
Score = 68.9 bits (167), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 31/35 (88%), Positives = 32/35 (91%)
Query: 1 MGDRPAAERACKDPNPIIDGRKANVNLAILGAKPR 35
M DR +AERACKDPNPIIDGRKANVNLA LGAKPR
Sbjct: 83 MKDRASAERACKDPNPIIDGRKANVNLAYLGAKPR 117
>gi|34577105|ref|NP_906270.1| RNA-binding protein 38 isoform b [Homo sapiens]
Length = 121
Score = 68.9 bits (167), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 32/35 (91%), Positives = 32/35 (91%)
Query: 1 MGDRPAAERACKDPNPIIDGRKANVNLAILGAKPR 35
M DR AAERACKDPNPIIDGRKANVNLA LGAKPR
Sbjct: 82 MADRAAAERACKDPNPIIDGRKANVNLAYLGAKPR 116
>gi|355715642|gb|AES05393.1| RNA binding motif protein 24 [Mustela putorius furo]
Length = 90
Score = 68.9 bits (167), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 34/43 (79%), Positives = 36/43 (83%), Gaps = 1/43 (2%)
Query: 1 MGDRPAAERACKDPNPIIDGRKANVNLAILGAKPRGTLPPGIS 43
M DR AAERACKDPNPIIDGRKANVNLA LGAKPR + PG +
Sbjct: 3 MADRAAAERACKDPNPIIDGRKANVNLAYLGAKPR-IMQPGFA 44
>gi|426351703|ref|XP_004043369.1| PREDICTED: RNA-binding protein 24 [Gorilla gorilla gorilla]
Length = 335
Score = 68.9 bits (167), Expect = 4e-10, Method: Composition-based stats.
Identities = 34/43 (79%), Positives = 36/43 (83%), Gaps = 1/43 (2%)
Query: 1 MGDRPAAERACKDPNPIIDGRKANVNLAILGAKPRGTLPPGIS 43
M DR AAERACKDPNPIIDGRKANVNLA LGAKPR + PG +
Sbjct: 59 MADRAAAERACKDPNPIIDGRKANVNLAYLGAKPR-IMQPGFA 100
>gi|351698924|gb|EHB01843.1| RNA-binding protein 24 [Heterocephalus glaber]
Length = 178
Score = 68.9 bits (167), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 36/43 (83%), Gaps = 1/43 (2%)
Query: 1 MGDRPAAERACKDPNPIIDGRKANVNLAILGAKPRGTLPPGIS 43
M DR +AERACKDPNPIIDGRKANVNLA LGAKPR + PG +
Sbjct: 1 MADRASAERACKDPNPIIDGRKANVNLAYLGAKPR-IMQPGFA 42
>gi|384939270|gb|AFI33240.1| RNA-binding protein 38 isoform a [Macaca mulatta]
Length = 121
Score = 68.6 bits (166), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 32/35 (91%), Positives = 32/35 (91%)
Query: 1 MGDRPAAERACKDPNPIIDGRKANVNLAILGAKPR 35
M DR AAERACKDPNPIIDGRKANVNLA LGAKPR
Sbjct: 82 MADRAAAERACKDPNPIIDGRKANVNLAYLGAKPR 116
>gi|432908495|ref|XP_004077889.1| PREDICTED: RNA-binding protein 24-like isoform 1 [Oryzias latipes]
Length = 237
Score = 68.6 bits (166), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 32/43 (74%), Positives = 36/43 (83%), Gaps = 1/43 (2%)
Query: 1 MGDRPAAERACKDPNPIIDGRKANVNLAILGAKPRGTLPPGIS 43
M DR +A+RACKDPNPIIDGRKANVNLA LGAKPR + PG +
Sbjct: 60 MADRASADRACKDPNPIIDGRKANVNLAYLGAKPR-VIQPGFA 101
>gi|410905335|ref|XP_003966147.1| PREDICTED: RNA-binding protein 24-like [Takifugu rubripes]
Length = 235
Score = 68.6 bits (166), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 32/43 (74%), Positives = 36/43 (83%), Gaps = 1/43 (2%)
Query: 1 MGDRPAAERACKDPNPIIDGRKANVNLAILGAKPRGTLPPGIS 43
M DR +A+RACKDPNPIIDGRKANVNLA LGAKPR + PG +
Sbjct: 60 MADRASADRACKDPNPIIDGRKANVNLAYLGAKPR-VIQPGFA 101
>gi|348533904|ref|XP_003454444.1| PREDICTED: RNA-binding protein 24-like [Oreochromis niloticus]
Length = 235
Score = 68.6 bits (166), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 32/43 (74%), Positives = 36/43 (83%), Gaps = 1/43 (2%)
Query: 1 MGDRPAAERACKDPNPIIDGRKANVNLAILGAKPRGTLPPGIS 43
M DR +A+RACKDPNPIIDGRKANVNLA LGAKPR + PG +
Sbjct: 59 MADRASADRACKDPNPIIDGRKANVNLAYLGAKPR-VIQPGFA 100
>gi|348502595|ref|XP_003438853.1| PREDICTED: RNA-binding protein 38-like [Oreochromis niloticus]
Length = 250
Score = 68.6 bits (166), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 36/51 (70%), Positives = 38/51 (74%), Gaps = 7/51 (13%)
Query: 1 MGDRPAAERACKDPNPIIDGRKANVNLAILGAKPRGTLPPGISHQRSLALG 51
M DR AAERACKD NPIIDGRKANVNLA LGAKPR S Q SL++G
Sbjct: 77 MVDRGAAERACKDANPIIDGRKANVNLAYLGAKPR-------SSQSSLSVG 120
>gi|443696487|gb|ELT97181.1| hypothetical protein CAPTEDRAFT_153918 [Capitella teleta]
Length = 230
Score = 68.6 bits (166), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 31/35 (88%), Positives = 32/35 (91%)
Query: 1 MGDRPAAERACKDPNPIIDGRKANVNLAILGAKPR 35
M DR AAERACK+PNPIIDGRKANVNLA LGAKPR
Sbjct: 62 MTDRTAAERACKEPNPIIDGRKANVNLAYLGAKPR 96
>gi|194224569|ref|XP_001914885.1| PREDICTED: RNA-binding protein 38-like [Equus caballus]
Length = 216
Score = 68.6 bits (166), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 34/43 (79%), Positives = 36/43 (83%), Gaps = 1/43 (2%)
Query: 1 MGDRPAAERACKDPNPIIDGRKANVNLAILGAKPRGTLPPGIS 43
M DR AAERACKDPNP IDGRKANVNLA LGAKPR +L PG +
Sbjct: 59 MADRAAAERACKDPNPNIDGRKANVNLAYLGAKPR-SLQPGFA 100
>gi|387915720|gb|AFK11469.1| RNA-binding protein 38 [Callorhinchus milii]
Length = 232
Score = 68.6 bits (166), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 30/35 (85%), Positives = 32/35 (91%)
Query: 1 MGDRPAAERACKDPNPIIDGRKANVNLAILGAKPR 35
M ++ AAERACKDPNPIIDGRKANVNLA LGAKPR
Sbjct: 77 MAEKSAAERACKDPNPIIDGRKANVNLAYLGAKPR 111
>gi|260804435|ref|XP_002597093.1| hypothetical protein BRAFLDRAFT_215789 [Branchiostoma floridae]
gi|229282356|gb|EEN53105.1| hypothetical protein BRAFLDRAFT_215789 [Branchiostoma floridae]
Length = 113
Score = 68.2 bits (165), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 31/39 (79%), Positives = 33/39 (84%)
Query: 1 MGDRPAAERACKDPNPIIDGRKANVNLAILGAKPRGTLP 39
M R AAE+ACKDPNPIIDGRKANVNLA +GAKPR T P
Sbjct: 56 MATREAAEKACKDPNPIIDGRKANVNLAYIGAKPRNTQP 94
>gi|444730820|gb|ELW71193.1| RNA-binding protein 38 [Tupaia chinensis]
Length = 394
Score = 68.2 bits (165), Expect = 6e-10, Method: Composition-based stats.
Identities = 32/35 (91%), Positives = 32/35 (91%)
Query: 1 MGDRPAAERACKDPNPIIDGRKANVNLAILGAKPR 35
M DR AAERACKDPNPIIDGRKANVNLA LGAKPR
Sbjct: 155 MADRAAAERACKDPNPIIDGRKANVNLAYLGAKPR 189
>gi|407419|emb|CAA53063.1| SEB4D [Homo sapiens]
Length = 229
Score = 68.2 bits (165), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 31/34 (91%), Positives = 31/34 (91%)
Query: 1 MGDRPAAERACKDPNPIIDGRKANVNLAILGAKP 34
M DR AAERACKDPNPIIDGRKANVNLA LGAKP
Sbjct: 72 MADRAAAERACKDPNPIIDGRKANVNLAYLGAKP 105
>gi|481240|pir||S38382 SEB4D protein - human (fragment)
Length = 228
Score = 68.2 bits (165), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 31/34 (91%), Positives = 31/34 (91%)
Query: 1 MGDRPAAERACKDPNPIIDGRKANVNLAILGAKP 34
M DR AAERACKDPNPIIDGRKANVNLA LGAKP
Sbjct: 71 MADRAAAERACKDPNPIIDGRKANVNLAYLGAKP 104
>gi|441639338|ref|XP_004090203.1| PREDICTED: LOW QUALITY PROTEIN: RNA-binding protein 38 [Nomascus
leucogenys]
Length = 403
Score = 68.2 bits (165), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 37/58 (63%), Positives = 38/58 (65%), Gaps = 7/58 (12%)
Query: 1 MGDRPAAERACKDPNPIIDGRKANVNLAILGAKPRGTLPPGISHQRSLALGSNDFEYT 58
M DR AAERACKDPNPIIDGRKANVNLA LGAKPR S Q A+G T
Sbjct: 246 MADRAAAERACKDPNPIIDGRKANVNLAYLGAKPR-------SLQTGFAIGVQQLHPT 296
>gi|481241|pir||S38383 SEB4B protein - human (fragment)
Length = 229
Score = 68.2 bits (165), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 31/34 (91%), Positives = 31/34 (91%)
Query: 1 MGDRPAAERACKDPNPIIDGRKANVNLAILGAKP 34
M DR AAERACKDPNPIIDGRKANVNLA LGAKP
Sbjct: 72 MADRAAAERACKDPNPIIDGRKANVNLAYLGAKP 105
>gi|407421|emb|CAA53064.1| SEB4B [Homo sapiens]
Length = 230
Score = 68.2 bits (165), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 31/34 (91%), Positives = 31/34 (91%)
Query: 1 MGDRPAAERACKDPNPIIDGRKANVNLAILGAKP 34
M DR AAERACKDPNPIIDGRKANVNLA LGAKP
Sbjct: 73 MADRAAAERACKDPNPIIDGRKANVNLAYLGAKP 106
>gi|47225499|emb|CAG11982.1| unnamed protein product [Tetraodon nigroviridis]
Length = 261
Score = 68.2 bits (165), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 31/39 (79%), Positives = 33/39 (84%)
Query: 1 MGDRPAAERACKDPNPIIDGRKANVNLAILGAKPRGTLP 39
M DR +A+RACKDPNPIIDGRKANVNLA LGAKPR P
Sbjct: 60 MADRASADRACKDPNPIIDGRKANVNLAYLGAKPRVIQP 98
>gi|432110182|gb|ELK33958.1| RNA-binding protein 38 [Myotis davidii]
Length = 158
Score = 67.8 bits (164), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 31/36 (86%), Positives = 31/36 (86%)
Query: 1 MGDRPAAERACKDPNPIIDGRKANVNLAILGAKPRG 36
M DR AAERACKDPNP IDGRKANVNLA LGAKPR
Sbjct: 1 MADRAAAERACKDPNPNIDGRKANVNLAYLGAKPRS 36
>gi|209156202|gb|ACI34333.1| RNA-binding protein 24-B [Salmo salar]
Length = 240
Score = 67.8 bits (164), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 31/36 (86%), Positives = 33/36 (91%)
Query: 1 MGDRPAAERACKDPNPIIDGRKANVNLAILGAKPRG 36
M D+ AAERACKDPNPIIDGRKANVNLA +GAKPRG
Sbjct: 74 MLDQGAAERACKDPNPIIDGRKANVNLAYIGAKPRG 109
>gi|432908497|ref|XP_004077890.1| PREDICTED: RNA-binding protein 24-like isoform 2 [Oryzias latipes]
Length = 121
Score = 67.8 bits (164), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 32/43 (74%), Positives = 36/43 (83%), Gaps = 1/43 (2%)
Query: 1 MGDRPAAERACKDPNPIIDGRKANVNLAILGAKPRGTLPPGIS 43
M DR +A+RACKDPNPIIDGRKANVNLA LGAKPR + PG +
Sbjct: 60 MADRASADRACKDPNPIIDGRKANVNLAYLGAKPR-VIQPGFA 101
>gi|326916985|ref|XP_003204785.1| PREDICTED: RNA-binding protein 24-like [Meleagris gallopavo]
Length = 128
Score = 67.8 bits (164), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 34/43 (79%), Positives = 36/43 (83%), Gaps = 1/43 (2%)
Query: 1 MGDRPAAERACKDPNPIIDGRKANVNLAILGAKPRGTLPPGIS 43
M DR AAERACKDPNPIIDGRKANVNLA LGAKPR + PG +
Sbjct: 1 MADRAAAERACKDPNPIIDGRKANVNLAYLGAKPR-IMQPGFA 42
>gi|291409234|ref|XP_002720915.1| PREDICTED: RNA binding motif protein 24 [Oryctolagus cuniculus]
Length = 366
Score = 67.8 bits (164), Expect = 9e-10, Method: Composition-based stats.
Identities = 34/43 (79%), Positives = 36/43 (83%), Gaps = 1/43 (2%)
Query: 1 MGDRPAAERACKDPNPIIDGRKANVNLAILGAKPRGTLPPGIS 43
M DR AAERACKDPNPIIDGRKANVNLA LGAKPR + PG +
Sbjct: 189 MADRAAAERACKDPNPIIDGRKANVNLAYLGAKPR-IMQPGFA 230
>gi|426251364|ref|XP_004019393.1| PREDICTED: uncharacterized protein LOC101112521 [Ovis aries]
Length = 431
Score = 67.4 bits (163), Expect = 9e-10, Method: Composition-based stats.
