Your job contains 1 sequence.
>psy16924
MGDRPAAERACKDPNPIIDGRKANVNLAILGAKPRGTLPPGISHQRSLALGSNDFEYTGW
PSFLMIYVHMGSILTFEFNPFLKPYPISGIKLLV
The BLAST search returned 3 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy16924
(94 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
ZFIN|ZDB-GENE-060312-43 - symbol:rbm24b "RNA binding moti... 175 2.1e-13 1
UNIPROTKB|E1BZ17 - symbol:RBM24 "RNA-binding protein 24" ... 170 7.1e-13 1
UNIPROTKB|Q5ZMA3 - symbol:RBM24 "RNA-binding protein 24" ... 170 7.1e-13 1
UNIPROTKB|A6QPJ1 - symbol:RBM24 "Uncharacterized protein"... 170 7.1e-13 1
UNIPROTKB|E2RM01 - symbol:RBM24 "Uncharacterized protein"... 170 7.1e-13 1
UNIPROTKB|E9PAY4 - symbol:RBM24 "RNA-binding protein 24" ... 170 7.1e-13 1
UNIPROTKB|H0YA61 - symbol:RBM24 "RNA-binding protein 24" ... 170 7.1e-13 1
UNIPROTKB|Q9BX46 - symbol:RBM24 "RNA-binding protein 24" ... 170 7.1e-13 1
UNIPROTKB|F1RUJ2 - symbol:RBM24 "Uncharacterized protein"... 170 7.1e-13 1
UNIPROTKB|Q6GQD3 - symbol:rbm24-a "RNA-binding protein 24... 170 7.1e-13 1
UNIPROTKB|Q6P8A7 - symbol:rbm24 "RNA-binding protein 24" ... 170 7.1e-13 1
UNIPROTKB|Q9I8B3 - symbol:rbm24-b "RNA-binding protein 24... 170 7.1e-13 1
MGI|MGI:3610364 - symbol:Rbm24 "RNA binding motif protein... 170 7.1e-13 1
RGD|1584029 - symbol:Rbm24 "RNA binding motif protein 24"... 170 7.1e-13 1
ZFIN|ZDB-GENE-040628-1 - symbol:rbm24a "RNA binding motif... 168 1.2e-12 1
UNIPROTKB|A6NG75 - symbol:RBM38 "RNA-binding protein 38" ... 166 1.9e-12 1
UNIPROTKB|F6VZ39 - symbol:RBM38 "RNA-binding protein 38" ... 166 1.9e-12 1
UNIPROTKB|Q9H0Z9 - symbol:RBM38 "RNA-binding protein 38" ... 166 1.9e-12 1
UNIPROTKB|F1NKP3 - symbol:RBM38 "RNA-binding protein 38" ... 165 2.4e-12 1
UNIPROTKB|F1NT70 - symbol:RBM38 "RNA-binding protein 38" ... 165 2.4e-12 1
UNIPROTKB|Q5ZJX4 - symbol:RBM38 "RNA-binding protein 38" ... 165 2.4e-12 1
MGI|MGI:1889294 - symbol:Rbm38 "RNA binding motif protein... 163 3.9e-12 1
RGD|1308503 - symbol:Rbm38 "RNA binding motif protein 38"... 163 3.9e-12 1
ZFIN|ZDB-GENE-030131-5923 - symbol:rbm38 "RNA binding mot... 162 5.0e-12 1
WB|WBGene00006321 - symbol:sup-12 species:6239 "Caenorhab... 160 8.2e-12 1
UNIPROTKB|O45189 - symbol:sup-12 "Protein SUP-12, isoform... 160 8.2e-12 1
UNIPROTKB|E1BLB7 - symbol:RBM38 "Uncharacterized protein"... 159 1.0e-11 1
UNIPROTKB|A5GFN7 - symbol:RNPC1 "Uncharacterized protein"... 159 1.0e-11 1
UNIPROTKB|A5GFN8 - symbol:RNPC1 "Uncharacterized protein"... 159 1.0e-11 1
TAIR|locus:2011726 - symbol:AT1G76460 species:3702 "Arabi... 119 6.7e-07 1
TAIR|locus:2196521 - symbol:AT1G22330 species:3702 "Arabi... 113 3.2e-06 1
TAIR|locus:2044370 - symbol:AT2G46780 species:3702 "Arabi... 110 9.1e-06 1
TAIR|locus:2037370 - symbol:AT1G20880 species:3702 "Arabi... 106 1.7e-05 1
TAIR|locus:2164042 - symbol:AT5G53680 species:3702 "Arabi... 100 1.9e-05 1
TAIR|locus:2032120 - symbol:AT1G78260 species:3702 "Arabi... 103 4.0e-05 1
TAIR|locus:2006998 - symbol:AT1G33470 species:3702 "Arabi... 99 7.9e-05 1
