Query psy16924
Match_columns 94
No_of_seqs 91 out of 93
Neff 2.4
Searched_HMMs 29240
Date Fri Aug 16 17:11:25 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16924.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/16924hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2cqd_A RNA-binding region cont 94.6 0.044 1.5E-06 34.0 4.0 41 2-43 67-107 (116)
2 1uaw_A Mouse-musashi-1; RNP-ty 92.8 0.059 2E-06 30.6 2.1 29 1-29 49-77 (77)
3 1iqt_A AUF1, heterogeneous nuc 91.9 0.12 4E-06 29.3 2.6 28 1-28 48-75 (75)
4 2dgx_A KIAA0430 protein; RRM d 90.2 0.11 3.8E-06 31.4 1.4 28 1-28 59-87 (96)
5 2mss_A Protein (musashi1); RNA 85.6 0.71 2.4E-05 26.0 2.8 28 1-28 48-75 (75)
6 1x4f_A Matrin 3; structural ge 85.1 0.6 2.1E-05 30.7 2.7 29 1-29 69-100 (112)
7 2fc9_A NCL protein; structure 84.1 0.8 2.7E-05 27.4 2.7 30 1-30 60-90 (101)
8 2div_A TRNA selenocysteine ass 84.0 0.96 3.3E-05 26.8 3.0 31 1-31 59-94 (99)
9 2cpf_A RNA binding motif prote 83.1 0.73 2.5E-05 27.3 2.2 32 2-33 58-90 (98)
10 2cqg_A TDP-43, TAR DNA-binding 82.8 0.83 2.8E-05 27.4 2.4 28 2-30 65-92 (103)
11 2dis_A Unnamed protein product 82.4 0.91 3.1E-05 27.3 2.5 27 2-28 60-89 (109)
12 2lxi_A RNA-binding protein 10; 82.1 0.75 2.6E-05 27.8 2.0 28 1-28 51-80 (91)
13 2cqh_A IGF-II mRNA-binding pro 81.8 0.88 3E-05 26.8 2.2 29 1-29 51-81 (93)
14 1wez_A HnRNP H', FTP-3, hetero 81.7 2 6.8E-05 26.5 3.9 30 1-30 62-91 (102)
15 2cqb_A Peptidyl-prolyl CIS-tra 81.5 0.88 3E-05 27.1 2.2 29 1-29 61-90 (102)
16 2dgo_A Cytotoxic granule-assoc 81.4 1.4 4.7E-05 26.9 3.1 29 2-30 65-94 (115)
17 1wg1_A KIAA1579 protein, homol 81.1 0.47 1.6E-05 28.0 0.8 31 1-31 47-78 (88)
18 1x4d_A Matrin 3; structural ge 80.8 0.28 9.7E-06 31.5 -0.2 28 1-28 59-89 (102)
19 1sjq_A Polypyrimidine tract-bi 80.6 0.64 2.2E-05 30.5 1.4 28 1-28 59-89 (105)
20 2dgw_A Probable RNA-binding pr 80.4 1.1 3.6E-05 26.3 2.2 27 1-28 57-84 (91)
21 2dgt_A RNA-binding protein 30; 79.9 0.81 2.8E-05 27.0 1.6 28 2-29 52-80 (92)
22 2ytc_A PRE-mRNA-splicing facto 79.7 0.92 3.1E-05 26.1 1.8 28 1-28 55-84 (85)
23 2rs2_A Musashi-1, RNA-binding 79.7 0.72 2.5E-05 28.6 1.4 29 2-30 75-103 (109)
24 2cpi_A CCR4-NOT transcription 79.6 0.48 1.6E-05 29.3 0.5 27 2-28 71-98 (111)
25 1x4b_A Heterogeneous nuclear r 79.5 2 6.9E-05 26.3 3.4 29 1-29 76-104 (116)
26 3p5t_L Cleavage and polyadenyl 79.5 0.59 2E-05 27.7 0.9 29 1-29 52-81 (90)
27 2e5g_A U6 snRNA-specific termi 79.0 0.93 3.2E-05 26.9 1.7 26 2-28 53-79 (94)
28 2cpy_A RNA-binding protein 12; 79.0 1.1 3.8E-05 27.7 2.1 30 1-30 64-93 (114)
29 3s8s_A Histone-lysine N-methyl 78.7 0.48 1.6E-05 30.0 0.3 32 1-32 55-87 (110)
30 2dnr_A Synaptojanin-1; RRM dom 78.5 0.89 3E-05 30.2 1.6 28 1-29 56-84 (91)
31 2cqp_A RNA-binding protein 12; 78.1 0.75 2.5E-05 27.2 1.0 28 2-29 65-93 (98)
32 3mdf_A Peptidyl-prolyl CIS-tra 78.0 0.53 1.8E-05 27.0 0.3 27 2-28 57-84 (85)
33 2cq1_A PTB-like protein L; RRM 77.8 0.52 1.8E-05 29.8 0.3 29 1-29 58-89 (101)
34 1x5s_A Cold-inducible RNA-bind 77.8 1.9 6.4E-05 25.6 2.8 30 1-30 61-91 (102)
35 2cpz_A CUG triplet repeat RNA- 77.0 1.4 4.8E-05 26.9 2.1 28 1-28 74-102 (115)
36 1x5t_A Splicing factor 3B subu 76.6 2.8 9.7E-05 24.4 3.3 29 1-29 55-84 (96)
37 4a8x_A RNA-binding protein wit 76.4 0.67 2.3E-05 26.6 0.5 27 2-28 55-82 (88)
38 3bs9_A Nucleolysin TIA-1 isofo 75.4 0.73 2.5E-05 26.5 0.5 27 2-28 56-83 (87)
39 2cpj_A Non-POU domain-containi 75.3 1.5 5.2E-05 26.1 1.9 28 1-28 58-86 (99)
40 2lea_A Serine/arginine-rich sp 75.3 4 0.00014 26.3 4.1 34 1-34 96-130 (135)
41 1x4a_A Splicing factor, argini 75.3 1.3 4.4E-05 26.9 1.6 29 2-30 69-98 (109)
42 2do0_A HnRNP M, heterogeneous 75.3 1.9 6.6E-05 26.1 2.4 29 2-30 64-93 (114)
43 2e5j_A Methenyltetrahydrofolat 75.1 1.1 3.6E-05 26.8 1.1 28 1-28 63-91 (97)
44 1fj7_A Nucleolin RBD1, protein 75.0 1.1 3.6E-05 26.8 1.1 26 2-28 66-92 (101)
45 2cqi_A Nucleolysin TIAR; RNA r 75.0 1.4 4.7E-05 26.4 1.6 29 2-30 63-92 (103)
46 3r27_A HnRNP L, heterogeneous 74.3 0.72 2.4E-05 30.1 0.2 28 1-28 64-94 (100)
47 2dnz_A Probable RNA-binding pr 74.3 1.8 6.1E-05 25.3 2.0 27 2-28 55-82 (95)
48 3ns6_A Eukaryotic translation 74.1 0.93 3.2E-05 27.6 0.7 27 2-28 62-90 (100)
49 1wg5_A Heterogeneous nuclear r 74.0 2.3 8E-05 25.8 2.6 28 2-29 65-92 (104)
50 2dh8_A DAZ-associated protein 74.0 1.3 4.6E-05 26.5 1.4 27 2-29 66-93 (105)
51 4f25_A Polyadenylate-binding p 73.8 0.78 2.7E-05 28.6 0.3 27 2-28 53-80 (115)
52 2fy1_A RNA-binding motif prote 73.6 1.7 5.9E-05 27.2 1.9 29 1-29 55-84 (116)
53 2dgv_A HnRNP M, heterogeneous 73.3 1.7 5.7E-05 25.3 1.7 27 2-28 56-83 (92)
54 1x5u_A Splicing factor 3B subu 73.3 2.4 8.3E-05 25.2 2.5 29 2-30 65-94 (105)
55 2dit_A HIV TAT specific factor 73.3 1.5 5.1E-05 27.2 1.6 28 1-28 71-99 (112)
56 1wex_A Hypothetical protein (r 73.1 1 3.5E-05 28.5 0.7 28 1-28 58-88 (104)
57 1x4g_A Nucleolysin TIAR; struc 73.1 1.6 5.3E-05 26.6 1.6 29 2-30 69-98 (109)
58 3md1_A Nuclear and cytoplasmic 73.0 1.3 4.3E-05 25.2 1.1 27 2-28 51-78 (83)
59 1s79_A Lupus LA protein; RRM, 72.9 2 6.9E-05 26.8 2.1 27 2-28 60-86 (103)
60 2e44_A Insulin-like growth fac 72.9 1 3.5E-05 26.5 0.7 27 2-28 62-89 (96)
61 2cpd_A Apobec-1 stimulating pr 72.8 1.5 5.2E-05 26.1 1.5 28 2-29 59-87 (99)
62 2pe8_A Splicing factor 45; RRM 72.6 0.87 3E-05 28.9 0.3 29 1-29 63-92 (105)
63 2dnq_A RNA-binding protein 4B; 72.5 1.9 6.5E-05 25.2 1.8 28 2-29 50-78 (90)
64 1whw_A Hypothetical protein ri 71.7 3 0.0001 24.6 2.6 29 2-30 58-87 (99)
65 2cjk_A Nuclear polyadenylated 71.5 1.5 5.1E-05 27.4 1.2 27 2-28 137-163 (167)
66 1fjc_A Nucleolin RBD2, protein 71.1 1.7 5.7E-05 25.6 1.3 27 2-28 61-88 (96)
67 1wel_A RNA-binding protein 12; 70.9 2.8 9.5E-05 26.2 2.4 28 2-29 75-102 (124)
68 2cpx_A Hypothetical protein FL 70.8 4.4 0.00015 24.4 3.3 30 1-30 74-104 (115)
69 2d9p_A Polyadenylate-binding p 70.8 2.4 8.2E-05 25.3 2.0 28 2-29 63-91 (103)
70 2hgm_A HNRPF protein, heteroge 70.2 2.3 8E-05 28.2 2.0 27 2-28 92-118 (126)
71 1p1t_A Cleavage stimulation fa 70.1 2.4 8.2E-05 25.1 1.9 29 1-29 57-86 (104)
72 2ki2_A SS-DNA binding protein 70.0 2.2 7.6E-05 24.7 1.7 28 2-30 51-79 (90)
73 2x1f_A MRNA 3'-END-processing 70.0 1.1 3.7E-05 26.6 0.3 27 2-28 52-79 (96)
74 2wbr_A GW182, gawky, LD47780P; 69.8 1 3.4E-05 29.6 0.2 28 1-28 50-78 (89)
75 2ad9_A Polypyrimidine tract-bi 69.5 1.3 4.3E-05 29.5 0.6 28 1-28 74-104 (119)
76 1u6f_A Tcubp1, RNA-binding pro 69.0 3.1 0.00011 26.0 2.4 30 2-31 92-122 (139)
77 2cq3_A RNA-binding protein 9; 68.6 1.2 4.2E-05 26.6 0.4 28 2-29 63-91 (103)
78 1wf1_A RNA-binding protein RAL 68.3 2.6 9E-05 25.6 1.8 29 1-29 69-98 (110)
79 2dhg_A TRNA selenocysteine ass 68.2 3.8 0.00013 24.3 2.5 28 2-29 59-88 (104)
80 3ucg_A Polyadenylate-binding p 67.9 2.3 7.8E-05 24.4 1.4 27 2-28 56-82 (89)
81 2cq0_A Eukaryotic translation 67.7 1.8 6.2E-05 25.8 1.0 28 2-29 65-93 (103)
82 2dgs_A DAZ-associated protein 66.8 4.9 0.00017 23.7 2.8 28 2-29 60-87 (99)
83 2jvr_A Nucleolar protein 3; RN 66.5 1.9 6.4E-05 27.8 0.9 28 2-29 75-103 (111)
84 2fc8_A NCL protein; structure 66.4 3.7 0.00013 24.3 2.2 28 1-28 61-89 (102)
85 1p27_B RNA-binding protein 8A; 66.1 1.7 5.9E-05 25.9 0.7 28 2-29 73-101 (106)
86 1h2v_Z 20 kDa nuclear CAP bind 66.0 2.2 7.4E-05 27.5 1.2 28 2-29 89-117 (156)
87 1x5p_A Negative elongation fac 66.0 1.9 6.5E-05 25.7 0.8 27 2-28 57-84 (97)
88 2dng_A Eukaryotic translation 65.9 6.2 0.00021 23.5 3.2 27 2-29 64-91 (103)
89 2do4_A Squamous cell carcinoma 65.8 1.6 5.4E-05 25.9 0.5 27 2-28 66-93 (100)
90 2err_A Ataxin-2-binding protei 65.8 1.6 5.5E-05 26.9 0.5 28 1-28 76-104 (109)
91 2dnm_A SRP46 splicing factor; 65.2 2.4 8.1E-05 25.3 1.2 29 2-30 63-92 (103)
92 2dnp_A RNA-binding protein 14; 65.1 3.1 0.0001 24.3 1.6 29 2-30 51-80 (90)
93 2a3j_A U1 small nuclear ribonu 64.7 2.5 8.6E-05 27.7 1.3 28 2-29 80-108 (127)
94 3n9u_C Cleavage and polyadenyl 64.7 2.2 7.7E-05 28.5 1.1 27 2-28 107-134 (156)
95 3ex7_B RNA-binding protein 8A; 64.6 2.7 9.3E-05 25.9 1.4 30 2-31 72-102 (126)
96 2nlw_A Eukaryotic translation 64.6 1.5 5E-05 26.8 0.1 27 2-28 69-97 (105)
97 1l3k_A Heterogeneous nuclear r 64.5 3.2 0.00011 26.5 1.8 28 2-29 154-181 (196)
98 2dha_A FLJ20171 protein; RRM d 64.3 4.6 0.00016 26.3 2.5 29 1-29 75-103 (123)
99 3q2s_C Cleavage and polyadenyl 64.2 3.4 0.00012 29.2 2.0 28 2-29 120-148 (229)
100 2lmi_A GRSF-1, G-rich sequence 63.9 5.2 0.00018 24.3 2.6 28 2-29 63-90 (107)
101 2xnq_A Nuclear polyadenylated 63.9 1.7 5.8E-05 26.4 0.3 27 2-28 65-92 (97)
102 2cph_A RNA binding motif prote 63.9 3.1 0.00011 24.8 1.5 28 2-29 66-95 (107)
103 2jrs_A RNA-binding protein 39; 63.5 1.9 6.5E-05 26.7 0.5 27 2-28 76-103 (108)
104 2j76_E EIF-4B, EIF4B, eukaryot 63.5 4.2 0.00014 24.4 2.1 26 2-28 69-95 (100)
105 3v4m_A Splicing factor U2AF 65 63.4 1.9 6.4E-05 27.2 0.5 28 1-28 66-94 (105)
106 1why_A Hypothetical protein ri 63.2 2.2 7.7E-05 25.2 0.8 27 2-28 61-90 (97)
107 2kt5_A RNA and export factor-b 62.9 2.1 7.1E-05 26.6 0.6 29 2-30 84-113 (124)
108 2cpe_A RNA-binding protein EWS 62.8 3.7 0.00013 24.8 1.7 29 1-29 72-101 (113)
109 1x4h_A RNA-binding protein 28; 62.3 3.9 0.00013 24.5 1.7 28 2-29 65-99 (111)
110 2lcw_A RNA-binding protein FUS 66.3 1.6 5.5E-05 26.8 0.0 28 2-29 65-93 (116)
111 2bz2_A Negative elongation fac 62.2 2.8 9.7E-05 26.7 1.2 29 1-29 80-109 (121)
112 2kxn_B Transformer-2 protein h 61.7 2 6.8E-05 27.7 0.4 27 2-28 96-123 (129)
113 2dgu_A Heterogeneous nuclear r 61.2 2.4 8.3E-05 25.4 0.7 28 2-29 53-81 (103)
114 1wi8_A EIF-4B, eukaryotic tran 61.1 7.1 0.00024 23.2 2.8 27 2-29 65-92 (104)
115 2hgn_A Heterogeneous nuclear r 61.0 4.7 0.00016 26.9 2.2 29 2-30 94-122 (139)
116 2db1_A Heterogeneous nuclear r 60.8 4.3 0.00015 25.4 1.9 28 2-29 69-96 (118)
117 3s6e_A RNA-binding protein 39; 60.6 2.8 9.7E-05 27.2 1.0 29 1-29 62-91 (114)
118 2voo_A Lupus LA protein; RNA-b 59.4 4 0.00014 28.0 1.6 27 2-28 158-184 (193)
119 3lqv_A PRE-mRNA branch site pr 59.1 2.9 9.9E-05 25.4 0.8 28 2-29 55-83 (115)
120 2hvz_A Splicing factor, argini 59.0 1.9 6.5E-05 25.6 -0.1 30 1-30 44-74 (101)
121 3ue2_A Poly(U)-binding-splicin 58.8 2.5 8.5E-05 27.6 0.5 29 1-29 78-107 (118)
122 1l3k_A Heterogeneous nuclear r 58.6 4.7 0.00016 25.7 1.7 29 2-30 63-91 (196)
123 2hgl_A HNRPF protein, heteroge 58.2 5.3 0.00018 26.5 2.0 28 1-29 95-123 (136)
124 1oo0_B CG8781-PA, drosophila Y 58.1 2.4 8.3E-05 25.6 0.3 28 2-29 76-104 (110)
125 2kvi_A Nuclear polyadenylated 57.9 6.4 0.00022 23.3 2.2 32 2-33 53-85 (96)
126 1x4e_A RNA binding motif, sing 57.5 1.3 4.3E-05 25.6 -1.1 27 2-28 55-82 (85)
127 1whx_A Hypothetical protein ri 56.2 3.8 0.00013 25.4 1.0 30 2-31 54-84 (111)
128 4f02_A Polyadenylate-binding p 55.9 2.8 9.5E-05 28.3 0.3 27 2-28 151-178 (213)
129 1nu4_A U1A RNA binding domain; 55.7 2.9 9.9E-05 24.5 0.3 27 2-28 59-86 (97)
130 2jvo_A Nucleolar protein 3; nu 54.8 3.5 0.00012 25.5 0.7 29 1-29 72-101 (108)
131 2dnn_A RNA-binding protein 12; 54.1 6.7 0.00023 24.9 1.9 28 1-28 63-90 (109)
132 2j8a_A Histone-lysine N-methyl 53.9 3.6 0.00012 29.3 0.6 25 7-31 69-96 (136)
133 2jwn_A Embryonic polyadenylate 53.8 7.5 0.00026 23.8 2.1 27 2-29 86-113 (124)
134 2qfj_A FBP-interacting repress 53.2 6 0.00021 25.6 1.6 29 2-30 175-204 (216)
135 3egn_A RNA-binding protein 40; 51.9 4.8 0.00016 25.5 0.9 29 1-29 99-128 (143)
136 1x4c_A Splicing factor, argini 50.9 5 0.00017 24.4 0.9 28 2-29 58-91 (108)
137 1fje_B Nucleolin RBD12, protei 50.5 4.2 0.00014 25.7 0.5 28 1-28 143-171 (175)
138 2xs2_A Deleted in azoospermia- 49.6 4.4 0.00015 24.1 0.4 27 2-29 58-84 (102)
139 2krb_A Eukaryotic translation 49.2 9.2 0.00032 21.8 1.8 21 2-22 55-76 (81)
140 2dnh_A Bruno-like 5, RNA bindi 48.4 5 0.00017 23.8 0.6 28 2-29 64-95 (105)
141 2i2y_A Fusion protein consists 47.1 5.4 0.00019 25.4 0.6 27 2-28 118-145 (150)
142 2kn4_A Immunoglobulin G-bindin 46.9 12 0.00041 23.7 2.2 30 2-31 120-150 (158)
143 2m2b_A RNA-binding protein 10; 46.9 4.8 0.00016 25.4 0.3 26 2-28 75-105 (131)
144 2cq4_A RNA binding motif prote 46.6 3.6 0.00012 25.0 -0.3 27 2-29 75-102 (114)
145 2g4b_A Splicing factor U2AF 65 46.4 9.5 0.00032 23.7 1.7 27 2-28 59-85 (172)
146 2diu_A KIAA0430 protein; struc 44.9 5.5 0.00019 26.6 0.4 29 2-30 54-83 (96)
147 2f3j_A RNA and export factor b 44.8 9.3 0.00032 25.9 1.5 29 2-30 137-166 (177)
148 3tyt_A Heterogeneous nuclear r 44.5 5.4 0.00018 27.5 0.3 29 1-29 49-78 (205)
149 1wf0_A TDP-43, TAR DNA-binding 43.2 20 0.00068 20.6 2.7 27 1-28 49-75 (88)
150 1b7f_A Protein (SXL-lethal pro 42.6 6.1 0.00021 24.4 0.3 28 2-29 53-81 (168)
151 2dgp_A Bruno-like 4, RNA bindi 42.4 15 0.00051 21.7 2.1 28 2-29 63-94 (106)
152 3pgw_A U1-A; protein-RNA compl 40.2 11 0.00038 25.8 1.4 29 1-29 59-88 (282)
153 3md3_A Nuclear and cytoplasmic 39.8 7.2 0.00025 23.9 0.3 29 2-30 49-78 (166)
154 1fxl_A Paraneoplastic encephal 38.9 7.6 0.00026 23.8 0.3 28 2-29 52-80 (167)
155 1qm9_A Polypyrimidine tract-bi 37.6 11 0.00037 24.4 0.9 30 1-30 48-78 (198)
156 3beg_B Splicing factor, argini 36.7 10 0.00036 23.4 0.7 21 2-22 59-80 (115)
157 2yh0_A Splicing factor U2AF 65 36.0 12 0.00042 23.8 1.0 27 2-29 59-86 (198)
158 3dxb_A Thioredoxin N-terminall 35.6 11 0.00038 25.4 0.8 28 1-28 182-210 (222)
159 1rk8_A CG8781-PA, CG8781-PA pr 33.1 10 0.00035 24.7 0.3 30 2-31 122-152 (165)
160 2adc_A Polypyrimidine tract-bi 32.7 12 0.00042 25.3 0.6 29 2-30 80-109 (229)
161 3d2w_A TAR DNA-binding protein 32.3 17 0.0006 21.5 1.2 26 2-28 56-81 (89)
162 3smz_A Protein raver-1, ribonu 31.2 15 0.00051 25.2 0.8 28 1-28 233-261 (284)
163 2d9o_A DNAJ (HSP40) homolog, s 31.0 26 0.0009 22.0 2.0 27 1-28 61-87 (100)
164 2dnl_A Cytoplasmic polyadenyla 30.1 14 0.00049 22.6 0.5 27 1-28 59-85 (114)
165 3pgw_S U1-70K; protein-RNA com 29.4 23 0.00077 27.6 1.7 28 2-29 152-180 (437)
166 2e5i_A Heterogeneous nuclear r 28.9 14 0.00049 24.3 0.4 31 1-35 69-102 (124)
167 1sjr_A Polypyrimidine tract-bi 26.1 25 0.00085 24.7 1.3 28 1-28 91-121 (164)
168 3sde_A Paraspeckle component 1 25.3 22 0.00074 24.6 0.8 30 1-30 65-95 (261)
169 2ghp_A U4/U6 snRNA-associated 24.9 29 0.00098 23.9 1.4 26 2-28 262-288 (292)
170 1hkq_A REPA, replication prote 24.7 34 0.0012 22.3 1.7 21 67-87 100-120 (132)
No 1
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=94.61 E-value=0.044 Score=33.95 Aligned_cols=41 Identities=80% Similarity=1.242 Sum_probs=33.7
Q ss_pred CCHHHHHHHhcCCCCcccccccceeeeecCCccCCCCCCCCc
Q psy16924 2 GDRPAAERACKDPNPIIDGRKANVNLAILGAKPRGTLPPGIS 43 (94)
Q Consensus 2 ~D~eaA~rAc~dpnPiIDGRrANcNLA~LGakPr~~~~~gf~ 43 (94)
.+.++|++|++.-|-.|+||+-.|.+|.-..+|+ ..++++.