Identities = 34/43 (79%), Positives = 36/43 (83%), Gaps = 1/43 (2%)
Query: 1 MGDRPAAERACKDPNPIIDGRKANVNLAILGAKPRGTLPPGIS 43
M DR AAERACKDPNPIIDGRKANVNLA LGAKPR + PG +
Sbjct: 254 MADRAAAERACKDPNPIIDGRKANVNLAYLGAKPR-IMQPGFA 295
>gi|440912498|gb|ELR62060.1| RNA-binding protein 38, partial [Bos grunniens mutus]
Length = 225
Score = 67.4 bits (163), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 31/35 (88%), Positives = 31/35 (88%)
Query: 1 MGDRPAAERACKDPNPIIDGRKANVNLAILGAKPR 35
M DR AAERACKDPNP IDGRKANVNLA LGAKPR
Sbjct: 68 MADRAAAERACKDPNPNIDGRKANVNLAYLGAKPR 102
>gi|355715681|gb|AES05402.1| RNA binding motif protein 38 [Mustela putorius furo]
Length = 176
Score = 67.4 bits (163), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 31/36 (86%), Positives = 31/36 (86%)
Query: 1 MGDRPAAERACKDPNPIIDGRKANVNLAILGAKPRG 36
M DR AAERACKDPNP IDGRKANVNLA LGAKPR
Sbjct: 21 MADRAAAERACKDPNPNIDGRKANVNLAYLGAKPRS 56
>gi|157427752|ref|NP_001098782.1| RNA-binding protein 38 [Sus scrofa]
gi|147223340|emb|CAN13254.1| RNA-binding region (RNP1, RRM) containing 1 [Sus scrofa]
Length = 239
Score = 67.4 bits (163), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 31/35 (88%), Positives = 31/35 (88%)
Query: 1 MGDRPAAERACKDPNPIIDGRKANVNLAILGAKPR 35
M DR AAERACKDPNP IDGRKANVNLA LGAKPR
Sbjct: 82 MADRAAAERACKDPNPNIDGRKANVNLAYLGAKPR 116
>gi|281348443|gb|EFB24027.1| hypothetical protein PANDA_003589 [Ailuropoda melanoleuca]
Length = 118
Score = 67.4 bits (163), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 31/36 (86%), Positives = 31/36 (86%)
Query: 1 MGDRPAAERACKDPNPIIDGRKANVNLAILGAKPRG 36
M DR AAERACKDPNP IDGRKANVNLA LGAKPR
Sbjct: 3 MADRAAAERACKDPNPNIDGRKANVNLAYLGAKPRS 38
>gi|329664824|ref|NP_001192952.1| RNA-binding protein 38 [Bos taurus]
gi|296480906|tpg|DAA23021.1| TPA: RNA binding motif protein 38-like [Bos taurus]
Length = 239
Score = 67.4 bits (163), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 31/35 (88%), Positives = 31/35 (88%)
Query: 1 MGDRPAAERACKDPNPIIDGRKANVNLAILGAKPR 35
M DR AAERACKDPNP IDGRKANVNLA LGAKPR
Sbjct: 82 MADRAAAERACKDPNPNIDGRKANVNLAYLGAKPR 116
>gi|410953514|ref|XP_003983415.1| PREDICTED: RNA-binding protein 38 [Felis catus]
Length = 194
Score = 67.4 bits (163), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 31/36 (86%), Positives = 31/36 (86%)
Query: 1 MGDRPAAERACKDPNPIIDGRKANVNLAILGAKPRG 36
M DR AAERACKDPNP IDGRKANVNLA LGAKPR
Sbjct: 37 MADRAAAERACKDPNPNIDGRKANVNLAYLGAKPRS 72
>gi|410899993|ref|XP_003963481.1| PREDICTED: RNA-binding protein 38-like [Takifugu rubripes]
Length = 246
Score = 67.0 bits (162), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 31/37 (83%), Positives = 32/37 (86%)
Query: 1 MGDRPAAERACKDPNPIIDGRKANVNLAILGAKPRGT 37
M DR AAERACKD NPIIDGRKANVNLA LGAKPR +
Sbjct: 77 MVDRGAAERACKDANPIIDGRKANVNLAYLGAKPRSS 113
>gi|426241899|ref|XP_004023390.1| PREDICTED: LOW QUALITY PROTEIN: RNA-binding protein 38-like,
partial [Ovis aries]
Length = 172
Score = 66.6 bits (161), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/35 (88%), Positives = 31/35 (88%)
Query: 1 MGDRPAAERACKDPNPIIDGRKANVNLAILGAKPR 35
M DR AAERACKDPNP IDGRKANVNLA LGAKPR
Sbjct: 27 MADRAAAERACKDPNPNIDGRKANVNLAYLGAKPR 61
>gi|355784366|gb|EHH65217.1| RNA-binding motif protein 38, partial [Macaca fascicularis]
Length = 138
Score = 66.6 bits (161), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 35/57 (61%), Positives = 38/57 (66%), Gaps = 7/57 (12%)
Query: 2 GDRPAAERACKDPNPIIDGRKANVNLAILGAKPRGTLPPGISHQRSLALGSNDFEYT 58
DR AA+RACKDPNPIIDGRKANVNLA LGAKPR S Q A+G + T
Sbjct: 4 ADRAAAKRACKDPNPIIDGRKANVNLAYLGAKPR-------SLQTGFAIGVQQMDPT 53
>gi|147223339|emb|CAN13253.1| RNA-binding region (RNP1, RRM) containing 1 [Sus scrofa]
Length = 193
Score = 66.6 bits (161), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 40/85 (47%), Positives = 47/85 (55%), Gaps = 13/85 (15%)
Query: 1 MGDRPAAERACKDPNPIIDGRKANVNLAILGAKPRGTLPPGISHQRSLALGSNDFEYTGW 60
M DR AAERACKDPNP IDGRKANVNLA LGAKPR S Q A+G T
Sbjct: 82 MADRAAAERACKDPNPNIDGRKANVNLAYLGAKPR-------SLQTGFAIGVQQLHPT-- 132
Query: 61 PSFLMIYVHMGSILTFEFNPFLKPY 85
+I G + + +P L+ +
Sbjct: 133 ----LIQRTYGHLRVSQNHPLLRRF 153
>gi|308510943|ref|XP_003117654.1| CRE-SUP-12 protein [Caenorhabditis remanei]
gi|308238300|gb|EFO82252.1| CRE-SUP-12 protein [Caenorhabditis remanei]
Length = 246
Score = 66.2 bits (160), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 29/38 (76%), Positives = 33/38 (86%)
Query: 1 MGDRPAAERACKDPNPIIDGRKANVNLAILGAKPRGTL 38
M D+ +A+RACKDPNPIIDGRKANVNLA LGAKPR +
Sbjct: 82 MKDKASADRACKDPNPIIDGRKANVNLAYLGAKPRNNV 119
>gi|198418763|ref|XP_002120013.1| PREDICTED: similar to RNA binding motif protein 24 [Ciona
intestinalis]
Length = 275
Score = 66.2 bits (160), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 28/35 (80%), Positives = 32/35 (91%)
Query: 1 MGDRPAAERACKDPNPIIDGRKANVNLAILGAKPR 35
M ++ AAERACKDPNP+IDGRKANVNLA +GAKPR
Sbjct: 59 MTEKGAAERACKDPNPVIDGRKANVNLAYIGAKPR 93
>gi|209153906|gb|ACI33185.1| RNA-binding protein 24-B [Salmo salar]
Length = 239
Score = 66.2 bits (160), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 29/35 (82%), Positives = 32/35 (91%)
Query: 1 MGDRPAAERACKDPNPIIDGRKANVNLAILGAKPR 35
M DR +AERACKDPNPIIDGRK+NVNLA +GAKPR
Sbjct: 74 MTDRGSAERACKDPNPIIDGRKSNVNLAYIGAKPR 108
>gi|359322697|ref|XP_003639896.1| PREDICTED: LOW QUALITY PROTEIN: RNA-binding protein 38 [Canis lupus
familiaris]
Length = 269
Score = 66.2 bits (160), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/35 (88%), Positives = 31/35 (88%)
Query: 1 MGDRPAAERACKDPNPIIDGRKANVNLAILGAKPR 35
M DR AAERACKDPNP IDGRKANVNLA LGAKPR
Sbjct: 112 MADRAAAERACKDPNPNIDGRKANVNLAYLGAKPR 146
>gi|432866535|ref|XP_004070851.1| PREDICTED: RNA-binding protein 38-like [Oryzias latipes]
Length = 251
Score = 66.2 bits (160), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 30/37 (81%), Positives = 32/37 (86%)
Query: 1 MGDRPAAERACKDPNPIIDGRKANVNLAILGAKPRGT 37
M DR AAE+ACKD NPIIDGRKANVNLA LGAKPR +
Sbjct: 77 MVDRAAAEQACKDANPIIDGRKANVNLAYLGAKPRSS 113
>gi|268578925|ref|XP_002644445.1| C. briggsae CBR-SUP-12 protein [Caenorhabditis briggsae]
Length = 248
Score = 66.2 bits (160), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 29/35 (82%), Positives = 32/35 (91%)
Query: 1 MGDRPAAERACKDPNPIIDGRKANVNLAILGAKPR 35
M D+ +A+RACKDPNPIIDGRKANVNLA LGAKPR
Sbjct: 82 MKDKASADRACKDPNPIIDGRKANVNLAYLGAKPR 116
>gi|417397613|gb|JAA45840.1| Putative rna-binding protein 38 [Desmodus rotundus]
Length = 236
Score = 65.9 bits (159), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 31/35 (88%), Positives = 31/35 (88%)
Query: 1 MGDRPAAERACKDPNPIIDGRKANVNLAILGAKPR 35
M DR AAERACKDPNP IDGRKANVNLA LGAKPR
Sbjct: 82 MVDRAAAERACKDPNPNIDGRKANVNLAYLGAKPR 116
>gi|341874047|gb|EGT29982.1| CBN-SUP-12 protein [Caenorhabditis brenneri]
Length = 243
Score = 65.9 bits (159), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 29/35 (82%), Positives = 32/35 (91%)
Query: 1 MGDRPAAERACKDPNPIIDGRKANVNLAILGAKPR 35
M D+ +A+RACKDPNPIIDGRKANVNLA LGAKPR
Sbjct: 81 MKDKASADRACKDPNPIIDGRKANVNLAYLGAKPR 115
>gi|321463132|gb|EFX74150.1| hypothetical protein DAPPUDRAFT_36959 [Daphnia pulex]
Length = 88
Score = 65.9 bits (159), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 30/35 (85%), Positives = 31/35 (88%)
Query: 1 MGDRPAAERACKDPNPIIDGRKANVNLAILGAKPR 35
M DR AAERACKD NPIIDGRKANVNLA +GAKPR
Sbjct: 54 MSDRLAAERACKDANPIIDGRKANVNLAYVGAKPR 88
>gi|431894523|gb|ELK04323.1| RNA-binding protein 38 [Pteropus alecto]
Length = 322
Score = 62.0 bits (149), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 29/33 (87%), Positives = 30/33 (90%)
Query: 3 DRPAAERACKDPNPIIDGRKANVNLAILGAKPR 35
+R AAERACKDPNP IDGRKANVNLA LGAKPR
Sbjct: 169 NRAAAERACKDPNPNIDGRKANVNLAYLGAKPR 201
>gi|241853670|ref|XP_002415913.1| rrm motif containing protein, putative [Ixodes scapularis]
gi|215510127|gb|EEC19580.1| rrm motif containing protein, putative [Ixodes scapularis]
Length = 56
Score = 61.6 bits (148), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 31/41 (75%), Positives = 31/41 (75%)
Query: 1 MGDRPAAERACKDPNPIIDGRKANVNLAILGAKPRGTLPPG 41
M DR AAERA KD NPIIDGRKANVNLA LGAKPR G
Sbjct: 1 MVDRDAAERAVKDANPIIDGRKANVNLAYLGAKPRANAHNG 41
>gi|427776715|gb|JAA53809.1| Hypothetical protein [Rhipicephalus pulchellus]
Length = 263
Score = 59.7 bits (143), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/35 (82%), Positives = 30/35 (85%)
Query: 1 MGDRPAAERACKDPNPIIDGRKANVNLAILGAKPR 35
M DR AAERA K+ NPIIDGRKANVNLA LGAKPR
Sbjct: 62 MVDRDAAERAVKEANPIIDGRKANVNLAYLGAKPR 96
>gi|196008421|ref|XP_002114076.1| hypothetical protein TRIADDRAFT_58176 [Trichoplax adhaerens]
gi|190583095|gb|EDV23166.1| hypothetical protein TRIADDRAFT_58176 [Trichoplax adhaerens]
Length = 218
Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/35 (77%), Positives = 28/35 (80%)
Query: 1 MGDRPAAERACKDPNPIIDGRKANVNLAILGAKPR 35
M D+ A RACKD NPIIDGRKANVNLA LGAK R
Sbjct: 1 MVDKEGATRACKDTNPIIDGRKANVNLAYLGAKQR 35
>gi|196008419|ref|XP_002114075.1| conserved hypothetical protein [Trichoplax adhaerens]
gi|190583094|gb|EDV23165.1| conserved hypothetical protein [Trichoplax adhaerens]
Length = 91
Score = 58.5 bits (140), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 27/35 (77%), Positives = 28/35 (80%)
Query: 1 MGDRPAAERACKDPNPIIDGRKANVNLAILGAKPR 35
M D+ A RACKD NPIIDGRKANVNLA LGAK R
Sbjct: 55 MVDKEGATRACKDTNPIIDGRKANVNLAYLGAKQR 89
>gi|403307342|ref|XP_003944159.1| PREDICTED: uncharacterized protein LOC101041724 [Saimiri
boliviensis boliviensis]
Length = 466
Score = 57.8 bits (138), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 27/42 (64%), Positives = 34/42 (80%), Gaps = 1/42 (2%)
Query: 1 MGDRPAAERACKDPNPIIDGRKANVNLAILGAKPRGTLPPGI 42
M +R AA+RAC+DP+P+IDGRK NVNLA LGA+ R +LP G
Sbjct: 81 MANRAAAQRACEDPHPVIDGRKTNVNLAYLGAR-RRSLPTGF 121
>gi|348513177|ref|XP_003444119.1| PREDICTED: RNA-binding protein 24-like [Oreochromis niloticus]
Length = 234
Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/33 (78%), Positives = 28/33 (84%), Gaps = 1/33 (3%)
Query: 11 CKDPNPIIDGRKANVNLAILGAKPRGTLPPGIS 43
CKDPNPIIDGRKANVNLA LGAKPR + PG +
Sbjct: 69 CKDPNPIIDGRKANVNLAYLGAKPR-VMQPGFT 100
>gi|390334887|ref|XP_003724037.1| PREDICTED: RNA-binding protein 38-like [Strongylocentrotus
purpuratus]
Length = 129
Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/35 (74%), Positives = 28/35 (80%)
Query: 1 MGDRPAAERACKDPNPIIDGRKANVNLAILGAKPR 35
M D+ AE A K+ NPIIDGRKANVNLA LGAKPR
Sbjct: 58 MSDQREAETATKEANPIIDGRKANVNLAFLGAKPR 92
>gi|157818373|ref|NP_001102435.1| RNA-binding protein 38 [Rattus norvegicus]
gi|149030034|gb|EDL85126.1| RNA-binding region (RNP1, RRM) containing 1 (predicted), isoform
CRA_a [Rattus norvegicus]
gi|149030035|gb|EDL85127.1| RNA-binding region (RNP1, RRM) containing 1 (predicted), isoform
CRA_a [Rattus norvegicus]
Length = 158
Score = 55.8 bits (133), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 24/26 (92%), Positives = 24/26 (92%)
Query: 11 CKDPNPIIDGRKANVNLAILGAKPRG 36
CKDPNPIIDGRKANVNLA LGAKPR
Sbjct: 11 CKDPNPIIDGRKANVNLAYLGAKPRS 36
>gi|332858732|ref|XP_001170164.2| PREDICTED: RNA-binding protein 38 [Pan troglodytes]
Length = 216
Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 24/25 (96%), Positives = 24/25 (96%)
Query: 11 CKDPNPIIDGRKANVNLAILGAKPR 35
CKDPNPIIDGRKANVNLA LGAKPR
Sbjct: 69 CKDPNPIIDGRKANVNLAYLGAKPR 93
>gi|354478559|ref|XP_003501482.1| PREDICTED: RNA-binding protein 38-like [Cricetulus griseus]
Length = 158
Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 24/26 (92%), Positives = 24/26 (92%)
Query: 11 CKDPNPIIDGRKANVNLAILGAKPRG 36
CKDPNPIIDGRKANVNLA LGAKPR
Sbjct: 11 CKDPNPIIDGRKANVNLAYLGAKPRS 36
>gi|148674674|gb|EDL06621.1| RNA binding motif protein 38, isoform CRA_b [Mus musculus]
gi|148674676|gb|EDL06623.1| RNA binding motif protein 38, isoform CRA_b [Mus musculus]
Length = 158
Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/48 (60%), Positives = 30/48 (62%), Gaps = 7/48 (14%)
Query: 11 CKDPNPIIDGRKANVNLAILGAKPRGTLPPGISHQRSLALGSNDFEYT 58
CKDPNPIIDGRKANVNLA LGAKPR S Q A+G T
Sbjct: 11 CKDPNPIIDGRKANVNLAYLGAKPR-------SLQTGFAVGVQQLHPT 51
>gi|149030036|gb|EDL85128.1| RNA-binding region (RNP1, RRM) containing 1 (predicted), isoform
CRA_b [Rattus norvegicus]
Length = 237
Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 24/25 (96%), Positives = 24/25 (96%)
Query: 11 CKDPNPIIDGRKANVNLAILGAKPR 35
CKDPNPIIDGRKANVNLA LGAKPR
Sbjct: 90 CKDPNPIIDGRKANVNLAYLGAKPR 114
>gi|410216998|gb|JAA05718.1| RNA binding motif protein 38 [Pan troglodytes]
gi|410298138|gb|JAA27669.1| RNA binding motif protein 38 [Pan troglodytes]
Length = 239
Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/48 (60%), Positives = 30/48 (62%), Gaps = 7/48 (14%)
Query: 11 CKDPNPIIDGRKANVNLAILGAKPRGTLPPGISHQRSLALGSNDFEYT 58
CKDPNPIIDGRKANVNLA LGAKPR S Q A+G T
Sbjct: 92 CKDPNPIIDGRKANVNLAYLGAKPR-------SLQTGFAIGVQQLHPT 132
>gi|407468|emb|CAA53065.1| SEB4 [Mus musculus]
Length = 237
Score = 55.1 bits (131), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 24/25 (96%), Positives = 24/25 (96%)
Query: 11 CKDPNPIIDGRKANVNLAILGAKPR 35
CKDPNPIIDGRKANVNLA LGAKPR
Sbjct: 90 CKDPNPIIDGRKANVNLAYLGAKPR 114
>gi|134053933|ref|NP_062420.2| RNA-binding protein 38 [Mus musculus]
gi|215273893|sp|Q62176.2|RBM38_MOUSE RecName: Full=RNA-binding protein 38; AltName: Full=RNA-binding
motif protein 38; AltName: Full=RNA-binding
region-containing protein 1; AltName: Full=ssDNA-binding
protein SEB4
gi|55154535|gb|AAH85307.1| RNA binding motif protein 38 [Mus musculus]
gi|74187619|dbj|BAE36749.1| unnamed protein product [Mus musculus]
gi|74196725|dbj|BAE43103.1| unnamed protein product [Mus musculus]
gi|74222042|dbj|BAE26841.1| unnamed protein product [Mus musculus]
gi|148674673|gb|EDL06620.1| RNA binding motif protein 38, isoform CRA_a [Mus musculus]
Length = 237
Score = 55.1 bits (131), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 24/25 (96%), Positives = 24/25 (96%)
Query: 11 CKDPNPIIDGRKANVNLAILGAKPR 35
CKDPNPIIDGRKANVNLA LGAKPR
Sbjct: 90 CKDPNPIIDGRKANVNLAYLGAKPR 114
>gi|74153190|dbj|BAE38891.1| unnamed protein product [Mus musculus]
Length = 167
Score = 54.7 bits (130), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 29/48 (60%), Positives = 30/48 (62%), Gaps = 7/48 (14%)
Query: 11 CKDPNPIIDGRKANVNLAILGAKPRGTLPPGISHQRSLALGSNDFEYT 58
CKDPNPIIDGRKANVNLA LGAKPR S Q A+G T
Sbjct: 90 CKDPNPIIDGRKANVNLAYLGAKPR-------SLQTGFAVGVQQLHPT 130
>gi|340379888|ref|XP_003388457.1| PREDICTED: RNA-binding protein 24-like [Amphimedon queenslandica]
Length = 214
Score = 54.7 bits (130), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 24/39 (61%), Positives = 29/39 (74%)
Query: 1 MGDRPAAERACKDPNPIIDGRKANVNLAILGAKPRGTLP 39
M + AE+AC +PNP+IDGRKANVNLA LGAK + P
Sbjct: 64 MKHKEDAEKACANPNPVIDGRKANVNLAYLGAKNKQQTP 102
>gi|313240807|emb|CBY33099.1| unnamed protein product [Oikopleura dioica]
Length = 252
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/35 (65%), Positives = 29/35 (82%)
Query: 1 MGDRPAAERACKDPNPIIDGRKANVNLAILGAKPR 35
M + A++A ++PNPIIDGRKANVNLA +GAKPR
Sbjct: 61 MAKKEDAQKAIQEPNPIIDGRKANVNLAYIGAKPR 95
>gi|256085101|ref|XP_002578762.1| rrm-containing protein seb-4 [Schistosoma mansoni]
Length = 475
Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 26/38 (68%), Positives = 28/38 (73%), Gaps = 5/38 (13%)
Query: 10 ACKDPNPIIDGRKANVNLAILGAKPR-----GTLPPGI 42
A +DPNP IDGRKANVNLA+LGAKPR T PGI
Sbjct: 69 AIRDPNPCIDGRKANVNLAVLGAKPRLMPGTNTAVPGI 106
>gi|356522476|ref|XP_003529872.1| PREDICTED: uncharacterized protein LOC100782484 [Glycine max]
Length = 290
Score = 51.2 bits (121), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 24/47 (51%), Positives = 31/47 (65%)
Query: 3 DRPAAERACKDPNPIIDGRKANVNLAILGAKPRGTLPPGISHQRSLA 49
D AA +AC++P+PIIDGR+AN N+A +GA T P H RS A
Sbjct: 114 DPEAAMKACQNPSPIIDGRRANCNIASIGANKNRTRAPQHQHGRSRA 160
>gi|321443204|gb|EFX60016.1| hypothetical protein DAPPUDRAFT_39159 [Daphnia pulex]
Length = 91
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/30 (76%), Positives = 25/30 (83%)
Query: 6 AAERACKDPNPIIDGRKANVNLAILGAKPR 35
AA+ A +DPNPIIDGRKANVNLA LG K R
Sbjct: 58 AAQNAIRDPNPIIDGRKANVNLAYLGVKTR 87
>gi|6554473|gb|AAF16655.1|AC012394_4 putative RNA-binding protein; 16955-18423 [Arabidopsis thaliana]
gi|12323977|gb|AAG51948.1|AC015450_9 putative RNA-binding protein; 24808-23340 [Arabidopsis thaliana]
Length = 279
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/37 (67%), Positives = 27/37 (72%), Gaps = 1/37 (2%)
Query: 3 DRPAAERACKDPNPIIDGRKANVNLAILGAKPRGTLP 39
D AA RAC DP PIIDGR+AN NLA LG +PR LP
Sbjct: 74 DPEAARRACADPTPIIDGRRANCNLASLG-RPRPPLP 109
>gi|76157398|gb|AAX28335.2| SJCHGC05136 protein [Schistosoma japonicum]
Length = 184
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/26 (84%), Positives = 24/26 (92%)
Query: 10 ACKDPNPIIDGRKANVNLAILGAKPR 35
A +DPNP IDGRKANVNLA+LGAKPR
Sbjct: 69 AIRDPNPCIDGRKANVNLAVLGAKPR 94
>gi|226467816|emb|CAX69784.1| RNA-binding protein 38 [Schistosoma japonicum]
Length = 112
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/26 (84%), Positives = 24/26 (92%)
Query: 10 ACKDPNPIIDGRKANVNLAILGAKPR 35
A +DPNP IDGRKANVNLA+LGAKPR
Sbjct: 69 AIRDPNPCIDGRKANVNLAVLGAKPR 94
>gi|356517913|ref|XP_003527630.1| PREDICTED: 40S ribosomal protein S19, mitochondrial-like [Glycine
max]
Length = 293
Score = 49.3 bits (116), Expect = 3e-04, Method: Composition-based stats.