TAIR|locus:2102435 - symbol:ARP1 "ABA-regulated RNA-bindi... 99 9.0e-05 1
TAIR|locus:4515103555 - symbol:AT5G11412 species:3702 "Ar... 94 0.00011 1
>ZFIN|ZDB-GENE-060312-43 [details] [associations]
symbol:rbm24b "RNA binding motif protein 24b"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0001947 "heart
looping" evidence=IMP] [GO:0072358 "cardiovascular system
development" evidence=IGI] [GO:0003228 "atrial cardiac muscle
tissue development" evidence=IMP] [GO:0003229 "ventricular cardiac
muscle tissue development" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-060312-43 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0001947 GO:GO:0003229
GeneTree:ENSGT00390000002308 GO:GO:0003228 EMBL:CT027645
IPI:IPI00898048 ProteinModelPortal:E9QCG4
Ensembl:ENSDART00000127556 Bgee:E9QCG4 Uniprot:E9QCG4
Length = 245
Score = 175 (66.7 bits), Expect = 2.1e-13, P = 2.1e-13
Identities = 36/43 (83%), Positives = 36/43 (83%)
Query: 1 MGDRPAAERACKDPNPIIDGRKANVNLAILGAKPRGTLPPGIS 43
M DR AAERACKDPNPIIDGRKANVNLA LGAKPR L PG S
Sbjct: 59 MADRSAAERACKDPNPIIDGRKANVNLAYLGAKPR-ILQPGFS 100
>UNIPROTKB|E1BZ17 [details] [associations]
symbol:RBM24 "RNA-binding protein 24" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003730
"mRNA 3'-UTR binding" evidence=IEA] [GO:0010830 "regulation of
myotube differentiation" evidence=IEA] [GO:0043488 "regulation of
mRNA stability" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003730 GO:GO:0043488 GO:GO:0010830
GeneTree:ENSGT00390000002308 EMBL:AADN02027548 EMBL:AADN02027547
IPI:IPI00580084 ProteinModelPortal:E1BZ17
Ensembl:ENSGALT00000020752 OMA:ILHRSCL Uniprot:E1BZ17
Length = 245
Score = 170 (64.9 bits), Expect = 7.1e-13, P = 7.1e-13
Identities = 34/43 (79%), Positives = 36/43 (83%)
Query: 1 MGDRPAAERACKDPNPIIDGRKANVNLAILGAKPRGTLPPGIS 43
M DR AAERACKDPNPIIDGRKANVNLA LGAKPR + PG +
Sbjct: 59 MADRAAAERACKDPNPIIDGRKANVNLAYLGAKPR-IMQPGFA 100
>UNIPROTKB|Q5ZMA3 [details] [associations]
symbol:RBM24 "RNA-binding protein 24" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0030154
"cell differentiation" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0043488
"regulation of mRNA stability" evidence=ISS] [GO:0010830
"regulation of myotube differentiation" evidence=ISS] [GO:0003730
"mRNA 3'-UTR binding" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0030154 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003730 GO:GO:0043488 eggNOG:COG0724
GO:GO:0010830 HSSP:Q9H0Z9 HOVERGEN:HBG108399 EMBL:AJ719481
IPI:IPI00971402 RefSeq:NP_001012881.1 UniGene:Gga.39322
ProteinModelPortal:Q5ZMA3 SMR:Q5ZMA3 STRING:Q5ZMA3 GeneID:420846
KEGG:gga:420846 CTD:221662 NextBio:20823702 Uniprot:Q5ZMA3
Length = 225
Score = 170 (64.9 bits), Expect = 7.1e-13, P = 7.1e-13
Identities = 34/43 (79%), Positives = 36/43 (83%)
Query: 1 MGDRPAAERACKDPNPIIDGRKANVNLAILGAKPRGTLPPGIS 43
M DR AAERACKDPNPIIDGRKANVNLA LGAKPR + PG +
Sbjct: 59 MADRAAAERACKDPNPIIDGRKANVNLAYLGAKPR-IMQPGFA 100
>UNIPROTKB|A6QPJ1 [details] [associations]
