BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy16924
(94 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9I8B3|RB24B_XENLA RNA-binding protein 24-B OS=Xenopus laevis GN=rbm24-b PE=2 SV=1
Length = 224
Score = 71.6 bits (174), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 34/43 (79%), Positives = 36/43 (83%), Gaps = 1/43 (2%)
Query: 1 MGDRPAAERACKDPNPIIDGRKANVNLAILGAKPRGTLPPGIS 43
M DR AAERACKDPNPIIDGRKANVNLA LGAKPR + PG +
Sbjct: 59 MADRAAAERACKDPNPIIDGRKANVNLAYLGAKPR-IMQPGFA 100
>sp|Q5ZJX4|RBM38_CHICK RNA-binding protein 38 OS=Gallus gallus GN=RBM38 PE=2 SV=1
Length = 215
Score = 71.2 bits (173), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 32/35 (91%), Positives = 32/35 (91%)
Query: 1 MGDRPAAERACKDPNPIIDGRKANVNLAILGAKPR 35
M DR AAERACKDPNPIIDGRKANVNLA LGAKPR
Sbjct: 59 MADRAAAERACKDPNPIIDGRKANVNLAYLGAKPR 93
>sp|Q6P8A7|RBM24_XENTR RNA-binding protein 24 OS=Xenopus tropicalis GN=rbm24 PE=2 SV=1
Length = 226
Score = 71.2 bits (173), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 34/43 (79%), Positives = 36/43 (83%), Gaps = 1/43 (2%)
Query: 1 MGDRPAAERACKDPNPIIDGRKANVNLAILGAKPRGTLPPGIS 43
M DR AAERACKDPNPIIDGRKANVNLA LGAKPR + PG +
Sbjct: 59 MADRAAAERACKDPNPIIDGRKANVNLAYLGAKPR-IMQPGFA 100
>sp|D3Z4I3|RBM24_MOUSE RNA-binding protein 24 OS=Mus musculus GN=Rbm24 PE=3 SV=1
Length = 236
Score = 71.2 bits (173), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 34/43 (79%), Positives = 36/43 (83%), Gaps = 1/43 (2%)
Query: 1 MGDRPAAERACKDPNPIIDGRKANVNLAILGAKPRGTLPPGIS 43
M DR AAERACKDPNPIIDGRKANVNLA LGAKPR + PG +
Sbjct: 59 MADRAAAERACKDPNPIIDGRKANVNLAYLGAKPR-IMQPGFA 100
>sp|Q9BX46|RBM24_HUMAN RNA-binding protein 24 OS=Homo sapiens GN=RBM24 PE=1 SV=1
Length = 236
Score = 71.2 bits (173), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 34/43 (79%), Positives = 36/43 (83%), Gaps = 1/43 (2%)
Query: 1 MGDRPAAERACKDPNPIIDGRKANVNLAILGAKPRGTLPPGIS 43
M DR AAERACKDPNPIIDGRKANVNLA LGAKPR + PG +
Sbjct: 59 MADRAAAERACKDPNPIIDGRKANVNLAYLGAKPR-IMQPGFA 100
>sp|Q7T3I7|RBM38_XENLA RNA-binding protein 38 OS=Xenopus laevis GN=rbm38 PE=1 SV=2
Length = 214
Score = 71.2 bits (173), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 32/35 (91%), Positives = 32/35 (91%)
Query: 1 MGDRPAAERACKDPNPIIDGRKANVNLAILGAKPR 35
M DR AAERACKDPNPIIDGRKANVNLA LGAKPR
Sbjct: 59 MSDRAAAERACKDPNPIIDGRKANVNLAYLGAKPR 93
>sp|Q6DIV4|RBM38_XENTR RNA-binding protein 38 OS=Xenopus tropicalis GN=rbm38 PE=2 SV=1
Length = 219
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 32/35 (91%), Positives = 32/35 (91%)
Query: 1 MGDRPAAERACKDPNPIIDGRKANVNLAILGAKPR 35
M DR AAERACKDPNPIIDGRKANVNLA LGAKPR
Sbjct: 59 MSDRAAAERACKDPNPIIDGRKANVNLAYLGAKPR 93
>sp|Q6GQD3|RB24A_XENLA RNA-binding protein 24-A OS=Xenopus laevis GN=rbm24-a PE=2 SV=1
Length = 225
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 34/43 (79%), Positives = 36/43 (83%), Gaps = 1/43 (2%)
Query: 1 MGDRPAAERACKDPNPIIDGRKANVNLAILGAKPRGTLPPGIS 43
M DR AAERACKDPNPIIDGRKANVNLA LGAKPR + PG +
Sbjct: 59 MADRAAAERACKDPNPIIDGRKANVNLAYLGAKPR-IMQPGFA 100
>sp|Q5ZMA3|RBM24_CHICK RNA-binding protein 24 OS=Gallus gallus GN=RBM24 PE=2 SV=2
Length = 225