Identities = 26/40 (65%), Positives = 29/40 (72%), Gaps = 1/40 (2%)
Query: 3 DRPAAERACKDPNPIIDGRKANVNLAILGAKPRGTLPPGI 42
D AA RAC DP P+IDGR+AN NLA LG +PR LP GI
Sbjct: 82 DPEAARRACADPTPVIDGRRANCNLASLG-RPRPPLPYGI 120
>gi|115452347|ref|NP_001049774.1| Os03g0286500 [Oryza sativa Japonica Group]
gi|108707565|gb|ABF95360.1| RNA recognition motif family protein, expressed [Oryza sativa
Japonica Group]
gi|113548245|dbj|BAF11688.1| Os03g0286500 [Oryza sativa Japonica Group]
Length = 310
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/34 (61%), Positives = 27/34 (79%)
Query: 6 AAERACKDPNPIIDGRKANVNLAILGAKPRGTLP 39
AA++AC+D P+I+GR+AN NLA LGAKPR P
Sbjct: 86 AAKKACEDATPVINGRRANCNLASLGAKPRAQPP 119
>gi|358253200|dbj|GAA52498.1| RNA-binding protein 24 [Clonorchis sinensis]
Length = 495
Score = 49.3 bits (116), Expect = 3e-04, Method: Composition-based stats.
Identities = 25/34 (73%), Positives = 28/34 (82%), Gaps = 2/34 (5%)
Query: 10 ACKDPNPIIDGRKANVNLAILGAKPRGTLPPGIS 43
A +DPNP IDGRKANVNLA+LGAKPR L PG +
Sbjct: 129 AIRDPNPCIDGRKANVNLAVLGAKPR--LMPGAT 160
>gi|302795636|ref|XP_002979581.1| hypothetical protein SELMODRAFT_38604 [Selaginella
moellendorffii]
gi|300152829|gb|EFJ19470.1| hypothetical protein SELMODRAFT_38604 [Selaginella
moellendorffii]
Length = 91
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/38 (57%), Positives = 28/38 (73%), Gaps = 2/38 (5%)
Query: 3 DRPAAERACKDPNPIIDGRKANVNLAILGAKPRGTLPP 40
D +A RAC++P P+IDGR+AN NLA LG +PR PP
Sbjct: 56 DPESARRACENPTPVIDGRRANCNLAALGVRPR--FPP 91
>gi|219363281|ref|NP_001136575.1| hypothetical protein [Zea mays]
gi|194696232|gb|ACF82200.1| unknown [Zea mays]
gi|413956076|gb|AFW88725.1| hypothetical protein ZEAMMB73_158124 [Zea mays]
Length = 279
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 20/30 (66%), Positives = 26/30 (86%)
Query: 6 AAERACKDPNPIIDGRKANVNLAILGAKPR 35
AA++AC+D P+I+GR+AN NLA LGAKPR
Sbjct: 78 AAKKACEDATPVINGRRANCNLASLGAKPR 107
>gi|226482446|emb|CAX73822.1| RNA binding motif protein 24 [Schistosoma japonicum]
Length = 468
Score = 48.5 bits (114), Expect = 4e-04, Method: Composition-based stats.
Identities = 22/26 (84%), Positives = 24/26 (92%)
Query: 10 ACKDPNPIIDGRKANVNLAILGAKPR 35
A +DPNP IDGRKANVNLA+LGAKPR
Sbjct: 69 AIRDPNPCIDGRKANVNLAVLGAKPR 94
>gi|359489471|ref|XP_002267504.2| PREDICTED: uncharacterized protein LOC100257521 [Vitis vinifera]
gi|296089004|emb|CBI38707.3| unnamed protein product [Vitis vinifera]
Length = 267
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/42 (57%), Positives = 29/42 (69%), Gaps = 2/42 (4%)
Query: 3 DRPAAERACKDPNPIIDGRKANVNLAILGAKPRGTLPPGISH 44
D AA RAC++P+P+IDGR+AN NLA LGA T PP H
Sbjct: 66 DPDAAMRACQNPSPVIDGRRANCNLASLGAHK--TRPPTPQH 105
>gi|156381227|ref|XP_001632167.1| predicted protein [Nematostella vectensis]
gi|156219219|gb|EDO40104.1| predicted protein [Nematostella vectensis]
Length = 99
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 23/37 (62%), Positives = 28/37 (75%)
Query: 1 MGDRPAAERACKDPNPIIDGRKANVNLAILGAKPRGT 37
M AAE ACK+ P+I+GR+ANVNLA LGAKP+ T
Sbjct: 58 MATSDAAELACKNKRPMIEGRQANVNLAYLGAKPKPT 94
>gi|212274507|ref|NP_001130852.1| uncharacterized protein LOC100191956 [Zea mays]
gi|194690272|gb|ACF79220.1| unknown [Zea mays]
gi|195616000|gb|ACG29830.1| hypothetical protein [Zea mays]
gi|414866249|tpg|DAA44806.1| TPA: hypothetical protein ZEAMMB73_243908 [Zea mays]
Length = 212
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 20/30 (66%), Positives = 26/30 (86%)
Query: 6 AAERACKDPNPIIDGRKANVNLAILGAKPR 35
AA++AC+D P+I+GR+AN NLA LGAKPR
Sbjct: 79 AAKKACEDATPVINGRRANCNLAALGAKPR 108
>gi|194697728|gb|ACF82948.1| unknown [Zea mays]
gi|414866250|tpg|DAA44807.1| TPA: hypothetical protein ZEAMMB73_243908 [Zea mays]
Length = 297
Score = 48.1 bits (113), Expect = 6e-04, Method: Composition-based stats.
Identities = 23/37 (62%), Positives = 29/37 (78%), Gaps = 2/37 (5%)
Query: 6 AAERACKDPNPIIDGRKANVNLAILGAKPRGTLPPGI 42
AA++AC+D P+I+GR+AN NLA LGAKPR PP I
Sbjct: 79 AAKKACEDATPVINGRRANCNLAALGAKPRP--PPHI 113
>gi|356508471|ref|XP_003522980.1| PREDICTED: RNA-binding protein 24-like [Glycine max]
Length = 286
Score = 48.1 bits (113), Expect = 7e-04, Method: Composition-based stats.
Identities = 28/50 (56%), Positives = 33/50 (66%), Gaps = 1/50 (2%)
Query: 3 DRPAAERACKDPNPIIDGRKANVNLAILGAKPRGTLPPGISHQRSLALGS 52
D AA RAC DP+P+IDGR+AN NLA LG +PR LP G S +GS
Sbjct: 82 DPEAARRACADPSPVIDGRRANCNLASLG-RPRPPLPYGRIRPASPYVGS 130
>gi|224135011|ref|XP_002321961.1| predicted protein [Populus trichocarpa]
gi|224135019|ref|XP_002321963.1| predicted protein [Populus trichocarpa]
gi|222868957|gb|EEF06088.1| predicted protein [Populus trichocarpa]
gi|222868959|gb|EEF06090.1| predicted protein [Populus trichocarpa]
Length = 92
Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 21/38 (55%), Positives = 27/38 (71%)
Query: 3 DRPAAERACKDPNPIIDGRKANVNLAILGAKPRGTLPP 40
D +A RAC++P P+IDGR+AN NLA GAK +G P
Sbjct: 55 DPDSATRACQNPYPVIDGRRANCNLAAFGAKKKGPTEP 92
>gi|224086108|ref|XP_002307819.1| predicted protein [Populus trichocarpa]
gi|222857268|gb|EEE94815.1| predicted protein [Populus trichocarpa]
Length = 286
Score = 47.8 bits (112), Expect = 8e-04, Method: Composition-based stats.
Identities = 25/36 (69%), Positives = 27/36 (75%), Gaps = 1/36 (2%)
Query: 6 AAERACKDPNPIIDGRKANVNLAILGAKPRGTLPPG 41
AA RAC DP PIIDGR+AN NLA LG +PR LP G
Sbjct: 85 AARRACADPTPIIDGRRANCNLASLG-RPRPPLPYG 119
>gi|3510252|gb|AAC33496.1| putative RNA-binding protein [Arabidopsis thaliana]
Length = 304
Score = 47.8 bits (112), Expect = 9e-04, Method: Composition-based stats.
Identities = 23/36 (63%), Positives = 27/36 (75%), Gaps = 1/36 (2%)
Query: 6 AAERACKDPNPIIDGRKANVNLAILGA-KPRGTLPP 40
AA RAC++ NP+IDGR+AN NLA LGA KPR P
Sbjct: 75 AAMRACQNMNPVIDGRRANCNLACLGAQKPRPPTSP 110
>gi|363807832|ref|NP_001242695.1| uncharacterized protein LOC100811977 [Glycine max]
gi|255644898|gb|ACU22949.1| unknown [Glycine max]
Length = 287
Score = 47.8 bits (112), Expect = 0.001, Method: Composition-based stats.
Identities = 23/38 (60%), Positives = 28/38 (73%), Gaps = 4/38 (10%)
Query: 3 DRPAAERACKDPNPIIDGRKANVNLAILG----AKPRG 36
D+ +A RAC DPNPIIDGR+AN N+A LG + PRG
Sbjct: 88 DQESARRACADPNPIIDGRRANCNIASLGRTRLSPPRG 125
>gi|297290126|ref|XP_002808418.1| PREDICTED: LOW QUALITY PROTEIN: RNA-binding protein 24-like
[Macaca mulatta]
Length = 239
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/35 (60%), Positives = 22/35 (62%)
Query: 1 MGDRPAAERACKDPNPIIDGRKANVNLAILGAKPR 35
M DR AAERACKDPNPIIDG N + K R
Sbjct: 59 MADRAAAERACKDPNPIIDGSTCTSNKCLTMHKXR 93
>gi|255539326|ref|XP_002510728.1| RNA binding protein, putative [Ricinus communis]
gi|223551429|gb|EEF52915.1| RNA binding protein, putative [Ricinus communis]
Length = 325
Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 24/36 (66%), Positives = 28/36 (77%), Gaps = 1/36 (2%)
Query: 6 AAERACKDPNPIIDGRKANVNLAILGAKPRGTLPPG 41
AA+RAC DP PIIDGR+AN NLA LG +PR +P G
Sbjct: 62 AAKRACADPTPIIDGRRANCNLASLG-RPRPPMPYG 96
>gi|357120229|ref|XP_003561831.1| PREDICTED: RNA-binding protein 38-like [Brachypodium distachyon]
Length = 160
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 33/59 (55%), Gaps = 5/59 (8%)
Query: 3 DRPAAERACKDPNPIIDGRKANVNLAILGAKPR-----GTLPPGISHQRSLALGSNDFE 56
D AA RA +DP P+IDGR+AN NLA LGA R P G++ R S+ ++
Sbjct: 58 DPEAAARALQDPTPVIDGRRANCNLAALGASQRLHPAGSAAPVGMARSRPATASSSSYQ 116
>gi|297850510|ref|XP_002893136.1| RNA recognition motif-containing protein [Arabidopsis lyrata subsp.
lyrata]
gi|297338978|gb|EFH69395.1| RNA recognition motif-containing protein [Arabidopsis lyrata subsp.
lyrata]
Length = 274
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/33 (69%), Positives = 25/33 (75%), Gaps = 1/33 (3%)
Query: 3 DRPAAERACKDPNPIIDGRKANVNLAILGAKPR 35
D AA RAC DP PIIDGR+AN NLA LG +PR
Sbjct: 74 DPEAARRACVDPAPIIDGRRANCNLASLG-RPR 105
>gi|297842407|ref|XP_002889085.1| RNA recognition motif-containing protein [Arabidopsis lyrata subsp.
lyrata]
gi|297334926|gb|EFH65344.1| RNA recognition motif-containing protein [Arabidopsis lyrata subsp.
lyrata]
Length = 283
Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 25/37 (67%), Positives = 27/37 (72%), Gaps = 1/37 (2%)
Query: 3 DRPAAERACKDPNPIIDGRKANVNLAILGAKPRGTLP 39
D AA RAC DP PIIDGR+AN NLA LG +PR LP
Sbjct: 74 DPEAARRACADPTPIIDGRRANCNLASLG-RPRPPLP 109
>gi|22330665|ref|NP_565132.2| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|332197724|gb|AEE35845.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
Length = 285
Score = 47.0 bits (110), Expect = 0.001, Method: Composition-based stats.
Identities = 25/37 (67%), Positives = 27/37 (72%), Gaps = 1/37 (2%)
Query: 3 DRPAAERACKDPNPIIDGRKANVNLAILGAKPRGTLP 39
D AA RAC DP PIIDGR+AN NLA LG +PR LP
Sbjct: 74 DPEAARRACADPTPIIDGRRANCNLASLG-RPRPPLP 109
>gi|4836901|gb|AAD30604.1|AC007369_14 Unknown protein [Arabidopsis thaliana]
Length = 288
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/29 (72%), Positives = 22/29 (75%)
Query: 3 DRPAAERACKDPNPIIDGRKANVNLAILG 31
D AA RAC DP PIIDGR+AN NLA LG
Sbjct: 74 DPEAARRACVDPTPIIDGRRANCNLASLG 102
>gi|23505939|gb|AAN28829.1| At1g20880/F9H16_14 [Arabidopsis thaliana]
Length = 274
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/29 (72%), Positives = 22/29 (75%)
Query: 3 DRPAAERACKDPNPIIDGRKANVNLAILG 31
D AA RAC DP PIIDGR+AN NLA LG
Sbjct: 74 DPEAARRACVDPTPIIDGRRANCNLASLG 102
>gi|15010636|gb|AAK73977.1| At1g20880/F9H16_14 [Arabidopsis thaliana]
Length = 274
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/29 (72%), Positives = 22/29 (75%)
Query: 3 DRPAAERACKDPNPIIDGRKANVNLAILG 31
D AA RAC DP PIIDGR+AN NLA LG
Sbjct: 74 DPEAARRACVDPTPIIDGRRANCNLASLG 102
>gi|18394923|ref|NP_564127.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|334182725|ref|NP_001185049.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|332191914|gb|AEE30035.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|332191915|gb|AEE30036.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
Length = 274
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/29 (72%), Positives = 22/29 (75%)
Query: 3 DRPAAERACKDPNPIIDGRKANVNLAILG 31
D AA RAC DP PIIDGR+AN NLA LG
Sbjct: 74 DPEAARRACVDPTPIIDGRRANCNLASLG 102
>gi|302143971|emb|CBI23076.3| unnamed protein product [Vitis vinifera]
Length = 391
Score = 47.0 bits (110), Expect = 0.001, Method: Composition-based stats.
Identities = 36/90 (40%), Positives = 44/90 (48%), Gaps = 14/90 (15%)
Query: 3 DRPAAERACKDPNPIIDGRKANVNLAILGAKPRGTLPPGISHQRSLALGSNDFEYTGWPS 62
D +A RAC+DP+P+IDGR+AN N+A LGA T PP L S G PS
Sbjct: 96 DPDSAMRACQDPSPVIDGRRANCNIASLGAHK--TRPPPHHGMERLRPASGSM---GKPS 150
Query: 63 FLMIYVHMGSILTF-EFNPFLK--PYPISG 89
H GS F + NP PY + G
Sbjct: 151 ------HHGSSTNFRQSNPHFSFPPYSVYG 174
>gi|302784460|ref|XP_002974002.1| hypothetical protein SELMODRAFT_100311 [Selaginella moellendorffii]
gi|302803482|ref|XP_002983494.1| hypothetical protein SELMODRAFT_118403 [Selaginella moellendorffii]
gi|300148737|gb|EFJ15395.1| hypothetical protein SELMODRAFT_118403 [Selaginella moellendorffii]
gi|300158334|gb|EFJ24957.1| hypothetical protein SELMODRAFT_100311 [Selaginella moellendorffii]
Length = 122
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/31 (70%), Positives = 24/31 (77%)
Query: 3 DRPAAERACKDPNPIIDGRKANVNLAILGAK 33
D AA RAC DP PIIDGR+AN NLA LGA+
Sbjct: 74 DPEAARRACVDPAPIIDGRQANCNLASLGAR 104
>gi|27476063|gb|AAO16994.1| Hypothetical protein [Oryza sativa Japonica Group]
gi|125585859|gb|EAZ26523.1| hypothetical protein OsJ_10418 [Oryza sativa Japonica Group]
Length = 339
Score = 47.0 bits (110), Expect = 0.002, Method: Composition-based stats.