symbol:RBM24 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0043488 "regulation of mRNA stability" evidence=IEA]
[GO:0010830 "regulation of myotube differentiation" evidence=IEA]
[GO:0003730 "mRNA 3'-UTR binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003730 GO:GO:0043488
HOGENOM:HOG000276232 GO:GO:0010830 HOVERGEN:HBG108399 CTD:221662
GeneTree:ENSGT00390000002308 OMA:LQADRMQ eggNOG:NOG248750
EMBL:DAAA02055633 EMBL:BC149345 IPI:IPI00711385
RefSeq:NP_001098455.1 UniGene:Bt.111570 SMR:A6QPJ1
Ensembl:ENSBTAT00000038477 GeneID:524220 KEGG:bta:524220
NextBio:20873922 Uniprot:A6QPJ1
Length = 236
Score = 170 (64.9 bits), Expect = 7.1e-13, P = 7.1e-13
Identities = 34/43 (79%), Positives = 36/43 (83%)
Query: 1 MGDRPAAERACKDPNPIIDGRKANVNLAILGAKPRGTLPPGIS 43
M DR AAERACKDPNPIIDGRKANVNLA LGAKPR + PG +
Sbjct: 59 MADRAAAERACKDPNPIIDGRKANVNLAYLGAKPR-IMQPGFA 100
>UNIPROTKB|E2RM01 [details] [associations]
symbol:RBM24 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00390000002308 EMBL:AAEX03017572 EMBL:AAEX03017571
Ensembl:ENSCAFT00000015807 Uniprot:E2RM01
Length = 116
Score = 170 (64.9 bits), Expect = 7.1e-13, P = 7.1e-13
Identities = 34/43 (79%), Positives = 36/43 (83%)
Query: 1 MGDRPAAERACKDPNPIIDGRKANVNLAILGAKPRGTLPPGIS 43
M DR AAERACKDPNPIIDGRKANVNLA LGAKPR + PG +
Sbjct: 59 MADRAAAERACKDPNPIIDGRKANVNLAYLGAKPR-IMQPGFA 100
>UNIPROTKB|E9PAY4 [details] [associations]
symbol:RBM24 "RNA-binding protein 24" species:9606 "Homo
sapiens" [GO:0003730 "mRNA 3'-UTR binding" evidence=IEA]
[GO:0010830 "regulation of myotube differentiation" evidence=IEA]
[GO:0043488 "regulation of mRNA stability" evidence=IEA]
GO:GO:0003730 GO:GO:0043488 GO:GO:0010830 CTD:221662 EMBL:AL136305
RefSeq:NP_001137413.1 UniGene:Hs.741190 GeneID:221662
KEGG:hsa:221662 HGNC:HGNC:21539 GenomeRNAi:221662 NextBio:91409
IPI:IPI00921027 ProteinModelPortal:E9PAY4 SMR:E9PAY4
Ensembl:ENST00000425446 ArrayExpress:E9PAY4 Bgee:E9PAY4
Uniprot:E9PAY4
Length = 178
Score = 170 (64.9 bits), Expect = 7.1e-13, P = 7.1e-13
Identities = 34/43 (79%), Positives = 36/43 (83%)
Query: 1 MGDRPAAERACKDPNPIIDGRKANVNLAILGAKPRGTLPPGIS 43
M DR AAERACKDPNPIIDGRKANVNLA LGAKPR + PG +
Sbjct: 1 MADRAAAERACKDPNPIIDGRKANVNLAYLGAKPR-IMQPGFA 42
>UNIPROTKB|H0YA61 [details] [associations]
symbol:RBM24 "RNA-binding protein 24" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 PROSITE:PS50102 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AL136305 HGNC:HGNC:21539 Ensembl:ENST00000509686
Bgee:H0YA61 Uniprot:H0YA61
Length = 80
Score = 170 (64.9 bits), Expect = 7.1e-13, P = 7.1e-13
Identities = 34/43 (79%), Positives = 36/43 (83%)
Query: 1 MGDRPAAERACKDPNPIIDGRKANVNLAILGAKPRGTLPPGIS 43
M DR AAERACKDPNPIIDGRKANVNLA LGAKPR + PG +
Sbjct: 18 MADRAAAERACKDPNPIIDGRKANVNLAYLGAKPR-IMQPGFA 59
>UNIPROTKB|Q9BX46 [details] [associations]
symbol:RBM24 "RNA-binding protein 24" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0030154
"cell differentiation" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0043488