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 34/43 (79%), Positives = 36/43 (83%), Gaps = 1/43 (2%)
Query: 1 MGDRPAAERACKDPNPIIDGRKANVNLAILGAKPRGTLPPGIS 43
M DR AAERACKDPNPIIDGRKANVNLA LGAKPR + PG +
Sbjct: 59 MADRAAAERACKDPNPIIDGRKANVNLAYLGAKPR-IMQPGFA 100
>sp|Q9H0Z9|RBM38_HUMAN RNA-binding protein 38 OS=Homo sapiens GN=RBM38 PE=1 SV=2
Length = 239
Score = 70.5 bits (171), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 37/58 (63%), Positives = 38/58 (65%), Gaps = 7/58 (12%)
Query: 1 MGDRPAAERACKDPNPIIDGRKANVNLAILGAKPRGTLPPGISHQRSLALGSNDFEYT 58
M DR AAERACKDPNPIIDGRKANVNLA LGAKPR S Q A+G T
Sbjct: 82 MADRAAAERACKDPNPIIDGRKANVNLAYLGAKPR-------SLQTGFAIGVQQLHPT 132
>sp|Q76LC6|RBM24_DANRE RNA-binding protein 24 OS=Danio rerio GN=rbm24 PE=2 SV=1
Length = 230
Score = 70.5 bits (171), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 36/43 (83%), Gaps = 1/43 (2%)
Query: 1 MGDRPAAERACKDPNPIIDGRKANVNLAILGAKPRGTLPPGIS 43
M DR AA+RACKDPNPIIDGRKANVNLA LGAKPR + PG +
Sbjct: 59 MADRSAADRACKDPNPIIDGRKANVNLAYLGAKPR-VMQPGFT 100
>sp|Q62176|RBM38_MOUSE RNA-binding protein 38 OS=Mus musculus GN=Rbm38 PE=1 SV=2
Length = 237
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 24/25 (96%), Positives = 24/25 (96%)
Query: 11 CKDPNPIIDGRKANVNLAILGAKPR 35
CKDPNPIIDGRKANVNLA LGAKPR
Sbjct: 90 CKDPNPIIDGRKANVNLAYLGAKPR 114
>sp|C8VSE7|NPR3_EMENI Nitrogen permease regulator 3 OS=Emericella nidulans (strain FGSC
A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=npr3
PE=3 SV=1
Length = 816
Score = 29.3 bits (64), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 10/21 (47%), Positives = 13/21 (61%)
Query: 44 HQRSLALGSNDFEYTGWPSFL 64
H+R LG ND + GWP F+
Sbjct: 187 HKRRFELGINDLAFVGWPVFV 207
>sp|Q7UFZ2|YIDC_RHOBA Membrane protein insertase YidC OS=Rhodopirellula baltica (strain
SH1) GN=yidC PE=3 SV=1
Length = 827
Score = 29.3 bits (64), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 31/74 (41%), Gaps = 13/74 (17%)
Query: 4 RPAAERACKDPNPIIDGRKANVNLAILGAKPRGTLPPGISHQRSL-------------AL 50
R AA DP+ + D ++ VN + +PPG S ++SL A
Sbjct: 447 RRAAANIIADPSAVPDNKERAVNASFYLDSAIADVPPGSSLKQSLRLFAGPKQPDVMEAY 506
Query: 51 GSNDFEYTGWPSFL 64
G D Y GW SF+
Sbjct: 507 GLGDCIYYGWFSFV 520
>sp|Q6AMD2|SYS_DESPS Serine--tRNA ligase OS=Desulfotalea psychrophila (strain LSv54 /
DSM 12343) GN=serS PE=3 SV=1
Length = 425
Score = 29.3 bits (64), Expect = 7.6, Method: Composition-based stats.
Identities = 13/46 (28%), Positives = 22/46 (47%)
Query: 11 CKDPNPIIDGRKANVNLAILGAKPRGTLPPGISHQRSLALGSNDFE 56
C+D P+ + + N+ L + G KP T P ++ + DFE
Sbjct: 112 CQDDVPVGNSDEENIELRVWGKKPEFTFTPKAHYELGEEADTIDFE 157
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.142 0.447
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 38,648,828
Number of Sequences: 539616
Number of extensions: 1497157
Number of successful extensions: 2430
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 2413
Number of HSP's gapped (non-prelim): 18
length of query: 94
length of database: 191,569,459
effective HSP length: 64
effective length of query: 30
effective length of database: 157,034,035
effective search space: 4711021050
effective search space used: 4711021050
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)