Identities = 21/34 (61%), Positives = 27/34 (79%)
Query: 6 AAERACKDPNPIIDGRKANVNLAILGAKPRGTLP 39
AA++AC+D P+I+GR+AN NLA LGAKPR P
Sbjct: 115 AAKKACEDATPVINGRRANCNLASLGAKPRAQPP 148
>gi|125540879|gb|EAY87274.1| hypothetical protein OsI_08676 [Oryza sativa Indica Group]
Length = 258
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 39/90 (43%), Gaps = 24/90 (26%)
Query: 3 DRPAAERACKDPNPIIDGRKANVNLAILGAK--------------------PRGTLPPGI 42
D +A +AC+DP P+IDGR+AN NLA LG PRG G
Sbjct: 87 DPESARKACEDPTPVIDGRRANCNLASLGRAQPAVPLGRPRSAGSYFGVPVPRGVYVGGY 146
Query: 43 SHQRSLALGSNDFEYTGWPSFLMIYVHMGS 72
R+L LG Y G+P Y G+
Sbjct: 147 GQHRTLPLG----YYQGFPVPQYSYTTYGT 172
>gi|186478756|ref|NP_564168.2| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|9392682|gb|AAF87259.1|AC068562_6 Contains similarity to seb4D protein from Mus musculus gb|X75316
and contains a RNA recognition PF|00076 motif
[Arabidopsis thaliana]
gi|332192109|gb|AEE30230.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
Length = 291
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/39 (56%), Positives = 27/39 (69%), Gaps = 1/39 (2%)
Query: 3 DRPAAERACKDPNPIIDGRKANVNLAILGAKPRGTLPPG 41
D +A RA DPNP+IDGRKAN N+A G +PR + P G
Sbjct: 67 DSDSATRAVADPNPVIDGRKANCNIASFG-RPRPSTPRG 104
>gi|222623547|gb|EEE57679.1| hypothetical protein OsJ_08130 [Oryza sativa Japonica Group]
Length = 258
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 39/90 (43%), Gaps = 24/90 (26%)
Query: 3 DRPAAERACKDPNPIIDGRKANVNLAILGAK--------------------PRGTLPPGI 42
D +A +AC+DP P+IDGR+AN NLA LG PRG G
Sbjct: 87 DPESARKACEDPTPVIDGRRANCNLASLGRAQPAVPLGRPRSAGSYFGVPVPRGVYVGGY 146
Query: 43 SHQRSLALGSNDFEYTGWPSFLMIYVHMGS 72
R+L LG Y G+P Y G+
Sbjct: 147 GQHRTLPLG----YYQGFPVPQYSYTTYGT 172
>gi|413951764|gb|AFW84413.1| hypothetical protein ZEAMMB73_895673 [Zea mays]
Length = 262
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/31 (64%), Positives = 23/31 (74%)
Query: 3 DRPAAERACKDPNPIIDGRKANVNLAILGAK 33
D AA RAC DP P+IDGR+AN NLA LG +
Sbjct: 66 DSDAAMRACVDPAPVIDGRRANCNLASLGVQ 96
>gi|449445662|ref|XP_004140591.1| PREDICTED: uncharacterized protein LOC101210354 [Cucumis sativus]
gi|449487325|ref|XP_004157571.1| PREDICTED: uncharacterized LOC101210354 [Cucumis sativus]
Length = 286
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/31 (64%), Positives = 25/31 (80%)
Query: 3 DRPAAERACKDPNPIIDGRKANVNLAILGAK 33
D AA RAC++P+P+IDGR+AN NLA LGA
Sbjct: 81 DPDAAIRACQNPSPVIDGRRANCNLASLGAH 111
>gi|47229314|emb|CAG04066.1| unnamed protein product [Tetraodon nigroviridis]
Length = 252
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/26 (80%), Positives = 21/26 (80%)
Query: 9 RACKDPNPIIDGRKANVNLAILGAKP 34
RACKD NPIIDGRK VNLA LGA P
Sbjct: 59 RACKDANPIIDGRKQTVNLAYLGANP 84
>gi|218192581|gb|EEC75008.1| hypothetical protein OsI_11079 [Oryza sativa Indica Group]
Length = 454
Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats.
Identities = 21/34 (61%), Positives = 27/34 (79%)
Query: 6 AAERACKDPNPIIDGRKANVNLAILGAKPRGTLP 39
AA++AC+D P+I+GR+AN NLA LGAKPR P
Sbjct: 115 AAKKACEDATPVINGRRANCNLASLGAKPRAQPP 148
>gi|21593674|gb|AAM65641.1| unknown [Arabidopsis thaliana]
gi|88900324|gb|ABD57474.1| At1g22330 [Arabidopsis thaliana]
Length = 146
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/59 (45%), Positives = 33/59 (55%), Gaps = 3/59 (5%)
Query: 3 DRPAAERACKDPNPIIDGRKANVNLAILGAKPRGTLPPGISHQRSLA--LGSNDFEYTG 59
D +A RA DPNP+IDGRKAN N+A G +PR + P G S + G YTG
Sbjct: 67 DSDSATRAVADPNPVIDGRKANCNIASFG-RPRPSTPRGRGQGGSPSQYQGGGQSSYTG 124
>gi|357467185|ref|XP_003603877.1| RNA-binding protein 24-B [Medicago truncatula]
gi|355492925|gb|AES74128.1| RNA-binding protein 24-B [Medicago truncatula]
Length = 371
Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats.
Identities = 26/44 (59%), Positives = 31/44 (70%), Gaps = 4/44 (9%)
Query: 3 DRPAAERACKDPNPIIDGRKANVNLAILGAKPRGTLPPGISHQR 46
D AA RAC DP+P+IDGR+AN NLA G +PRG P IS+ R
Sbjct: 79 DPEAARRACADPSPVIDGRRANCNLASHG-RPRG---PPISYGR 118
>gi|297745603|emb|CBI40768.3| unnamed protein product [Vitis vinifera]
Length = 275
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/39 (58%), Positives = 28/39 (71%), Gaps = 1/39 (2%)
Query: 3 DRPAAERACKDPNPIIDGRKANVNLAILGAKPRGTLPPG 41
D +A RAC DP PIIDGR+AN NLA LG +PR ++ G
Sbjct: 82 DPESARRACLDPAPIIDGRRANCNLASLG-RPRPSMSYG 119
>gi|413938541|gb|AFW73092.1| hypothetical protein ZEAMMB73_850373 [Zea mays]
Length = 207
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/36 (55%), Positives = 28/36 (77%), Gaps = 1/36 (2%)
Query: 6 AAERACKDPNPIIDGRKANVNLAILGAKPRGTLPPG 41
+A +AC+DP P+IDGR+AN NLA LG + + +PPG
Sbjct: 85 SASKACEDPTPVIDGRRANCNLASLG-RAQHPVPPG 119
>gi|297850570|ref|XP_002893166.1| hypothetical protein ARALYDRAFT_889608 [Arabidopsis lyrata subsp.
lyrata]
gi|297339008|gb|EFH69425.1| hypothetical protein ARALYDRAFT_889608 [Arabidopsis lyrata subsp.
lyrata]
Length = 115
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/31 (64%), Positives = 25/31 (80%)
Query: 3 DRPAAERACKDPNPIIDGRKANVNLAILGAK 33
D +A +AC+DP+PIIDGRKAN NLA +G K
Sbjct: 53 DAESAAKACEDPSPIIDGRKANCNLAYIGPK 83
>gi|242066212|ref|XP_002454395.1| hypothetical protein SORBIDRAFT_04g030020 [Sorghum bicolor]
gi|241934226|gb|EES07371.1| hypothetical protein SORBIDRAFT_04g030020 [Sorghum bicolor]
Length = 295
Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/36 (55%), Positives = 28/36 (77%), Gaps = 1/36 (2%)
Query: 6 AAERACKDPNPIIDGRKANVNLAILGAKPRGTLPPG 41
+A +AC+DP P+IDGR+AN NLA LG + + +PPG
Sbjct: 98 SARKACEDPTPVIDGRRANCNLASLG-RAQHPVPPG 132
>gi|224064364|ref|XP_002301439.1| predicted protein [Populus trichocarpa]
gi|222843165|gb|EEE80712.1| predicted protein [Populus trichocarpa]
Length = 89
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/31 (64%), Positives = 26/31 (83%)
Query: 3 DRPAAERACKDPNPIIDGRKANVNLAILGAK 33
D AA RAC++P+P+IDGR+AN NLA LGA+
Sbjct: 59 DPDAAMRACQNPSPVIDGRRANCNLASLGAQ 89
>gi|224120948|ref|XP_002318459.1| predicted protein [Populus trichocarpa]
gi|222859132|gb|EEE96679.1| predicted protein [Populus trichocarpa]
Length = 90
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/31 (58%), Positives = 25/31 (80%)
Query: 6 AAERACKDPNPIIDGRKANVNLAILGAKPRG 36
+A RAC++P P+IDGR+AN NLA GA+ +G
Sbjct: 59 SATRACQNPYPVIDGRRANCNLAAFGAQKKG 89
>gi|21536939|gb|AAM61280.1| RNA binding protein-like [Arabidopsis thaliana]
Length = 261
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/33 (60%), Positives = 24/33 (72%)
Query: 3 DRPAAERACKDPNPIIDGRKANVNLAILGAKPR 35
D AA RAC+D PII+GR+AN NLA LG + R
Sbjct: 67 DAEAATRACEDSTPIINGRRANCNLASLGGRLR 99
>gi|449458055|ref|XP_004146763.1| PREDICTED: RNA-binding protein Musashi homolog 2-like [Cucumis
sativus]
gi|449531145|ref|XP_004172548.1| PREDICTED: RNA-binding protein Musashi homolog 2-like [Cucumis
sativus]
Length = 286
Score = 45.8 bits (107), Expect = 0.003, Method: Composition-based stats.
Identities = 26/48 (54%), Positives = 30/48 (62%), Gaps = 1/48 (2%)
Query: 3 DRPAAERACKDPNPIIDGRKANVNLAILGAKPRGTLPPGISHQRSLAL 50
D +A RAC DP PIIDGR+AN NLA LG +PR L G R A+
Sbjct: 82 DPESARRACADPTPIIDGRRANCNLASLG-RPRPPLSYGTGRLRQPAV 128
>gi|110740388|dbj|BAF02089.1| RNA binding protein - like [Arabidopsis thaliana]
Length = 207
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/33 (60%), Positives = 24/33 (72%)
Query: 3 DRPAAERACKDPNPIIDGRKANVNLAILGAKPR 35
D AA RAC+D PII+GR+AN NLA LG + R
Sbjct: 67 DAKAATRACEDSTPIINGRRANCNLASLGGRLR 99
>gi|297820232|ref|XP_002877999.1| hypothetical protein ARALYDRAFT_485883 [Arabidopsis lyrata subsp.
lyrata]
gi|297323837|gb|EFH54258.1| hypothetical protein ARALYDRAFT_485883 [Arabidopsis lyrata subsp.
lyrata]
Length = 262
Score = 45.8 bits (107), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/33 (60%), Positives = 24/33 (72%)
Query: 3 DRPAAERACKDPNPIIDGRKANVNLAILGAKPR 35
D AA RAC+D PII+GR+AN NLA LG + R
Sbjct: 67 DAEAATRACEDSTPIINGRRANCNLASLGGRLR 99
>gi|15232579|ref|NP_191037.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|7258381|emb|CAB77597.1| RNA binding protein-like [Arabidopsis thaliana]
gi|332645761|gb|AEE79282.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
Length = 261
Score = 45.8 bits (107), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/33 (60%), Positives = 24/33 (72%)
Query: 3 DRPAAERACKDPNPIIDGRKANVNLAILGAKPR 35
D AA RAC+D PII+GR+AN NLA LG + R
Sbjct: 67 DAKAATRACEDSTPIINGRRANCNLASLGGRLR 99
>gi|413943621|gb|AFW76270.1| hypothetical protein ZEAMMB73_511559 [Zea mays]
Length = 153
Score = 45.8 bits (107), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/42 (54%), Positives = 28/42 (66%), Gaps = 1/42 (2%)
Query: 3 DRPAAERACKDPNPIIDGRKANVNLAILGAKPRGTLPPGISH 44
D +A AC DP P+IDGR+AN NLAILG +P +P G H
Sbjct: 84 DPESARMACMDPYPVIDGRRANCNLAILG-RPGPAVPFGHQH 124
>gi|413938542|gb|AFW73093.1| hypothetical protein ZEAMMB73_850373 [Zea mays]
Length = 163
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/36 (55%), Positives = 28/36 (77%), Gaps = 1/36 (2%)
Query: 6 AAERACKDPNPIIDGRKANVNLAILGAKPRGTLPPG 41
+A +AC+DP P+IDGR+AN NLA LG + + +PPG
Sbjct: 85 SASKACEDPTPVIDGRRANCNLASLG-RAQHPVPPG 119
>gi|79315018|ref|NP_001030860.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|332645762|gb|AEE79283.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
Length = 218
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/33 (60%), Positives = 24/33 (72%)
Query: 3 DRPAAERACKDPNPIIDGRKANVNLAILGAKPR 35
D AA RAC+D PII+GR+AN NLA LG + R
Sbjct: 35 DAKAATRACEDSTPIINGRRANCNLASLGGRLR 67
>gi|413943620|gb|AFW76269.1| hypothetical protein ZEAMMB73_511559 [Zea mays]
Length = 172
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/42 (54%), Positives = 28/42 (66%), Gaps = 1/42 (2%)
Query: 3 DRPAAERACKDPNPIIDGRKANVNLAILGAKPRGTLPPGISH 44
D +A AC DP P+IDGR+AN NLAILG +P +P G H
Sbjct: 84 DPESARMACMDPYPVIDGRRANCNLAILG-RPGPAVPFGHQH 124
>gi|413951762|gb|AFW84411.1| hypothetical protein ZEAMMB73_895673 [Zea mays]
Length = 106
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/42 (54%), Positives = 27/42 (64%), Gaps = 2/42 (4%)
Query: 3 DRPAAERACKDPNPIIDGRKANVNLAILGAKPRGTLPPGISH 44
D AA RAC DP P+IDGR+AN NLA LG + + PP H
Sbjct: 66 DSDAAMRACVDPAPVIDGRRANCNLASLGVQR--SRPPTPQH 105
>gi|414879435|tpg|DAA56566.1| TPA: hypothetical protein ZEAMMB73_877814 [Zea mays]
Length = 264
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/31 (64%), Positives = 23/31 (74%)
Query: 3 DRPAAERACKDPNPIIDGRKANVNLAILGAK 33
D AA RAC DP P+IDGR+AN NLA LG +
Sbjct: 66 DPDAAMRACVDPAPVIDGRRANCNLASLGVQ 96
>gi|242055167|ref|XP_002456729.1| hypothetical protein SORBIDRAFT_03g041530 [Sorghum bicolor]
gi|241928704|gb|EES01849.1| hypothetical protein SORBIDRAFT_03g041530 [Sorghum bicolor]
Length = 262
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/31 (64%), Positives = 23/31 (74%)
Query: 3 DRPAAERACKDPNPIIDGRKANVNLAILGAK 33
D AA RAC DP P+IDGR+AN NLA LG +
Sbjct: 66 DPDAAMRACVDPAPVIDGRRANCNLASLGVQ 96
>gi|356552894|ref|XP_003544797.1| PREDICTED: uncharacterized protein LOC100788516 [Glycine max]
Length = 274
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 18/28 (64%), Positives = 22/28 (78%)
Query: 3 DRPAAERACKDPNPIIDGRKANVNLAIL 30
D +A RAC DPNP+IDGR+AN N+A L
Sbjct: 66 DPESARRACADPNPVIDGRRANCNIASL 93
>gi|168035926|ref|XP_001770459.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162678167|gb|EDQ64628.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 89
Score = 45.4 bits (106), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 19/30 (63%), Positives = 24/30 (80%)
Query: 3 DRPAAERACKDPNPIIDGRKANVNLAILGA 32
D +A++AC+D PIIDGR+AN NLA LGA
Sbjct: 55 DSESAKKACEDATPIIDGRRANCNLASLGA 84
>gi|297824761|ref|XP_002880263.1| hypothetical protein ARALYDRAFT_346489 [Arabidopsis lyrata subsp.
lyrata]
gi|297326102|gb|EFH56522.1| hypothetical protein ARALYDRAFT_346489 [Arabidopsis lyrata subsp.
lyrata]
Length = 334
Score = 45.4 bits (106), Expect = 0.005, Method: Composition-based stats.
Identities = 23/36 (63%), Positives = 27/36 (75%), Gaps = 1/36 (2%)
Query: 6 AAERACKDPNPIIDGRKANVNLAILGA-KPRGTLPP 40
AA RAC++ NP+IDGR+AN NLA LGA KPR P
Sbjct: 76 AAMRACQNMNPVIDGRRANCNLACLGAQKPRPPTSP 111
>gi|359492447|ref|XP_003634414.1| PREDICTED: uncharacterized protein LOC100253997 [Vitis vinifera]
gi|302141968|emb|CBI19171.3| unnamed protein product [Vitis vinifera]
Length = 276
Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 18/28 (64%), Positives = 22/28 (78%)
Query: 3 DRPAAERACKDPNPIIDGRKANVNLAIL 30
D +A RAC DPNP+IDGR+AN N+A L
Sbjct: 66 DPESARRACVDPNPVIDGRRANCNIASL 93
>gi|42571735|ref|NP_973958.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|14532532|gb|AAK63994.1| At1g33470/F10C21_14 [Arabidopsis thaliana]
gi|18655391|gb|AAL76151.1| At1g33470/F10C21_14 [Arabidopsis thaliana]
gi|332193476|gb|AEE31597.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
Length = 244
Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 18/31 (58%), Positives = 23/31 (74%)
Query: 3 DRPAAERACKDPNPIIDGRKANVNLAILGAK 33
D AA++AC DP P+IDGR+AN NLA G +
Sbjct: 57 DPEAAQKACVDPAPVIDGRRANCNLAAFGVQ 87
>gi|42562492|ref|NP_174613.2| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|51970938|dbj|BAD44161.1| unknown protein [Arabidopsis thaliana]
gi|332193475|gb|AEE31596.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
Length = 245
Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 18/31 (58%), Positives = 23/31 (74%)
Query: 3 DRPAAERACKDPNPIIDGRKANVNLAILGAK 33
D AA++AC DP P+IDGR+AN NLA G +
Sbjct: 57 DPEAAQKACVDPAPVIDGRRANCNLAAFGVQ 87
>gi|242041311|ref|XP_002468050.1| hypothetical protein SORBIDRAFT_01g038700 [Sorghum bicolor]
gi|241921904|gb|EER95048.1| hypothetical protein SORBIDRAFT_01g038700 [Sorghum bicolor]
Length = 310
Score = 45.1 bits (105), Expect = 0.006, Method: Composition-based stats.
Identities = 21/34 (61%), Positives = 27/34 (79%)
Query: 6 AAERACKDPNPIIDGRKANVNLAILGAKPRGTLP 39
AA++AC+D P+I+GR+AN NLA LGAKPR P
Sbjct: 83 AAKKACEDATPVINGRRANCNLASLGAKPRPQPP 116
>gi|125573383|gb|EAZ14898.1| hypothetical protein OsJ_04828 [Oryza sativa Japonica Group]
Length = 151
Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 29/48 (60%), Gaps = 4/48 (8%)
Query: 5 PAAERACKDPNPIIDGRKANVNLAILGAK----PRGTLPPGISHQRSL 48
AA +AC DP P+IDGR+AN NLA LG + +L P H R++
Sbjct: 73 EAAMKACFDPYPVIDGRRANCNLAYLGVQRSKAAAASLQPYAGHMRAM 120
>gi|297846324|ref|XP_002891043.1| RNA recognition motif-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297336885|gb|EFH67302.1| RNA recognition motif-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 246
Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 18/31 (58%), Positives = 23/31 (74%)
Query: 3 DRPAAERACKDPNPIIDGRKANVNLAILGAK 33
D AA++AC DP P+IDGR+AN NLA G +
Sbjct: 57 DPEAAQKACVDPAPVIDGRRANCNLAAFGVQ 87
>gi|356560235|ref|XP_003548399.1| PREDICTED: polyadenylate-binding protein, cytoplasmic and
nuclear-like [Glycine max]
Length = 351
Score = 45.1 bits (105), Expect = 0.006, Method: Composition-based stats.