T Consensus 67 ~~~~~a~~Ai~~~~~~~~g~~l~V~~a~~~~~~~-~~~~~~~ 107 (116)
T 2cqd_A 67 ADRAAAERACKDPNPIIDGRKANVNLAYLGAKPR-SLQTGFA 107 (116)
T ss_dssp SSHHHHHHHHTCSSCEETTEECEEEESTTTCCCC-CCCCCCS
T ss_pred CCHHHHHHHHHhCCCcCCCEEEEEEEcccCCCcc-ccCCCcc
Confidence 5789999999977779999999999999888887 3444443
No 2
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=92.85 E-value=0.059 Score=30.63 Aligned_cols=29 Identities=10% Similarity=0.265 Sum_probs=25.0
Q ss_pred CCCHHHHHHHhcCCCCcccccccceeeee
Q psy16924 1 MGDRPAAERACKDPNPIIDGRKANVNLAI 29 (94)
Q Consensus 1 m~D~eaA~rAc~dpnPiIDGRrANcNLA~ 29 (94)
+.+.++|++|++..|-.|+||+-.|+.|+
T Consensus 49 f~~~~~a~~a~~~~~~~~~g~~l~v~~a~ 77 (77)
T 1uaw_A 49 FMDQAGVDKVLAQSRHELDSKTIDPKVAF 77 (77)
T ss_dssp CCCTTHHHHHHHTTTCCCSSCCCEEEECC
T ss_pred EcCHHHHHHHHHhCCCccCCEEEEEEecC
Confidence 35789999999977778999999999874
No 3
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=91.94 E-value=0.12 Score=29.29 Aligned_cols=28 Identities=7% Similarity=0.154 Sum_probs=23.5
Q ss_pred CCCHHHHHHHhcCCCCcccccccceeee
Q psy16924 1 MGDRPAAERACKDPNPIIDGRKANVNLA 28 (94)
Q Consensus 1 m~D~eaA~rAc~dpnPiIDGRrANcNLA 28 (94)
+.+.++|++|++..+-.|+||+-.|+.|
T Consensus 48 f~~~~~a~~Ai~~~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 48 FKEEEPVKKIMEKKYHNVGLSKCEIKVA 75 (75)
T ss_dssp CSSSHHHHHHHTTSSCCBTTBCCCEEEC
T ss_pred ECCHHHHHHHHHhCCCeECCEEEEEEEC
Confidence 3578999999997667799999998875
No 4
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=90.19 E-value=0.11 Score=31.42 Aligned_cols=28 Identities=29% Similarity=0.223 Sum_probs=23.6
Q ss_pred CCCHHHHHHHhcCCCC-cccccccceeee
Q psy16924 1 MGDRPAAERACKDPNP-IIDGRKANVNLA 28 (94)
Q Consensus 1 m~D~eaA~rAc~dpnP-iIDGRrANcNLA 28 (94)
+.+.++|++|++.-|- .|+||+-.|+.|
T Consensus 59 f~~~~~A~~Ai~~l~g~~~~gr~l~V~~a 87 (96)
T 2dgx_A 59 MENLQDAIGAVNSLHRYKIGSKKILVSLA 87 (96)
T ss_dssp ESSHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred ECCHHHHHHHHHHhCCCEECCeEEEEEEc
Confidence 3578999999996664 599999999998
No 5
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=85.60 E-value=0.71 Score=26.04 Aligned_cols=28 Identities=14% Similarity=0.211 Sum_probs=21.8
Q ss_pred CCCHHHHHHHhcCCCCcccccccceeee
Q psy16924 1 MGDRPAAERACKDPNPIIDGRKANVNLA 28 (94)
Q Consensus 1 m~D~eaA~rAc~dpnPiIDGRrANcNLA 28 (94)
+.+.++|++|++--+-.|+||+-.|+.|
T Consensus 48 f~~~~~a~~a~~~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 48 FESEDIVEKVCEIHFHEINNKMVECKKA 75 (75)
T ss_dssp CSCHHHHHHHHSSSCCCSSSCCCEEECC
T ss_pred ECCHHHHHHHHHCCCCEECCEEEEEEeC
Confidence 3578999999984346699999888765
No 6
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=85.13 E-value=0.6 Score=30.75 Aligned_cols=29 Identities=24% Similarity=0.243 Sum_probs=23.8
Q ss_pred CCCHHHHHHHhc--CCCC-cccccccceeeee
Q psy16924 1 MGDRPAAERACK--DPNP-IIDGRKANVNLAI 29 (94)
Q Consensus 1 m~D~eaA~rAc~--dpnP-iIDGRrANcNLA~ 29 (94)
|.|.++|++|++ +-++ .|+||+-.|+.|-
T Consensus 69 f~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~a~ 100 (112)
T 1x4f_A 69 METREDAMAMVDHCLKKALWFQGRCVKVDLSE 100 (112)
T ss_dssp CSSHHHHHHHHHHHHHSCCCSSSSCCEEEEEC
T ss_pred ECCHHHHHHHHHHhccCCceECCEEEEEEECc
Confidence 578899999998 4354 5999999999983
No 7
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=84.12 E-value=0.8 Score=27.35 Aligned_cols=30 Identities=23% Similarity=0.210 Sum_probs=24.4
Q ss_pred CCCHHHHHHHhcCCC-Ccccccccceeeeec
Q psy16924 1 MGDRPAAERACKDPN-PIIDGRKANVNLAIL 30 (94)
Q Consensus 1 m~D~eaA~rAc~dpn-PiIDGRrANcNLA~L 30 (94)
+.+.++|++|++.-| -.|+||+-.|.+|--
T Consensus 60 f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 90 (101)
T 2fc9_A 60 FASFEDAKEALNSCNKREIEGRAIRLELQGP 90 (101)
T ss_dssp CSSHHHHHHHHHHTSSEEETTEEEEEEECSS
T ss_pred ECCHHHHHHHHHHhCCCEeCCeEEEEEEcCC
Confidence 468899999999666 459999999998743
No 8
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=83.95 E-value=0.96 Score=26.78 Aligned_cols=31 Identities=23% Similarity=0.290 Sum_probs=24.0
Q ss_pred CCCHHHHHHHhcCCC-Ccccccc----cceeeeecC
Q psy16924 1 MGDRPAAERACKDPN-PIIDGRK----ANVNLAILG 31 (94)
Q Consensus 1 m~D~eaA~rAc~dpn-PiIDGRr----ANcNLA~LG 31 (94)
+.+.++|++|++.-| -.|+||+ -.|+.|.-+
T Consensus 59 f~~~~~a~~A~~~l~g~~~~g~~~~~~l~v~~a~~~ 94 (99)
T 2div_A 59 FADLATAEKCLHKINGKPLPGATPAKRFKLNYATYS 94 (99)
T ss_dssp CSCHHHHHHHHHTTTTSEESSCSSCEECCEEETTCC
T ss_pred eCCHHHHHHHHHHHcCCccCCCCcceeEEEeecCCC
Confidence 468899999999765 5599999 777776443
No 9
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=83.07 E-value=0.73 Score=27.28 Aligned_cols=32 Identities=25% Similarity=0.327 Sum_probs=25.1
Q ss_pred CCHHHHHHHhcCCC-CcccccccceeeeecCCc
Q psy16924 2 GDRPAAERACKDPN-PIIDGRKANVNLAILGAK 33 (94)
Q Consensus 2 ~D~eaA~rAc~dpn-PiIDGRrANcNLA~LGak 33 (94)
.+.++|++|++.-| -.|+||+-.|..|--..+
T Consensus 58 ~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~ 90 (98)
T 2cpf_A 58 KKPEQAQKALKQLQGHTVDGHKLEVRISERATK 90 (98)
T ss_dssp SSHHHHHHHHHHSTTCEETTEECEEECSSCSSC
T ss_pred CCHHHHHHHHHHhCCCeeCCeEEEEEEccCCCC
Confidence 57899999999644 569999999999855433
No 10
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=82.77 E-value=0.83 Score=27.36 Aligned_cols=28 Identities=18% Similarity=0.261 Sum_probs=23.5
Q ss_pred CCHHHHHHHhcCCCCcccccccceeeeec
Q psy16924 2 GDRPAAERACKDPNPIIDGRKANVNLAIL 30 (94)
Q Consensus 2 ~D~eaA~rAc~dpnPiIDGRrANcNLA~L 30 (94)
.|.++|++|+++ .-.|+||+-.|.+|.-
T Consensus 65 ~~~~~a~~A~~~-~~~~~g~~l~v~~a~~ 92 (103)
T 2cqg_A 65 TEYETQVKVMSQ-RHMIDGRWCDCKLPNS 92 (103)
T ss_dssp SSHHHHHHHHHS-CEEETTEEEEEECCCT
T ss_pred CCHHHHHHHHHc-CCeeCCeEEEEEecCC
Confidence 578999999996 4589999999998743
No 11
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=82.37 E-value=0.91 Score=27.35 Aligned_cols=27 Identities=22% Similarity=0.118 Sum_probs=23.4
Q ss_pred CCHHHHHHHhcCCC---Ccccccccceeee
Q psy16924 2 GDRPAAERACKDPN---PIIDGRKANVNLA 28 (94)
Q Consensus 2 ~D~eaA~rAc~dpn---PiIDGRrANcNLA 28 (94)
.|.++|++|++.-| -.|+||+-.|+.|
T Consensus 60 ~~~~~A~~A~~~l~~g~~~~~g~~l~V~~a 89 (109)
T 2dis_A 60 ESHRAAAMARRKLMPGRIQLWGHQIAVDWA 89 (109)
T ss_dssp SSHHHHHHHHTTTTTCCSCBTTBCCEEEES
T ss_pred cCHHHHHHHHHHhhCCCceecCCeEEEEEc
Confidence 57899999999764 5799999999987
No 12
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=82.15 E-value=0.75 Score=27.75 Aligned_cols=28 Identities=18% Similarity=0.215 Sum_probs=22.6
Q ss_pred CCCHHHHHHHhcC-CCC-cccccccceeee
Q psy16924 1 MGDRPAAERACKD-PNP-IIDGRKANVNLA 28 (94)
Q Consensus 1 m~D~eaA~rAc~d-pnP-iIDGRrANcNLA 28 (94)
+.+.|+|++|++. -|. .|+||+-.|+.|
T Consensus 51 F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a 80 (91)
T 2lxi_A 51 FSHLQDATRWMEANQHSLNILGQKVSMHYS 80 (91)
T ss_dssp CSSHHHHHHHHHTTTTEEEETTEEEEEECC
T ss_pred ecCHHHHHHHHHhcCCCeEECCEEEEEEEc
Confidence 4678999999974 344 499999999987
No 13
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=81.84 E-value=0.88 Score=26.77 Aligned_cols=29 Identities=21% Similarity=0.247 Sum_probs=23.8
Q ss_pred CCCHHHHHHHhcCCC--Ccccccccceeeee
Q psy16924 1 MGDRPAAERACKDPN--PIIDGRKANVNLAI 29 (94)
Q Consensus 1 m~D~eaA~rAc~dpn--PiIDGRrANcNLA~ 29 (94)
+.|.++|++|++.-| -.|+||+-.|..|-
T Consensus 51 f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~ 81 (93)
T 2cqh_A 51 YPDQNWAIRAIETLSGKVELHGKIMEVDYSV 81 (93)
T ss_dssp CSCHHHHHHHHHHHTTTCEETTEECEEEECC
T ss_pred ECCHHHHHHHHHHccCCeeECCEEEEEEEcc
Confidence 468899999998555 56999999999884
No 14
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=81.67 E-value=2 Score=26.53 Aligned_cols=30 Identities=13% Similarity=0.068 Sum_probs=23.9
Q ss_pred CCCHHHHHHHhcCCCCcccccccceeeeec
Q psy16924 1 MGDRPAAERACKDPNPIIDGRKANVNLAIL 30 (94)
Q Consensus 1 m~D~eaA~rAc~dpnPiIDGRrANcNLA~L 30 (94)
+.+.|+|++|++--.-.|+||+..|.++.-
T Consensus 62 F~~~~~a~~Al~~~~~~~~gr~i~V~~~~~ 91 (102)
T 1wez_A 62 FATHEDAVAAMAKDKANMQHRYVELFLNST 91 (102)
T ss_dssp CSSSHHHHHHHTTSSCCSSSSCCEEEEECC
T ss_pred ECCHHHHHHHHHhCCCeECCcEEEEEECCC
Confidence 367899999997544679999999988754
No 15
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=81.48 E-value=0.88 Score=27.10 Aligned_cols=29 Identities=31% Similarity=0.243 Sum_probs=23.5
Q ss_pred CCCHHHHHHHhcCCC-Ccccccccceeeee
Q psy16924 1 MGDRPAAERACKDPN-PIIDGRKANVNLAI 29 (94)
Q Consensus 1 m~D~eaA~rAc~dpn-PiIDGRrANcNLA~ 29 (94)
+.+.++|++|++.-| -.|+||+-.|.+|-
T Consensus 61 f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~ 90 (102)
T 2cqb_A 61 FELAEDAAAAIDNMNESELFGRTIRVNLAK 90 (102)
T ss_dssp CSSHHHHHHHHHHHTTEEETTEEEEEEECC
T ss_pred ECCHHHHHHHHHHhCCCEECCcEEEEEeCC
Confidence 467899999998544 45999999999974
No 16
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=81.39 E-value=1.4 Score=26.89 Aligned_cols=29 Identities=24% Similarity=0.212 Sum_probs=23.3
Q ss_pred CCHHHHHHHhcCCC-Ccccccccceeeeec
Q psy16924 2 GDRPAAERACKDPN-PIIDGRKANVNLAIL 30 (94)
Q Consensus 2 ~D~eaA~rAc~dpn-PiIDGRrANcNLA~L 30 (94)
.+.++|++|++.-| -.|+||+-.|..|--
T Consensus 65 ~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~ 94 (115)
T 2dgo_A 65 FNKWDAENAIQQMGGQWLGGRQIRTNWATR 94 (115)
T ss_dssp SSHHHHHHHHHHTTTCEETTEECEEEESSC
T ss_pred CCHHHHHHHHHHhCCCEECCEEEEEEEccC
Confidence 57899999998544 569999999999743
No 17
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=81.14 E-value=0.47 Score=28.02 Aligned_cols=31 Identities=16% Similarity=0.069 Sum_probs=24.9
Q ss_pred CCCHHHHHHHhcCCC-CcccccccceeeeecC
Q psy16924 1 MGDRPAAERACKDPN-PIIDGRKANVNLAILG 31 (94)
Q Consensus 1 m~D~eaA~rAc~dpn-PiIDGRrANcNLA~LG 31 (94)
+.+.++|++|++.-| -.|+||+-.|+.|--+
T Consensus 47 f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~ 78 (88)
T 1wg1_A 47 LLNGEQAQNAIQMFHQYSFRGKDLIVQLQPTD 78 (88)
T ss_dssp CSCHHHHHHHHHHHTTEEETTEEEEEEECCCC
T ss_pred ECCHHHHHHHHHHhCCCeECCcEEEEEEcCCC
Confidence 468899999999666 4599999999998443
No 18
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=80.82 E-value=0.28 Score=31.51 Aligned_cols=28 Identities=25% Similarity=0.427 Sum_probs=23.2
Q ss_pred CCCHHHHHHHhcC--CCC-cccccccceeee
Q psy16924 1 MGDRPAAERACKD--PNP-IIDGRKANVNLA 28 (94)
Q Consensus 1 m~D~eaA~rAc~d--pnP-iIDGRrANcNLA 28 (94)
|.|.++|++|++. -++ .|+||+-.|+.|
T Consensus 59 f~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a 89 (102)
T 1x4d_A 59 MATTEDAQAAVDYYTTTPALVFGKPVRVHLS 89 (102)
T ss_dssp ESSHHHHHHHHHHHHHSCCEETTEECEEEEE
T ss_pred ECCHHHHHHHHHHHcCCCceECCcEEEEEEC
Confidence 5688999999983 344 699999999998
No 19
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=80.63 E-value=0.64 Score=30.46 Aligned_cols=28 Identities=18% Similarity=0.404 Sum_probs=23.5
Q ss_pred CCCHHHHHHHhc--CCC-Ccccccccceeee
Q psy16924 1 MGDRPAAERACK--DPN-PIIDGRKANVNLA 28 (94)
Q Consensus 1 m~D~eaA~rAc~--dpn-PiIDGRrANcNLA 28 (94)
|.|.++|++|++ +-+ ..|+||+-.|+.|
T Consensus 59 F~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~A 89 (105)
T 1sjq_A 59 MNTEEAANTMVNYYTSVTPVLRGQPIYIQFS 89 (105)
T ss_dssp ESSHHHHHHHHHHHTTSCCEETTEECCBCCC
T ss_pred ECCHHHHHHHHHHhccCCceECCEEEEEEEc
Confidence 468899999998 555 5699999999997
No 20
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=80.45 E-value=1.1 Score=26.31 Aligned_cols=27 Identities=22% Similarity=0.255 Sum_probs=22.8
Q ss_pred CCCHHHHHHHhcCCC-Ccccccccceeee
Q psy16924 1 MGDRPAAERACKDPN-PIIDGRKANVNLA 28 (94)
Q Consensus 1 m~D~eaA~rAc~dpn-PiIDGRrANcNLA 28 (94)
+.+.++|++|++ -| -.|+||+-.|..|
T Consensus 57 f~~~~~a~~A~~-~~g~~~~gr~i~v~~a 84 (91)
T 2dgw_A 57 FSNEEEVKQALK-CNREYMGGRYIEVFRE 84 (91)
T ss_dssp CSSHHHHHHHHH-SCSEEETTEEEEEEEE
T ss_pred ECCHHHHHHHHH-hCCceeCCcEEEEEEC
Confidence 368899999999 66 5599999999887
No 21
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=79.94 E-value=0.81 Score=26.98 Aligned_cols=28 Identities=18% Similarity=0.273 Sum_probs=23.0
Q ss_pred CCHHHHHHHhcCCC-Ccccccccceeeee
Q psy16924 2 GDRPAAERACKDPN-PIIDGRKANVNLAI 29 (94)
Q Consensus 2 ~D~eaA~rAc~dpn-PiIDGRrANcNLA~ 29 (94)
.|.++|++|++.-| -.|+||+-.|..|-
T Consensus 52 ~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 80 (92)
T 2dgt_A 52 ERAEDAVEAIRGLDNTEFQGKRMHVQLST 80 (92)
T ss_dssp SCHHHHHHHHHHHTTEEETTEEEEEEESS
T ss_pred CCHHHHHHHHHHhCCCeeCCcEEEEEEcc
Confidence 57899999998654 45999999999983
No 22
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=79.73 E-value=0.92 Score=26.06 Aligned_cols=28 Identities=39% Similarity=0.589 Sum_probs=22.5
Q ss_pred CCCHHHHHHHhcCC-C-Ccccccccceeee
Q psy16924 1 MGDRPAAERACKDP-N-PIIDGRKANVNLA 28 (94)
Q Consensus 1 m~D~eaA~rAc~dp-n-PiIDGRrANcNLA 28 (94)
+.+.++|++|++.- | -.|+||+-.|..|
T Consensus 55 f~~~~~A~~a~~~l~~~~~~~g~~l~v~~a 84 (85)
T 2ytc_A 55 FATRQAAEVAAEKSFNKLIVNGRRLNVKWG 84 (85)
T ss_dssp ESSHHHHHHHHHTTTTTCEETTEECCEEEC
T ss_pred ECCHHHHHHHHHHhcCCeeECCCEEEEEec
Confidence 35889999999864 4 5799999888765
No 23
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=79.71 E-value=0.72 Score=28.60 Aligned_cols=29 Identities=10% Similarity=0.220 Sum_probs=25.0
Q ss_pred CCHHHHHHHhcCCCCcccccccceeeeec
Q psy16924 2 GDRPAAERACKDPNPIIDGRKANVNLAIL 30 (94)
Q Consensus 2 ~D~eaA~rAc~dpnPiIDGRrANcNLA~L 30 (94)
.+.++|++|++.-+-.|+||+-.|..|.-
T Consensus 75 ~~~~~A~~Ai~~~~~~l~g~~l~V~~a~~ 103 (109)
T 2rs2_A 75 MDQAGVDKVLAQSRHELDSKTIDPKVAFP 103 (109)
T ss_dssp SSHHHHHHHHHSSCEEETTEEEEEEECCC
T ss_pred CCHHHHHHHHHHCCCcCCCEEEEEEEccC
Confidence 57899999999767789999999998853
No 24
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=79.55 E-value=0.48 Score=29.34 Aligned_cols=27 Identities=30% Similarity=0.319 Sum_probs=22.8
Q ss_pred CCHHHHHHHhcCCC-Ccccccccceeee
Q psy16924 2 GDRPAAERACKDPN-PIIDGRKANVNLA 28 (94)
Q Consensus 2 ~D~eaA~rAc~dpn-PiIDGRrANcNLA 28 (94)
.|.|+|++|++.-| -.|+||+-.|++|
T Consensus 71 ~~~~~A~~Ai~~lng~~~~gr~l~V~~a 98 (111)
T 2cpi_A 71 IRSEDALRAIQCVNNVVVDGRTLKASLG 98 (111)
T ss_dssp SSHHHHHHHHHHHTTEEETTEEEEEESC
T ss_pred CcHHHHHHHHHHhCCCEECCEEEEEEec
Confidence 57899999999644 5699999999987
No 25
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=79.53 E-value=2 Score=26.26 Aligned_cols=29 Identities=21% Similarity=0.243 Sum_probs=23.8
Q ss_pred CCCHHHHHHHhcCCCCcccccccceeeee
Q psy16924 1 MGDRPAAERACKDPNPIIDGRKANVNLAI 29 (94)
Q Consensus 1 m~D~eaA~rAc~dpnPiIDGRrANcNLA~ 29 (94)
+.+.++|++|++.-.-.|+||+-.|..|.