"regulation of mRNA stability" evidence=ISS] [GO:0010830
"regulation of myotube differentiation" evidence=ISS] [GO:0003730
"mRNA 3'-UTR binding" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0030154 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003730 GO:GO:0043488 eggNOG:COG0724
HOGENOM:HOG000276232 GO:GO:0010830 HSSP:Q9H0Z9 HOVERGEN:HBG108399
CTD:221662 EMBL:AK055391 EMBL:AK095016 EMBL:AY547318 EMBL:AL136305
EMBL:BC104810 EMBL:BC104808 IPI:IPI00411370 IPI:IPI00827745
RefSeq:NP_001137413.1 RefSeq:NP_001137414.1 RefSeq:NP_694565.1
UniGene:Hs.741190 ProteinModelPortal:Q9BX46 SMR:Q9BX46
IntAct:Q9BX46 MINT:MINT-2879164 STRING:Q9BX46 PhosphoSite:Q9BX46
DMDM:74761312 PRIDE:Q9BX46 Ensembl:ENST00000318204
Ensembl:ENST00000379052 GeneID:221662 KEGG:hsa:221662
UCSC:uc003nbz.4 UCSC:uc003nca.3 GeneCards:GC06P017281
HGNC:HGNC:21539 neXtProt:NX_Q9BX46 PharmGKB:PA134964569
InParanoid:Q9BX46 OMA:LQADRMQ OrthoDB:EOG4DV5NS PhylomeDB:Q9BX46
GenomeRNAi:221662 NextBio:91409 ArrayExpress:Q9BX46 Bgee:Q9BX46
CleanEx:HS_RBM24 Genevestigator:Q9BX46 Uniprot:Q9BX46
Length = 236
Score = 170 (64.9 bits), Expect = 7.1e-13, P = 7.1e-13
Identities = 34/43 (79%), Positives = 36/43 (83%)
Query: 1 MGDRPAAERACKDPNPIIDGRKANVNLAILGAKPRGTLPPGIS 43
M DR AAERACKDPNPIIDGRKANVNLA LGAKPR + PG +
Sbjct: 59 MADRAAAERACKDPNPIIDGRKANVNLAYLGAKPR-IMQPGFA 100
>UNIPROTKB|F1RUJ2 [details] [associations]
symbol:RBM24 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0043488 "regulation of mRNA stability" evidence=IEA]
[GO:0010830 "regulation of myotube differentiation" evidence=IEA]
[GO:0003730 "mRNA 3'-UTR binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003730 GO:GO:0043488
GO:GO:0010830 GeneTree:ENSGT00390000002308 OMA:LQADRMQ
EMBL:CU466948 Ensembl:ENSSSCT00000001161 Uniprot:F1RUJ2
Length = 254
Score = 170 (64.9 bits), Expect = 7.1e-13, P = 7.1e-13
Identities = 34/43 (79%), Positives = 36/43 (83%)
Query: 1 MGDRPAAERACKDPNPIIDGRKANVNLAILGAKPRGTLPPGIS 43
M DR AAERACKDPNPIIDGRKANVNLA LGAKPR + PG +
Sbjct: 77 MADRAAAERACKDPNPIIDGRKANVNLAYLGAKPR-IMQPGFA 118
>UNIPROTKB|Q6GQD3 [details] [associations]
symbol:rbm24-a "RNA-binding protein 24-A" species:8355
"Xenopus laevis" [GO:0003730 "mRNA 3'-UTR binding" evidence=ISS]
[GO:0010830 "regulation of myotube differentiation" evidence=IMP]
[GO:0043488 "regulation of mRNA stability" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0030154
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003730 GO:GO:0043488
GO:GO:0010830 EMBL:AF223427 EMBL:BC072812 RefSeq:NP_001080995.1
UniGene:Xl.12316 HSSP:Q9H0Z9 ProteinModelPortal:Q6GQD3 SMR:Q6GQD3
GeneID:394318 KEGG:xla:394318 CTD:394318 Xenbase:XB-GENE-866276
HOVERGEN:HBG108399 Uniprot:Q6GQD3
Length = 225
Score = 170 (64.9 bits), Expect = 7.1e-13, P = 7.1e-13
Identities = 34/43 (79%), Positives = 36/43 (83%)
Query: 1 MGDRPAAERACKDPNPIIDGRKANVNLAILGAKPRGTLPPGIS 43
M DR AAERACKDPNPIIDGRKANVNLA LGAKPR + PG +
Sbjct: 59 MADRAAAERACKDPNPIIDGRKANVNLAYLGAKPR-IMQPGFA 100