Identities = 21/45 (46%), Positives = 28/45 (62%)
Query: 3 DRPAAERACKDPNPIIDGRKANVNLAILGAKPRGTLPPGISHQRS 47
D AA AC++P+PIIDGR+AN N+A +GA T P R+
Sbjct: 168 DPEAAMNACQNPSPIIDGRRANCNIAAIGANKNRTQAPQHGQSRA 212
>gi|240254664|ref|NP_182201.4| RNA-binding (RRM/RBD/RNP motifs) family protein [Arabidopsis
thaliana]
gi|63003880|gb|AAY25469.1| At2g46780 [Arabidopsis thaliana]
gi|330255657|gb|AEC10751.1| RNA-binding (RRM/RBD/RNP motifs) family protein [Arabidopsis
thaliana]
Length = 336
Score = 45.1 bits (105), Expect = 0.006, Method: Composition-based stats.
Identities = 23/36 (63%), Positives = 27/36 (75%), Gaps = 1/36 (2%)
Query: 6 AAERACKDPNPIIDGRKANVNLAILGA-KPRGTLPP 40
AA RAC++ NP+IDGR+AN NLA LGA KPR P
Sbjct: 75 AAMRACQNMNPVIDGRRANCNLACLGAQKPRPPTSP 110
>gi|116787407|gb|ABK24496.1| unknown [Picea sitchensis]
Length = 295
Score = 44.7 bits (104), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 20/31 (64%), Positives = 24/31 (77%)
Query: 3 DRPAAERACKDPNPIIDGRKANVNLAILGAK 33
D +A RAC D +PIIDGR+AN NLA LGA+
Sbjct: 75 DPESAMRACVDSSPIIDGRRANCNLASLGAQ 105
>gi|356544316|ref|XP_003540599.1| PREDICTED: RNA-binding protein 38-like [Glycine max]
Length = 267
Score = 44.7 bits (104), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 19/28 (67%), Positives = 22/28 (78%)
Query: 6 AAERACKDPNPIIDGRKANVNLAILGAK 33
AA RAC DP P+IDGR+AN NLA LG +
Sbjct: 69 AAMRACVDPAPVIDGRRANCNLASLGVQ 96
>gi|356560243|ref|XP_003548403.1| PREDICTED: uncharacterized protein LOC100788899 [Glycine max]
Length = 291
Score = 44.7 bits (104), Expect = 0.007, Method: Composition-based stats.
Identities = 22/42 (52%), Positives = 28/42 (66%), Gaps = 2/42 (4%)
Query: 3 DRPAAERACKDPNPIIDGRKANVNLAILGAKPRGTLPPGISH 44
D +A RAC++P+P+IDGR+AN NLA LGA PP H
Sbjct: 74 DPESAMRACQNPSPVIDGRRANCNLASLGASK--NRPPTFQH 113
>gi|356522484|ref|XP_003529876.1| PREDICTED: uncharacterized protein LOC100786208 [Glycine max]
Length = 296
Score = 44.7 bits (104), Expect = 0.007, Method: Composition-based stats.
Identities = 22/42 (52%), Positives = 28/42 (66%), Gaps = 2/42 (4%)
Query: 3 DRPAAERACKDPNPIIDGRKANVNLAILGAKPRGTLPPGISH 44
D +A RAC++P+P+IDGR+AN NLA LGA PP H
Sbjct: 74 DPESAMRACQNPSPVIDGRRANCNLASLGASK--NRPPTFQH 113
>gi|224100853|ref|XP_002312040.1| predicted protein [Populus trichocarpa]
gi|222851860|gb|EEE89407.1| predicted protein [Populus trichocarpa]
Length = 251
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 21/35 (60%), Positives = 27/35 (77%), Gaps = 1/35 (2%)
Query: 6 AAERACKDPNPIIDGRKANVNLAILGA-KPRGTLP 39
AA +AC+D PII+GR+AN NLA LGA +PR + P
Sbjct: 69 AANKACEDAAPIINGRRANCNLASLGARRPRSSTP 103
>gi|356515780|ref|XP_003526576.1| PREDICTED: protein boule-like [Glycine max]
Length = 287
Score = 44.7 bits (104), Expect = 0.007, Method: Composition-based stats.
Identities = 22/36 (61%), Positives = 27/36 (75%), Gaps = 1/36 (2%)
Query: 6 AAERACKDPNPIIDGRKANVNLAILGAKPRGTLPPG 41
+A RAC DPNPIIDGR+AN N+A LG + R + P G
Sbjct: 91 SARRACADPNPIIDGRRANCNIASLG-RTRPSPPSG 125
>gi|356531720|ref|XP_003534424.1| PREDICTED: RNA-binding protein 38-like [Glycine max]
Length = 266
Score = 44.7 bits (104), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 19/28 (67%), Positives = 22/28 (78%)
Query: 6 AAERACKDPNPIIDGRKANVNLAILGAK 33
AA RAC DP P+IDGR+AN NLA LG +
Sbjct: 69 AAMRACVDPAPVIDGRRANCNLASLGVQ 96
>gi|224128043|ref|XP_002320228.1| predicted protein [Populus trichocarpa]
gi|222861001|gb|EEE98543.1| predicted protein [Populus trichocarpa]
Length = 85
Score = 44.7 bits (104), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 19/31 (61%), Positives = 25/31 (80%)
Query: 3 DRPAAERACKDPNPIIDGRKANVNLAILGAK 33
D AA RAC++P+P+IDGR+AN NLA LG +
Sbjct: 55 DPEAAVRACQNPSPVIDGRRANCNLASLGGQ 85
>gi|255548025|ref|XP_002515069.1| RNA-binding region-containing protein, putative [Ricinus communis]
gi|223545549|gb|EEF47053.1| RNA-binding region-containing protein, putative [Ricinus communis]
Length = 291
Score = 44.7 bits (104), Expect = 0.008, Method: Composition-based stats.
Identities = 23/38 (60%), Positives = 28/38 (73%), Gaps = 1/38 (2%)
Query: 3 DRPAAERACKDPNPIIDGRKANVNLAILGA-KPRGTLP 39
D AA RAC++P+P+IDGR+AN NLA LGA K R P
Sbjct: 74 DPEAAIRACQNPSPVIDGRRANCNLASLGAHKTRSPTP 111
>gi|12322386|gb|AAG51218.1|AC051630_15 RNA-binding protein; 68390-68829 [Arabidopsis thaliana]
Length = 117
Score = 44.3 bits (103), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 18/31 (58%), Positives = 23/31 (74%)
Query: 3 DRPAAERACKDPNPIIDGRKANVNLAILGAK 33
D AA++AC DP P+IDGR+AN NLA G +
Sbjct: 57 DPEAAQKACVDPAPVIDGRRANCNLAAFGVQ 87
>gi|224109676|ref|XP_002315274.1| predicted protein [Populus trichocarpa]
gi|118481097|gb|ABK92502.1| unknown [Populus trichocarpa]
gi|222864314|gb|EEF01445.1| predicted protein [Populus trichocarpa]
Length = 253
Score = 44.3 bits (103), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 20/35 (57%), Positives = 28/35 (80%), Gaps = 1/35 (2%)
Query: 6 AAERACKDPNPIIDGRKANVNLAILGA-KPRGTLP 39
+A++AC+D +PII+GR+AN NLA LGA +PR P
Sbjct: 70 SAKKACEDASPIINGRRANCNLASLGARRPRSATP 104
>gi|357126159|ref|XP_003564756.1| PREDICTED: uncharacterized protein LOC100841513 isoform 1
[Brachypodium distachyon]
Length = 262
Score = 44.3 bits (103), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 19/31 (61%), Positives = 23/31 (74%)
Query: 3 DRPAAERACKDPNPIIDGRKANVNLAILGAK 33
D AA R+C DP P+IDGR+AN NLA LG +
Sbjct: 66 DPDAAMRSCVDPAPVIDGRRANCNLASLGVQ 96
>gi|326524370|dbj|BAK00568.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 265
Score = 44.3 bits (103), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 19/31 (61%), Positives = 23/31 (74%)
Query: 3 DRPAAERACKDPNPIIDGRKANVNLAILGAK 33
D AA R+C DP P+IDGR+AN NLA LG +
Sbjct: 66 DPDAAMRSCVDPAPVIDGRRANCNLASLGVQ 96
>gi|359491921|ref|XP_002273353.2| PREDICTED: uncharacterized protein LOC100258188 [Vitis vinifera]
Length = 346
Score = 44.3 bits (103), Expect = 0.010, Method: Composition-based stats.
Identities = 26/50 (52%), Positives = 32/50 (64%), Gaps = 1/50 (2%)
Query: 3 DRPAAERACKDPNPIIDGRKANVNLAILGAKPRGTLPPGISHQRSLALGS 52
D +A RAC DP PIIDGR+AN NLA LG +PR ++ G + LGS
Sbjct: 82 DPESARRACLDPAPIIDGRRANCNLASLG-RPRPSMSYGRLRPVTPYLGS 130
>gi|356554935|ref|XP_003545796.1| PREDICTED: uncharacterized protein LOC100791707 [Glycine max]
Length = 208
Score = 44.3 bits (103), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 20/28 (71%), Positives = 22/28 (78%)
Query: 6 AAERACKDPNPIIDGRKANVNLAILGAK 33
AA RAC DP P+IDGRKAN NLA LG +
Sbjct: 69 AAMRACVDPAPVIDGRKANYNLASLGVQ 96
>gi|449437302|ref|XP_004136431.1| PREDICTED: uncharacterized protein LOC101207645 [Cucumis sativus]
Length = 277
Score = 43.9 bits (102), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 18/28 (64%), Positives = 22/28 (78%)
Query: 3 DRPAAERACKDPNPIIDGRKANVNLAIL 30
D +A RAC +PNPIIDGR+AN N+A L
Sbjct: 67 DPESARRACANPNPIIDGRRANCNIAAL 94
>gi|413943617|gb|AFW76266.1| hypothetical protein ZEAMMB73_511559 [Zea mays]
Length = 199
Score = 43.9 bits (102), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 19/29 (65%), Positives = 22/29 (75%)
Query: 3 DRPAAERACKDPNPIIDGRKANVNLAILG 31
D +A AC DP P+IDGR+AN NLAILG
Sbjct: 84 DPESARMACMDPYPVIDGRRANCNLAILG 112
>gi|297811255|ref|XP_002873511.1| hypothetical protein ARALYDRAFT_487975 [Arabidopsis lyrata subsp.
lyrata]
gi|297319348|gb|EFH49770.1| hypothetical protein ARALYDRAFT_487975 [Arabidopsis lyrata subsp.
lyrata]
Length = 173
Score = 43.9 bits (102), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 24/31 (77%)
Query: 3 DRPAAERACKDPNPIIDGRKANVNLAILGAK 33
D +A RAC++P P+IDGR+A NLA +GA+
Sbjct: 90 DAESATRACQNPKPVIDGREAKCNLAYIGAR 120
>gi|115448273|ref|NP_001047916.1| Os02g0714000 [Oryza sativa Japonica Group]
gi|113537447|dbj|BAF09830.1| Os02g0714000 [Oryza sativa Japonica Group]
gi|215707046|dbj|BAG93506.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 287
Score = 43.9 bits (102), Expect = 0.012, Method: Composition-based stats.
Identities = 36/113 (31%), Positives = 49/113 (43%), Gaps = 29/113 (25%)
Query: 3 DRPAAERACKDPNPIIDGRKANVNLAILGAK--------------------PRGTLPPGI 42
D +A +AC+DP P+IDGR+AN NLA LG PRG G
Sbjct: 87 DPESARKACEDPTPVIDGRRANCNLASLGRAQPAVPLGRPRSAGSYFGVPVPRGVYVGGY 146
Query: 43 SHQRSLALGSNDFEYTGWPSFLMIYVHMGSILTF---EFNPFL--KPYPISGI 90
R+L LG Y G+P Y G+ + NP++ + PI G+
Sbjct: 147 GQHRTLPLGY----YQGFPVPQYSYTTYGTEYIYPQGTLNPYVGQQYVPIYGV 195
>gi|15238805|ref|NP_200179.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|9759062|dbj|BAB09540.1| unnamed protein product [Arabidopsis thaliana]
gi|332009011|gb|AED96394.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
Length = 169
Score = 43.9 bits (102), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 19/31 (61%), Positives = 22/31 (70%)
Query: 3 DRPAAERACKDPNPIIDGRKANVNLAILGAK 33
D +A RACKDPNP I+GR N LA +GAK
Sbjct: 63 DAESATRACKDPNPTIEGRITNCKLAFVGAK 93
>gi|359486705|ref|XP_002278641.2| PREDICTED: uncharacterized protein LOC100265113 [Vitis vinifera]
Length = 254
Score = 43.9 bits (102), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 22/43 (51%), Positives = 29/43 (67%), Gaps = 1/43 (2%)
Query: 6 AAERACKDPNPIIDGRKANVNLAILGA-KPRGTLPPGISHQRS 47
AA++AC+D P+I+GR+AN NLA LGA +PR HQ S
Sbjct: 69 AAKKACEDATPMINGRRANCNLASLGARRPRSAASSTPPHQGS 111
>gi|449520505|ref|XP_004167274.1| PREDICTED: DAZ-associated protein 1-like [Cucumis sativus]
Length = 192
Score = 43.9 bits (102), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 18/28 (64%), Positives = 22/28 (78%)
Query: 3 DRPAAERACKDPNPIIDGRKANVNLAIL 30
D +A RAC +PNPIIDGR+AN N+A L
Sbjct: 67 DPESARRACANPNPIIDGRRANCNIAAL 94
>gi|357120047|ref|XP_003561742.1| PREDICTED: uncharacterized protein LOC100843530 [Brachypodium
distachyon]
Length = 307
Score = 43.9 bits (102), Expect = 0.012, Method: Composition-based stats.
Identities = 20/30 (66%), Positives = 26/30 (86%)
Query: 6 AAERACKDPNPIIDGRKANVNLAILGAKPR 35
AA++AC+D P+I+GR+AN NLA LGAKPR
Sbjct: 73 AAKKACEDGTPVINGRRANCNLASLGAKPR 102
>gi|296086078|emb|CBI31519.3| unnamed protein product [Vitis vinifera]
Length = 216
Score = 43.9 bits (102), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 22/43 (51%), Positives = 29/43 (67%), Gaps = 1/43 (2%)
Query: 6 AAERACKDPNPIIDGRKANVNLAILGA-KPRGTLPPGISHQRS 47
AA++AC+D P+I+GR+AN NLA LGA +PR HQ S
Sbjct: 38 AAKKACEDATPMINGRRANCNLASLGARRPRSAASSTPPHQGS 80
>gi|255553947|ref|XP_002518014.1| RNA binding protein, putative [Ricinus communis]
gi|223542996|gb|EEF44532.1| RNA binding protein, putative [Ricinus communis]
Length = 267
Score = 43.9 bits (102), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 18/31 (58%), Positives = 23/31 (74%)
Query: 3 DRPAAERACKDPNPIIDGRKANVNLAILGAK 33
+ AA RAC D +P+IDGR+AN NLA LG +
Sbjct: 69 EAEAARRACVDSSPVIDGRRANCNLASLGVQ 99
>gi|359806944|ref|NP_001241070.1| uncharacterized protein LOC100788634 [Glycine max]
gi|255635629|gb|ACU18164.1| unknown [Glycine max]
Length = 253
Score = 43.9 bits (102), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 31/47 (65%), Gaps = 3/47 (6%)
Query: 3 DRPAAERACKDPNPIIDGRKANVNLAILGAKPRGTLPPGISHQRSLA 49
D +A RAC +P P+IDGR+AN NLA LGA+ P I+ ++ L+
Sbjct: 74 DPNSAIRACHNPYPVIDGRRANCNLAALGAQ---KFDPSITGRQKLS 117
>gi|218198571|gb|EEC80998.1| hypothetical protein OsI_23744 [Oryza sativa Indica Group]
Length = 309
Score = 43.5 bits (101), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 25/52 (48%), Positives = 31/52 (59%), Gaps = 4/52 (7%)
Query: 3 DRPAAERACKDPNPIIDGRKANVNLAILG----AKPRGTLPPGISHQRSLAL 50
D +A AC DP P+IDGR+AN NLAILG A P L P I + +A+
Sbjct: 83 DPDSARMACMDPYPVIDGRRANCNLAILGRPGPAMPFAPLRPVIPYNGGVAV 134
>gi|413954774|gb|AFW87423.1| hypothetical protein ZEAMMB73_842369 [Zea mays]
Length = 203
Score = 43.5 bits (101), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 19/29 (65%), Positives = 22/29 (75%)
Query: 3 DRPAAERACKDPNPIIDGRKANVNLAILG 31
D +A AC DP P+IDGR+AN NLAILG
Sbjct: 89 DPESARMACMDPYPVIDGRRANCNLAILG 117
>gi|357123817|ref|XP_003563604.1| PREDICTED: uncharacterized protein LOC100823039 [Brachypodium
distachyon]
Length = 282
Score = 43.5 bits (101), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 19/29 (65%), Positives = 22/29 (75%)
Query: 3 DRPAAERACKDPNPIIDGRKANVNLAILG 31
D +A AC DP P+IDGR+AN NLAILG
Sbjct: 92 DPESARMACMDPYPVIDGRRANCNLAILG 120
>gi|238006540|gb|ACR34305.1| unknown [Zea mays]
gi|413938540|gb|AFW73091.1| RNA-binding region-containing protein 1 [Zea mays]
Length = 283
Score = 43.5 bits (101), Expect = 0.014, Method: Composition-based stats.