T Consensus 76 f~~~~~a~~Ai~~~~~~~~g~~l~V~~a~ 104 (116)
T 1x4b_A 76 FSSMAEVDAAMAARPHSIDGRVVEPKRAV 104 (116)
T ss_dssp CSSHHHHHHHHTSCSEEETTEEEEEECCS
T ss_pred eCCHHHHHHHHHhCCcEECCEEEEEEECC
Confidence 36889999999983356999999999873
No 26
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=79.50 E-value=0.59 Score=27.69 Aligned_cols=29 Identities=10% Similarity=0.154 Sum_probs=22.6
Q ss_pred CCCHHHHHHHhcCCC-Ccccccccceeeee
Q psy16924 1 MGDRPAAERACKDPN-PIIDGRKANVNLAI 29 (94)
Q Consensus 1 m~D~eaA~rAc~dpn-PiIDGRrANcNLA~ 29 (94)
+.|.++|++|++.-| -.|+||+-.|..|-
T Consensus 52 f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 52 VGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp C-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred ECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 468899999998665 46999999998873
No 27
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=79.03 E-value=0.93 Score=26.91 Aligned_cols=26 Identities=23% Similarity=0.280 Sum_probs=22.2
Q ss_pred CCHHHHHHHhcCCC-Ccccccccceeee
Q psy16924 2 GDRPAAERACKDPN-PIIDGRKANVNLA 28 (94)
Q Consensus 2 ~D~eaA~rAc~dpn-PiIDGRrANcNLA 28 (94)
.|.++|++|++ -| -.|+||+-.|+.|
T Consensus 53 ~~~~~a~~ai~-l~g~~~~g~~l~V~~a 79 (94)
T 2e5g_A 53 GDVGAREAVLS-QSQHSLGGHRLRVRPR 79 (94)
T ss_dssp SSHHHHHHHHT-CSCCEETTEECCCBCS
T ss_pred CCHHHHHHHHh-cCCeEECCEEEEEEEC
Confidence 57899999999 66 4599999999976
No 28
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=79.01 E-value=1.1 Score=27.74 Aligned_cols=30 Identities=20% Similarity=0.308 Sum_probs=24.7
Q ss_pred CCCHHHHHHHhcCCCCcccccccceeeeec
Q psy16924 1 MGDRPAAERACKDPNPIIDGRKANVNLAIL 30 (94)
Q Consensus 1 m~D~eaA~rAc~dpnPiIDGRrANcNLA~L 30 (94)
+.+.|+|++|++.-.-.|+||+-.|..|.-
T Consensus 64 F~~~~~a~~Al~~~~~~~~gr~i~v~~a~~ 93 (114)
T 2cpy_A 64 FKNEDDARKSERLHRKKLNGREAFVHVVTL 93 (114)
T ss_dssp CSSHHHHHHHGGGCSEEETTEEEEEEEECH
T ss_pred ECCHHHHHHHHHhCCCccCCeEEEEEECCH
Confidence 468899999999844669999999998843
No 29
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=78.72 E-value=0.48 Score=29.98 Aligned_cols=32 Identities=19% Similarity=0.269 Sum_probs=26.5
Q ss_pred CCCHHHHHHHhcCCC-CcccccccceeeeecCC
Q psy16924 1 MGDRPAAERACKDPN-PIIDGRKANVNLAILGA 32 (94)
Q Consensus 1 m~D~eaA~rAc~dpn-PiIDGRrANcNLA~LGa 32 (94)
+.|.|+|++|++.-| -.|+||+-.|.+|.-+.
T Consensus 55 f~~~~~A~~Ai~~lng~~~~gr~i~V~~a~~~~ 87 (110)
T 3s8s_A 55 FTSTRGAKETVKNLHLTSVMGNIIHAQLDIKGQ 87 (110)
T ss_dssp ESSHHHHHHHHHHHTTCEETTEECEEEECSTTH
T ss_pred ECCHHHHHHHHHHhCCCEECCeEEEEEECCCCc
Confidence 368899999999766 56999999999997653
No 30
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=78.49 E-value=0.89 Score=30.17 Aligned_cols=28 Identities=14% Similarity=0.063 Sum_probs=23.9
Q ss_pred CCCHHHHHHHhcCCCCc-ccccccceeeee
Q psy16924 1 MGDRPAAERACKDPNPI-IDGRKANVNLAI 29 (94)
Q Consensus 1 m~D~eaA~rAc~dpnPi-IDGRrANcNLA~ 29 (94)
+.|.++|.+|.+ -|-. |+||+-.+|++.
T Consensus 56 F~d~~sAlaAi~-mnG~~v~Gr~LkV~lkt 84 (91)
T 2dnr_A 56 FLEGSSALNVLS-LNGKELLNRTITIALKS 84 (91)
T ss_dssp ESSHHHHHHGGG-GTTCEETTEEEEEEECC
T ss_pred ECChHHHHHHHh-cCCeEeCCeEEEEEeCC
Confidence 368899999998 7755 999999999984
No 31
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=78.08 E-value=0.75 Score=27.23 Aligned_cols=28 Identities=32% Similarity=0.287 Sum_probs=23.6
Q ss_pred CCHHHHHHHhcCCC-Ccccccccceeeee
Q psy16924 2 GDRPAAERACKDPN-PIIDGRKANVNLAI 29 (94)
Q Consensus 2 ~D~eaA~rAc~dpn-PiIDGRrANcNLA~ 29 (94)
.+.++|++|++.-| -.|+||+-.|.+|.
T Consensus 65 ~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~ 93 (98)
T 2cqp_A 65 ESRDEATAAVIDLNDRPIGSRKVKLVLGS 93 (98)
T ss_dssp SCHHHHHHHHHHTTTCEETTEECEEEESS
T ss_pred CCHHHHHHHHHHhCCCeeCCeEEEEEEcC
Confidence 57899999998666 57999999999873
No 32
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=77.98 E-value=0.53 Score=27.01 Aligned_cols=27 Identities=33% Similarity=0.267 Sum_probs=21.2
Q ss_pred CCHHHHHHHhcCCC-Ccccccccceeee
Q psy16924 2 GDRPAAERACKDPN-PIIDGRKANVNLA 28 (94)
Q Consensus 2 ~D~eaA~rAc~dpn-PiIDGRrANcNLA 28 (94)
.+.++|++|++.-| -.|+||+-.|.+|
T Consensus 57 ~~~~~a~~A~~~l~g~~~~g~~l~v~~a 84 (85)
T 3mdf_A 57 ELAEDAAAAIDNMNESELFGRTIRVNLA 84 (85)
T ss_dssp SSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 57899999997433 4589999888776
No 33
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=77.83 E-value=0.52 Score=29.83 Aligned_cols=29 Identities=7% Similarity=0.064 Sum_probs=23.3
Q ss_pred CCCHHHHHHHhc--CCCC-cccccccceeeee
Q psy16924 1 MGDRPAAERACK--DPNP-IIDGRKANVNLAI 29 (94)
Q Consensus 1 m~D~eaA~rAc~--dpnP-iIDGRrANcNLA~ 29 (94)
|.|.++|++|++ +-|+ .|+||+-.|+.|-
T Consensus 58 f~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a~ 89 (101)
T 2cq1_A 58 LATEEAAITMVNYYSAVTPHLRNQPIYIQYSN 89 (101)
T ss_dssp ESSHHHHHHHHHHHHHSCCEETTEECEEEECS
T ss_pred ECCHHHHHHHHHHhccCCceECCcEEEEEEcC
Confidence 468899999998 4444 6999999999973
No 34
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=77.81 E-value=1.9 Score=25.63 Aligned_cols=30 Identities=27% Similarity=0.242 Sum_probs=23.5
Q ss_pred CCCHHHHHHHhcCCC-Ccccccccceeeeec
Q psy16924 1 MGDRPAAERACKDPN-PIIDGRKANVNLAIL 30 (94)
Q Consensus 1 m~D~eaA~rAc~dpn-PiIDGRrANcNLA~L 30 (94)
+.+.++|++|++.-| -.|+||+-.|..|.=
T Consensus 61 f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 91 (102)
T 1x5s_A 61 FENIDDAKDAMMAMNGKSVDGRQIRVDQAGK 91 (102)
T ss_dssp CSSHHHHHHHHHHHTTCCTTSCCCEEEEEEC
T ss_pred ECCHHHHHHHHHHhCCCEECCeEEEEEECCC
Confidence 367899999997544 459999999999843
No 35
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=77.05 E-value=1.4 Score=26.92 Aligned_cols=28 Identities=21% Similarity=0.196 Sum_probs=23.0
Q ss_pred CCCHHHHHHHhcCCC-Ccccccccceeee
Q psy16924 1 MGDRPAAERACKDPN-PIIDGRKANVNLA 28 (94)
Q Consensus 1 m~D~eaA~rAc~dpn-PiIDGRrANcNLA 28 (94)
+.+.++|++|++.-| -.|+||+-.|.+|
T Consensus 74 f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 102 (115)
T 2cpz_A 74 YDNPVSAQAAIQSMNGFQIGMKRLKVQLK 102 (115)
T ss_dssp CSSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred ECCHHHHHHHHHHcCCCEECCEEEEEEEc
Confidence 467899999997544 5599999999987
No 36
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=76.64 E-value=2.8 Score=24.44 Aligned_cols=29 Identities=21% Similarity=0.214 Sum_probs=24.0
Q ss_pred CCCHHHHHHHhcCCC-Ccccccccceeeee
Q psy16924 1 MGDRPAAERACKDPN-PIIDGRKANVNLAI 29 (94)
Q Consensus 1 m~D~eaA~rAc~dpn-PiIDGRrANcNLA~ 29 (94)
+.+.++|++|++.-| -.|+||+-.|.+|.
T Consensus 55 f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 84 (96)
T 1x5t_A 55 FASFDASDAAIEAMNGQYLCNRPITVSYAF 84 (96)
T ss_dssp BSSHHHHHHHHHTTTTCEETTEECEEEESC
T ss_pred ECCHHHHHHHHHHcCCCEECCEEEEEEEec
Confidence 367899999999766 45999999999874
No 37
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=76.41 E-value=0.67 Score=26.62 Aligned_cols=27 Identities=26% Similarity=0.306 Sum_probs=22.6
Q ss_pred CCHHHHHHHhcCC-CCcccccccceeee
Q psy16924 2 GDRPAAERACKDP-NPIIDGRKANVNLA 28 (94)
Q Consensus 2 ~D~eaA~rAc~dp-nPiIDGRrANcNLA 28 (94)
.+.++|++|++.- +-.|+||+-.|..|
T Consensus 55 ~~~~~a~~A~~~l~g~~~~g~~l~v~~a 82 (88)
T 4a8x_A 55 ENPDEAEKALKHMDGGQIDGQEITATAV 82 (88)
T ss_dssp SSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred ecHHHHHHHHHHcCCCeECCeEEEEEEC
Confidence 5789999999953 35699999999988
No 38
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=75.41 E-value=0.73 Score=26.49 Aligned_cols=27 Identities=26% Similarity=0.262 Sum_probs=22.1
Q ss_pred CCHHHHHHHhcCCC-Ccccccccceeee
Q psy16924 2 GDRPAAERACKDPN-PIIDGRKANVNLA 28 (94)
Q Consensus 2 ~D~eaA~rAc~dpn-PiIDGRrANcNLA 28 (94)
.+.++|++|++.-| -.|+||+-.|..|
T Consensus 56 ~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (87)
T 3bs9_A 56 FNKWDAENAIQQMGGQWLGGRQIRTNWA 83 (87)
T ss_dssp SSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCHHHHHHHHHHcCCCEECCeEEEEEec
Confidence 57889999998543 5699999999887
No 39
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=75.34 E-value=1.5 Score=26.07 Aligned_cols=28 Identities=25% Similarity=0.301 Sum_probs=22.3
Q ss_pred CCCHHHHHHHhcCCC-Ccccccccceeee
Q psy16924 1 MGDRPAAERACKDPN-PIIDGRKANVNLA 28 (94)
Q Consensus 1 m~D~eaA~rAc~dpn-PiIDGRrANcNLA 28 (94)
+.+.++|++|++.-| -.|+||+-.|..|
T Consensus 58 f~~~~~a~~a~~~l~g~~~~g~~l~v~~a 86 (99)
T 2cpj_A 58 LETRTLAEIAKVELDNMPLRGKQLRVRFA 86 (99)
T ss_dssp CSSSHHHHHHHHHHTTCCBTTBCCEEEES
T ss_pred ECCHHHHHHHHHHhCCCEeCCceEEEEEc
Confidence 467899999997544 4599999999887
No 40
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=75.32 E-value=4 Score=26.31 Aligned_cols=34 Identities=32% Similarity=0.550 Sum_probs=26.5
Q ss_pred CCCHHHHHHHhcCCC-CcccccccceeeeecCCcc
Q psy16924 1 MGDRPAAERACKDPN-PIIDGRKANVNLAILGAKP 34 (94)
Q Consensus 1 m~D~eaA~rAc~dpn-PiIDGRrANcNLA~LGakP 34 (94)
+.+.++|++|++.-| -.|+||+-.|.+|--..+|
T Consensus 96 F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a~~~~~~ 130 (135)
T 2lea_A 96 FHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRPP 130 (135)
T ss_dssp CSCHHHHHHHHTTTTTCCSSSSCCEEEECCCCCCC
T ss_pred ECCHHHHHHHHHHcCCCEECCEEEEEEECCCCCCC
Confidence 368899999998655 4599999999998654433
No 41
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=75.31 E-value=1.3 Score=26.87 Aligned_cols=29 Identities=24% Similarity=0.174 Sum_probs=23.3
Q ss_pred CCHHHHHHHhcCCC-Ccccccccceeeeec
Q psy16924 2 GDRPAAERACKDPN-PIIDGRKANVNLAIL 30 (94)
Q Consensus 2 ~D~eaA~rAc~dpn-PiIDGRrANcNLA~L 30 (94)
.+.|+|++|++.-| -.|+||+-.|.+|--
T Consensus 69 ~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~ 98 (109)
T 1x4a_A 69 EDPRDAEDAVYGRDGYDYDGYRLRVEFPRS 98 (109)
T ss_dssp SCHHHHHHHHHHHTTCEETTEECEEECCCC
T ss_pred CCHHHHHHHHHHcCCCEECCeEEEEEEccc
Confidence 57899999997544 469999999998844
No 42
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=75.26 E-value=1.9 Score=26.05 Aligned_cols=29 Identities=17% Similarity=0.061 Sum_probs=23.4
Q ss_pred CCHHHHHHHhcCCC-Ccccccccceeeeec
Q psy16924 2 GDRPAAERACKDPN-PIIDGRKANVNLAIL 30 (94)
Q Consensus 2 ~D~eaA~rAc~dpn-PiIDGRrANcNLA~L 30 (94)
.+.++|++|++.-| -.|+||+-.|.+|--
T Consensus 64 ~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 93 (114)
T 2do0_A 64 EQSIEAVQAISMFNGQLLFDRPMHVKMDER 93 (114)
T ss_dssp SSHHHHHHHHHHHTTCEETTEECEEEECSC
T ss_pred CCHHHHHHHHHHhCCCEeCCCEEEEEEccc
Confidence 57899999998544 569999999999743
No 43
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=75.11 E-value=1.1 Score=26.80 Aligned_cols=28 Identities=25% Similarity=0.171 Sum_probs=22.7
Q ss_pred CCCHHHHHHHhcCCC-Ccccccccceeee
Q psy16924 1 MGDRPAAERACKDPN-PIIDGRKANVNLA 28 (94)
Q Consensus 1 m~D~eaA~rAc~dpn-PiIDGRrANcNLA 28 (94)
+.+.++|++|++.-| -.|+||+-.|..|
T Consensus 63 f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 91 (97)
T 2e5j_A 63 YPDSAAAQQAVSCLQGLRLGTDTLRVALA 91 (97)
T ss_dssp CSSHHHHHHHHHHHTTCCSSSSCCEEEEC
T ss_pred ECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 367899999998644 4599999999887
No 44
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=74.98 E-value=1.1 Score=26.78 Aligned_cols=26 Identities=12% Similarity=0.091 Sum_probs=22.2
Q ss_pred CCHHHHHHHhcCCC-Ccccccccceeee
Q psy16924 2 GDRPAAERACKDPN-PIIDGRKANVNLA 28 (94)
Q Consensus 2 ~D~eaA~rAc~dpn-PiIDGRrANcNLA 28 (94)
.+.++|++|++ -| -.|+||+-.|..|
T Consensus 66 ~~~~~a~~A~~-l~g~~~~g~~l~V~~a 92 (101)
T 1fj7_A 66 ESAEDLEKALE-LTGLKVFGNEIKLEKP 92 (101)
T ss_dssp SSHHHHHHHHH-GGGCCBTTBCCEEECC
T ss_pred CCHHHHHHHHh-cCCcEECCcEEEEEEc
Confidence 57899999998 65 5599999999987
No 45
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=74.95 E-value=1.4 Score=26.37 Aligned_cols=29 Identities=28% Similarity=0.196 Sum_probs=23.3
Q ss_pred CCHHHHHHHhcCCC-Ccccccccceeeeec
Q psy16924 2 GDRPAAERACKDPN-PIIDGRKANVNLAIL 30 (94)
Q Consensus 2 ~D~eaA~rAc~dpn-PiIDGRrANcNLA~L 30 (94)
.+.++|++|++.-| -.|+||+-.|..|--
T Consensus 63 ~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~ 92 (103)
T 2cqi_A 63 YEHRDAAAALAAMNGRKILGKEVKVNWATT 92 (103)
T ss_dssp SSHHHHHHHHHHHTTEEETTEEEEEEECCC
T ss_pred CCHHHHHHHHHHhCCCCcCCCeEEEEECCC
Confidence 57899999998554 459999999998744
No 46
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=74.29 E-value=0.72 Score=30.05 Aligned_cols=28 Identities=32% Similarity=0.292 Sum_probs=22.7
Q ss_pred CCCHHHHHHHhc--CCCC-cccccccceeee
Q psy16924 1 MGDRPAAERACK--DPNP-IIDGRKANVNLA 28 (94)
Q Consensus 1 m~D~eaA~rAc~--dpnP-iIDGRrANcNLA 28 (94)
|.|.++|++|++ +-++ .|+||+..|+.|
T Consensus 64 f~~~~~A~~Av~~ln~~~~~i~Gr~i~V~~S 94 (100)
T 3r27_A 64 FEDVLGACNAVNYAADNQIYIAGHPAFVNYS 94 (100)
T ss_dssp ESSHHHHHHHHHHHHHSCEEETTEEEEEEEC
T ss_pred ECCHHHHHHHHHHhcCCCceeCCcEEEEEec
Confidence 568899999988 4455 599999999886
No 47
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=74.29 E-value=1.8 Score=25.31 Aligned_cols=27 Identities=30% Similarity=0.313 Sum_probs=22.4
Q ss_pred CCHHHHHHHhcCCC-Ccccccccceeee
Q psy16924 2 GDRPAAERACKDPN-PIIDGRKANVNLA 28 (94)
Q Consensus 2 ~D~eaA~rAc~dpn-PiIDGRrANcNLA 28 (94)
.+.++|++|++.-| -.|+||+-.|..|
T Consensus 55 ~~~~~a~~A~~~l~g~~~~g~~l~V~~a 82 (95)
T 2dnz_A 55 SDSECARRALEQLNGFELAGRPMRVGHV 82 (95)
T ss_dssp SCHHHHHHHHHHHTTCCSSSSCCEEEES
T ss_pred CCHHHHHHHHHHhCCCeeCCcEEEEEEc
Confidence 57899999998544 5599999999987
No 48
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=74.11 E-value=0.93 Score=27.59 Aligned_cols=27 Identities=15% Similarity=0.091 Sum_probs=22.5
Q ss_pred CCHHHHHHHhcCCC-Ccccc-cccceeee
Q psy16924 2 GDRPAAERACKDPN-PIIDG-RKANVNLA 28 (94)
Q Consensus 2 ~D~eaA~rAc~dpn-PiIDG-RrANcNLA 28 (94)
.+.++|++|++.-| -.|+| |+-.|++|
T Consensus 62 ~~~~~A~~Ai~~lng~~~~g~r~l~V~~a 90 (100)
T 3ns6_A 62 GSMNDAKKIIKSFHGKRLDLKHRLFLYTM 90 (100)
T ss_dssp SSHHHHHHHHHHHTTCBSSSSCBCEEEES
T ss_pred CCHHHHHHHHHHhCCcccCCCeEEEEEEC
Confidence 57899999998655 56899 99999987
No 49
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=74.03 E-value=2.3 Score=25.83 Aligned_cols=28 Identities=21% Similarity=0.168 Sum_probs=23.3
Q ss_pred CCHHHHHHHhcCCCCcccccccceeeee
Q psy16924 2 GDRPAAERACKDPNPIIDGRKANVNLAI 29 (94)
Q Consensus 2 ~D~eaA~rAc~dpnPiIDGRrANcNLA~ 29 (94)
.+.++|++|++.-.-.|+||+..|..+.