>UNIPROTKB|Q6P8A7 [details] [associations]
symbol:rbm24 "RNA-binding protein 24" species:8364 "Xenopus
(Silurana) tropicalis" [GO:0003730 "mRNA 3'-UTR binding"
evidence=ISS] [GO:0010830 "regulation of myotube differentiation"
evidence=ISS] [GO:0043488 "regulation of mRNA stability"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0005737
GO:GO:0030154 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003730
GO:GO:0043488 HOGENOM:HOG000276232 GO:GO:0010830 HSSP:Q9H0Z9
HOVERGEN:HBG108399 CTD:221662 OrthoDB:EOG4DV5NS EMBL:BC061322
RefSeq:NP_989016.1 UniGene:Str.6492 ProteinModelPortal:Q6P8A7
SMR:Q6P8A7 STRING:Q6P8A7 GeneID:394612 KEGG:xtr:394612
Xenbase:XB-GENE-493647 eggNOG:NOG248750 InParanoid:Q6P8A7
Bgee:Q6P8A7 Uniprot:Q6P8A7
Length = 226
Score = 170 (64.9 bits), Expect = 7.1e-13, P = 7.1e-13
Identities = 34/43 (79%), Positives = 36/43 (83%)
Query: 1 MGDRPAAERACKDPNPIIDGRKANVNLAILGAKPRGTLPPGIS 43
M DR AAERACKDPNPIIDGRKANVNLA LGAKPR + PG +
Sbjct: 59 MADRAAAERACKDPNPIIDGRKANVNLAYLGAKPR-IMQPGFA 100
>UNIPROTKB|Q9I8B3 [details] [associations]
symbol:rbm24-b "RNA-binding protein 24-B" species:8355
"Xenopus laevis" [GO:0003730 "mRNA 3'-UTR binding" evidence=ISS]
[GO:0010830 "regulation of myotube differentiation" evidence=ISS]
[GO:0043488 "regulation of mRNA stability" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0030154
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003730 GO:GO:0043488
GO:GO:0010830 HSSP:Q9H0Z9 HOVERGEN:HBG108399 EMBL:AJ271404
EMBL:BC044956 RefSeq:NP_001079578.1 UniGene:Xl.467
ProteinModelPortal:Q9I8B3 SMR:Q9I8B3 GeneID:379265 KEGG:xla:379265
CTD:379265 Xenbase:XB-GENE-6256347 Uniprot:Q9I8B3
Length = 224
Score = 170 (64.9 bits), Expect = 7.1e-13, P = 7.1e-13
Identities = 34/43 (79%), Positives = 36/43 (83%)
Query: 1 MGDRPAAERACKDPNPIIDGRKANVNLAILGAKPRGTLPPGIS 43
M DR AAERACKDPNPIIDGRKANVNLA LGAKPR + PG +
Sbjct: 59 MADRAAAERACKDPNPIIDGRKANVNLAYLGAKPR-IMQPGFA 100
>MGI|MGI:3610364 [details] [associations]
symbol:Rbm24 "RNA binding motif protein 24" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0003730 "mRNA 3'-UTR binding"
evidence=IDA] [GO:0005575 "cellular_component" evidence=ND]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0010830 "regulation of myotube differentiation"
evidence=IMP] [GO:0030154 "cell differentiation" evidence=IEA]
[GO:0043488 "regulation of mRNA stability" evidence=IMP]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:3610364 GO:GO:0005634 GO:GO:0005737
GO:GO:0030154 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003730
GO:GO:0043488 HOGENOM:HOG000276232 GO:GO:0010830 CTD:221662
GeneTree:ENSGT00390000002308 OMA:LQADRMQ OrthoDB:EOG4DV5NS
EMBL:AC124411 IPI:IPI00380986 RefSeq:NP_001074894.1
UniGene:Mm.38269 ProteinModelPortal:D3Z4I3 SMR:D3Z4I3
Ensembl:ENSMUST00000037923 GeneID:666794 KEGG:mmu:666794
UCSC:uc007qhe.1 NextBio:430851 Bgee:D3Z4I3 Uniprot:D3Z4I3
Length = 236
Score = 170 (64.9 bits), Expect = 7.1e-13, P = 7.1e-13
Identities = 34/43 (79%), Positives = 36/43 (83%)
