BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy16924
         (94 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2CQD|A Chain A, Solution Structure Of The Rna Recognition Motif In Rna-
           Binding Region Containing Protein 1
          Length = 116

 Score = 70.1 bits (170), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 32/35 (91%), Positives = 32/35 (91%)

Query: 1   MGDRPAAERACKDPNPIIDGRKANVNLAILGAKPR 35
           M DR AAERACKDPNPIIDGRKANVNLA LGAKPR
Sbjct: 66  MADRAAAERACKDPNPIIDGRKANVNLAYLGAKPR 100


>pdb|3B3Q|A Chain A, Crystal Structure Of A Synaptic Adhesion Complex
 pdb|3B3Q|B Chain B, Crystal Structure Of A Synaptic Adhesion Complex
          Length = 577

 Score = 25.8 bits (55), Expect = 6.3,   Method: Composition-based stats.
 Identities = 22/78 (28%), Positives = 31/78 (39%), Gaps = 7/78 (8%)

Query: 4   RPAAERACKDPNPIIDGRKANVNLAILGAKPRGTLPPGISHQRSLALGSN-------DFE 56
           R A + A   P  IIDGR   V L +        +   +  Q    L  N       D  
Sbjct: 79  RNATQFAPVCPQNIIDGRLPEVMLPVWFTNNLDVVSSYVQDQSEDCLYLNIYVPTEDDIR 138

Query: 57  YTGWPSFLMIYVHMGSIL 74
            +G P  +M+Y+H GS +
Sbjct: 139 DSGGPKPVMVYIHGGSYM 156


>pdb|3BIW|A Chain A, Crystal Structure Of The Neuroligin-1NEUREXIN-1beta
           Synaptic Adhesion Complex
 pdb|3BIW|B Chain B, Crystal Structure Of The Neuroligin-1NEUREXIN-1beta
           Synaptic Adhesion Complex
 pdb|3BIW|C Chain C, Crystal Structure Of The Neuroligin-1NEUREXIN-1beta
           Synaptic Adhesion Complex
 pdb|3BIW|D Chain D, Crystal Structure Of The Neuroligin-1NEUREXIN-1beta
           Synaptic Adhesion Complex
 pdb|3BIX|A Chain A, Crystal Structure Of The Extracellular Esterase Domain Of
           Neuroligin-1
 pdb|3BIX|B Chain B, Crystal Structure Of The Extracellular Esterase Domain Of
           Neuroligin-1
 pdb|3BIX|C Chain C, Crystal Structure Of The Extracellular Esterase Domain Of
           Neuroligin-1
 pdb|3BIX|D Chain D, Crystal Structure Of The Extracellular Esterase Domain Of
           Neuroligin-1
          Length = 574

 Score = 25.8 bits (55), Expect = 6.3,   Method: Composition-based stats.
 Identities = 22/78 (28%), Positives = 31/78 (39%), Gaps = 7/78 (8%)

Query: 4   RPAAERACKDPNPIIDGRKANVNLAILGAKPRGTLPPGISHQRSLALGSN-------DFE 56
           R A + A   P  IIDGR   V L +        +   +  Q    L  N       D  
Sbjct: 66  RNATQFAPVCPQNIIDGRLPEVMLPVWFTNNLDVVSSYVQDQSEDCLYLNIYVPTEDDIR 125

Query: 57  YTGWPSFLMIYVHMGSIL 74
            +G P  +M+Y+H GS +
Sbjct: 126 DSGGPKPVMVYIHGGSYM 143


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.322    0.142    0.447 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,068,548
Number of Sequences: 62578
Number of extensions: 115471
Number of successful extensions: 228
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 227
Number of HSP's gapped (non-prelim): 4
length of query: 94
length of database: 14,973,337
effective HSP length: 61
effective length of query: 33
effective length of database: 11,156,079
effective search space: 368150607
effective search space used: 368150607
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 45 (21.9 bits)