T Consensus 65 ~~~~~a~~A~~~~~~~~~gr~i~v~~~~ 92 (104)
T 1wg5_A 65 ASQEIAEKALKKHKERIGHRYIEIFKSS 92 (104)
T ss_dssp SSHHHHHHHHTTTTCCSSSSCCEEEEEC
T ss_pred CCHHHHHHHHHhCcchhCCcEEEEEECC
Confidence 5789999999984467999999998873
No 50
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=73.99 E-value=1.3 Score=26.52 Aligned_cols=27 Identities=15% Similarity=0.203 Sum_probs=22.4
Q ss_pred CCHHHHHHHhcCCC-Ccccccccceeeee
Q psy16924 2 GDRPAAERACKDPN-PIIDGRKANVNLAI 29 (94)
Q Consensus 2 ~D~eaA~rAc~dpn-PiIDGRrANcNLA~ 29 (94)
.+.++|++|++. | -.|+||+-.|..|.
T Consensus 66 ~~~~~a~~a~~~-~~~~~~g~~l~V~~a~ 93 (105)
T 2dh8_A 66 KDPNCVGTVLAS-RPHTLDGRNIDPKPCT 93 (105)
T ss_dssp SSTTHHHHHHHH-CSEEETTEEEBCCCSC
T ss_pred CCHHHHHHHHHh-CCCeECCEEEEEEEcc
Confidence 578899999998 5 45999999988874
No 51
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=73.83 E-value=0.78 Score=28.60 Aligned_cols=27 Identities=33% Similarity=0.340 Sum_probs=22.5
Q ss_pred CCHHHHHHHhcCCC-Ccccccccceeee
Q psy16924 2 GDRPAAERACKDPN-PIIDGRKANVNLA 28 (94)
Q Consensus 2 ~D~eaA~rAc~dpn-PiIDGRrANcNLA 28 (94)
.+.|+|++|++.-| -.|+||+-.|..|
T Consensus 53 ~~~~~A~~Ai~~l~~~~~~g~~i~V~~a 80 (115)
T 4f25_A 53 ETQEAAERAIEKMNGMLLNDRKVFVGRF 80 (115)
T ss_dssp SCHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCHHHHHHHHHHcCCCEECCEEEEEEEC
Confidence 58899999998543 5699999999886
No 52
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=73.62 E-value=1.7 Score=27.21 Aligned_cols=29 Identities=28% Similarity=0.357 Sum_probs=23.8
Q ss_pred CCCHHHHHHHhcCCC-Ccccccccceeeee
Q psy16924 1 MGDRPAAERACKDPN-PIIDGRKANVNLAI 29 (94)
Q Consensus 1 m~D~eaA~rAc~dpn-PiIDGRrANcNLA~ 29 (94)
+.+.++|++|++.-| -.|+||+-.|..|-
T Consensus 55 F~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 84 (116)
T 2fy1_A 55 FENPADAKNAAKDMNGKSLHGKAIKVEQAK 84 (116)
T ss_dssp CSSHHHHHHHHHHCSSCBCSSSBCEEEECC
T ss_pred ECCHHHHHHHHHHhCCCEECCEEEEEEECC
Confidence 468899999998655 45999999999884
No 53
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=73.35 E-value=1.7 Score=25.27 Aligned_cols=27 Identities=33% Similarity=0.532 Sum_probs=22.0
Q ss_pred CCHHHHHHHhcCCC-Ccccccccceeee
Q psy16924 2 GDRPAAERACKDPN-PIIDGRKANVNLA 28 (94)
Q Consensus 2 ~D~eaA~rAc~dpn-PiIDGRrANcNLA 28 (94)
.+.++|++|++.-| -.|+||+-.|.+|
T Consensus 56 ~~~~~a~~a~~~l~g~~~~g~~l~v~~a 83 (92)
T 2dgv_A 56 ESPEVAERACRMMNGMKLSGREIDVRID 83 (92)
T ss_dssp SSHHHHHHHHHHHTTCCBTTBCCCCEEC
T ss_pred CCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 57889999998544 4599999999887
No 54
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=73.34 E-value=2.4 Score=25.23 Aligned_cols=29 Identities=24% Similarity=0.088 Sum_probs=23.5
Q ss_pred CCHHHHHHHhcCCC-Ccccccccceeeeec
Q psy16924 2 GDRPAAERACKDPN-PIIDGRKANVNLAIL 30 (94)
Q Consensus 2 ~D~eaA~rAc~dpn-PiIDGRrANcNLA~L 30 (94)
.+.++|++|++.-| -.|+||+-.|..|.-
T Consensus 65 ~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 94 (105)
T 1x5u_A 65 LSEEDADYAIKIMDMIKLYGKPIRVNKASA 94 (105)
T ss_dssp SSHHHHHHHHHHSSSCBCSSCBCEEEETTT
T ss_pred CCHHHHHHHHHHhCCCeECCeEEEEEECCC
Confidence 57899999999654 569999999998743
No 55
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=73.33 E-value=1.5 Score=27.15 Aligned_cols=28 Identities=14% Similarity=0.179 Sum_probs=23.8
Q ss_pred CCCHHHHHHHhcCCC-Ccccccccceeee
Q psy16924 1 MGDRPAAERACKDPN-PIIDGRKANVNLA 28 (94)
Q Consensus 1 m~D~eaA~rAc~dpn-PiIDGRrANcNLA 28 (94)
+.+.++|++|++.-| -.|+||+-.|++|
T Consensus 71 f~~~~~A~~Ai~~lng~~~~gr~l~v~~a 99 (112)
T 2dit_A 71 FRDPEEADYCIQTLDGRWFGGRQITAQAW 99 (112)
T ss_dssp CSCHHHHHHHHHHSTTCEETTEECEEEEC
T ss_pred ECCHHHHHHHHHHcCCCEECCcEEEEEEe
Confidence 367899999998776 4599999999987
No 56
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=73.09 E-value=1 Score=28.51 Aligned_cols=28 Identities=21% Similarity=0.322 Sum_probs=22.7
Q ss_pred CCCHHHHHHHhc--CCCC-cccccccceeee
Q psy16924 1 MGDRPAAERACK--DPNP-IIDGRKANVNLA 28 (94)
Q Consensus 1 m~D~eaA~rAc~--dpnP-iIDGRrANcNLA 28 (94)
|.|.++|++|++ +-++ .|+||+-.|+.|
T Consensus 58 f~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~~a 88 (104)
T 1wex_A 58 FENIDSAKECVTFAADVPVYIAGQQAFFNYS 88 (104)
T ss_dssp ESSHHHHHHHHHHHHHSCCBSSSSBCEEEEC
T ss_pred ECCHHHHHHHHHHhccCCceECCEEEEEEEc
Confidence 468899999998 4454 599999999987
No 57
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=73.06 E-value=1.6 Score=26.57 Aligned_cols=29 Identities=17% Similarity=0.149 Sum_probs=22.8
Q ss_pred CCHHHHHHHhcCCC-Ccccccccceeeeec
Q psy16924 2 GDRPAAERACKDPN-PIIDGRKANVNLAIL 30 (94)
Q Consensus 2 ~D~eaA~rAc~dpn-PiIDGRrANcNLA~L 30 (94)
.+.++|++|++.-| -.|+||+-.|..|--
T Consensus 69 ~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 98 (109)
T 1x4g_A 69 STHESAAHAIVSVNGTTIEGHVVKCYWGKE 98 (109)
T ss_dssp SSHHHHHHHHHHHTTCEETTEECEEECCCC
T ss_pred CCHHHHHHHHHHcCCCEECCcEEEEEecCC
Confidence 57889999997543 469999999998743
No 58
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=72.96 E-value=1.3 Score=25.22 Aligned_cols=27 Identities=22% Similarity=0.304 Sum_probs=22.0
Q ss_pred CCHHHHHHHhcCCC-Ccccccccceeee
Q psy16924 2 GDRPAAERACKDPN-PIIDGRKANVNLA 28 (94)
Q Consensus 2 ~D~eaA~rAc~dpn-PiIDGRrANcNLA 28 (94)
.+.++|++|++.-| -.|+||+-.|+.|
T Consensus 51 ~~~~~a~~a~~~l~g~~~~g~~l~v~~a 78 (83)
T 3md1_A 51 TSQDDAQNAMDSMQGQDLNGRPLRINWA 78 (83)
T ss_dssp SCHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCHHHHHHHHHHhcCCeeCCcEEEEEec
Confidence 57899999998533 5699999998887
No 59
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=72.89 E-value=2 Score=26.79 Aligned_cols=27 Identities=7% Similarity=0.082 Sum_probs=22.5
Q ss_pred CCHHHHHHHhcCCCCcccccccceeee
Q psy16924 2 GDRPAAERACKDPNPIIDGRKANVNLA 28 (94)
Q Consensus 2 ~D~eaA~rAc~dpnPiIDGRrANcNLA 28 (94)
.+.++|.+|++...-.|+||+-.|+.+
T Consensus 60 ~~~e~a~~Ai~~~~~~~~gr~l~V~~~ 86 (103)
T 1s79_A 60 DSIESAKKFVETPGQKYKETDLLILFK 86 (103)
T ss_dssp SSHHHHHHHHTSSCCCCTTTTCEEEEH
T ss_pred CCHHHHHHHHHcCCCEECCEEEEEEEc
Confidence 578999999995556799999988864
No 60
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=72.87 E-value=1 Score=26.52 Aligned_cols=27 Identities=15% Similarity=0.118 Sum_probs=22.2
Q ss_pred CCHHHHHHHhcCCC-Ccccccccceeee
Q psy16924 2 GDRPAAERACKDPN-PIIDGRKANVNLA 28 (94)
Q Consensus 2 ~D~eaA~rAc~dpn-PiIDGRrANcNLA 28 (94)
.+.++|++|++.-| -.|+||+-.|+.|
T Consensus 62 ~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 89 (96)
T 2e44_A 62 SSKDQARQALDKLNGFQLENFTLKVAYI 89 (96)
T ss_dssp SSHHHHHHHHHHHTTCBCSSCBCEEEEC
T ss_pred CCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 57889999998655 4589999999887
No 61
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=72.81 E-value=1.5 Score=26.08 Aligned_cols=28 Identities=36% Similarity=0.446 Sum_probs=22.7
Q ss_pred CCHHHHHHHhcCCC-Ccccccccceeeee
Q psy16924 2 GDRPAAERACKDPN-PIIDGRKANVNLAI 29 (94)
Q Consensus 2 ~D~eaA~rAc~dpn-PiIDGRrANcNLA~ 29 (94)
.+.++|++|++.-| -.|+||+-.|.+|-
T Consensus 59 ~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 87 (99)
T 2cpd_A 59 SNREDAVEAMKALNGKVLDGSPIEVTLAK 87 (99)
T ss_dssp SSHHHHHHHHHHHSSEEETTEEEEEECCC
T ss_pred CCHHHHHHHHHHhCCCEeCCcEEEEEECC
Confidence 57899999999555 45999999998873
No 62
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=72.56 E-value=0.87 Score=28.89 Aligned_cols=29 Identities=21% Similarity=0.160 Sum_probs=23.9
Q ss_pred CCCHHHHHHHhcCCC-Ccccccccceeeee
Q psy16924 1 MGDRPAAERACKDPN-PIIDGRKANVNLAI 29 (94)
Q Consensus 1 m~D~eaA~rAc~dpn-PiIDGRrANcNLA~ 29 (94)
+.|.++|.+|++.-| -.++||+-.|+.|-
T Consensus 63 f~~~~~A~~Ai~~lnG~~~~Gr~i~v~~a~ 92 (105)
T 2pe8_A 63 FERVESAIKAVVDLNGRYFGGRVVKACFYN 92 (105)
T ss_dssp ESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred ECCHHHHHHHHHHHCCCEECCcEEEEEEcC
Confidence 357899999999765 56999999999873
No 63
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=72.46 E-value=1.9 Score=25.22 Aligned_cols=28 Identities=29% Similarity=0.339 Sum_probs=22.8
Q ss_pred CCHHHHHHHhcCCC-Ccccccccceeeee
Q psy16924 2 GDRPAAERACKDPN-PIIDGRKANVNLAI 29 (94)
Q Consensus 2 ~D~eaA~rAc~dpn-PiIDGRrANcNLA~ 29 (94)
.+.++|++|++.-| -.|+||+-.|..|-
T Consensus 50 ~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 78 (90)
T 2dnq_A 50 EDKTAAEDAIRNLHHYKLHGVNINVEASK 78 (90)
T ss_dssp SSHHHHHHHHHHHTTCBCSSCBCEEECSS
T ss_pred CCHHHHHHHHHHhcCCccCCcEEEEEECC
Confidence 57899999998555 45999999998874
No 64
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=71.69 E-value=3 Score=24.59 Aligned_cols=29 Identities=17% Similarity=0.159 Sum_probs=23.5
Q ss_pred CCHHHHHHHhcCCC-Ccccccccceeeeec
Q psy16924 2 GDRPAAERACKDPN-PIIDGRKANVNLAIL 30 (94)
Q Consensus 2 ~D~eaA~rAc~dpn-PiIDGRrANcNLA~L 30 (94)
.+.++|++|++.-| -.|+||+-.|..|--
T Consensus 58 ~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~ 87 (99)
T 1whw_A 58 MFPEHAVKAYAEVDGQVFQGRMLHVLPSTI 87 (99)
T ss_dssp SSHHHHHHHHHHTTTEESSSCEEEEEECCC
T ss_pred CCHHHHHHHHHHhCCCEECCcEEEEEEcCC
Confidence 57899999997665 459999999998743
No 65
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=71.49 E-value=1.5 Score=27.40 Aligned_cols=27 Identities=22% Similarity=0.348 Sum_probs=22.4
Q ss_pred CCHHHHHHHhcCCCCcccccccceeee
Q psy16924 2 GDRPAAERACKDPNPIIDGRKANVNLA 28 (94)
Q Consensus 2 ~D~eaA~rAc~dpnPiIDGRrANcNLA 28 (94)
.+.++|++|++.-.-.|+||+-.|..|
T Consensus 137 ~~~~~a~~A~~~~~~~~~g~~i~V~~a 163 (167)
T 2cjk_A 137 DSADAVDRVCQNKFIDFKDRKIEIKRA 163 (167)
T ss_dssp SSHHHHHHHHHCSEECSSSSCEEEEEC
T ss_pred CCHHHHHHHHhCCCEEeCCeEEEEeec
Confidence 578999999995445699999999886
No 66
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=71.08 E-value=1.7 Score=25.58 Aligned_cols=27 Identities=22% Similarity=0.377 Sum_probs=22.8
Q ss_pred CCHHHHHHHhcCCC-Ccccccccceeee
Q psy16924 2 GDRPAAERACKDPN-PIIDGRKANVNLA 28 (94)
Q Consensus 2 ~D~eaA~rAc~dpn-PiIDGRrANcNLA 28 (94)
.+.++|++|++.-| -.|+||+-.|.+|
T Consensus 61 ~~~~~a~~A~~~l~g~~~~g~~l~v~~a 88 (96)
T 1fjc_A 61 KSEADAEKNLEEKQGAEIDGRSVSLYYT 88 (96)
T ss_dssp SSHHHHHHHHHHTTEEEETTEEEEEEEC
T ss_pred CCHHHHHHHHHHhCCCEECCeEEEEEEc
Confidence 57899999999666 4599999888887
No 67
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=70.90 E-value=2.8 Score=26.18 Aligned_cols=28 Identities=11% Similarity=0.024 Sum_probs=22.8
Q ss_pred CCHHHHHHHhcCCCCcccccccceeeee
Q psy16924 2 GDRPAAERACKDPNPIIDGRKANVNLAI 29 (94)
Q Consensus 2 ~D~eaA~rAc~dpnPiIDGRrANcNLA~ 29 (94)
.+.++|++|++--.-.|+||+..|+.|.
T Consensus 75 ~~~~~a~~Al~~~g~~~~gr~i~V~~a~ 102 (124)
T 1wel_A 75 RNEADYKAALCRHKQYMGNRFIQVHPIT 102 (124)
T ss_dssp SSSHHHHHHHTSCSBCSTTSCBEEEEEC
T ss_pred CCHHHHHHHHHhCCCeECCcEEEEEECC
Confidence 5788999999933366999999999873
No 68
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=70.78 E-value=4.4 Score=24.44 Aligned_cols=30 Identities=13% Similarity=0.032 Sum_probs=23.9
Q ss_pred CCCHHHHHHHhcCCC-Ccccccccceeeeec
Q psy16924 1 MGDRPAAERACKDPN-PIIDGRKANVNLAIL 30 (94)
Q Consensus 1 m~D~eaA~rAc~dpn-PiIDGRrANcNLA~L 30 (94)
+.+.++|++|++.-| -.|+||+-.|..|--
T Consensus 74 f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~~ 104 (115)
T 2cpx_A 74 FPNKEIAWQALHLVNGYKLYGKILVIEFGKN 104 (115)
T ss_dssp CSSHHHHHHHHHHSTTCBCSSCBCEEEECCC
T ss_pred ECCHHHHHHHHHHhCCCEeCCcEEEEEEccC
Confidence 468899999998544 558999999999843
No 69
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=70.75 E-value=2.4 Score=25.28 Aligned_cols=28 Identities=25% Similarity=0.275 Sum_probs=23.0
Q ss_pred CCHHHHHHHhcCCC-Ccccccccceeeee
Q psy16924 2 GDRPAAERACKDPN-PIIDGRKANVNLAI 29 (94)
Q Consensus 2 ~D~eaA~rAc~dpn-PiIDGRrANcNLA~ 29 (94)
.+.++|++|++.-| -.|+||+-.|.+|-
T Consensus 63 ~~~~~A~~A~~~l~g~~~~g~~l~V~~a~ 91 (103)
T 2d9p_A 63 SSPEEATKAVTEMNGRIVATKPLYVALAQ 91 (103)
T ss_dssp SSHHHHHHHHHHHTTCBSSSSBCEEEECS
T ss_pred CCHHHHHHHHHHhCCCEeCCcEEEEEEec
Confidence 57899999998544 45899999999884
No 70
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=70.21 E-value=2.3 Score=28.16 Aligned_cols=27 Identities=22% Similarity=0.142 Sum_probs=23.0
Q ss_pred CCHHHHHHHhcCCCCcccccccceeee
Q psy16924 2 GDRPAAERACKDPNPIIDGRKANVNLA 28 (94)
Q Consensus 2 ~D~eaA~rAc~dpnPiIDGRrANcNLA 28 (94)
.+.|+|++|++.-+-.|+||.-.|..|
T Consensus 92 ~~~e~A~~Al~~~~~~l~gR~I~V~~a 118 (126)
T 2hgm_A 92 ASQELAEKALGKHKERIGHRYIEVFKS 118 (126)
T ss_dssp SSTTHHHHHHTTTTCCBTTBCCCCEEE
T ss_pred CCHHHHHHHHHHCCCEECCEEEEEEEC
Confidence 578899999997667899999888876
No 71
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=70.05 E-value=2.4 Score=25.12 Aligned_cols=29 Identities=28% Similarity=0.283 Sum_probs=23.3
Q ss_pred CCCHHHHHHHhcCCC-Ccccccccceeeee
Q psy16924 1 MGDRPAAERACKDPN-PIIDGRKANVNLAI 29 (94)
Q Consensus 1 m~D~eaA~rAc~dpn-PiIDGRrANcNLA~ 29 (94)
+.+.++|++|++.-| -.|+||+-.|..|.