Query: 1 MGDRPAAERACKDPNPIIDGRKANVNLAILGAKPRGTLPPGIS 43
M DR AAERACKDPNPIIDGRKANVNLA LGAKPR + PG +
Sbjct: 59 MADRAAAERACKDPNPIIDGRKANVNLAYLGAKPR-IMQPGFA 100
>RGD|1584029 [details] [associations]
symbol:Rbm24 "RNA binding motif protein 24" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003730 "mRNA 3'-UTR binding" evidence=IEA;ISO] [GO:0010830
"regulation of myotube differentiation" evidence=IEA;ISO]
[GO:0043488 "regulation of mRNA stability" evidence=IEA;ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1584029 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003730 GO:GO:0043488 GO:GO:0010830 CTD:221662
OrthoDB:EOG4DV5NS IPI:IPI00214952 RefSeq:NP_001178029.1
UniGene:Rn.199020 ProteinModelPortal:D3ZLP6
Ensembl:ENSRNOT00000022768 GeneID:690139 KEGG:rno:690139
NextBio:740266 Uniprot:D3ZLP6
Length = 236
Score = 170 (64.9 bits), Expect = 7.1e-13, P = 7.1e-13
Identities = 34/43 (79%), Positives = 36/43 (83%)
Query: 1 MGDRPAAERACKDPNPIIDGRKANVNLAILGAKPRGTLPPGIS 43
M DR AAERACKDPNPIIDGRKANVNLA LGAKPR + PG +
Sbjct: 59 MADRAAAERACKDPNPIIDGRKANVNLAYLGAKPR-IMQPGFA 100
>ZFIN|ZDB-GENE-040628-1 [details] [associations]
symbol:rbm24a "RNA binding motif protein 24a"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003730 "mRNA 3'-UTR binding" evidence=ISS] [GO:0043488
"regulation of mRNA stability" evidence=ISS] [GO:0010830
"regulation of myotube differentiation" evidence=ISS] [GO:0003228
"atrial cardiac muscle tissue development" evidence=IMP]
[GO:0072358 "cardiovascular system development" evidence=IGI]
[GO:0001947 "heart looping" evidence=IMP] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0030154 "cell
differentiation" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-040628-1 GO:GO:0005634
GO:GO:0005737 GO:GO:0030154 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003730 GO:GO:0001947 GO:GO:0043488 eggNOG:COG0724
HOGENOM:HOG000276232 GO:GO:0010830 HSSP:Q9H0Z9 HOVERGEN:HBG108399
EMBL:AB080735 IPI:IPI00506301 RefSeq:NP_998030.1 UniGene:Dr.159425
ProteinModelPortal:Q76LC6 SMR:Q76LC6 STRING:Q76LC6
Ensembl:ENSDART00000110862 GeneID:405801 KEGG:dre:405801 CTD:405801
GeneTree:ENSGT00390000002308 OrthoDB:EOG4KWJVF NextBio:20817766
ArrayExpress:Q76LC6 Bgee:Q76LC6 GO:GO:0003228 Uniprot:Q76LC6
Length = 230
Score = 168 (64.2 bits), Expect = 1.2e-12, P = 1.2e-12
Identities = 33/43 (76%), Positives = 36/43 (83%)
Query: 1 MGDRPAAERACKDPNPIIDGRKANVNLAILGAKPRGTLPPGIS 43
M DR AA+RACKDPNPIIDGRKANVNLA LGAKPR + PG +
Sbjct: 59 MADRSAADRACKDPNPIIDGRKANVNLAYLGAKPR-VMQPGFT 100
>UNIPROTKB|A6NG75 [details] [associations]
symbol:RBM38 "RNA-binding protein 38" species:9606 "Homo
sapiens" [GO:0003729 "mRNA binding" evidence=IEA] [GO:0010830
"regulation of myotube differentiation" evidence=IEA] GO:GO:0003729
eggNOG:COG0724 HOGENOM:HOG000276232 GO:GO:0010830 EMBL:AL109955
HOVERGEN:HBG108399 OrthoDB:EOG4DV5NS UniGene:Hs.236361
HGNC:HGNC:15818 IPI:IPI00640966 SMR:A6NG75 STRING:A6NG75
Ensembl:ENST00000371219 Uniprot:A6NG75
Length = 158