Identities = 20/36 (55%), Positives = 28/36 (77%), Gaps = 1/36 (2%)
Query: 6 AAERACKDPNPIIDGRKANVNLAILGAKPRGTLPPG 41
+A +AC+DP P+IDGR+AN NLA LG + + +PPG
Sbjct: 85 SASKACEDPTPVIDGRRANCNLASLG-RAQHPVPPG 119
>gi|449525794|ref|XP_004169901.1| PREDICTED: uncharacterized protein LOC101231499 [Cucumis sativus]
Length = 266
Score = 43.5 bits (101), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 33/51 (64%)
Query: 3 DRPAAERACKDPNPIIDGRKANVNLAILGAKPRGTLPPGISHQRSLALGSN 53
D +A++AC+D PII+GR+AN NLA LGA+ G+ + ++ GSN
Sbjct: 76 DAESAKKACEDSAPIINGRRANCNLASLGARRGGSRSASATPPQAPQPGSN 126
>gi|449451717|ref|XP_004143608.1| PREDICTED: uncharacterized protein LOC101202850 [Cucumis sativus]
Length = 266
Score = 43.5 bits (101), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 33/51 (64%)
Query: 3 DRPAAERACKDPNPIIDGRKANVNLAILGAKPRGTLPPGISHQRSLALGSN 53
D +A++AC+D PII+GR+AN NLA LGA+ G+ + ++ GSN
Sbjct: 76 DAESAKKACEDSAPIINGRRANCNLASLGARRGGSRSASATPPQAPQPGSN 126
>gi|147802334|emb|CAN65953.1| hypothetical protein VITISV_026758 [Vitis vinifera]
Length = 195
Score = 43.5 bits (101), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 18/28 (64%), Positives = 22/28 (78%)
Query: 3 DRPAAERACKDPNPIIDGRKANVNLAIL 30
D +A RAC DPNP+IDGR+AN N+A L
Sbjct: 66 DPESARRACVDPNPVIDGRRANCNIASL 93
>gi|356516138|ref|XP_003526753.1| PREDICTED: uncharacterized protein LOC100799072 [Glycine max]
Length = 246
Score = 43.5 bits (101), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 19/31 (61%), Positives = 24/31 (77%)
Query: 3 DRPAAERACKDPNPIIDGRKANVNLAILGAK 33
D +A RAC +P P+IDGR+AN NLA LGA+
Sbjct: 66 DPNSAIRACHNPYPVIDGRRANCNLAALGAQ 96
>gi|224061833|ref|XP_002300621.1| predicted protein [Populus trichocarpa]
gi|222842347|gb|EEE79894.1| predicted protein [Populus trichocarpa]
Length = 287
Score = 43.5 bits (101), Expect = 0.016, Method: Composition-based stats.
Identities = 22/34 (64%), Positives = 25/34 (73%), Gaps = 1/34 (2%)
Query: 6 AAERACKDPNPIIDGRKANVNLAILGAKPRGTLP 39
AA RAC DP P+IDGR+AN NLA LG +PR P
Sbjct: 85 AARRACADPTPMIDGRRANCNLASLG-RPRPPQP 117
>gi|226503435|ref|NP_001145815.1| uncharacterized protein LOC100279322 [Zea mays]
gi|219884531|gb|ACL52640.1| unknown [Zea mays]
gi|238014728|gb|ACR38399.1| unknown [Zea mays]
gi|413943618|gb|AFW76267.1| hypothetical protein ZEAMMB73_511559 [Zea mays]
gi|413943619|gb|AFW76268.1| hypothetical protein ZEAMMB73_511559 [Zea mays]
Length = 279
Score = 43.5 bits (101), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 19/29 (65%), Positives = 22/29 (75%)
Query: 3 DRPAAERACKDPNPIIDGRKANVNLAILG 31
D +A AC DP P+IDGR+AN NLAILG
Sbjct: 84 DPESARMACMDPYPVIDGRRANCNLAILG 112
>gi|226528122|ref|NP_001150704.1| LOC100284337 [Zea mays]
gi|195641226|gb|ACG40081.1| RNA-binding region-containing protein 1 [Zea mays]
Length = 283
Score = 43.5 bits (101), Expect = 0.017, Method: Composition-based stats.
Identities = 20/36 (55%), Positives = 28/36 (77%), Gaps = 1/36 (2%)
Query: 6 AAERACKDPNPIIDGRKANVNLAILGAKPRGTLPPG 41
+A +AC+DP P+IDGR+AN NLA LG + + +PPG
Sbjct: 85 SASKACEDPTPVIDGRRANCNLASLG-RAQHPVPPG 119
>gi|115469006|ref|NP_001058102.1| Os06g0622900 [Oryza sativa Japonica Group]
gi|51090851|dbj|BAD35379.1| putative SEB4D [Oryza sativa Japonica Group]
gi|51091028|dbj|BAD35670.1| putative SEB4D [Oryza sativa Japonica Group]
gi|113596142|dbj|BAF20016.1| Os06g0622900 [Oryza sativa Japonica Group]
Length = 275
Score = 43.5 bits (101), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 19/29 (65%), Positives = 22/29 (75%)
Query: 3 DRPAAERACKDPNPIIDGRKANVNLAILG 31
D +A AC DP P+IDGR+AN NLAILG
Sbjct: 83 DPDSARMACMDPYPVIDGRRANCNLAILG 111
>gi|326518012|dbj|BAK07258.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 275
Score = 43.1 bits (100), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 19/29 (65%), Positives = 22/29 (75%)
Query: 3 DRPAAERACKDPNPIIDGRKANVNLAILG 31
D +A AC DP P+IDGR+AN NLAILG
Sbjct: 84 DPDSARMACMDPYPVIDGRRANCNLAILG 112
>gi|51535080|dbj|BAD37669.1| putative RRM-containing protein [Oryza sativa Japonica Group]
gi|51535381|dbj|BAD37252.1| putative RRM-containing protein [Oryza sativa Japonica Group]
gi|125596523|gb|EAZ36303.1| hypothetical protein OsJ_20624 [Oryza sativa Japonica Group]
gi|215765073|dbj|BAG86770.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 343
Score = 43.1 bits (100), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 23/45 (51%), Positives = 27/45 (60%), Gaps = 5/45 (11%)
Query: 6 AAERACKDPNPIIDGRKANVNLAILG-----AKPRGTLPPGISHQ 45
AA RA +DPNP+I GR+AN N+A LG PRG PG Q
Sbjct: 92 AARRAVQDPNPMIAGRRANCNIASLGPPRPAQPPRGRASPGAQFQ 136
>gi|222635905|gb|EEE66037.1| hypothetical protein OsJ_22014 [Oryza sativa Japonica Group]
Length = 309
Score = 43.1 bits (100), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 19/29 (65%), Positives = 22/29 (75%)
Query: 3 DRPAAERACKDPNPIIDGRKANVNLAILG 31
D +A AC DP P+IDGR+AN NLAILG
Sbjct: 83 DPDSARMACMDPYPVIDGRRANCNLAILG 111
>gi|115442349|ref|NP_001045454.1| Os01g0958500 [Oryza sativa Japonica Group]
gi|57900099|dbj|BAD88161.1| RNA recognition motif (RRM)-containing protein-like [Oryza sativa
Japonica Group]
gi|57900279|dbj|BAD87112.1| RNA recognition motif (RRM)-containing protein-like [Oryza sativa
Japonica Group]
gi|113534985|dbj|BAF07368.1| Os01g0958500 [Oryza sativa Japonica Group]
gi|215706363|dbj|BAG93219.1| unnamed protein product [Oryza sativa Japonica Group]
gi|218189772|gb|EEC72199.1| hypothetical protein OsI_05278 [Oryza sativa Indica Group]
Length = 310
Score = 43.1 bits (100), Expect = 0.019, Method: Composition-based stats.
Identities = 22/47 (46%), Positives = 29/47 (61%), Gaps = 4/47 (8%)
Query: 6 AAERACKDPNPIIDGRKANVNLAILGAK----PRGTLPPGISHQRSL 48
AA +AC DP P+IDGR+AN NLA LG + +L P H R++
Sbjct: 74 AAMKACFDPYPVIDGRRANCNLAYLGVQRSKAAAASLQPYAGHMRAM 120
>gi|413951763|gb|AFW84412.1| hypothetical protein ZEAMMB73_895673 [Zea mays]
Length = 290
Score = 43.1 bits (100), Expect = 0.019, Method: Composition-based stats.
Identities = 23/42 (54%), Positives = 27/42 (64%), Gaps = 2/42 (4%)
Query: 3 DRPAAERACKDPNPIIDGRKANVNLAILGAKPRGTLPPGISH 44
D AA RAC DP P+IDGR+AN NLA LG + + PP H
Sbjct: 66 DSDAAMRACVDPAPVIDGRRANCNLASLGVQR--SRPPTPQH 105
>gi|255539422|ref|XP_002510776.1| RNA-binding region-containing protein, putative [Ricinus
communis]
gi|223551477|gb|EEF52963.1| RNA-binding region-containing protein, putative [Ricinus
communis]
Length = 259
Score = 43.1 bits (100), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 19/31 (61%), Positives = 22/31 (70%)
Query: 3 DRPAAERACKDPNPIIDGRKANVNLAILGAK 33
D AA RAC D P+IDGR+AN NLA LG +
Sbjct: 66 DPEAAMRACVDSAPVIDGRRANCNLASLGVQ 96
>gi|449532815|ref|XP_004173374.1| PREDICTED: RNA-binding protein 38-like [Cucumis sativus]
Length = 272
Score = 43.1 bits (100), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 18/28 (64%), Positives = 22/28 (78%)
Query: 6 AAERACKDPNPIIDGRKANVNLAILGAK 33
AA RAC D +P+IDGR+AN NLA LG +
Sbjct: 69 AAMRACVDASPVIDGRRANCNLASLGVQ 96
>gi|118482964|gb|ABK93394.1| unknown [Populus trichocarpa]
Length = 294
Score = 43.1 bits (100), Expect = 0.021, Method: Composition-based stats.
Identities = 22/42 (52%), Positives = 28/42 (66%), Gaps = 2/42 (4%)
Query: 3 DRPAAERACKDPNPIIDGRKANVNLAILGAKPRGTLPPGISH 44
D AA RAC++P+P+IDGR+AN NLA LG + PP H
Sbjct: 75 DPEAAVRACQNPSPVIDGRRANCNLASLGGQK--NRPPTPQH 114
>gi|222624555|gb|EEE58687.1| hypothetical protein OsJ_10122 [Oryza sativa Japonica Group]
Length = 245
Score = 43.1 bits (100), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 19/33 (57%), Positives = 22/33 (66%)
Query: 3 DRPAAERACKDPNPIIDGRKANVNLAILGAKPR 35
D A RA +DP P+IDGR+AN NLA GA R
Sbjct: 58 DPDGAARALQDPTPVIDGRRANCNLAAFGAARR 90
>gi|168018647|ref|XP_001761857.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162686912|gb|EDQ73298.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 89
Score = 43.1 bits (100), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 19/30 (63%), Positives = 22/30 (73%)
Query: 3 DRPAAERACKDPNPIIDGRKANVNLAILGA 32
D +A +AC D PIIDGR+AN NLA LGA
Sbjct: 55 DAESARKACVDATPIIDGRRANCNLASLGA 84
>gi|224126549|ref|XP_002319865.1| predicted protein [Populus trichocarpa]
gi|222858241|gb|EEE95788.1| predicted protein [Populus trichocarpa]
Length = 266
Score = 43.1 bits (100), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 18/28 (64%), Positives = 22/28 (78%)
Query: 6 AAERACKDPNPIIDGRKANVNLAILGAK 33
AA RAC D +P+IDGR+AN NLA LG +
Sbjct: 69 AAMRACVDASPVIDGRRANCNLASLGVQ 96
>gi|255545750|ref|XP_002513935.1| RNA-binding region-containing protein, putative [Ricinus
communis]
gi|223547021|gb|EEF48518.1| RNA-binding region-containing protein, putative [Ricinus
communis]
Length = 261
Score = 42.7 bits (99), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 17/28 (60%), Positives = 22/28 (78%)
Query: 3 DRPAAERACKDPNPIIDGRKANVNLAIL 30
D +A RAC +PNP+IDGR+AN N+A L
Sbjct: 63 DPESARRACVNPNPVIDGRRANCNIASL 90
>gi|125554582|gb|EAZ00188.1| hypothetical protein OsI_22192 [Oryza sativa Indica Group]
Length = 318
Score = 42.7 bits (99), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 23/45 (51%), Positives = 27/45 (60%), Gaps = 5/45 (11%)
Query: 6 AAERACKDPNPIIDGRKANVNLAILG-----AKPRGTLPPGISHQ 45
AA RA +DPNP+I GR+AN N+A LG PRG PG Q
Sbjct: 69 AARRAVQDPNPMIAGRRANCNIASLGPPRPAQPPRGRASPGAQFQ 113
>gi|297845256|ref|XP_002890509.1| hypothetical protein ARALYDRAFT_313119 [Arabidopsis lyrata subsp.
lyrata]
gi|297336351|gb|EFH66768.1| hypothetical protein ARALYDRAFT_313119 [Arabidopsis lyrata subsp.
lyrata]
Length = 291
Score = 42.7 bits (99), Expect = 0.027, Method: Composition-based stats.
Identities = 21/36 (58%), Positives = 26/36 (72%), Gaps = 1/36 (2%)
Query: 6 AAERACKDPNPIIDGRKANVNLAILGAKPRGTLPPG 41
+A RA DPNP+IDGRKAN N+A G +PR + P G
Sbjct: 70 SATRAVADPNPVIDGRKANCNIASFG-RPRPSTPRG 104
>gi|449447713|ref|XP_004141612.1| PREDICTED: uncharacterized protein LOC101221767 [Cucumis sativus]
Length = 274
Score = 42.7 bits (99), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 18/28 (64%), Positives = 22/28 (78%)
Query: 6 AAERACKDPNPIIDGRKANVNLAILGAK 33
AA RAC D +P+IDGR+AN NLA LG +
Sbjct: 69 AAMRACVDASPVIDGRRANCNLASLGVQ 96
>gi|297789286|ref|XP_002862625.1| hypothetical protein ARALYDRAFT_920469 [Arabidopsis lyrata subsp.
lyrata]
gi|297792763|ref|XP_002864266.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297308263|gb|EFH38883.1| hypothetical protein ARALYDRAFT_920469 [Arabidopsis lyrata subsp.
lyrata]
gi|297310101|gb|EFH40525.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 222
Score = 42.7 bits (99), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 19/31 (61%), Positives = 21/31 (67%)
Query: 3 DRPAAERACKDPNPIIDGRKANVNLAILGAK 33
D +A ACK+PNP IDGR N LA LGAK
Sbjct: 62 DAESARNACKNPNPTIDGRVTNCKLASLGAK 92
>gi|255565834|ref|XP_002523906.1| RNA-binding region-containing protein, putative [Ricinus
communis]
gi|223536836|gb|EEF38475.1| RNA-binding region-containing protein, putative [Ricinus
communis]
Length = 256
Score = 42.7 bits (99), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 17/28 (60%), Positives = 24/28 (85%)
Query: 6 AAERACKDPNPIIDGRKANVNLAILGAK 33
AA++AC+D P+I+GR+AN NLA LGA+
Sbjct: 69 AAKKACEDATPMINGRRANCNLASLGAR 96
>gi|116830329|gb|ABK28122.1| unknown [Arabidopsis thaliana]
Length = 176
Score = 42.7 bits (99), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 23/31 (74%)
Query: 3 DRPAAERACKDPNPIIDGRKANVNLAILGAK 33
D +A RAC++P P+IDGR+A NLA +G +
Sbjct: 102 DAESATRACQNPKPVIDGREAKCNLAYIGGR 132
>gi|186522130|ref|NP_001119208.1| RNA-binding (RRM/RBD/RNP motifs) family protein [Arabidopsis
thaliana]
gi|98962267|gb|ABF59463.1| unknown protein [Arabidopsis thaliana]
gi|332004292|gb|AED91675.1| RNA-binding (RRM/RBD/RNP motifs) family protein [Arabidopsis
thaliana]
Length = 175
Score = 42.4 bits (98), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 23/31 (74%)
Query: 3 DRPAAERACKDPNPIIDGRKANVNLAILGAK 33
D +A RAC++P P+IDGR+A NLA +G +
Sbjct: 102 DAESATRACQNPKPVIDGREAKCNLAYIGGR 132
>gi|414879434|tpg|DAA56565.1| TPA: hypothetical protein ZEAMMB73_877814 [Zea mays]
Length = 295
Score = 42.4 bits (98), Expect = 0.032, Method: Composition-based stats.
Identities = 23/42 (54%), Positives = 27/42 (64%), Gaps = 2/42 (4%)
Query: 3 DRPAAERACKDPNPIIDGRKANVNLAILGAKPRGTLPPGISH 44
D AA RAC DP P+IDGR+AN NLA LG + + PP H
Sbjct: 66 DPDAAMRACVDPAPVIDGRRANCNLASLGVQR--SRPPTPQH 105
>gi|108707149|gb|ABF94944.1| RNA-binding region containing protein 1, putative [Oryza sativa
Japonica Group]
Length = 134
Score = 42.4 bits (98), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 33/65 (50%), Gaps = 3/65 (4%)
Query: 3 DRPAAERACKDPNPIIDGRKANVNLAILGAKPR---GTLPPGISHQRSLALGSNDFEYTG 59
D A RA +DP P+IDGR+AN NLA GA R P G++ R + S+
Sbjct: 58 DPDGAARALQDPTPVIDGRRANCNLAAFGAARRVHPVAAPFGMARLRPAMIASSSSYQGS 117
Query: 60 WPSFL 64
PS+
Sbjct: 118 APSYF 122
>gi|56784732|dbj|BAD81881.1| putative RRM-containing protein SEB-4 [Oryza sativa Japonica Group]
gi|56784856|dbj|BAD82096.1| putative RRM-containing protein SEB-4 [Oryza sativa Japonica Group]
gi|125528575|gb|EAY76689.1| hypothetical protein OsI_04643 [Oryza sativa Indica Group]
gi|125572838|gb|EAZ14353.1| hypothetical protein OsJ_04273 [Oryza sativa Japonica Group]
Length = 300
Score = 42.4 bits (98), Expect = 0.034, Method: Composition-based stats.