T Consensus 57 f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 86 (104)
T 1p1t_A 57 YQDQETALSAMRNLNGREFSGRALRVDNAA 86 (104)
T ss_dssp CSCHHHHHHHHHHSSSBSCSSSCBEEEETT
T ss_pred ECCHHHHHHHHHHhCCCeeCCcEEEEEeCC
Confidence 467899999998555 55899999998873
No 72
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=70.05 E-value=2.2 Score=24.73 Aligned_cols=28 Identities=18% Similarity=0.099 Sum_probs=21.5
Q ss_pred CCHHHHHHHhcCCC-Ccccccccceeeeec
Q psy16924 2 GDRPAAERACKDPN-PIIDGRKANVNLAIL 30 (94)
Q Consensus 2 ~D~eaA~rAc~dpn-PiIDGRrANcNLA~L 30 (94)
.+.+ |++|++.-| -.|+||+-.|..|.-
T Consensus 51 ~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~ 79 (90)
T 2ki2_A 51 QEES-VSEAIAKLDNTDFMGRTIRVTEANP 79 (90)
T ss_dssp CTTH-HHHHHHTSCSSCCSSSSCSEEEC--
T ss_pred CCHH-HHHHHHHhCCCEECCeEEEEEEcCC
Confidence 4677 999998765 459999999999754
No 73
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=70.00 E-value=1.1 Score=26.60 Aligned_cols=27 Identities=15% Similarity=0.158 Sum_probs=22.3
Q ss_pred CCHHHHHHHhcCCC-Ccccccccceeee
Q psy16924 2 GDRPAAERACKDPN-PIIDGRKANVNLA 28 (94)
Q Consensus 2 ~D~eaA~rAc~dpn-PiIDGRrANcNLA 28 (94)
.+.++|++|++.-| -.|+||+-.|..|
T Consensus 52 ~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 79 (96)
T 2x1f_A 52 RDLESSASAVRNLNGYQLGSRFLKCGYS 79 (96)
T ss_dssp SSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCHHHHHHHHHHhCCCeECCeEEEEEEc
Confidence 57899999998544 5699999999987
No 74
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=69.82 E-value=1 Score=29.62 Aligned_cols=28 Identities=14% Similarity=0.083 Sum_probs=23.9
Q ss_pred CCCHHHHHHHhcCCC-Ccccccccceeee
Q psy16924 1 MGDRPAAERACKDPN-PIIDGRKANVNLA 28 (94)
Q Consensus 1 m~D~eaA~rAc~dpn-PiIDGRrANcNLA 28 (94)
|.|.++|++|++.-| =.++||+-.++.|
T Consensus 50 y~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A 78 (89)
T 2wbr_A 50 YTTREEANKAQMALNNCVLANTTIFAESP 78 (89)
T ss_dssp ESSHHHHHHHHHHHTTEEETTEEEEEECC
T ss_pred ECCHHHHHHHHHHhcCCEECCcEEEEEEC
Confidence 468899999999776 4599999999988
No 75
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=69.49 E-value=1.3 Score=29.45 Aligned_cols=28 Identities=18% Similarity=0.329 Sum_probs=23.1
Q ss_pred CCCHHHHHHHhcCC--C-Ccccccccceeee
Q psy16924 1 MGDRPAAERACKDP--N-PIIDGRKANVNLA 28 (94)
Q Consensus 1 m~D~eaA~rAc~dp--n-PiIDGRrANcNLA 28 (94)
|.|.++|++|++.- + ..|+||+-.|+.|
T Consensus 74 F~~~e~A~~Ai~~l~~~~~~l~Gr~l~V~~a 104 (119)
T 2ad9_A 74 MNTEEAANTMVNYYTSVTPVLRGQPIYIQFS 104 (119)
T ss_dssp CSCHHHHHHHHHHHHHHCCCBTTBCCEEEEC
T ss_pred ECCHHHHHHHHHHhccCCceECCeEEEEEEc
Confidence 57889999999833 3 4699999999997
No 76
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=68.98 E-value=3.1 Score=26.05 Aligned_cols=30 Identities=27% Similarity=0.225 Sum_probs=24.4
Q ss_pred CCHHHHHHHhcCCC-CcccccccceeeeecC
Q psy16924 2 GDRPAAERACKDPN-PIIDGRKANVNLAILG 31 (94)
Q Consensus 2 ~D~eaA~rAc~dpn-PiIDGRrANcNLA~LG 31 (94)
.+.++|++|++.-| -.|+||+-.|.+|--.
T Consensus 92 ~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 122 (139)
T 1u6f_A 92 QSGSSAQQAIAGLNGFNILNKRLKVALAASG 122 (139)
T ss_dssp SSHHHHHHHHHHTTTEECSSCEEEEEESSCC
T ss_pred CCHHHHHHHHHHhCCCEECCeEEEEEECCCC
Confidence 57899999999655 4599999999998543
No 77
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=68.63 E-value=1.2 Score=26.57 Aligned_cols=28 Identities=32% Similarity=0.494 Sum_probs=22.7
Q ss_pred CCHHHHHHHhcCCC-Ccccccccceeeee
Q psy16924 2 GDRPAAERACKDPN-PIIDGRKANVNLAI 29 (94)
Q Consensus 2 ~D~eaA~rAc~dpn-PiIDGRrANcNLA~ 29 (94)
.+.++|++|++.-| -.|+||+-.|..|.
T Consensus 63 ~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 91 (103)
T 2cq3_A 63 ENSADADRAREKLHGTVVEGRKIEVNNAT 91 (103)
T ss_dssp SCHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCHHHHHHHHHHhCCCEECCEEEEEEEcc
Confidence 57899999998544 45999999998873
No 78
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=68.26 E-value=2.6 Score=25.58 Aligned_cols=29 Identities=21% Similarity=0.329 Sum_probs=23.0
Q ss_pred CCCHHHHHHHhcCCC-Ccccccccceeeee
Q psy16924 1 MGDRPAAERACKDPN-PIIDGRKANVNLAI 29 (94)
Q Consensus 1 m~D~eaA~rAc~dpn-PiIDGRrANcNLA~ 29 (94)
+.+.++|++|++.-| -.|+||+-.|.+|-
T Consensus 69 f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~ 98 (110)
T 1wf1_A 69 YSNERHARAAVLGENGRVLAGQTLDINMAG 98 (110)
T ss_dssp CSSSHHHHHHHHHHTTCEETTEECCEEESC
T ss_pred ECCHHHHHHHHHHcCCCEECCeEEEEEECC
Confidence 357889999997544 45999999999874
No 79
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=68.17 E-value=3.8 Score=24.33 Aligned_cols=28 Identities=18% Similarity=0.322 Sum_probs=22.9
Q ss_pred CCHHHHHHHhcCCCC-c-ccccccceeeee
Q psy16924 2 GDRPAAERACKDPNP-I-IDGRKANVNLAI 29 (94)
Q Consensus 2 ~D~eaA~rAc~dpnP-i-IDGRrANcNLA~ 29 (94)
.+.++|++|++.-|- . |+||+-.|..|.
T Consensus 59 ~~~~~a~~A~~~l~g~~~~~g~~l~v~~a~ 88 (104)
T 2dhg_A 59 TDELEQKRALTECQGAVGLGSKPVRLSVAI 88 (104)
T ss_dssp SCHHHHHHHHHHTTTCCSSSSSCCCCCBCC
T ss_pred CCHHHHHHHHHHccCCcccCCEeEEEEEcc
Confidence 578999999995553 4 999999999884
No 80
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=67.93 E-value=2.3 Score=24.42 Aligned_cols=27 Identities=15% Similarity=0.233 Sum_probs=21.1
Q ss_pred CCHHHHHHHhcCCCCcccccccceeee
Q psy16924 2 GDRPAAERACKDPNPIIDGRKANVNLA 28 (94)
Q Consensus 2 ~D~eaA~rAc~dpnPiIDGRrANcNLA 28 (94)
.+.++|++|+.--+-.|+||+-.|..|
T Consensus 56 ~~~~~a~~a~~~~g~~~~g~~l~V~~a 82 (89)
T 3ucg_A 56 SDKESVRTSLALDESLFRGRQIKVIPK 82 (89)
T ss_dssp SSTHHHHHHGGGTTCEETTEECEEEET
T ss_pred CCHHHHHHHHhcCCCEECCcEEEEEEc
Confidence 578999999942335699999998876
No 81
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=67.71 E-value=1.8 Score=25.83 Aligned_cols=28 Identities=29% Similarity=0.073 Sum_probs=23.0
Q ss_pred CCHHHHHHHhcCCC-Ccccccccceeeee
Q psy16924 2 GDRPAAERACKDPN-PIIDGRKANVNLAI 29 (94)
Q Consensus 2 ~D~eaA~rAc~dpn-PiIDGRrANcNLA~ 29 (94)
.+.++|++|++.-| -.|+||+-.|..|-
T Consensus 65 ~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 93 (103)
T 2cq0_A 65 HRREDAARAIAGVSGFGYDHLILNVEWAK 93 (103)
T ss_dssp SSHHHHHHHHHHTTTCEETTEECEEEESS
T ss_pred CCHHHHHHHHHHcCCCeeCCcEEEEEECC
Confidence 57899999999555 56999999999873
No 82
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=66.80 E-value=4.9 Score=23.70 Aligned_cols=28 Identities=25% Similarity=0.202 Sum_probs=22.4
Q ss_pred CCHHHHHHHhcCCCCcccccccceeeee
Q psy16924 2 GDRPAAERACKDPNPIIDGRKANVNLAI 29 (94)
Q Consensus 2 ~D~eaA~rAc~dpnPiIDGRrANcNLA~ 29 (94)
.|.++|++|++--.-.|+||+-.|..|-
T Consensus 60 ~~~~~a~~A~~~~~~~~~g~~l~V~~a~ 87 (99)
T 2dgs_A 60 EDEQSVDQAVNMHFHDIMGKKVEVKRAE 87 (99)
T ss_dssp SSHHHHHHHHHHCCCBSSSCBCEEEECC
T ss_pred CCHHHHHHHHHhCCCEECCeEEEEEECC
Confidence 5789999999822356999999998874
No 83
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=66.46 E-value=1.9 Score=27.82 Aligned_cols=28 Identities=14% Similarity=-0.040 Sum_probs=23.5
Q ss_pred CCHHHHHHHhcCCC-Ccccccccceeeee
Q psy16924 2 GDRPAAERACKDPN-PIIDGRKANVNLAI 29 (94)
Q Consensus 2 ~D~eaA~rAc~dpn-PiIDGRrANcNLA~ 29 (94)
.+.|+|++|++.-| -.|+||+-.|..|-
T Consensus 75 ~~~e~A~~Ai~~lng~~l~Gr~i~V~~a~ 103 (111)
T 2jvr_A 75 PSEEILVEALERLNNIEFRGSVITVERDD 103 (111)
T ss_dssp SSHHHHHHHHHHTTTEEETTEEEEEEESC
T ss_pred CCHHHHHHHHHHcCCCEECCeEEEEEECC
Confidence 57899999998766 45999999998874
No 84
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=66.41 E-value=3.7 Score=24.30 Aligned_cols=28 Identities=25% Similarity=0.298 Sum_probs=22.8
Q ss_pred CCCHHHHHHHhcCCC-Ccccccccceeee
Q psy16924 1 MGDRPAAERACKDPN-PIIDGRKANVNLA 28 (94)
Q Consensus 1 m~D~eaA~rAc~dpn-PiIDGRrANcNLA 28 (94)
+.+.++|++|++.-| -.|+||+-.|.+|
T Consensus 61 f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 89 (102)
T 2fc8_A 61 FNSEEDAKAAKEAMEDGEIDGNKVTLDWA 89 (102)
T ss_dssp CSSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred ECCHHHHHHHHHHhCCCeECCeEEEEEEe
Confidence 357899999998543 5699999999987
No 85
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=66.10 E-value=1.7 Score=25.94 Aligned_cols=28 Identities=18% Similarity=0.173 Sum_probs=22.4
Q ss_pred CCHHHHHHHhcCCC-Ccccccccceeeee
Q psy16924 2 GDRPAAERACKDPN-PIIDGRKANVNLAI 29 (94)
Q Consensus 2 ~D~eaA~rAc~dpn-PiIDGRrANcNLA~ 29 (94)
.+.++|++|++.-| -.|+||+-.|..|.
T Consensus 73 ~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 101 (106)
T 1p27_B 73 ETYKEAQAAMEGLNGQDLMGQPISVDWCF 101 (106)
T ss_dssp SCHHHHHHHHHHHTTCBSSSSBCEEEESE
T ss_pred CCHHHHHHHHHHhcCCEECCcEEEEEeec
Confidence 57889999998543 46999999998873
No 86
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=66.03 E-value=2.2 Score=27.53 Aligned_cols=28 Identities=25% Similarity=0.215 Sum_probs=23.5
Q ss_pred CCHHHHHHHhcCCC-Ccccccccceeeee
Q psy16924 2 GDRPAAERACKDPN-PIIDGRKANVNLAI 29 (94)
Q Consensus 2 ~D~eaA~rAc~dpn-PiIDGRrANcNLA~ 29 (94)
.+.++|++|++.-| -.|+||+-.|.+|-
T Consensus 89 ~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 117 (156)
T 1h2v_Z 89 YSRADAENAMRYINGTRLDDRIIRTDWDA 117 (156)
T ss_dssp SSHHHHHHHHHHTTTSEETTEECEEEEES
T ss_pred CCHHHHHHHHHHhCCCEECCeEEEEEECC
Confidence 57899999999654 56999999999984
No 87
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=66.01 E-value=1.9 Score=25.66 Aligned_cols=27 Identities=22% Similarity=0.339 Sum_probs=22.3
Q ss_pred CCHHHHHHHhcCCC-Ccccccccceeee
Q psy16924 2 GDRPAAERACKDPN-PIIDGRKANVNLA 28 (94)
Q Consensus 2 ~D~eaA~rAc~dpn-PiIDGRrANcNLA 28 (94)
.+.++|++|++.-| -.|+||+-.|..|
T Consensus 57 ~~~~~a~~Ai~~l~g~~~~g~~l~v~~a 84 (97)
T 1x5p_A 57 EKMESADQAVAELNGTQVESVQLKVNIA 84 (97)
T ss_dssp SSHHHHHHHHHHTTTEEETTEEEEEECC
T ss_pred CCHHHHHHHHHHhCCCeECCeEEEEEEC
Confidence 57899999998655 4589999998887
No 88
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=65.85 E-value=6.2 Score=23.49 Aligned_cols=27 Identities=15% Similarity=0.245 Sum_probs=22.2
Q ss_pred CCHHHHHHHhcCCC-Ccccccccceeeee
Q psy16924 2 GDRPAAERACKDPN-PIIDGRKANVNLAI 29 (94)
Q Consensus 2 ~D~eaA~rAc~dpn-PiIDGRrANcNLA~ 29 (94)
.+.++|++|+ .-| -.|+||+-.|..|-
T Consensus 64 ~~~~~a~~A~-~l~g~~~~g~~l~V~~a~ 91 (103)
T 2dng_A 64 DEVDSLKEAL-TYDGALLGDRSLRVDIAE 91 (103)
T ss_dssp SSHHHHHHHG-GGTTCEETTEECEEEECC
T ss_pred CCHHHHHHHH-hhCCCeECCeEEEEEEec
Confidence 5789999999 455 56999999999874
No 89
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=65.84 E-value=1.6 Score=25.95 Aligned_cols=27 Identities=15% Similarity=0.166 Sum_probs=22.1
Q ss_pred CCHHHHHHHhcCCC-Ccccccccceeee
Q psy16924 2 GDRPAAERACKDPN-PIIDGRKANVNLA 28 (94)
Q Consensus 2 ~D~eaA~rAc~dpn-PiIDGRrANcNLA 28 (94)
.+.++|++|++.-| -.|+||+-.|.+|
T Consensus 66 ~~~~~a~~A~~~l~g~~~~g~~l~v~~a 93 (100)
T 2do4_A 66 ENESQASQAVMKMDGMTIKENIIKVAIS 93 (100)
T ss_dssp SSHHHHHHHHHHHTTEESSSCEEEEEEC
T ss_pred CCHHHHHHHHHHhCCCEECCEEEEEEEC
Confidence 57899999997544 5699999998887
No 90
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=65.77 E-value=1.6 Score=26.89 Aligned_cols=28 Identities=32% Similarity=0.520 Sum_probs=22.6
Q ss_pred CCCHHHHHHHhcCCC-Ccccccccceeee
Q psy16924 1 MGDRPAAERACKDPN-PIIDGRKANVNLA 28 (94)
Q Consensus 1 m~D~eaA~rAc~dpn-PiIDGRrANcNLA 28 (94)
+.+.++|++|++.-| -.|+||+-.|..|
T Consensus 76 f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 104 (109)
T 2err_A 76 FENSADADRAREKLHGTVVEGRKIEVNNA 104 (109)
T ss_dssp CCCSHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred ECCHHHHHHHHHHcCCCEECCEEEEEEEC
Confidence 357889999998544 4599999999887
No 91
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=65.22 E-value=2.4 Score=25.30 Aligned_cols=29 Identities=31% Similarity=0.366 Sum_probs=22.9
Q ss_pred CCHHHHHHHhcCCC-Ccccccccceeeeec
Q psy16924 2 GDRPAAERACKDPN-PIIDGRKANVNLAIL 30 (94)
Q Consensus 2 ~D~eaA~rAc~dpn-PiIDGRrANcNLA~L 30 (94)
.+.++|++|++.-| -.|+||+-.|.+|--
T Consensus 63 ~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~ 92 (103)
T 2dnm_A 63 HDRRDAQDAEAAMDGAELDGRELRVQVARY 92 (103)
T ss_dssp SSSSHHHHHHHHHSSCCBTTBCCEEEECSS
T ss_pred CCHHHHHHHHHHcCCCEECCcEEEEEECCc
Confidence 56788999988443 459999999999854
No 92
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=65.09 E-value=3.1 Score=24.29 Aligned_cols=29 Identities=24% Similarity=0.328 Sum_probs=23.4
Q ss_pred CCHHHHHHHhcCCC-Ccccccccceeeeec
Q psy16924 2 GDRPAAERACKDPN-PIIDGRKANVNLAIL 30 (94)
Q Consensus 2 ~D~eaA~rAc~dpn-PiIDGRrANcNLA~L 30 (94)
.+.++|++|++.-| -.|+||+-.|.+|--
T Consensus 51 ~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 80 (90)
T 2dnp_A 51 EKEADAKAAIAQLNGKEVKGKRINVELSTK 80 (90)
T ss_dssp SCHHHHHHHHHHHTTCEETTEECEEEESCC
T ss_pred CCHHHHHHHHHHhCCCEECCcEEEEEECCC
Confidence 57899999998544 569999999999843
No 93
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=64.72 E-value=2.5 Score=27.72 Aligned_cols=28 Identities=7% Similarity=0.058 Sum_probs=23.1
Q ss_pred CCHHHHHHHhcCCC-Ccccccccceeeee
Q psy16924 2 GDRPAAERACKDPN-PIIDGRKANVNLAI 29 (94)
Q Consensus 2 ~D~eaA~rAc~dpn-PiIDGRrANcNLA~ 29 (94)
.|.++|.+|++.-| -.|+||+-.|+.|-
T Consensus 80 ~~~~~A~~Ai~~lng~~l~gr~l~V~~a~ 108 (127)
T 2a3j_A 80 ATQESAQAFVEAFQGYPFQGNPLVITFSE 108 (127)
T ss_dssp SSHHHHHHHHHHSTTCCCTTSCCEEEECC
T ss_pred CCHHHHHHHHHHHCCCEeCCCEEEEEEcc
Confidence 57899999998666 45899999998874
No 94
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=64.69 E-value=2.2 Score=28.54 Aligned_cols=27 Identities=15% Similarity=0.247 Sum_probs=23.3
Q ss_pred CCHHHHHHHhcCCC-Ccccccccceeee
Q psy16924 2 GDRPAAERACKDPN-PIIDGRKANVNLA 28 (94)
Q Consensus 2 ~D~eaA~rAc~dpn-PiIDGRrANcNLA 28 (94)
.|.++|++|++.-| -.|+||+-.|+.|
T Consensus 107 ~~~~~A~~Ai~~lng~~~~Gr~l~V~~a 134 (156)
T 3n9u_C 107 ASENSVHKLLELLPGKVLNGEKVDVRPA 134 (156)
T ss_dssp SCHHHHHHHHHHSTTCEETTEECEEEEC
T ss_pred CCHHHHHHHHHHcCCCEECCeEeEEEEc
Confidence 57899999999755 6799999999987
No 95
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=64.64 E-value=2.7 Score=25.90 Aligned_cols=30 Identities=17% Similarity=0.171 Sum_probs=23.9
Q ss_pred CCHHHHHHHhcCCC-CcccccccceeeeecC
Q psy16924 2 GDRPAAERACKDPN-PIIDGRKANVNLAILG 31 (94)
Q Consensus 2 ~D~eaA~rAc~dpn-PiIDGRrANcNLA~LG 31 (94)
.+.++|++|++.-| -.|+||+-.|.+|.--
T Consensus 72 ~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 102 (126)
T 3ex7_B 72 ETYKEAQAAMEGLNGQDLMGQPISVDWCFVR 102 (126)
T ss_dssp SSHHHHHHHHHHHTTCBSSSSBCEEEESEES
T ss_pred CCHHHHHHHHHHhCCCeeCCeEEEEEEecCC
Confidence 57899999997533 5689999999998653
No 96
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=64.59 E-value=1.5 Score=26.81 Aligned_cols=27 Identities=26% Similarity=0.246 Sum_probs=22.3
Q ss_pred CCHHHHHHHhcCCC-Cccccc-ccceeee
Q psy16924 2 GDRPAAERACKDPN-PIIDGR-KANVNLA 28 (94)
Q Consensus 2 ~D~eaA~rAc~dpn-PiIDGR-rANcNLA 28 (94)
.+.++|++|++.-| -.|+|| +-.|++|
T Consensus 69 ~~~~~A~~Ai~~l~g~~~~g~~~l~V~~a 97 (105)
T 2nlw_A 69 ASPAHAVDAVKNADGYKLDKQHTFRVNLF 97 (105)
T ss_dssp CSSSHHHHHHHHCSSEECSTTCEEEEECS
T ss_pred CCHHHHHHHHHHhCCcccCCCceEEEEEc
Confidence 57789999999766 459999 8888887
No 97
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=64.47 E-value=3.2 Score=26.51 Aligned_cols=28 Identities=14% Similarity=0.324 Sum_probs=23.3
Q ss_pred CCHHHHHHHhcCCCCcccccccceeeee
Q psy16924 2 GDRPAAERACKDPNPIIDGRKANVNLAI 29 (94)
Q Consensus 2 ~D~eaA~rAc~dpnPiIDGRrANcNLA~ 29 (94)
.+.++|++|++.-+-.|+||+-.|..|.