Score = 166 (63.5 bits), Expect = 1.9e-12, P = 1.9e-12
Identities = 34/43 (79%), Positives = 36/43 (83%)
Query: 1 MGDRPAAERACKDPNPIIDGRKANVNLAILGAKPRGTLPPGIS 43
M DR AAERACKDPNPIIDGRKANVNLA LGAKPR +L G +
Sbjct: 1 MADRAAAERACKDPNPIIDGRKANVNLAYLGAKPR-SLQTGFA 42
>UNIPROTKB|F6VZ39 [details] [associations]
symbol:RBM38 "RNA-binding protein 38" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL109955
HGNC:HGNC:15818 IPI:IPI00927190 ProteinModelPortal:F6VZ39
SMR:F6VZ39 PRIDE:F6VZ39 Ensembl:ENST00000344785 ArrayExpress:F6VZ39
Bgee:F6VZ39 Uniprot:F6VZ39
Length = 123
Score = 166 (63.5 bits), Expect = 1.9e-12, P = 1.9e-12
Identities = 34/43 (79%), Positives = 36/43 (83%)
Query: 1 MGDRPAAERACKDPNPIIDGRKANVNLAILGAKPRGTLPPGIS 43
M DR AAERACKDPNPIIDGRKANVNLA LGAKPR +L G +
Sbjct: 59 MADRAAAERACKDPNPIIDGRKANVNLAYLGAKPR-SLQTGFA 100
>UNIPROTKB|Q9H0Z9 [details] [associations]
symbol:RBM38 "RNA-binding protein 38" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0007049 "cell cycle"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0030154
"cell differentiation" evidence=IEA] [GO:0003729 "mRNA binding"
evidence=IEA;IDA] [GO:0010830 "regulation of myotube
differentiation" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA;IDA] [GO:0005829 "cytosol" evidence=IEA;IDA]
[GO:0043484 "regulation of RNA splicing" evidence=IDA] [GO:0003730
"mRNA 3'-UTR binding" evidence=IDA] [GO:0006977 "DNA damage
response, signal transduction by p53 class mediator resulting in
cell cycle arrest" evidence=IDA] [GO:0006978 "DNA damage response,
signal transduction by p53 class mediator resulting in
transcription of p21 class mediator" evidence=IDA] [GO:0007050
"cell cycle arrest" evidence=IDA] [GO:0008285 "negative regulation
of cell proliferation" evidence=IDA] [GO:0070935 "3'-UTR-mediated
mRNA stabilization" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005829 GO:GO:0005634 EMBL:CH471077 GO:GO:0008285
GO:GO:0030154 GO:GO:0006977 GO:GO:0008380 GO:GO:0000166
GO:GO:0003729 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0007050
GO:GO:0007049 GO:GO:0003730 GO:GO:0043484 GO:GO:0006978
eggNOG:COG0724 GO:GO:0070935 GO:GO:0010830 EMBL:AL109955
HOVERGEN:HBG108399 EMBL:AF432218 EMBL:X75314 EMBL:X75315
EMBL:BC018711 IPI:IPI00306057 IPI:IPI00374855 RefSeq:NP_059965.2
RefSeq:NP_906270.1 UniGene:Hs.236361 PDB:2CQD PDBsum:2CQD
ProteinModelPortal:Q9H0Z9 SMR:Q9H0Z9 IntAct:Q9H0Z9 STRING:Q9H0Z9
PhosphoSite:Q9H0Z9 DMDM:215273895 PaxDb:Q9H0Z9 DNASU:55544
Ensembl:ENST00000356208 Ensembl:ENST00000440234 GeneID:55544
KEGG:hsa:55544 UCSC:uc010zzj.2 CTD:55544 GeneCards:GC20P055966
H-InvDB:HIX0015939 HGNC:HGNC:15818 HPA:CAB017036 MIM:612428
neXtProt:NX_Q9H0Z9 PharmGKB:PA34449 InParanoid:Q9H0Z9 OMA:VGYGYPA
EvolutionaryTrace:Q9H0Z9 GenomeRNAi:55544 NextBio:59995
ArrayExpress:Q9H0Z9 Bgee:Q9H0Z9 CleanEx:HS_RBM38
Genevestigator:Q9H0Z9 GermOnline:ENSG00000132819 Uniprot:Q9H0Z9
Length = 239
Score = 166 (63.5 bits), Expect = 1.9e-12, P = 1.9e-12
Identities = 34/43 (79%), Positives = 36/43 (83%)