Identities = 23/42 (54%), Positives = 27/42 (64%), Gaps = 2/42 (4%)
Query: 3 DRPAAERACKDPNPIIDGRKANVNLAILGAKPRGTLPPGISH 44
D AA RAC DP P+IDGR+AN NLA LG + + PP H
Sbjct: 66 DPDAAMRACVDPAPVIDGRRANCNLASLGVQR--SRPPTPQH 105
>gi|357470725|ref|XP_003605647.1| RNA-binding protein [Medicago truncatula]
gi|355506702|gb|AES87844.1| RNA-binding protein [Medicago truncatula]
Length = 267
Score = 42.4 bits (98), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 19/28 (67%), Positives = 21/28 (75%)
Query: 6 AAERACKDPNPIIDGRKANVNLAILGAK 33
AA RAC D PIIDGR+AN NLA LG +
Sbjct: 69 AAMRACVDAAPIIDGRRANCNLASLGVQ 96
>gi|357470723|ref|XP_003605646.1| RNA-binding protein [Medicago truncatula]
gi|355506701|gb|AES87843.1| RNA-binding protein [Medicago truncatula]
Length = 272
Score = 42.0 bits (97), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 19/28 (67%), Positives = 21/28 (75%)
Query: 6 AAERACKDPNPIIDGRKANVNLAILGAK 33
AA RAC D PIIDGR+AN NLA LG +
Sbjct: 69 AAMRACVDAAPIIDGRRANCNLASLGVQ 96
>gi|225459959|ref|XP_002266779.1| PREDICTED: RNA-binding protein 38 [Vitis vinifera]
gi|297734754|emb|CBI16988.3| unnamed protein product [Vitis vinifera]
Length = 264
Score = 42.0 bits (97), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 18/28 (64%), Positives = 21/28 (75%)
Query: 6 AAERACKDPNPIIDGRKANVNLAILGAK 33
AA RAC D P+IDGR+AN NLA LG +
Sbjct: 69 AAMRACVDAAPVIDGRRANCNLASLGVQ 96
>gi|147798190|emb|CAN73746.1| hypothetical protein VITISV_041364 [Vitis vinifera]
Length = 269
Score = 42.0 bits (97), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 18/28 (64%), Positives = 21/28 (75%)
Query: 6 AAERACKDPNPIIDGRKANVNLAILGAK 33
AA RAC D P+IDGR+AN NLA LG +
Sbjct: 69 AAMRACVDAAPVIDGRRANCNLASLGVQ 96
>gi|357124772|ref|XP_003564071.1| PREDICTED: uncharacterized protein LOC100841108 [Brachypodium
distachyon]
Length = 291
Score = 42.0 bits (97), Expect = 0.043, Method: Composition-based stats.
Identities = 24/44 (54%), Positives = 28/44 (63%), Gaps = 4/44 (9%)
Query: 6 AAERACKDPNPIIDGRKANVNLAILG----AKPRGTLPPGISHQ 45
AA RA +DPNP I GR+AN N+A LG A+PRG PG Q
Sbjct: 76 AARRAVQDPNPTITGRRANCNIASLGPPRPAQPRGRASPGAHLQ 119
>gi|326503278|dbj|BAJ99264.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 299
Score = 42.0 bits (97), Expect = 0.046, Method: Composition-based stats.
Identities = 23/40 (57%), Positives = 27/40 (67%), Gaps = 4/40 (10%)
Query: 6 AAERACKDPNPIIDGRKANVNLAILG----AKPRGTLPPG 41
AA RA +DPNP I GR+AN N+A LG A+PRG PG
Sbjct: 75 AARRAVEDPNPTITGRRANCNIASLGPPRPAQPRGRPSPG 114
>gi|293332557|ref|NP_001169821.1| uncharacterized protein LOC100383713 [Zea mays]
gi|224031839|gb|ACN34995.1| unknown [Zea mays]
gi|413944112|gb|AFW76761.1| RNA-binding region-containing protein 1 [Zea mays]
Length = 332
Score = 41.6 bits (96), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 21/34 (61%), Positives = 24/34 (70%), Gaps = 1/34 (2%)
Query: 6 AAERACKDPNPIIDGRKANVNLAILGAKPRGTLP 39
AA RA +DPNP I GR+AN N+A LG PR T P
Sbjct: 83 AARRAVQDPNPTIAGRRANCNIASLG-PPRPTQP 115
>gi|357489687|ref|XP_003615131.1| RNA-binding protein [Medicago truncatula]
gi|355516466|gb|AES98089.1| RNA-binding protein [Medicago truncatula]
Length = 283
Score = 41.6 bits (96), Expect = 0.055, Method: Composition-based stats.
Identities = 18/28 (64%), Positives = 22/28 (78%)
Query: 3 DRPAAERACKDPNPIIDGRKANVNLAIL 30
D +A RAC DPNP+IDGR+AN N+A L
Sbjct: 66 DPESARRACADPNPVIDGRRANCNIASL 93
>gi|224063243|ref|XP_002301058.1| predicted protein [Populus trichocarpa]
gi|222842784|gb|EEE80331.1| predicted protein [Populus trichocarpa]
Length = 90
Score = 41.6 bits (96), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 17/29 (58%), Positives = 22/29 (75%)
Query: 3 DRPAAERACKDPNPIIDGRKANVNLAILG 31
D +A RAC + NP+IDGR+AN N+A LG
Sbjct: 62 DPESARRACAERNPVIDGRRANCNIASLG 90
>gi|242055633|ref|XP_002456962.1| hypothetical protein SORBIDRAFT_03g046430 [Sorghum bicolor]
gi|241928937|gb|EES02082.1| hypothetical protein SORBIDRAFT_03g046430 [Sorghum bicolor]
Length = 334
Score = 41.2 bits (95), Expect = 0.069, Method: Composition-based stats.
Identities = 20/32 (62%), Positives = 22/32 (68%)
Query: 6 AAERACKDPNPIIDGRKANVNLAILGAKPRGT 37
AA RAC DP P+IDGR+AN NLA LG T
Sbjct: 75 AALRACIDPYPVIDGRRANCNLAYLGVNKSKT 106
>gi|223942527|gb|ACN25347.1| unknown [Zea mays]
Length = 190
Score = 41.2 bits (95), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 17/22 (77%), Positives = 19/22 (86%)
Query: 10 ACKDPNPIIDGRKANVNLAILG 31
AC DP P+IDGR+AN NLAILG
Sbjct: 2 ACMDPYPVIDGRRANCNLAILG 23
>gi|297845326|ref|XP_002890544.1| hypothetical protein ARALYDRAFT_889804 [Arabidopsis lyrata subsp.
lyrata]
gi|297336386|gb|EFH66803.1| hypothetical protein ARALYDRAFT_889804 [Arabidopsis lyrata subsp.
lyrata]
Length = 252
Score = 41.2 bits (95), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 22/31 (70%)
Query: 3 DRPAAERACKDPNPIIDGRKANVNLAILGAK 33
+ AA RAC + P+IDGR+AN NLA LG +
Sbjct: 63 EAEAARRACVEATPVIDGRRANCNLASLGLQ 93
>gi|357126161|ref|XP_003564757.1| PREDICTED: uncharacterized protein LOC100841513 isoform 2
[Brachypodium distachyon]
Length = 293
Score = 41.2 bits (95), Expect = 0.087, Method: Composition-based stats.
Identities = 22/42 (52%), Positives = 27/42 (64%), Gaps = 2/42 (4%)
Query: 3 DRPAAERACKDPNPIIDGRKANVNLAILGAKPRGTLPPGISH 44
D AA R+C DP P+IDGR+AN NLA LG + + PP H
Sbjct: 66 DPDAAMRSCVDPAPVIDGRRANCNLASLGVQR--SRPPTPQH 105
>gi|42572157|ref|NP_974169.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|110736924|dbj|BAF00419.1| hypothetical protein [Arabidopsis thaliana]
gi|332197967|gb|AEE36088.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
Length = 271
Score = 40.8 bits (94), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 16/23 (69%), Positives = 19/23 (82%)
Query: 6 AAERACKDPNPIIDGRKANVNLA 28
+A RA DPNP+IDGRKAN N+A
Sbjct: 70 SATRAVADPNPVIDGRKANCNIA 92
>gi|388492860|gb|AFK34496.1| unknown [Medicago truncatula]
Length = 256
Score = 40.8 bits (94), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 25/31 (80%)
Query: 3 DRPAAERACKDPNPIIDGRKANVNLAILGAK 33
D +A++AC++P II+GR+AN N+A LGA+
Sbjct: 68 DADSAKKACEEPTVIINGRRANCNIASLGAR 98
>gi|308080714|ref|NP_001183079.1| uncharacterized protein LOC100501435 [Zea mays]
gi|238009230|gb|ACR35650.1| unknown [Zea mays]
gi|413923675|gb|AFW63607.1| hypothetical protein ZEAMMB73_900660 [Zea mays]
Length = 331
Score = 40.8 bits (94), Expect = 0.094, Method: Composition-based stats.
Identities = 17/26 (65%), Positives = 22/26 (84%)
Query: 6 AAERACKDPNPIIDGRKANVNLAILG 31
+A +AC+DP P+IDGR+AN NLA LG
Sbjct: 133 SARKACEDPTPVIDGRRANCNLASLG 158
>gi|357137279|ref|XP_003570228.1| PREDICTED: uncharacterized protein LOC100833583 [Brachypodium
distachyon]
Length = 288
Score = 40.8 bits (94), Expect = 0.095, Method: Composition-based stats.
Identities = 27/66 (40%), Positives = 33/66 (50%), Gaps = 9/66 (13%)
Query: 3 DRPAAERACKDPNPIIDGRKANVNLAILGAKPRGTLPPGISHQRSLALGSNDFEYTGWPS 62
D +A +AC+DP P+IDGR+ N NLA LG R P + RS Y G P
Sbjct: 87 DPESATKACEDPTPVIDGRRGNCNLASLG---RAQTPAHLGRPRSAG------SYFGVPV 137
Query: 63 FLMIYV 68
IYV
Sbjct: 138 PRGIYV 143
>gi|224127746|ref|XP_002329167.1| predicted protein [Populus trichocarpa]
gi|222870948|gb|EEF08079.1| predicted protein [Populus trichocarpa]
Length = 194
Score = 40.8 bits (94), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 17/28 (60%), Positives = 21/28 (75%)
Query: 6 AAERACKDPNPIIDGRKANVNLAILGAK 33
AA RAC D P+IDGR+AN NLA +G +
Sbjct: 69 AAMRACVDAAPVIDGRRANCNLASMGVQ 96
>gi|42571597|ref|NP_973889.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|332192187|gb|AEE30308.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
Length = 347
Score = 40.8 bits (94), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 21/31 (67%)
Query: 3 DRPAAERACKDPNPIIDGRKANVNLAILGAK 33
+ AA AC D P+IDGR+AN NLA LG +
Sbjct: 63 EAEAARSACVDATPVIDGRRANCNLASLGLQ 93
>gi|2462825|gb|AAB72160.1| unknown [Arabidopsis thaliana]
Length = 340
Score = 40.4 bits (93), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 21/31 (67%)
Query: 3 DRPAAERACKDPNPIIDGRKANVNLAILGAK 33
+ AA AC D P+IDGR+AN NLA LG +
Sbjct: 78 EAEAARSACVDATPVIDGRRANCNLASLGLQ 108
>gi|413938949|gb|AFW73500.1| hypothetical protein ZEAMMB73_228737 [Zea mays]
Length = 175
Score = 40.4 bits (93), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 20/38 (52%), Positives = 26/38 (68%), Gaps = 4/38 (10%)
Query: 3 DRPAAERACKDPNPIIDGRKANVNLAILG----AKPRG 36
D AA RA ++PNP+I GR+AN N+A G A+PRG
Sbjct: 97 DPDAAARAVQNPNPVIAGRRANCNIAAFGPPRAAQPRG 134
>gi|413923673|gb|AFW63605.1| hypothetical protein ZEAMMB73_900660 [Zea mays]
gi|413923674|gb|AFW63606.1| hypothetical protein ZEAMMB73_900660 [Zea mays]
Length = 290
Score = 40.4 bits (93), Expect = 0.14, Method: Composition-based stats.
Identities = 17/26 (65%), Positives = 22/26 (84%)
Query: 6 AAERACKDPNPIIDGRKANVNLAILG 31
+A +AC+DP P+IDGR+AN NLA LG
Sbjct: 92 SARKACEDPTPVIDGRRANCNLASLG 117
>gi|42571595|ref|NP_973888.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|332192185|gb|AEE30306.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
Length = 242
Score = 40.4 bits (93), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 21/31 (67%)
Query: 3 DRPAAERACKDPNPIIDGRKANVNLAILGAK 33
+ AA AC D P+IDGR+AN NLA LG +
Sbjct: 63 EAEAARSACVDATPVIDGRRANCNLASLGLQ 93
>gi|18395177|ref|NP_564184.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|13605871|gb|AAK32921.1|AF367334_1 At1g22910/F19G10_13 [Arabidopsis thaliana]
gi|16323282|gb|AAL15396.1| At1g22910/F19G10_13 [Arabidopsis thaliana]
gi|332192186|gb|AEE30307.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
Length = 249
Score = 40.0 bits (92), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 17/28 (60%), Positives = 20/28 (71%)
Query: 6 AAERACKDPNPIIDGRKANVNLAILGAK 33
AA AC D P+IDGR+AN NLA LG +
Sbjct: 66 AARSACVDATPVIDGRRANCNLASLGLQ 93
>gi|226501312|ref|NP_001146912.1| RNA-binding region-containing protein 1 [Zea mays]
gi|195605124|gb|ACG24392.1| RNA-binding region-containing protein 1 [Zea mays]
Length = 339
Score = 40.0 bits (92), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 17/26 (65%), Positives = 20/26 (76%)
Query: 6 AAERACKDPNPIIDGRKANVNLAILG 31
AA RA +DPNP I GR+AN N+A LG
Sbjct: 83 AARRAVQDPNPTIAGRRANCNIASLG 108
>gi|356566044|ref|XP_003551245.1| PREDICTED: RNA-binding protein 24-like [Glycine max]
Length = 207
Score = 40.0 bits (92), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 19/28 (67%), Positives = 20/28 (71%)
Query: 6 AAERACKDPNPIIDGRKANVNLAILGAK 33
AA RAC DP PIID KAN NLA LG +
Sbjct: 110 AAMRACVDPAPIIDDGKANCNLASLGVQ 137
>gi|326489011|dbj|BAJ98117.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 228
Score = 39.3 bits (90), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 38/69 (55%), Gaps = 8/69 (11%)
Query: 3 DRPAAERACKDPNPIIDGRKANVNLAILGAKPRGTLPPGISHQRSLA-LGSNDFEYTGWP 61
D +A++A ++PNP+I GR+AN N+A +G PP S QR A G + +G P
Sbjct: 14 DPESAQQAVQNPNPMIAGRRANCNIASMG-------PPRPSPQRGRAPRGPDQQPSSGPP 66
Query: 62 SFLMIYVHM 70
++ +H
Sbjct: 67 PYMGGRMHQ 75
>gi|413954775|gb|AFW87424.1| hypothetical protein ZEAMMB73_842369 [Zea mays]
gi|413954776|gb|AFW87425.1| hypothetical protein ZEAMMB73_842369 [Zea mays]
Length = 284
Score = 39.3 bits (90), Expect = 0.29, Method: Composition-based stats.
Identities = 21/37 (56%), Positives = 26/37 (70%), Gaps = 1/37 (2%)
Query: 3 DRPAAERACKDPNPIIDGRKANVNLAILGAKPRGTLP 39
D +A AC DP P+IDGR+AN NLAILG +P +P
Sbjct: 89 DPESARMACMDPYPVIDGRRANCNLAILG-RPGPAVP 124
>gi|15238826|ref|NP_200183.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|9759066|dbj|BAB09544.1| unnamed protein product [Arabidopsis thaliana]
gi|332009015|gb|AED96398.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
Length = 100
Score = 39.3 bits (90), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 17/35 (48%), Positives = 21/35 (60%)
Query: 5 PAAERACKDPNPIIDGRKANVNLAILGAKPRGTLP 39
+A RAC++PN IDGR N LA LGA+ P
Sbjct: 61 ESATRACENPNHTIDGRTVNCKLAYLGARVHNYQP 95
>gi|413954777|gb|AFW87426.1| hypothetical protein ZEAMMB73_842369 [Zea mays]
Length = 283
Score = 39.3 bits (90), Expect = 0.30, Method: Composition-based stats.
Identities = 21/37 (56%), Positives = 26/37 (70%), Gaps = 1/37 (2%)
Query: 3 DRPAAERACKDPNPIIDGRKANVNLAILGAKPRGTLP 39
D +A AC DP P+IDGR+AN NLAILG +P +P
Sbjct: 89 DPESARMACMDPYPVIDGRRANCNLAILG-RPGPAVP 124
>gi|413938951|gb|AFW73502.1| hypothetical protein ZEAMMB73_228737 [Zea mays]
Length = 321
Score = 39.3 bits (90), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 19/37 (51%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
Query: 3 DRPAAERACKDPNPIIDGRKANVNLAILGAKPRGTLP 39
D AA RA ++PNP+I GR+AN N+A G PR P
Sbjct: 97 DPDAAARAVQNPNPVIAGRRANCNIAAFG-PPRAAQP 132
>gi|413938950|gb|AFW73501.1| hypothetical protein ZEAMMB73_228737 [Zea mays]
Length = 318
Score = 39.3 bits (90), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 19/37 (51%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
Query: 3 DRPAAERACKDPNPIIDGRKANVNLAILGAKPRGTLP 39
D AA RA ++PNP+I GR+AN N+A G PR P
Sbjct: 97 DPDAAARAVQNPNPVIAGRRANCNIAAFG-PPRAAQP 132
>gi|449469853|ref|XP_004152633.1| PREDICTED: uncharacterized protein LOC101221584 [Cucumis sativus]
Length = 276
Score = 38.9 bits (89), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 16/28 (57%), Positives = 20/28 (71%)
Query: 3 DRPAAERACKDPNPIIDGRKANVNLAIL 30
D +A RAC +PNPII GR+AN N+A
Sbjct: 72 DPESARRACANPNPIICGRRANCNIAAF 99
>gi|242096402|ref|XP_002438691.1| hypothetical protein SORBIDRAFT_10g024450 [Sorghum bicolor]
gi|241916914|gb|EER90058.1| hypothetical protein SORBIDRAFT_10g024450 [Sorghum bicolor]
Length = 286
Score = 38.5 bits (88), Expect = 0.53, Method: Composition-based stats.
Identities = 20/34 (58%), Positives = 25/34 (73%), Gaps = 1/34 (2%)
Query: 6 AAERACKDPNPIIDGRKANVNLAILGAKPRGTLP 39
+A AC DP P+IDGR+AN NLAILG +P +P
Sbjct: 93 SARMACMDPYPVIDGRRANCNLAILG-RPGPAVP 125
>gi|297792767|ref|XP_002864268.1| RNA recognition motif-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297310103|gb|EFH40527.1| RNA recognition motif-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 100
Score = 38.1 bits (87), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 21/35 (60%)
Query: 5 PAAERACKDPNPIIDGRKANVNLAILGAKPRGTLP 39
+A RAC++PN + DGR N +A LGA+ P
Sbjct: 61 ESATRACENPNHVTDGRTVNCKIAYLGARIHNNQP 95
>gi|357464147|ref|XP_003602355.1| RNA-binding protein 24-B [Medicago truncatula]
gi|355491403|gb|AES72606.1| RNA-binding protein 24-B [Medicago truncatula]
Length = 250
Score = 38.1 bits (87), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 15/25 (60%), Positives = 19/25 (76%)
Query: 10 ACKDPNPIIDGRKANVNLAILGAKP 34
AC++PNP+IDGR+AN NLA P
Sbjct: 83 ACQNPNPMIDGRRANCNLAYQKPDP 107
>gi|115464425|ref|NP_001055812.1| Os05g0471000 [Oryza sativa Japonica Group]
gi|51038148|gb|AAT93951.1| unknown protein [Oryza sativa Japonica Group]
gi|51038208|gb|AAT94011.1| unknown protein [Oryza sativa Japonica Group]
gi|113579363|dbj|BAF17726.1| Os05g0471000 [Oryza sativa Japonica Group]
gi|215695491|dbj|BAG90682.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 624
Score = 37.7 bits (86), Expect = 0.83, Method: Composition-based stats.