T Consensus 154 ~~~~~A~~A~~~~~~~~~G~~i~v~~a~ 181 (196)
T 1l3k_A 154 DDHDSVDKIVIQKYHTVNGHNCEVRKAL 181 (196)
T ss_dssp SSHHHHHHHHHCSCCEETTEECEEEECC
T ss_pred CCHHHHHHHHHhCCcEECCEEEEEEecC
Confidence 5789999999865678999998888873
No 98
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=64.26 E-value=4.6 Score=26.35 Aligned_cols=29 Identities=10% Similarity=0.099 Sum_probs=23.8
Q ss_pred CCCHHHHHHHhcCCCCcccccccceeeee
Q psy16924 1 MGDRPAAERACKDPNPIIDGRKANVNLAI 29 (94)
Q Consensus 1 m~D~eaA~rAc~dpnPiIDGRrANcNLA~ 29 (94)
+.+.++|++|++.-+-.|+||.-.|..|.
T Consensus 75 F~~~~~A~~Al~~~~~~l~gR~i~V~~a~ 103 (123)
T 2dha_A 75 FACEEYAQNALRKHKDLLGKRYIELFRST 103 (123)
T ss_dssp CSSHHHHHHHHTTTTEESSSCEECCEEEC
T ss_pred ECCHHHHHHHHHhCCCeeCCeEEEEEECC
Confidence 46789999999975577999998888873
No 99
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=64.25 E-value=3.4 Score=29.21 Aligned_cols=28 Identities=11% Similarity=0.128 Sum_probs=24.0
Q ss_pred CCHHHHHHHhcCCC-Ccccccccceeeee
Q psy16924 2 GDRPAAERACKDPN-PIIDGRKANVNLAI 29 (94)
Q Consensus 2 ~D~eaA~rAc~dpn-PiIDGRrANcNLA~ 29 (94)
.+.++|++|++.-| -.|+||+..|++|-
T Consensus 120 ~~~~~a~~Ai~~lng~~~~Gr~l~V~~a~ 148 (229)
T 3q2s_C 120 GSEASSKKLMDLLPKRELHGQNPVVTPVN 148 (229)
T ss_dssp SCTTHHHHHHTTSTTSCBTTBCCEEEECC
T ss_pred CCHHHHHHHHHHcCCCeECCEEeEEEECC
Confidence 57889999999766 67999999999873
No 100
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=63.92 E-value=5.2 Score=24.34 Aligned_cols=28 Identities=11% Similarity=0.045 Sum_probs=22.5
Q ss_pred CCHHHHHHHhcCCCCcccccccceeeee
Q psy16924 2 GDRPAAERACKDPNPIIDGRKANVNLAI 29 (94)
Q Consensus 2 ~D~eaA~rAc~dpnPiIDGRrANcNLA~ 29 (94)
.+.++|++|++--.-.|+||...|..|.
T Consensus 63 ~~~~~a~~Al~~~~~~~~gr~i~V~~a~ 90 (107)
T 2lmi_A 63 ESEQDVQKALEKHRMYMGQRYVEVYEIN 90 (107)
T ss_dssp SSHHHHHHHHTTTTCCSSSSCCCCEECC
T ss_pred CCHHHHHHHHHhCcceeCCeEEEEEECC
Confidence 5789999999933366999999888874
No 101
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=63.91 E-value=1.7 Score=26.35 Aligned_cols=27 Identities=11% Similarity=0.183 Sum_probs=22.2
Q ss_pred CCHHHHHHHhcCCC-Ccccccccceeee
Q psy16924 2 GDRPAAERACKDPN-PIIDGRKANVNLA 28 (94)
Q Consensus 2 ~D~eaA~rAc~dpn-PiIDGRrANcNLA 28 (94)
.+.++|++|++.-| -.|+||+-.|.+|
T Consensus 65 ~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 92 (97)
T 2xnq_A 65 DNPQSVRDAIEXESQEMNFGKKLILEVS 92 (97)
T ss_dssp SSHHHHHHHHHHHTTSEETTEECEEEEC
T ss_pred CCHHHHHHHHHHcCCCEECCEEEEEEec
Confidence 57899999999554 4689999999886
No 102
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=63.86 E-value=3.1 Score=24.75 Aligned_cols=28 Identities=18% Similarity=0.166 Sum_probs=23.1
Q ss_pred CCHHHHHHHhcCC--CCcccccccceeeee
Q psy16924 2 GDRPAAERACKDP--NPIIDGRKANVNLAI 29 (94)
Q Consensus 2 ~D~eaA~rAc~dp--nPiIDGRrANcNLA~ 29 (94)
.+.++|++|++.- .-.|+||+-.|..|-
T Consensus 66 ~~~~~a~~A~~~l~~~~~~~g~~l~v~~a~ 95 (107)
T 2cph_A 66 ITKQDAKKAFNALCHSTHLYGRRLVLEWAD 95 (107)
T ss_dssp SSHHHHHHHHHHHHTCCBSSSCBCEEEECC
T ss_pred CCHHHHHHHHHHhccCCeECCCEEEEEeCC
Confidence 5789999999864 467999999999873
No 103
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=63.54 E-value=1.9 Score=26.71 Aligned_cols=27 Identities=26% Similarity=0.304 Sum_probs=21.8
Q ss_pred CCHHHHHHHhcCCC-Ccccccccceeee
Q psy16924 2 GDRPAAERACKDPN-PIIDGRKANVNLA 28 (94)
Q Consensus 2 ~D~eaA~rAc~dpn-PiIDGRrANcNLA 28 (94)
.+.++|++|++.-| -.|+||+-.|..|
T Consensus 76 ~~~~~A~~Ai~~l~g~~i~g~~l~V~~a 103 (108)
T 2jrs_A 76 SDSECAKKALEQLNGFELAGRPMKVGHV 103 (108)
T ss_dssp SCHHHHHHHHHHHTTCCSSSSCCEEECS
T ss_pred CCHHHHHHHHHHcCCCEECCEEEEEEEc
Confidence 57899999998544 4599999998876
No 104
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=63.51 E-value=4.2 Score=24.38 Aligned_cols=26 Identities=23% Similarity=0.239 Sum_probs=21.3
Q ss_pred CCHHHHHHHhcCCC-Ccccccccceeee
Q psy16924 2 GDRPAAERACKDPN-PIIDGRKANVNLA 28 (94)
Q Consensus 2 ~D~eaA~rAc~dpn-PiIDGRrANcNLA 28 (94)
.|.++|++|+ .-| -.|+||+-.|..|
T Consensus 69 ~~~~~a~~Ai-~l~g~~~~g~~l~V~~a 95 (100)
T 2j76_E 69 EDLDSLLSAL-SLNEESLGNRRIRVDVA 95 (100)
T ss_dssp CCHHHHHHHH-HTTTCCBTTBCCCCEEC
T ss_pred CCHHHHHHHH-hcCCCEECCeEEEEEec
Confidence 5789999999 444 5699999998887
No 105
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=63.39 E-value=1.9 Score=27.23 Aligned_cols=28 Identities=7% Similarity=0.019 Sum_probs=22.9
Q ss_pred CCCHHHHHHHhcCCC-Ccccccccceeee
Q psy16924 1 MGDRPAAERACKDPN-PIIDGRKANVNLA 28 (94)
Q Consensus 1 m~D~eaA~rAc~dpn-PiIDGRrANcNLA 28 (94)
+.|.++|++|++.-| -.++||+-.|..+
T Consensus 66 f~~~~~A~~Ai~~lnG~~f~GR~i~v~~~ 94 (105)
T 3v4m_A 66 FTSVFDCQKAMQGLTGRKFANRVVVTKYC 94 (105)
T ss_dssp ESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred ECCHHHHHHHHHHhCCCEeCCCEEEEEEe
Confidence 368899999998766 5689999888776
No 106
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=63.18 E-value=2.2 Score=25.23 Aligned_cols=27 Identities=26% Similarity=0.343 Sum_probs=21.7
Q ss_pred CCHHHHHHHhcCCC-Cccc--ccccceeee
Q psy16924 2 GDRPAAERACKDPN-PIID--GRKANVNLA 28 (94)
Q Consensus 2 ~D~eaA~rAc~dpn-PiID--GRrANcNLA 28 (94)
.+.++|++|++.-| -.|+ ||+-.|..|
T Consensus 61 ~~~~~A~~A~~~l~g~~~~~~g~~l~V~~a 90 (97)
T 1why_A 61 ESLDAAQAACAKMRGFPLGGPDRRLRVDFA 90 (97)
T ss_dssp SSHHHHHHHHHHHTTCBCSSSSCBCEEEEC
T ss_pred CCHHHHHHHHHHHCCCEeCCCCcEEEEEEC
Confidence 57899999998544 4588 999999887
No 107
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=62.88 E-value=2.1 Score=26.59 Aligned_cols=29 Identities=28% Similarity=0.340 Sum_probs=23.3
Q ss_pred CCHHHHHHHhcCCC-Ccccccccceeeeec
Q psy16924 2 GDRPAAERACKDPN-PIIDGRKANVNLAIL 30 (94)
Q Consensus 2 ~D~eaA~rAc~dpn-PiIDGRrANcNLA~L 30 (94)
.+.++|++|++.-| -.|+||+-.|.+|.-
T Consensus 84 ~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 113 (124)
T 2kt5_A 84 ERRADALKAMKQYKGVPLDGRPMDIQLVAS 113 (124)
T ss_dssp SSHHHHHHHHHHHTTEESSSCEEEEEEECC
T ss_pred CCHHHHHHHHHHcCCCEECCcEEEEEEeCC
Confidence 57889999998554 469999999999843
No 108
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=62.83 E-value=3.7 Score=24.84 Aligned_cols=29 Identities=31% Similarity=0.298 Sum_probs=23.1
Q ss_pred CCCHHHHHHHhcCCC-Ccccccccceeeee
Q psy16924 1 MGDRPAAERACKDPN-PIIDGRKANVNLAI 29 (94)
Q Consensus 1 m~D~eaA~rAc~dpn-PiIDGRrANcNLA~ 29 (94)
+.+.++|++|++.-| -.|+||+-.|.+|-
T Consensus 72 f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 101 (113)
T 2cpe_A 72 YEDPPTAKAAVEWFDGKDFQGSKLKVSLAR 101 (113)
T ss_dssp BSSHHHHHHHHHHHTTCEETTEECEEECSS
T ss_pred ECCHHHHHHHHHHcCCCccCCCEEEEEECC
Confidence 357899999998543 56999999998873
No 109
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=62.31 E-value=3.9 Score=24.47 Aligned_cols=28 Identities=29% Similarity=0.439 Sum_probs=22.7
Q ss_pred CCHHHHHHHhcCCC-------Ccccccccceeeee
Q psy16924 2 GDRPAAERACKDPN-------PIIDGRKANVNLAI 29 (94)
Q Consensus 2 ~D~eaA~rAc~dpn-------PiIDGRrANcNLA~ 29 (94)
.+.++|++|++.-| -.|+||+-.|..|.
T Consensus 65 ~~~~~A~~A~~~~~~~~~~~~~~~~g~~l~v~~a~ 99 (111)
T 1x4h_A 65 MTQEAAQKCLAAASLEAEGGGLKLDGRQLKVDLAV 99 (111)
T ss_dssp SSHHHHHHHHHHHCTTTTTCCEESSSCEEEEECCC
T ss_pred CCHHHHHHHHHHhccccccCCcEEcCEEEEEEECC
Confidence 57889999998543 56999999998874
No 110
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=66.31 E-value=1.6 Score=26.80 Aligned_cols=28 Identities=25% Similarity=0.278 Sum_probs=23.1
Q ss_pred CCHHHHHHHhcCCC-Ccccccccceeeee
Q psy16924 2 GDRPAAERACKDPN-PIIDGRKANVNLAI 29 (94)
Q Consensus 2 ~D~eaA~rAc~dpn-PiIDGRrANcNLA~ 29 (94)
.+.++|++|++.-| -.|+||+-.|..|.
T Consensus 65 ~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 93 (116)
T 2lcw_A 65 DDPPSAKAAIDWFDGKEFSGNPIKVSFAT 93 (116)
Confidence 57789999999765 55999999999874
No 111
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=62.23 E-value=2.8 Score=26.73 Aligned_cols=29 Identities=21% Similarity=0.286 Sum_probs=22.9
Q ss_pred CCCHHHHHHHhcCCC-Ccccccccceeeee
Q psy16924 1 MGDRPAAERACKDPN-PIIDGRKANVNLAI 29 (94)
Q Consensus 1 m~D~eaA~rAc~dpn-PiIDGRrANcNLA~ 29 (94)
+.+.++|++|++.-| -.|+||+-.|..|-
T Consensus 80 f~~~~~A~~Ai~~lng~~~~g~~l~V~~a~ 109 (121)
T 2bz2_A 80 YEKMESADQAVAELNGTQVESVQLKVNIAR 109 (121)
T ss_dssp CSSHHHHHHHHHHHTTCBCSSCBCEEEECC
T ss_pred ECCHHHHHHHHHHhCCCEECCeEEEEEEeC
Confidence 357899999997544 45899999999873
No 112
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=61.69 E-value=2 Score=27.68 Aligned_cols=27 Identities=26% Similarity=0.391 Sum_probs=22.3
Q ss_pred CCHHHHHHHhcCCC-Ccccccccceeee
Q psy16924 2 GDRPAAERACKDPN-PIIDGRKANVNLA 28 (94)
Q Consensus 2 ~D~eaA~rAc~dpn-PiIDGRrANcNLA 28 (94)
.+.++|++|++.-| -.|+||+-.|.+|
T Consensus 96 ~~~~~A~~Ai~~lng~~i~g~~l~V~~a 123 (129)
T 2kxn_B 96 ENVDDAKEAKERANGMELDGRRIRVDFS 123 (129)
T ss_dssp SCHHHHHHHHHHHTTCCSSSSCCEESCC
T ss_pred CCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 57899999998544 5599999999887
No 113
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=61.24 E-value=2.4 Score=25.44 Aligned_cols=28 Identities=21% Similarity=0.353 Sum_probs=22.9
Q ss_pred CCHHHHHHHhcCCC-Ccccccccceeeee
Q psy16924 2 GDRPAAERACKDPN-PIIDGRKANVNLAI 29 (94)
Q Consensus 2 ~D~eaA~rAc~dpn-PiIDGRrANcNLA~ 29 (94)
.|.++|++|++.-| -.|+||+-.|.+|-
T Consensus 53 ~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 81 (103)
T 2dgu_A 53 DERDGAVKAMEEMNGKDLEGENIEIVFAK 81 (103)
T ss_dssp SSHHHHHHHHHHHTTEEETTEEEEEEECC
T ss_pred CCHHHHHHHHHHHCCCccCCCEEEEEEcC
Confidence 57899999998533 56999999999984
No 114
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=61.07 E-value=7.1 Score=23.25 Aligned_cols=27 Identities=19% Similarity=0.159 Sum_probs=22.2
Q ss_pred CCHHHHHHHhcCCC-Ccccccccceeeee
Q psy16924 2 GDRPAAERACKDPN-PIIDGRKANVNLAI 29 (94)
Q Consensus 2 ~D~eaA~rAc~dpn-PiIDGRrANcNLA~ 29 (94)
.+.++|++|+ .-| -.|+||+-.|..|-
T Consensus 65 ~~~~~a~~A~-~l~g~~~~g~~l~V~~a~ 92 (104)
T 1wi8_A 65 EDLDSLLSAL-SLNEESLGNKRIRVDVAD 92 (104)
T ss_dssp SSHHHHHHHH-GGGTCEETTEECEEEECC
T ss_pred CCHHHHHHHH-hcCCCEeCCcEEEEEEcc
Confidence 5789999999 544 56999999999984
No 115
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=61.03 E-value=4.7 Score=26.91 Aligned_cols=29 Identities=14% Similarity=0.045 Sum_probs=23.2
Q ss_pred CCHHHHHHHhcCCCCcccccccceeeeec
Q psy16924 2 GDRPAAERACKDPNPIIDGRKANVNLAIL 30 (94)
Q Consensus 2 ~D~eaA~rAc~dpnPiIDGRrANcNLA~L 30 (94)
.+.|+|++|++--.-.|+||+..|.++.-
T Consensus 94 ~~~e~A~~Al~~~g~~l~gR~i~V~~a~~ 122 (139)
T 2hgn_A 94 ATHEEAVAAMSKDRANMQHRYIELFLNST 122 (139)
T ss_dssp SHHHHHHHHTTCCSCSSSSCCCCCEECCC
T ss_pred CCHHHHHHHHhhCCCEECCEEEEEEECCC
Confidence 57889999996545679999999988753
No 116
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=60.85 E-value=4.3 Score=25.40 Aligned_cols=28 Identities=14% Similarity=0.016 Sum_probs=22.7
Q ss_pred CCHHHHHHHhcCCCCcccccccceeeee
Q psy16924 2 GDRPAAERACKDPNPIIDGRKANVNLAI 29 (94)
Q Consensus 2 ~D~eaA~rAc~dpnPiIDGRrANcNLA~ 29 (94)
.+.++|++|++--.-.|+||+..|+.|.
T Consensus 69 ~~~~~a~~Al~~~g~~~~gr~i~V~~a~ 96 (118)
T 2db1_A 69 ESEDDVKLALKKDRESMGHRYIEVFKSH 96 (118)
T ss_dssp SSHHHHHHHGGGTTEEETTEEEEEEEEC
T ss_pred CCHHHHHHHHhcCCCeECCeEEEEEECC
Confidence 5789999999932356999999999874
No 117
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=60.64 E-value=2.8 Score=27.22 Aligned_cols=29 Identities=14% Similarity=0.027 Sum_probs=24.4
Q ss_pred CCCHHHHHHHhcCCC-Ccccccccceeeee
Q psy16924 1 MGDRPAAERACKDPN-PIIDGRKANVNLAI 29 (94)
Q Consensus 1 m~D~eaA~rAc~dpn-PiIDGRrANcNLA~ 29 (94)
+.|.++|.+|++.-| -.++||+-.|+.+.
T Consensus 62 f~~~e~A~~Ai~~lnG~~f~GR~i~v~~~~ 91 (114)
T 3s6e_A 62 CPSIAAAIAAVNALHGRWFAGKMITAAYVP 91 (114)
T ss_dssp CSSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred ECCHHHHHHHHHHhCCCEECCEEEEEEEEc
Confidence 468899999999766 56999999999874
No 118
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=59.44 E-value=4 Score=28.04 Aligned_cols=27 Identities=7% Similarity=0.082 Sum_probs=22.7
Q ss_pred CCHHHHHHHhcCCCCcccccccceeee
Q psy16924 2 GDRPAAERACKDPNPIIDGRKANVNLA 28 (94)
Q Consensus 2 ~D~eaA~rAc~dpnPiIDGRrANcNLA 28 (94)
.+.++|++|++..+..|+||+-.|..+
T Consensus 158 ~~~e~A~~A~~~~~~~~~Gr~l~V~~~ 184 (193)
T 2voo_A 158 DSIESAKKFVETPGQKYKETDLLILFK 184 (193)
T ss_dssp SSHHHHHHHHHCTTCEETTEECEEEET
T ss_pred CCHHHHHHHHHhCCCeECCEEEEEEEh
Confidence 578999999998788999999877643
No 119
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=59.12 E-value=2.9 Score=25.39 Aligned_cols=28 Identities=18% Similarity=-0.054 Sum_probs=22.4
Q ss_pred CCHHHHHHHhcCCC-Ccccccccceeeee
Q psy16924 2 GDRPAAERACKDPN-PIIDGRKANVNLAI 29 (94)
Q Consensus 2 ~D~eaA~rAc~dpn-PiIDGRrANcNLA~ 29 (94)
.+.++|++|++.-| -.|+||+-.|..|-
T Consensus 55 ~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 83 (115)
T 3lqv_A 55 EDIFDAKNAVDHLSGFNVSNRYLVVLYYN 83 (115)
T ss_dssp SSHHHHHHHHHHHTTCBSSSCBCEEEECC
T ss_pred CCHHHHHHHHHHcCCCEECCeEEEEEEec
Confidence 57889999998544 56899999998873
No 120
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=58.99 E-value=1.9 Score=25.63 Aligned_cols=30 Identities=27% Similarity=0.350 Sum_probs=23.3
Q ss_pred CCCHHHHHHHhcCCC-Ccccccccceeeeec
Q psy16924 1 MGDRPAAERACKDPN-PIIDGRKANVNLAIL 30 (94)
Q Consensus 1 m~D~eaA~rAc~dpn-PiIDGRrANcNLA~L 30 (94)
+.+.++|++|++.-| -.|+||+-.|..|--
T Consensus 44 f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~ 74 (101)
T 2hvz_A 44 FEDPRDAEDAVRGLDGKVICGSRVRVELSTG 74 (101)
T ss_dssp CSSHHHHHHHHHHHHHSCSSSCCCEEEESSS
T ss_pred ECCHHHHHHHHHHHCCCeECCcEEEEEEccC
Confidence 367899999998543 459999999988743
No 121
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=58.83 E-value=2.5 Score=27.56 Aligned_cols=29 Identities=17% Similarity=0.150 Sum_probs=23.7
Q ss_pred CCCHHHHHHHhcCCC-Ccccccccceeeee
Q psy16924 1 MGDRPAAERACKDPN-PIIDGRKANVNLAI 29 (94)
Q Consensus 1 m~D~eaA~rAc~dpn-PiIDGRrANcNLA~ 29 (94)
+.|.++|.+|++.-| -.++||+-.|+++.