Identities = 28/71 (39%), Positives = 37/71 (52%), Gaps = 7/71 (9%)
Query: 19 DGRKANVNLAILGAKPRGTLPPGI---SHQRSLALGSNDFEYTGWPSFLMIYVHMGSILT 75
DGR +NL LG K G LP I +H RS+ L +N F Y P+ M Y+H +L
Sbjct: 70 DGRVVALNLPNLGLK--GMLPQEIGTLAHMRSIILHNNSF-YGIIPT-EMKYLHELKVLD 125
Query: 76 FEFNPFLKPYP 86
+N F P+P
Sbjct: 126 LGYNTFSGPFP 136
>gi|449503982|ref|XP_004162245.1| PREDICTED: RNA-binding protein 24-B-like [Cucumis sativus]
Length = 159
Score = 37.7 bits (86), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 16/28 (57%), Positives = 20/28 (71%)
Query: 3 DRPAAERACKDPNPIIDGRKANVNLAIL 30
D +A RAC +PNPII GR+AN N+A
Sbjct: 72 DPESARRACANPNPIICGRRANCNIAAF 99
>gi|222631922|gb|EEE64054.1| hypothetical protein OsJ_18883 [Oryza sativa Japonica Group]
Length = 593
Score = 37.7 bits (86), Expect = 0.85, Method: Composition-based stats.
Identities = 28/71 (39%), Positives = 37/71 (52%), Gaps = 7/71 (9%)
Query: 19 DGRKANVNLAILGAKPRGTLPPGI---SHQRSLALGSNDFEYTGWPSFLMIYVHMGSILT 75
DGR +NL LG K G LP I +H RS+ L +N F Y P+ M Y+H +L
Sbjct: 70 DGRVVALNLPNLGLK--GMLPQEIGTLAHMRSIILHNNSF-YGIIPT-EMKYLHELKVLD 125
Query: 76 FEFNPFLKPYP 86
+N F P+P
Sbjct: 126 LGYNTFSGPFP 136
>gi|218196958|gb|EEC79385.1| hypothetical protein OsI_20299 [Oryza sativa Indica Group]
Length = 624
Score = 37.7 bits (86), Expect = 0.86, Method: Composition-based stats.
Identities = 28/71 (39%), Positives = 37/71 (52%), Gaps = 7/71 (9%)
Query: 19 DGRKANVNLAILGAKPRGTLPPGI---SHQRSLALGSNDFEYTGWPSFLMIYVHMGSILT 75
DGR +NL LG K G LP I +H RS+ L +N F Y P+ M Y+H +L
Sbjct: 70 DGRVVALNLPNLGLK--GMLPQEIGTLAHMRSIILHNNSF-YGIIPT-EMKYLHELKVLD 125
Query: 76 FEFNPFLKPYP 86
+N F P+P
Sbjct: 126 LGYNTFSGPFP 136
>gi|8052542|gb|AAF71806.1|AC013430_15 F3F9.20 [Arabidopsis thaliana]
Length = 302
Score = 37.4 bits (85), Expect = 1.0, Method: Composition-based stats.
Identities = 16/23 (69%), Positives = 19/23 (82%)
Query: 6 AAERACKDPNPIIDGRKANVNLA 28
+A RA DPNP+IDGRKAN N+A
Sbjct: 70 SATRAVADPNPVIDGRKANCNIA 92
>gi|18411885|ref|NP_565175.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|21537200|gb|AAM61541.1| RNA recognition motif-containing protein SEB-4 [Arabidopsis
thaliana]
gi|124300976|gb|ABN04740.1| At1g78260 [Arabidopsis thaliana]
gi|332197966|gb|AEE36087.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
Length = 287
Score = 37.4 bits (85), Expect = 1.0, Method: Composition-based stats.
Identities = 16/23 (69%), Positives = 19/23 (82%)
Query: 6 AAERACKDPNPIIDGRKANVNLA 28
+A RA DPNP+IDGRKAN N+A
Sbjct: 70 SATRAVADPNPVIDGRKANCNIA 92
>gi|297839699|ref|XP_002887731.1| hypothetical protein ARALYDRAFT_476993 [Arabidopsis lyrata subsp.
lyrata]
gi|297333572|gb|EFH63990.1| hypothetical protein ARALYDRAFT_476993 [Arabidopsis lyrata subsp.
lyrata]
Length = 285
Score = 37.4 bits (85), Expect = 1.2, Method: Composition-based stats.
Identities = 16/23 (69%), Positives = 19/23 (82%)
Query: 6 AAERACKDPNPIIDGRKANVNLA 28
+A RA DPNP+IDGRKAN N+A
Sbjct: 70 SATRAVADPNPVIDGRKANCNIA 92
>gi|357120096|ref|XP_003561766.1| PREDICTED: uncharacterized protein LOC100826001 [Brachypodium
distachyon]
Length = 445
Score = 36.6 bits (83), Expect = 1.9, Method: Composition-based stats.
Identities = 19/45 (42%), Positives = 27/45 (60%), Gaps = 7/45 (15%)
Query: 3 DRPAAERACKDPNPIIDGRKANVNLAILGAKPRGTLPPGISHQRS 47
D +A +A ++PNP+I GR+AN N+A +G PP S RS
Sbjct: 91 DPESARQAVQNPNPMIAGRRANCNIASMG-------PPCPSPHRS 128
>gi|356562111|ref|XP_003549317.1| PREDICTED: uncharacterized protein LOC100782522 [Glycine max]
Length = 165
Score = 36.6 bits (83), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 19/32 (59%), Positives = 25/32 (78%), Gaps = 2/32 (6%)
Query: 6 AAERACKDPNP-IIDGRKANVNLAILGA-KPR 35
AA++AC+D II+GR+AN NLA LGA +PR
Sbjct: 56 AAKKACEDSTTLIINGRRANYNLAFLGAHRPR 87
>gi|297833470|ref|XP_002884617.1| hypothetical protein ARALYDRAFT_317559 [Arabidopsis lyrata subsp.
lyrata]
gi|297330457|gb|EFH60876.1| hypothetical protein ARALYDRAFT_317559 [Arabidopsis lyrata subsp.
lyrata]
Length = 320
Score = 36.6 bits (83), Expect = 2.1, Method: Composition-based stats.
Identities = 17/37 (45%), Positives = 21/37 (56%)
Query: 3 DRPAAERACKDPNPIIDGRKANVNLAILGAKPRGTLP 39
D +A RA ++P P+IDGR N NLA L K P
Sbjct: 65 DAVSAARALENPRPVIDGRTTNCNLASLRVKQNMNQP 101
>gi|357138050|ref|XP_003570611.1| PREDICTED: uncharacterized protein LOC100846923 [Brachypodium
distachyon]
Length = 315
Score = 36.2 bits (82), Expect = 2.3, Method: Composition-based stats.
Identities = 20/45 (44%), Positives = 28/45 (62%), Gaps = 7/45 (15%)
Query: 3 DRPAAERACKDPNPIIDGRKANVNLAILGAKPRGTLPPGISHQRS 47
D +A +A ++PNP+I GR+AN N+A +G PP S QRS
Sbjct: 90 DPESARQAVQNPNPVIAGRRANCNIASMG-------PPRPSPQRS 127
>gi|222623699|gb|EEE57831.1| hypothetical protein OsJ_08433 [Oryza sativa Japonica Group]
Length = 329
Score = 36.2 bits (82), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 26/48 (54%), Gaps = 9/48 (18%)
Query: 6 AAERACKDPNPIIDGRKANVNLAILGA---------KPRGTLPPGISH 44
+A A ++PNP I GR+AN N+A +G PRG+L P H
Sbjct: 99 SAREAVRNPNPTIGGRRANCNIASMGPPRPSPSRGRAPRGSLFPDQPH 146
>gi|226507294|ref|NP_001146341.1| uncharacterized protein LOC100279918 [Zea mays]
gi|219886705|gb|ACL53727.1| unknown [Zea mays]
Length = 321
Score = 36.2 bits (82), Expect = 2.9, Method: Composition-based stats.
Identities = 19/37 (51%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
Query: 3 DRPAAERACKDPNPIIDGRKANVNLAILGAKPRGTLP 39
D AA RA ++PNP+I GR+AN N+A G PR P
Sbjct: 97 DPDAAARAVQNPNPVIAGRRANCNIAAFGP-PRAAQP 132
>gi|116787064|gb|ABK24360.1| unknown [Picea sitchensis]
Length = 365
Score = 35.8 bits (81), Expect = 3.2, Method: Composition-based stats.
Identities = 18/40 (45%), Positives = 22/40 (55%)
Query: 6 AAERACKDPNPIIDGRKANVNLAILGAKPRGTLPPGISHQ 45
A +RA K+PN IDGR V LA G K + P +S Q
Sbjct: 212 ATKRALKEPNKTIDGRTVTVKLAADGQKEKPQSQPAVSPQ 251
>gi|448330638|ref|ZP_21519917.1| hypothetical protein C489_15846 [Natrinema versiforme JCM 10478]
gi|445611142|gb|ELY64902.1| hypothetical protein C489_15846 [Natrinema versiforme JCM 10478]
Length = 821
Score = 35.8 bits (81), Expect = 3.3, Method: Composition-based stats.
Identities = 16/44 (36%), Positives = 21/44 (47%)
Query: 38 LPPGISHQRSLALGSNDFEYTGWPSFLMIYVHMGSILTFEFNPF 81
LP G+SH+ + N FE GW +F + V G NPF
Sbjct: 462 LPQGLSHEEKVEYAQNAFELMGWTAFARLVVFAGHASETTNNPF 505
>gi|448336461|ref|ZP_21525560.1| hypothetical protein C487_02216 [Natrinema pallidum DSM 3751]
gi|445629201|gb|ELY82495.1| hypothetical protein C487_02216 [Natrinema pallidum DSM 3751]
Length = 816
Score = 35.8 bits (81), Expect = 3.5, Method: Composition-based stats.
Identities = 17/46 (36%), Positives = 21/46 (45%)
Query: 36 GTLPPGISHQRSLALGSNDFEYTGWPSFLMIYVHMGSILTFEFNPF 81
G LP G+SH+ + N FE GW F + V G NPF
Sbjct: 460 GDLPHGLSHEAKVEYARNAFELMGWTEFARLVVFAGHASETTNNPF 505
>gi|115448765|ref|NP_001048162.1| Os02g0755400 [Oryza sativa Japonica Group]
gi|113537693|dbj|BAF10076.1| Os02g0755400 [Oryza sativa Japonica Group]
gi|215741191|dbj|BAG97686.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 176
Score = 35.4 bits (80), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 26/48 (54%), Gaps = 9/48 (18%)
Query: 6 AAERACKDPNPIIDGRKANVNLAIL---------GAKPRGTLPPGISH 44
+A A ++PNP I GR+AN N+A + G PRG+L P H
Sbjct: 99 SAREAVRNPNPTIGGRRANCNIASMGPPRPSPSRGRAPRGSLFPDQPH 146
>gi|326487203|dbj|BAJ89586.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 316
Score = 35.4 bits (80), Expect = 4.3, Method: Composition-based stats.
Identities = 20/49 (40%), Positives = 30/49 (61%), Gaps = 4/49 (8%)
Query: 3 DRPAAERACKDPNPIIDGRKANVNLAILG----AKPRGTLPPGISHQRS 47
D +A++A ++PNP+I GR+AN N+A +G + RG P G Q S
Sbjct: 102 DPESAQQAVQNPNPMIAGRRANCNIASMGPPRPSPQRGRAPRGPDQQPS 150
>gi|453084446|gb|EMF12490.1| WSC-domain-containing protein [Mycosphaerella populorum SO2202]
Length = 1852
Score = 35.4 bits (80), Expect = 4.4, Method: Composition-based stats.
Identities = 18/52 (34%), Positives = 25/52 (48%)
Query: 25 VNLAILGAKPRGTLPPGISHQRSLALGSNDFEYTGWPSFLMIYVHMGSILTF 76
V+ + PR G HQR L D+ YTGW S + Y + G+I+ F
Sbjct: 199 VDGTVFRNNPRRMFIGGNQHQRPALLQVGDYIYTGWASHCIQYNYTGAIIGF 250
>gi|293334341|ref|NP_001168036.1| hypothetical protein [Zea mays]
gi|223945619|gb|ACN26893.1| unknown [Zea mays]
gi|413924498|gb|AFW64430.1| hypothetical protein ZEAMMB73_796534 [Zea mays]
Length = 292
Score = 35.4 bits (80), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Query: 6 AAERACKDPNPIIDGRKANVNLAILGAKPRGTLP 39
AA A ++PNP+I GR+AN N+A G PR P
Sbjct: 80 AAALAVQNPNPVIAGRRANCNIAAFG-PPRTAQP 112
>gi|448347105|ref|ZP_21535984.1| hypothetical protein C485_14990 [Natrinema altunense JCM 12890]
gi|445631442|gb|ELY84674.1| hypothetical protein C485_14990 [Natrinema altunense JCM 12890]
Length = 818
Score = 35.0 bits (79), Expect = 6.0, Method: Composition-based stats.
Identities = 16/44 (36%), Positives = 20/44 (45%)
Query: 38 LPPGISHQRSLALGSNDFEYTGWPSFLMIYVHMGSILTFEFNPF 81
LP G+SH+ + N FE GW F + V G NPF
Sbjct: 464 LPQGLSHEEKVEYAQNAFELMGWTEFARLVVFAGHASETTNNPF 507
>gi|397772017|ref|YP_006539563.1| hypothetical protein NJ7G_0232 [Natrinema sp. J7-2]
gi|397681110|gb|AFO55487.1| hypothetical protein NJ7G_0232 [Natrinema sp. J7-2]
Length = 816
Score = 34.7 bits (78), Expect = 6.7, Method: Composition-based stats.
Identities = 16/44 (36%), Positives = 20/44 (45%)
Query: 38 LPPGISHQRSLALGSNDFEYTGWPSFLMIYVHMGSILTFEFNPF 81
LP G+SH+ + N FE GW F + V G NPF
Sbjct: 462 LPQGLSHEAKVEYAQNAFELMGWTEFARLVVFAGHASETTNNPF 505
>gi|448342551|ref|ZP_21531499.1| hypothetical protein C486_12837 [Natrinema gari JCM 14663]
gi|445625306|gb|ELY78668.1| hypothetical protein C486_12837 [Natrinema gari JCM 14663]
Length = 816
Score = 34.7 bits (78), Expect = 6.8, Method: Composition-based stats.
Identities = 16/44 (36%), Positives = 20/44 (45%)
Query: 38 LPPGISHQRSLALGSNDFEYTGWPSFLMIYVHMGSILTFEFNPF 81
LP G+SH+ + N FE GW F + V G NPF
Sbjct: 462 LPQGLSHEAKVEYAQNAFELMGWTEFARLVVFAGHASETTNNPF 505
>gi|448383917|ref|ZP_21562915.1| hypothetical protein C478_11110, partial [Haloterrigena
thermotolerans DSM 11522]
gi|445658906|gb|ELZ11718.1| hypothetical protein C478_11110, partial [Haloterrigena
thermotolerans DSM 11522]
Length = 454
Score = 34.7 bits (78), Expect = 7.0, Method: Composition-based stats.
Identities = 16/44 (36%), Positives = 20/44 (45%)
Query: 38 LPPGISHQRSLALGSNDFEYTGWPSFLMIYVHMGSILTFEFNPF 81
LP G+SH+ + N FE GW F + V G NPF
Sbjct: 96 LPQGLSHEAKVEYARNAFELMGWTEFARLVVFTGHASETTNNPF 139
>gi|218191605|gb|EEC74032.1| hypothetical protein OsI_08988 [Oryza sativa Indica Group]
Length = 322
Score = 34.7 bits (78), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 19/26 (73%)
Query: 6 AAERACKDPNPIIDGRKANVNLAILG 31
+A A ++PNP I GR+AN N+A +G
Sbjct: 99 SAREAVRNPNPTIGGRRANCNIASMG 124
>gi|405969003|gb|EKC34018.1| Glutamate synthase [NADH], amyloplastic [Crassostrea gigas]
Length = 2212
Score = 34.7 bits (78), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 38/86 (44%), Gaps = 13/86 (15%)
Query: 2 GDRPAAERACKDPNPIIDGRKANVNLAILGAKPR----------GTLPPGISHQRSLALG 51
G + ER C D P+IDGR + G KP+ ++ PG + R +G
Sbjct: 78 GSSSSLERVCDD-TPVIDGRGFPIQYKSAGIKPQEFPVIGFHVDESICPGFRY-RVRYMG 135
Query: 52 SNDFEYTGWPSFLM-IYVHMGSILTF 76
S DF + G P L I + G LTF
Sbjct: 136 SKDFLFNGEPRMLQSIGLGYGKRLTF 161
>gi|433592824|ref|YP_007282320.1| hypothetical protein Natpe_3651 [Natrinema pellirubrum DSM 15624]
gi|448335269|ref|ZP_21524419.1| hypothetical protein C488_17703 [Natrinema pellirubrum DSM 15624]
gi|433307604|gb|AGB33416.1| hypothetical protein Natpe_3651 [Natrinema pellirubrum DSM 15624]
gi|445617650|gb|ELY71244.1| hypothetical protein C488_17703 [Natrinema pellirubrum DSM 15624]
Length = 819
Score = 34.3 bits (77), Expect = 9.4, Method: Composition-based stats.
Identities = 16/44 (36%), Positives = 20/44 (45%)
Query: 38 LPPGISHQRSLALGSNDFEYTGWPSFLMIYVHMGSILTFEFNPF 81
LP G+SH+ + N FE GW F + V G NPF
Sbjct: 460 LPQGMSHEAKVEYARNAFELMGWTEFARLVVFTGHASETTNNPF 503
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.322 0.142 0.447
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,655,809,586
Number of Sequences: 23463169
Number of extensions: 64705148
Number of successful extensions: 125548
Number of sequences better than 100.0: 356
Number of HSP's better than 100.0 without gapping: 345
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 125202
Number of HSP's gapped (non-prelim): 357
length of query: 94
length of database: 8,064,228,071
effective HSP length: 64
effective length of query: 30
effective length of database: 6,562,585,255
effective search space: 196877557650
effective search space used: 196877557650
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 69 (31.2 bits)