T Consensus 78 F~~~e~A~~Ai~~LnGr~f~GR~i~v~~~~ 107 (118)
T 3ue2_A 78 FSIASETHKAIQALNGRWFAGRKVVAEVYD 107 (118)
T ss_dssp ESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred ECCHHHHHHHHHHHCCCEECCcEEEEEEcC
Confidence 368899999999766 67999999888763
No 122
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=58.58 E-value=4.7 Score=25.73 Aligned_cols=29 Identities=17% Similarity=0.184 Sum_probs=24.2
Q ss_pred CCHHHHHHHhcCCCCcccccccceeeeec
Q psy16924 2 GDRPAAERACKDPNPIIDGRKANVNLAIL 30 (94)
Q Consensus 2 ~D~eaA~rAc~dpnPiIDGRrANcNLA~L 30 (94)
.+.++|++|++..+-.|+||+-.+..+.-
T Consensus 63 ~~~~~A~~A~~~~~~~~~g~~l~v~~~~~ 91 (196)
T 1l3k_A 63 ATVEEVDAAMNARPHKVDGRVVEPKRAVS 91 (196)
T ss_dssp SSHHHHHHHHHTCSCEETTEECEEEECCC
T ss_pred CCHHHHHHHHhcCCCEECCEEeeeecccC
Confidence 57899999999855679999999988753
No 123
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=58.18 E-value=5.3 Score=26.51 Aligned_cols=28 Identities=18% Similarity=0.160 Sum_probs=23.3
Q ss_pred CCCHHHHHHHhcCCC-Ccccccccceeeee
Q psy16924 1 MGDRPAAERACKDPN-PIIDGRKANVNLAI 29 (94)
Q Consensus 1 m~D~eaA~rAc~dpn-PiIDGRrANcNLA~ 29 (94)
+.+.++|++|++ -| -.|+||+-.|+.|.
T Consensus 95 F~~~e~a~~Al~-~~g~~l~gr~i~V~~a~ 123 (136)
T 2hgl_A 95 LGSEDDVKMALK-KDRESMGHRYIEVFKSH 123 (136)
T ss_dssp CSSHHHHHHHHT-TTEEESSSSEEEEEECC
T ss_pred ECCHHHHHHHHh-cCCCEECCEEEEEEECC
Confidence 368899999999 55 56999999998873
No 124
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=58.11 E-value=2.4 Score=25.55 Aligned_cols=28 Identities=21% Similarity=0.158 Sum_probs=22.4
Q ss_pred CCHHHHHHHhcCCC-Ccccccccceeeee
Q psy16924 2 GDRPAAERACKDPN-PIIDGRKANVNLAI 29 (94)
Q Consensus 2 ~D~eaA~rAc~dpn-PiIDGRrANcNLA~ 29 (94)
.+.++|++|++.-| -.|+||+-.|..|.
T Consensus 76 ~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 104 (110)
T 1oo0_B 76 ETHKQALAAKEALNGAEIMGQTIQVDWCF 104 (110)
T ss_dssp SSHHHHHHHHHHHTTCEETTEECEEEESE
T ss_pred CCHHHHHHHHHHcCCCEECCcEEEEEEcc
Confidence 57889999998544 46899999998874
No 125
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=57.93 E-value=6.4 Score=23.32 Aligned_cols=32 Identities=13% Similarity=0.133 Sum_probs=25.2
Q ss_pred CCHHHHHHHhcCCC-CcccccccceeeeecCCc
Q psy16924 2 GDRPAAERACKDPN-PIIDGRKANVNLAILGAK 33 (94)
Q Consensus 2 ~D~eaA~rAc~dpn-PiIDGRrANcNLA~LGak 33 (94)
.+.++|++|++.-| -.|+||+-.|.+|.-..+
T Consensus 53 ~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~~ 85 (96)
T 2kvi_A 53 DNPQSVRDAIECESQEMNFGKKLILEVSSSNAR 85 (96)
T ss_dssp SCHHHHHHHHHHHTCSSCBTTTBCEEEEECCCC
T ss_pred CCHHHHHHHHHHcCCCeeCCcEEEEEEcCcCCC
Confidence 57899999998543 568999999999965433
No 126
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=57.51 E-value=1.3 Score=25.56 Aligned_cols=27 Identities=15% Similarity=0.113 Sum_probs=20.2
Q ss_pred CCHHHHHHHhcCCC-Ccccccccceeee
Q psy16924 2 GDRPAAERACKDPN-PIIDGRKANVNLA 28 (94)
Q Consensus 2 ~D~eaA~rAc~dpn-PiIDGRrANcNLA 28 (94)
.+.++|++|++.-| -.|+||+..|.-+
T Consensus 55 ~~~~~a~~A~~~l~g~~~~g~~~~~~~~ 82 (85)
T 1x4e_A 55 DSPSAAQKAVTALKASGVQAQMAKQSGP 82 (85)
T ss_dssp SCHHHHHHHHHHHHHHTCCEESCCSSCC
T ss_pred CCHHHHHHHHHHhcCCeEeeEEEeecCC
Confidence 57889999998554 4588888877544
No 127
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=56.19 E-value=3.8 Score=25.42 Aligned_cols=30 Identities=13% Similarity=0.080 Sum_probs=24.5
Q ss_pred CCHHHHHHHhcCCC-CcccccccceeeeecC
Q psy16924 2 GDRPAAERACKDPN-PIIDGRKANVNLAILG 31 (94)
Q Consensus 2 ~D~eaA~rAc~dpn-PiIDGRrANcNLA~LG 31 (94)
.+.++|++|++.-| -.|+||+-.|..|--.
T Consensus 54 ~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 84 (111)
T 1whx_A 54 LEPLEARKAFRHLAYSKFHHVPLYLEWAPIG 84 (111)
T ss_dssp SCHHHHHHHHHHHTTCBSSSSBCEEEEEETT
T ss_pred CCHHHHHHHHHHhCCCEECCeEEEEEECCCC
Confidence 57899999998665 4599999999998654
No 128
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=55.86 E-value=2.8 Score=28.26 Aligned_cols=27 Identities=33% Similarity=0.340 Sum_probs=22.9
Q ss_pred CCHHHHHHHhcCCC-Ccccccccceeee
Q psy16924 2 GDRPAAERACKDPN-PIIDGRKANVNLA 28 (94)
Q Consensus 2 ~D~eaA~rAc~dpn-PiIDGRrANcNLA 28 (94)
.+.|+|++|++.-| -.|+||+-.|..|
T Consensus 151 ~~~~~a~~Ai~~lng~~~~g~~i~V~~a 178 (213)
T 4f02_A 151 ETQEAAERAIEKMNGMLLNDRKVFVGRF 178 (213)
T ss_dssp SSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCHHHHHHHHHHhCCCEECCEEEEEEEc
Confidence 57899999998654 6799999999987
No 129
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=55.68 E-value=2.9 Score=24.46 Aligned_cols=27 Identities=11% Similarity=0.075 Sum_probs=21.4
Q ss_pred CCHHHHHHHhcCCC-Ccccccccceeee
Q psy16924 2 GDRPAAERACKDPN-PIIDGRKANVNLA 28 (94)
Q Consensus 2 ~D~eaA~rAc~dpn-PiIDGRrANcNLA 28 (94)
.+.++|++|++.-| -.|+||+-.|..|
T Consensus 59 ~~~~~A~~A~~~l~g~~~~g~~l~v~~a 86 (97)
T 1nu4_A 59 KEVSSATNALRSMQGFPFYDKPMRIQYA 86 (97)
T ss_dssp SSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 57899999998533 4589999888876
No 130
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=54.84 E-value=3.5 Score=25.52 Aligned_cols=29 Identities=10% Similarity=0.148 Sum_probs=22.8
Q ss_pred CCCHHHHHHHhcCCC-Ccccccccceeeee
Q psy16924 1 MGDRPAAERACKDPN-PIIDGRKANVNLAI 29 (94)
Q Consensus 1 m~D~eaA~rAc~dpn-PiIDGRrANcNLA~ 29 (94)
+.+.++|++|++.-| -.|+||+-.|..|-
T Consensus 72 f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 101 (108)
T 2jvo_A 72 FEEAESAAKAIEEVHGKSFANQPLEVVYSK 101 (108)
T ss_dssp CSSHHHHHHHHHHHTTCEETTEECEEESCS
T ss_pred ECCHHHHHHHHHHcCCCEECCeEEEEEEec
Confidence 467899999998543 45899999888874
No 131
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=54.11 E-value=6.7 Score=24.91 Aligned_cols=28 Identities=18% Similarity=0.035 Sum_probs=22.2
Q ss_pred CCCHHHHHHHhcCCCCcccccccceeee
Q psy16924 1 MGDRPAAERACKDPNPIIDGRKANVNLA 28 (94)
Q Consensus 1 m~D~eaA~rAc~dpnPiIDGRrANcNLA 28 (94)
+.+.++|++|++--.-.|+||.-.|..|
T Consensus 63 F~~~~~a~~Al~~~~~~~~gr~i~V~~a 90 (109)
T 2dnn_A 63 FLSPQDTFEALKRNRMLMIQRYVEVSPA 90 (109)
T ss_dssp CSSHHHHHHHHHTTTEEETTEEEEEEEC
T ss_pred ECCHHHHHHHHhcCCCeECCeEEEEEEC
Confidence 3678999999964446799999888776
No 132
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=53.93 E-value=3.6 Score=29.29 Aligned_cols=25 Identities=28% Similarity=0.165 Sum_probs=19.1
Q ss_pred HHHHhc--CCC-CcccccccceeeeecC
Q psy16924 7 AERACK--DPN-PIIDGRKANVNLAILG 31 (94)
Q Consensus 7 A~rAc~--dpn-PiIDGRrANcNLA~LG 31 (94)
|.+|++ .-| .-||||+-+|||=-=|
T Consensus 69 A~kAi~~~~lng~~I~Gr~irV~ln~~g 96 (136)
T 2j8a_A 69 AFSAVRKHESSGCFIMGFKFEVILNKHS 96 (136)
T ss_dssp HHHHHHHTTTTCEEETTEEEEEEECCTT
T ss_pred HHHHHHHhhhcCCeecCcEEEEEECccc
Confidence 888877 444 6699999999985444
No 133
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=53.79 E-value=7.5 Score=23.78 Aligned_cols=27 Identities=19% Similarity=0.283 Sum_probs=21.9
Q ss_pred CCHHHHHHHhcCCC-Ccccccccceeeee
Q psy16924 2 GDRPAAERACKDPN-PIIDGRKANVNLAI 29 (94)
Q Consensus 2 ~D~eaA~rAc~dpn-PiIDGRrANcNLA~ 29 (94)
.+.++|++|+ .-| -.|+||+-.|..|-
T Consensus 86 ~~~~~a~~A~-~l~g~~~~g~~l~V~~a~ 113 (124)
T 2jwn_A 86 AERNSVDAAV-AMDETVFRGRTIKVLPKR 113 (124)
T ss_dssp SSHHHHHHHH-TTTTCEETTEECEEEESS
T ss_pred CCHHHHHHHH-hcCCCeECCeEEEEEECC
Confidence 5789999999 455 56999999998873
No 134
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=53.23 E-value=6 Score=25.60 Aligned_cols=29 Identities=17% Similarity=0.154 Sum_probs=22.9
Q ss_pred CCHHHHHHHhcCCC-Ccccccccceeeeec
Q psy16924 2 GDRPAAERACKDPN-PIIDGRKANVNLAIL 30 (94)
Q Consensus 2 ~D~eaA~rAc~dpn-PiIDGRrANcNLA~L 30 (94)
.+.|+|++|++.-| -.|+||+-.|..|.-
T Consensus 175 ~~~~~A~~A~~~l~g~~~~g~~i~V~~a~~ 204 (216)
T 2qfj_A 175 EKAQSSQDAVSSMNLFDLGGQYLRVGKAVT 204 (216)
T ss_dssp SSHHHHHHHHHHHTTCBCSSSBCEEEECSS
T ss_pred cCHHHHHHHHHHccCCEeCCcEEEEEEecC
Confidence 57889999998433 469999999998754
No 135
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=51.87 E-value=4.8 Score=25.49 Aligned_cols=29 Identities=28% Similarity=0.367 Sum_probs=23.6
Q ss_pred CCCHHHHHHHhcCCC-Ccccccccceeeee
Q psy16924 1 MGDRPAAERACKDPN-PIIDGRKANVNLAI 29 (94)
Q Consensus 1 m~D~eaA~rAc~dpn-PiIDGRrANcNLA~ 29 (94)
+.+.++|.+|++.-| -.|+||+-.|..|-
T Consensus 99 f~~~~~A~~Ai~~lng~~~~g~~l~V~~a~ 128 (143)
T 3egn_A 99 LPNEKAAAKALKEANGYVLFGKPMVVQFAR 128 (143)
T ss_dssp CSSHHHHHHHHHHHTTBEETTEECEEEECC
T ss_pred eCCHHHHHHHHHHhCCCEeCCcEEEEEECC
Confidence 357899999999655 56999999999883
No 136
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=50.88 E-value=5 Score=24.37 Aligned_cols=28 Identities=7% Similarity=-0.018 Sum_probs=22.6
Q ss_pred CCHHHHHHHhcCCC-Ccccc-----cccceeeee
Q psy16924 2 GDRPAAERACKDPN-PIIDG-----RKANVNLAI 29 (94)
Q Consensus 2 ~D~eaA~rAc~dpn-PiIDG-----RrANcNLA~ 29 (94)
.+.++|++|++.-| -.|+| |+-.|+.|.
T Consensus 58 ~~~~~a~~Ai~~l~g~~~~g~~~~~~~i~V~~a~ 91 (108)
T 1x4c_A 58 VRKEDMTYAVRKLDNTKFRSHEGETAYIRVKVDG 91 (108)
T ss_dssp SSHHHHHHHHHHSSSEEEECTTSCEEEEEEEESS
T ss_pred CCHHHHHHHHHHHCcCCccCCcCcceEEEEEeCC
Confidence 57899999999766 45899 888888873
No 137
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=50.48 E-value=4.2 Score=25.67 Aligned_cols=28 Identities=21% Similarity=0.382 Sum_probs=22.5
Q ss_pred CCCHHHHHHHhcCCC-Ccccccccceeee
Q psy16924 1 MGDRPAAERACKDPN-PIIDGRKANVNLA 28 (94)
Q Consensus 1 m~D~eaA~rAc~dpn-PiIDGRrANcNLA 28 (94)
+.+.++|++|++.-| -.|+||+-.|..|
T Consensus 143 f~~~~~A~~A~~~l~g~~~~g~~i~v~~a 171 (175)
T 1fje_B 143 FKSEADAEKNLEEKQGAEIDGRSVSLYYT 171 (175)
T ss_dssp CSSHHHHHHHHHHHTEEEETTEEEEEEEC
T ss_pred ECCHHHHHHHHHHhCCCEECCeEEEEEec
Confidence 357899999999644 6699999888876
No 138
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=49.58 E-value=4.4 Score=24.05 Aligned_cols=27 Identities=15% Similarity=0.202 Sum_probs=21.8
Q ss_pred CCHHHHHHHhcCCCCcccccccceeeee
Q psy16924 2 GDRPAAERACKDPNPIIDGRKANVNLAI 29 (94)
Q Consensus 2 ~D~eaA~rAc~dpnPiIDGRrANcNLA~ 29 (94)
.+.++|++|++ -.-.|+||+-.|..|.
T Consensus 58 ~~~~~a~~Ai~-~~~~~~g~~l~v~~a~ 84 (102)
T 2xs2_A 58 YNDVDVQKIVE-SQINFHGKKLKLGPAI 84 (102)
T ss_dssp SSCCCHHHHTT-CCCEETTEECEEEEEE
T ss_pred CCHHHHHHHHh-CCCeECCEEEEEEECC
Confidence 46788999999 4456999999988875
No 139
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=49.23 E-value=9.2 Score=21.81 Aligned_cols=21 Identities=19% Similarity=0.215 Sum_probs=16.2
Q ss_pred CCHHHHHHHhcCCC-Ccccccc
Q psy16924 2 GDRPAAERACKDPN-PIIDGRK 22 (94)
Q Consensus 2 ~D~eaA~rAc~dpn-PiIDGRr 22 (94)
.|.++|++|++.-| -.|+||+
T Consensus 55 ~~~~~A~~Ai~~lng~~~~g~~ 76 (81)
T 2krb_A 55 ASPAHAVDAVKNADGYKLDKQH 76 (81)
T ss_dssp SSHHHHHHHHTTSSSCCCSSSS
T ss_pred CCHHHHHHHHHHhcCcccCCce
Confidence 57899999999765 4477763
No 140
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=48.37 E-value=5 Score=23.80 Aligned_cols=28 Identities=14% Similarity=0.005 Sum_probs=20.5
Q ss_pred CCHHHHHHHhcCCC-Ccccc---cccceeeee
Q psy16924 2 GDRPAAERACKDPN-PIIDG---RKANVNLAI 29 (94)
Q Consensus 2 ~D~eaA~rAc~dpn-PiIDG---RrANcNLA~ 29 (94)
.+.++|++|++.-| -.|+| |+-.|..|-
T Consensus 64 ~~~~~A~~Ai~~l~g~~~~gg~~~~l~V~~a~ 95 (105)
T 2dnh_A 64 SSHTEAQAAIHALHGSQTMPGASSSLVVKFAD 95 (105)
T ss_dssp SSHHHHHHHHHHHSSCCCCTTCSSCCEEEESC
T ss_pred CCHHHHHHHHHHHcCCccCCCCCccEEEEECc
Confidence 57899999998443 23565 998888874
No 141
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=47.11 E-value=5.4 Score=25.43 Aligned_cols=27 Identities=22% Similarity=0.330 Sum_probs=21.7
Q ss_pred CCHHHHHHHhcCCC-Ccccccccceeee
Q psy16924 2 GDRPAAERACKDPN-PIIDGRKANVNLA 28 (94)
Q Consensus 2 ~D~eaA~rAc~dpn-PiIDGRrANcNLA 28 (94)
.+.++|++|++.-| -.|+||+-.|..|
T Consensus 118 ~~~~~a~~A~~~l~g~~~~g~~l~v~~a 145 (150)
T 2i2y_A 118 EDPRDAADAVRELDGRTLCGCRVRVELS 145 (150)
T ss_dssp SSHHHHHHHHHHHSSSCSSSSCCEEEEC
T ss_pred CCHHHHHHHHHHcCCCEECCeEEEEEEc
Confidence 57889999998544 4589999999886
No 142
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=46.94 E-value=12 Score=23.75 Aligned_cols=30 Identities=33% Similarity=0.534 Sum_probs=24.2
Q ss_pred CCHHHHHHHhcCCC-CcccccccceeeeecC
Q psy16924 2 GDRPAAERACKDPN-PIIDGRKANVNLAILG 31 (94)
Q Consensus 2 ~D~eaA~rAc~dpn-PiIDGRrANcNLA~LG 31 (94)
.+.++|++|++.-| -.|+||+-.|..|--.
T Consensus 120 ~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 150 (158)
T 2kn4_A 120 HDKRDAEDAMDAMDGAVLDGRELRVQMARYG 150 (158)
T ss_dssp SBHHHHHHHHHHSTTEESSSSEEEEEEECCS
T ss_pred CCHHHHHHHHHHhCCCEECCeEEEEEECCCC
Confidence 57889999998654 4599999999998543
No 143
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=46.92 E-value=4.8 Score=25.38 Aligned_cols=26 Identities=31% Similarity=0.413 Sum_probs=19.1
Q ss_pred CCHHHHHHHhcCCC----C-cccccccceeee
Q psy16924 2 GDRPAAERACKDPN----P-IIDGRKANVNLA 28 (94)
Q Consensus 2 ~D~eaA~rAc~dpn----P-iIDGRrANcNLA 28 (94)
.|. +|++|++.-| | .|+||+-.|+.|
T Consensus 75 ~~~-~a~~Ai~~l~g~~~~~~~~gr~l~V~~a 105 (131)
T 2m2b_A 75 STI-EAAQLLQILQALHPPLTIDGKTINVEFA 105 (131)
T ss_dssp CHH-HHHHHHHHHTTCCCSCCGGGCCCCCEEC
T ss_pred CCH-HHHHHHHHhcCCCCCccCCCEEEEEEEC
Confidence 455 6777776433 2 699999999988
No 144
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=46.61 E-value=3.6 Score=25.01 Aligned_cols=27 Identities=11% Similarity=-0.060 Sum_probs=21.4
Q ss_pred CCHHHHHHHhcCCC-Ccccccccceeeee
Q psy16924 2 GDRPAAERACKDPN-PIIDGRKANVNLAI 29 (94)
Q Consensus 2 ~D~eaA~rAc~dpn-PiIDGRrANcNLA~ 29 (94)
.+.++|++|+ .-| -.|+||+-.|..|-
T Consensus 75 ~~~~~a~~A~-~l~g~~~~g~~l~V~~a~ 102 (114)
T 2cq4_A 75 CEIQSVPLAI-GLTGQRLLGVPIIVQASQ 102 (114)
T ss_dssp SCGGGHHHHH-HHTTEEETTEEEEEEEHH
T ss_pred CcHHHHHHHH-HcCCCEeCCeEEEEEecC
Confidence 5778899999 544 56999999998873
No 145
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=46.38 E-value=9.5 Score=23.74 Aligned_cols=27 Identities=11% Similarity=0.097 Sum_probs=21.1
Q ss_pred CCHHHHHHHhcCCCCcccccccceeee
Q psy16924 2 GDRPAAERACKDPNPIIDGRKANVNLA 28 (94)
Q Consensus 2 ~D~eaA~rAc~dpnPiIDGRrANcNLA 28 (94)
.+.|+|++|++-..-.|+||+..++.+
T Consensus 59 ~~~~~A~~A~~~~~~~~~g~~i~v~~~ 85 (172)
T 2g4b_A 59 RSVDETTQAMAFDGIIFQGQSLKIRRP 85 (172)
T ss_dssp SSHHHHHHHGGGTTCEETTEECEEECC
T ss_pred CCHHHHHHHHHhCCcEecCceeeecCC
Confidence 578999999943335699999988865
No 146
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=44.90 E-value=5.5 Score=26.58 Aligned_cols=29 Identities=24% Similarity=0.165 Sum_probs=23.7
Q ss_pred CCHHHHHHHhcCCC-Ccccccccceeeeec
Q psy16924 2 GDRPAAERACKDPN-PIIDGRKANVNLAIL 30 (94)
Q Consensus 2 ~D~eaA~rAc~dpn-PiIDGRrANcNLA~L 30 (94)
.|.|+|++|++.-| --+.||.-.++.|--
T Consensus 54 ~~~esA~~A~~~l~G~~l~gr~i~v~~A~~ 83 (96)
T 2diu_A 54 INQDSAERAQKRMENEDVFGNRIIVSFTPK 83 (96)
T ss_dssp SSHHHHHHHHHHHTTCCSSSSCCEEESSCC
T ss_pred CCHHHHHHHHHHhcCCccCCceEEEEecCC
Confidence 58899999998655 458999999998844
No 147
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=44.76 E-value=9.3 Score=25.90 Aligned_cols=29 Identities=28% Similarity=0.340 Sum_probs=23.6
Q ss_pred CCHHHHHHHhcCCC-Ccccccccceeeeec
Q psy16924 2 GDRPAAERACKDPN-PIIDGRKANVNLAIL 30 (94)
Q Consensus 2 ~D~eaA~rAc~dpn-PiIDGRrANcNLA~L 30 (94)
.+.++|++|++.-| -.|+||+-.|.+|.-
T Consensus 137 ~~~~~A~~Ai~~lng~~l~Gr~l~V~~a~~ 166 (177)
T 2f3j_A 137 ERRADALKAMKQYKGVPLDGRPMDIQLVAS 166 (177)
T ss_dssp SCHHHHHHHHHHSTTCBCSSSBCEEEEESS
T ss_pred CCHHHHHHHHHHhCCCEECCEEEEEEEecC
Confidence 57889999998554 469999999999854
No 148
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=44.53 E-value=5.4 Score=27.46 Aligned_cols=29 Identities=34% Similarity=0.386 Sum_probs=24.0
Q ss_pred CCCHHHHHHHhcCCC-Ccccccccceeeee
Q psy16924 1 MGDRPAAERACKDPN-PIIDGRKANVNLAI 29 (94)
Q Consensus 1 m~D~eaA~rAc~dpn-PiIDGRrANcNLA~ 29 (94)
|.|.++|++|++.-| -.++||+-.|+.|-
T Consensus 49 f~~~~~A~~Ai~~lng~~~~g~~l~v~~s~ 78 (205)
T 3tyt_A 49 MADGYAVDRAITHLNNNFMFGQKMNVCVSK 78 (205)
T ss_dssp ESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred ECCHHHHHHHHHHhCCCEECCceEEEEEcc
Confidence 468999999998665 55999999999874
No 149
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=43.21 E-value=20 Score=20.58 Aligned_cols=27 Identities=26% Similarity=0.479 Sum_probs=19.9
Q ss_pred CCCHHHHHHHhcCCCCcccccccceeee
Q psy16924 1 MGDRPAAERACKDPNPIIDGRKANVNLA 28 (94)
Q Consensus 1 m~D~eaA~rAc~dpnPiIDGRrANcNLA 28 (94)
+.|.++|++|++. .-.++|++-.+..|
T Consensus 49 f~~~~~a~~~~~~-~~~~~g~~l~v~~a 75 (88)
T 1wf0_A 49 FADDQIAQSLCGE-DLIIKGISVHISNA 75 (88)
T ss_dssp CSCHHHHHHTTTC-EEEETTEEEEEECC
T ss_pred ECCHHHHHHHhcC-CceeCCEEEEEEec
Confidence 3678899888776 44578888777766
No 150
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=42.61 E-value=6.1 Score=24.44 Aligned_cols=28 Identities=21% Similarity=0.204 Sum_probs=21.9
Q ss_pred CCHHHHHHHhcCCC-Ccccccccceeeee
Q psy16924 2 GDRPAAERACKDPN-PIIDGRKANVNLAI 29 (94)
Q Consensus 2 ~D~eaA~rAc~dpn-PiIDGRrANcNLA~ 29 (94)
.+.++|++|++.-| -.|+||+-.+..+.
T Consensus 53 ~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 81 (168)
T 1b7f_A 53 TSEMDSQRAIKVLNGITVRNKRLKVSYAR 81 (168)
T ss_dssp SSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCHHHHHHHHHhcCCCEeCCcEEEEEecC
Confidence 57899999997443 45899999888774
No 151
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=42.36 E-value=15 Score=21.70 Aligned_cols=28 Identities=21% Similarity=0.127 Sum_probs=21.0
Q ss_pred CCHHHHHHHhcCCC--Ccc--cccccceeeee
Q psy16924 2 GDRPAAERACKDPN--PII--DGRKANVNLAI 29 (94)
Q Consensus 2 ~D~eaA~rAc~dpn--PiI--DGRrANcNLA~ 29 (94)
.+.++|++|++.-| .++ +||+-.|..|-
T Consensus 63 ~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~a~ 94 (106)
T 2dgp_A 63 CERESALKAQSALHEQKTLPGMNRPIQVKPAD 94 (106)
T ss_dssp SSHHHHHHHHHHHTTTCCCTTCSSCCEEEECC
T ss_pred CCHHHHHHHHHHhcCCcccCCCCceEEEEECC
Confidence 57889999998544 344 77998888874
No 152
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=40.22 E-value=11 Score=25.84 Aligned_cols=29 Identities=10% Similarity=0.064 Sum_probs=23.6
Q ss_pred CCCHHHHHHHhcCCC-Ccccccccceeeee
Q psy16924 1 MGDRPAAERACKDPN-PIIDGRKANVNLAI 29 (94)
Q Consensus 1 m~D~eaA~rAc~dpn-PiIDGRrANcNLA~ 29 (94)
+.+.|+|++|++.-| -.|+||+-.|..|.
T Consensus 59 f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 88 (282)
T 3pgw_A 59 FKEVSSATNALRSMQGFPFYDKPMRIQYAK 88 (282)
T ss_pred ECCHHHHHHHHHHhcCCeeCCcEEEEEEec
Confidence 357899999998665 45899999999884
No 153
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=39.78 E-value=7.2 Score=23.87 Aligned_cols=29 Identities=21% Similarity=0.168 Sum_probs=22.7
Q ss_pred CCHHHHHHHhcCCC-Ccccccccceeeeec
Q psy16924 2 GDRPAAERACKDPN-PIIDGRKANVNLAIL 30 (94)
Q Consensus 2 ~D~eaA~rAc~dpn-PiIDGRrANcNLA~L 30 (94)
.+.++|++|++.-| -.|+||+..++.+.-
T Consensus 49 ~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~ 78 (166)
T 3md3_A 49 HQSHDANIALQTLNGKQIENNIVKINWAFQ 78 (166)
T ss_dssp SSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CCHHHHHHHHHHcCCCccCCCeeEEEEcCC
Confidence 57899999996444 458999999988743
No 154
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=38.87 E-value=7.6 Score=23.79 Aligned_cols=28 Identities=25% Similarity=0.189 Sum_probs=22.0
Q ss_pred CCHHHHHHHhcCCC-Ccccccccceeeee
Q psy16924 2 GDRPAAERACKDPN-PIIDGRKANVNLAI 29 (94)
Q Consensus 2 ~D~eaA~rAc~dpn-PiIDGRrANcNLA~ 29 (94)
.+.++|++|++.-| -.|+||+-.+..+.
T Consensus 52 ~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 80 (167)
T 1fxl_A 52 IDPKDAEKAINTLNGLRLQTKTIKVSYAR 80 (167)
T ss_dssp SSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCHHHHHHHHHHcCCCccCCceEEEEecC
Confidence 57899999998433 56899998888774
No 155
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=37.63 E-value=11 Score=24.40 Aligned_cols=30 Identities=23% Similarity=0.287 Sum_probs=23.1
Q ss_pred CCCHHHHHHHhcCCC-Ccccccccceeeeec
Q psy16924 1 MGDRPAAERACKDPN-PIIDGRKANVNLAIL 30 (94)
Q Consensus 1 m~D~eaA~rAc~dpn-PiIDGRrANcNLA~L 30 (94)
+.+.++|++|++.-| -.|+||+-.|..|--
T Consensus 48 f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~~ 78 (198)
T 1qm9_A 48 MADGNQAQLAMSHLNGHKLHGKPIRITLSKH 78 (198)
T ss_dssp CTTTHHHHHHHHHHTTCCCSSCCCEEEECCC
T ss_pred ECCHHHHHHHHHHhCCCeecCeEEEEEEecC
Confidence 367899999998444 458999999988753
No 156
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=36.68 E-value=10 Score=23.42 Aligned_cols=21 Identities=5% Similarity=0.036 Sum_probs=17.4
Q ss_pred CCHHHHHHHhcCCC-Ccccccc
Q psy16924 2 GDRPAAERACKDPN-PIIDGRK 22 (94)
Q Consensus 2 ~D~eaA~rAc~dpn-PiIDGRr 22 (94)
.+.++|++|++.-| -.|+||+
T Consensus 59 ~~~~~a~~Ai~~l~g~~~~gr~ 80 (115)
T 3beg_B 59 VRKEDMTYAVRKLDNTKFRSHE 80 (115)
T ss_dssp SSHHHHHHHHHHHTTCBCCCTT
T ss_pred CCHHHHHHHHHHhCCCEECCcE
Confidence 57899999999665 5699999
No 157
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=35.95 E-value=12 Score=23.75 Aligned_cols=27 Identities=11% Similarity=0.110 Sum_probs=21.4
Q ss_pred CCHHHHHHHhcCCC-Ccccccccceeeee
Q psy16924 2 GDRPAAERACKDPN-PIIDGRKANVNLAI 29 (94)
Q Consensus 2 ~D~eaA~rAc~dpn-PiIDGRrANcNLA~ 29 (94)
.+.|+|++|++ -| -.|+||+-.|+.+.
T Consensus 59 ~~~~~A~~Al~-l~g~~~~g~~i~v~~~~ 86 (198)
T 2yh0_A 59 RSVDETTQAMA-FDGIIFQGQSLKIRRPH 86 (198)
T ss_dssp SCSHHHHHHGG-GTTEEETTEEEEEECCC
T ss_pred CCHHHHHHHHH-hcCCEEcCceEEEeCCC
Confidence 57899999994 44 45999999988764
No 158
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=35.62 E-value=11 Score=25.42 Aligned_cols=28 Identities=18% Similarity=0.201 Sum_probs=22.5
Q ss_pred CCCHHHHHHHhcCCC-Ccccccccceeee
Q psy16924 1 MGDRPAAERACKDPN-PIIDGRKANVNLA 28 (94)
Q Consensus 1 m~D~eaA~rAc~dpn-PiIDGRrANcNLA 28 (94)
|.+.++|++|++.-| -.++||+-.|..+
T Consensus 182 f~~~~~a~~a~~~l~gr~~~gr~i~~~~~ 210 (222)
T 3dxb_A 182 FSIASETHKAIQALNGRWFAGRKVVAEVY 210 (222)
T ss_dssp ESSHHHHHHHHHHHTTCBSSSSBCEEEEC
T ss_pred ECCHHHHHHHHHHhcCceECCeEEEEEEc
Confidence 467899999999776 5689998877764
No 159
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=33.14 E-value=10 Score=24.73 Aligned_cols=30 Identities=20% Similarity=0.155 Sum_probs=23.7
Q ss_pred CCHHHHHHHhcCCC-CcccccccceeeeecC
Q psy16924 2 GDRPAAERACKDPN-PIIDGRKANVNLAILG 31 (94)
Q Consensus 2 ~D~eaA~rAc~dpn-PiIDGRrANcNLA~LG 31 (94)
.+.++|++|++.-| -.|+||+-.|.+|.-.
T Consensus 122 ~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 152 (165)
T 1rk8_A 122 ETHKQALAAKEALNGAEIMGQTIQVDWCFVK 152 (165)
T ss_dssp SSHHHHHHHHHHHTTCEETTEECEEEESEEC
T ss_pred CCHHHHHHHHHHhCCCEECCEEEEEEEecCC
Confidence 56788999998544 5599999999998653
No 160
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=32.70 E-value=12 Score=25.34 Aligned_cols=29 Identities=21% Similarity=0.248 Sum_probs=23.1
Q ss_pred CCHHHHHHHhcCCC-Ccccccccceeeeec
Q psy16924 2 GDRPAAERACKDPN-PIIDGRKANVNLAIL 30 (94)
Q Consensus 2 ~D~eaA~rAc~dpn-PiIDGRrANcNLA~L 30 (94)
.+.|+|++|++.-| -.|+||+-.|..|.-
T Consensus 80 ~~~~~A~~Ai~~l~g~~~~g~~l~v~~a~~ 109 (229)
T 2adc_A 80 ADGNQAQLAMSHLNGHKLHGKPIRITLSKH 109 (229)
T ss_dssp SCHHHHHHHHHHHTTCBCSSSBCEEECCSC
T ss_pred CCHHHHHHHHHHhCCCeECCeEEEEEEecC
Confidence 57899999997444 468999999998853
No 161
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=32.26 E-value=17 Score=21.52 Aligned_cols=26 Identities=27% Similarity=0.483 Sum_probs=18.3
Q ss_pred CCHHHHHHHhcCCCCcccccccceeee
Q psy16924 2 GDRPAAERACKDPNPIIDGRKANVNLA 28 (94)
Q Consensus 2 ~D~eaA~rAc~dpnPiIDGRrANcNLA 28 (94)
.|.++|+++.+. .-.++||+..|..|
T Consensus 56 ~~~~~A~~~~~~-~~~~~g~~v~v~~a 81 (89)
T 3d2w_A 56 ADDKVAQSLCGE-DLIIKGISVHISNA 81 (89)
T ss_dssp SCHHHHHHHTTC-EEEETTEEEEEEEC
T ss_pred CCHHHHHHHcCC-CcccCCEEEEEEEc
Confidence 578888865544 33477998888876
No 162
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=31.18 E-value=15 Score=25.22 Aligned_cols=28 Identities=18% Similarity=0.242 Sum_probs=22.8
Q ss_pred CCCHHHHHHHhcCCC-Ccccccccceeee
Q psy16924 1 MGDRPAAERACKDPN-PIIDGRKANVNLA 28 (94)
Q Consensus 1 m~D~eaA~rAc~dpn-PiIDGRrANcNLA 28 (94)
+.+.++|.+|++.-| -.|+||+-.|..|
T Consensus 233 f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 261 (284)
T 3smz_A 233 YETAEMAEEAQQQADGLSLGGSHLRVSFC 261 (284)
T ss_dssp CSSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred eCCHHHHHHHHHHhCCCccCCeEEEEEEe
Confidence 367899999998554 5689999988887
No 163
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=31.03 E-value=26 Score=22.00 Aligned_cols=27 Identities=15% Similarity=0.112 Sum_probs=21.0
Q ss_pred CCCHHHHHHHhcCCCCcccccccceeee
Q psy16924 1 MGDRPAAERACKDPNPIIDGRKANVNLA 28 (94)
Q Consensus 1 m~D~eaA~rAc~dpnPiIDGRrANcNLA 28 (94)
+.|.++|++|++.-+- ++||.-.|+.|
T Consensus 61 F~~~~~A~~Ai~~~~~-~~g~~l~V~~a 87 (100)
T 2d9o_A 61 FATVKAAELAVQNEVG-LVDNPLKISWL 87 (100)
T ss_dssp ESCHHHHHHHHHTCCB-CSSSBCEEECS
T ss_pred ECCHHHHHHHHHhcCC-CCCCeEEEEEc
Confidence 3678999999998543 67888888775
No 164
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=30.07 E-value=14 Score=22.58 Aligned_cols=27 Identities=7% Similarity=-0.043 Sum_probs=19.9
Q ss_pred CCCHHHHHHHhcCCCCcccccccceeee
Q psy16924 1 MGDRPAAERACKDPNPIIDGRKANVNLA 28 (94)
Q Consensus 1 m~D~eaA~rAc~dpnPiIDGRrANcNLA 28 (94)
+.|.++|++|++.-+ -+||++--|+.+
T Consensus 59 f~~~~~a~~Ai~~~~-~~~G~~~~~~~~ 85 (114)
T 2dnl_A 59 FQEESSVQALIDACL-EEDGKLYLCVSS 85 (114)
T ss_dssp CSSHHHHHHHHHHSE-EETTEEEEEECC
T ss_pred ECCHHHHHHHHHhhh-hcCCcEEEeccC
Confidence 357889999988553 378888777654
No 165
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=29.45 E-value=23 Score=27.64 Aligned_cols=28 Identities=25% Similarity=0.340 Sum_probs=23.9
Q ss_pred CCHHHHHHHhcCCC-Ccccccccceeeee
Q psy16924 2 GDRPAAERACKDPN-PIIDGRKANVNLAI 29 (94)
Q Consensus 2 ~D~eaA~rAc~dpn-PiIDGRrANcNLA~ 29 (94)
.+.++|..|++.-| -.|+|++..|++|-
T Consensus 152 ~~~e~A~~Ai~~lng~~i~gr~i~V~~a~ 180 (437)
T 3pgw_S 152 EHERDMHSAYKHADGKKIDGRRVLVDVER 180 (437)
T ss_pred ccHHHHHHHHHHcCCCEECCEEEEEEEeC
Confidence 57889999998765 56999999999985
No 166
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=28.92 E-value=14 Score=24.34 Aligned_cols=31 Identities=19% Similarity=0.197 Sum_probs=21.0
Q ss_pred CCCHHHHHHHhcCCC-Cccccc--ccceeeeecCCccC
Q psy16924 1 MGDRPAAERACKDPN-PIIDGR--KANVNLAILGAKPR 35 (94)
Q Consensus 1 m~D~eaA~rAc~dpn-PiIDGR--rANcNLA~LGakPr 35 (94)
|.|.++|++|.+.-| --|+|+ +-.++.| ||+
T Consensus 69 f~~~~~A~~A~~~LnG~~i~g~~~~l~V~~A----k~~ 102 (124)
T 2e5i_A 69 FESVLCAQKAKAALNGADIYAGCCTLKIEYA----RPT 102 (124)
T ss_dssp ESSHHHHHHHHHHHTTCCCBTTBSEEEEECC----SCS
T ss_pred ECCHHHHHHHHHHhCCCEecCCCeEEEEEEe----cCC
Confidence 568899999998665 347773 4555554 665
No 167
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=26.15 E-value=25 Score=24.73 Aligned_cols=28 Identities=14% Similarity=0.121 Sum_probs=21.2
Q ss_pred CCCHHHHHHHhcCCC-Ccccc--cccceeee
Q psy16924 1 MGDRPAAERACKDPN-PIIDG--RKANVNLA 28 (94)
Q Consensus 1 m~D~eaA~rAc~dpn-PiIDG--RrANcNLA 28 (94)
+.|.++|++|.+.-| -.|+| |+-.++.|
T Consensus 91 F~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~A 121 (164)
T 1sjr_A 91 YADPVSAQHAKLSLDGQNIYNACCTLRIDFS 121 (164)
T ss_dssp ESCHHHHHHHHHHSTTBCSSSSCSCEEEEEC
T ss_pred ECCHHHHHHHHHHhCCCEecCCCcEEEEEEe
Confidence 468899999999766 33644 88888876
No 168
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=25.29 E-value=22 Score=24.64 Aligned_cols=30 Identities=23% Similarity=0.310 Sum_probs=23.6
Q ss_pred CCCHHHHHHHhcCCC-Ccccccccceeeeec
Q psy16924 1 MGDRPAAERACKDPN-PIIDGRKANVNLAIL 30 (94)
Q Consensus 1 m~D~eaA~rAc~dpn-PiIDGRrANcNLA~L 30 (94)
+.+.++|.+|++.-| -.|+||+-.|..+.=
T Consensus 65 f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~~ 95 (261)
T 3sde_A 65 LESRTLAEIAKAELDGTILKSRPLRIRFATH 95 (261)
T ss_dssp CSSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred ECCHHHHHHHHHHcCCcEECCceeEeeeccc
Confidence 367899999998544 569999999988753
No 169
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=24.88 E-value=29 Score=23.85 Aligned_cols=26 Identities=35% Similarity=0.534 Sum_probs=20.9
Q ss_pred CCHHHHHHHhcCCC-Ccccccccceeee
Q psy16924 2 GDRPAAERACKDPN-PIIDGRKANVNLA 28 (94)
Q Consensus 2 ~D~eaA~rAc~dpn-PiIDGRrANcNLA 28 (94)
.+.++|++|+ .-| -.|+||+-.|..|
T Consensus 262 ~~~~~A~~A~-~l~g~~~~g~~i~V~~a 288 (292)
T 2ghp_A 262 ENKDSAERAL-QMNRSLLGNREISVSLA 288 (292)
T ss_dssp SSHHHHHHHG-GGTTEEETTEEEEEEEC
T ss_pred CCHHHHHHHH-HhcCCEECCcEEEEEEe
Confidence 5789999999 555 4599999888776
No 170
>1hkq_A REPA, replication protein; DNA binding protein, winged-helix, PPS10 plasmid, replication initiator dimer.; 2.75A {Pseudomonas syringae PV} SCOP: a.4.5.10
Probab=24.70 E-value=34 Score=22.28 Aligned_cols=21 Identities=19% Similarity=0.325 Sum_probs=16.8
Q ss_pred ehccCceEEEeeccccCcccc
Q psy16924 67 YVHMGSILTFEFNPFLKPYPI 87 (94)
Q Consensus 67 y~~~G~~~~~~~np~l~~~~~ 87 (94)
|......++++|||-++||++
T Consensus 100 Y~~~~G~v~i~fs~~i~Pyl~ 120 (132)
T 1hkq_A 100 YREGQGCVELGFSPTIIPHLT 120 (132)
T ss_dssp EETTTTEEEEEECTTTTTTHH
T ss_pred EEcCceEEEEEECHHHHHHHH
Confidence 665445789999999999975
Done!