Query: 1 MGDRPAAERACKDPNPIIDGRKANVNLAILGAKPRGTLPPGIS 43
M DR AAERACKDPNPIIDGRKANVNLA LGAKPR +L G +
Sbjct: 82 MADRAAAERACKDPNPIIDGRKANVNLAYLGAKPR-SLQTGFA 123
>UNIPROTKB|F1NKP3 [details] [associations]
symbol:RBM38 "RNA-binding protein 38" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR012677 GO:GO:0008285 GO:GO:0006977 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0007050 GO:GO:0003730 GO:GO:0043484
GO:GO:0006978 GO:GO:0070935 GO:GO:0010830
GeneTree:ENSGT00390000002308 OMA:VGYGYPA EMBL:AADN02018985
IPI:IPI00590634 Ensembl:ENSGALT00000012361 ArrayExpress:F1NKP3
Uniprot:F1NKP3
Length = 172
Score = 165 (63.1 bits), Expect = 2.4e-12, P = 2.4e-12
Identities = 32/35 (91%), Positives = 32/35 (91%)
Query: 1 MGDRPAAERACKDPNPIIDGRKANVNLAILGAKPR 35
M DR AAERACKDPNPIIDGRKANVNLA LGAKPR
Sbjct: 16 MADRAAAERACKDPNPIIDGRKANVNLAYLGAKPR 50
>UNIPROTKB|F1NT70 [details] [associations]
symbol:RBM38 "RNA-binding protein 38" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003730
"mRNA 3'-UTR binding" evidence=IEA] [GO:0006977 "DNA damage
response, signal transduction by p53 class mediator resulting in
cell cycle arrest" evidence=IEA] [GO:0006978 "DNA damage response,
signal transduction by p53 class mediator resulting in
transcription of p21 class mediator" evidence=IEA] [GO:0007050
"cell cycle arrest" evidence=IEA] [GO:0008285 "negative regulation
of cell proliferation" evidence=IEA] [GO:0010830 "regulation of
myotube differentiation" evidence=IEA] [GO:0043484 "regulation of
RNA splicing" evidence=IEA] [GO:0070935 "3'-UTR-mediated mRNA
stabilization" evidence=IEA] InterPro:IPR012677 GO:GO:0008285
GO:GO:0006977 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0007050
GO:GO:0003730 GO:GO:0043484 GO:GO:0006978 GO:GO:0070935
GO:GO:0010830 GeneTree:ENSGT00390000002308 OMA:VGYGYPA
EMBL:AADN02018985 IPI:IPI01017346 Ensembl:ENSGALT00000038979
ArrayExpress:F1NT70 Uniprot:F1NT70
Length = 171
Score = 165 (63.1 bits), Expect = 2.4e-12, P = 2.4e-12
Identities = 32/35 (91%), Positives = 32/35 (91%)
Query: 1 MGDRPAAERACKDPNPIIDGRKANVNLAILGAKPR 35
M DR AAERACKDPNPIIDGRKANVNLA LGAKPR
Sbjct: 15 MADRAAAERACKDPNPIIDGRKANVNLAYLGAKPR 49
>UNIPROTKB|Q5ZJX4 [details] [associations]
symbol:RBM38 "RNA-binding protein 38" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0030154
"cell differentiation" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005829 GO:GO:0005634 GO:GO:0030154
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 HOGENOM:HOG000276232 HSSP:Q9H0Z9 HOVERGEN:HBG108399
OrthoDB:EOG4DV5NS eggNOG:NOG248750 EMBL:AJ720310 IPI:IPI00586902
UniGene:Gga.5690 ProteinModelPortal:Q5ZJX4 SMR:Q5ZJX4
InParanoid:Q5ZJX4 Uniprot:Q5ZJX4
Length = 215
Score = 165 (63.1 bits), Expect = 2.4e-12, P = 2.4e-12
Identities = 32/35 (91%), Positives = 32/35 (91%)
Query: 1 MGDRPAAERACKDPNPIIDGRKANVNLAILGAKPR 35
M DR AAERACKDPNPIIDGRKANVNLA LGAKPR
Sbjct: 59 MADRAAAERACKDPNPIIDGRKANVNLAYLGAKPR 93
>MGI|MGI:1889294 [details] [associations]
symbol:Rbm38 "RNA binding motif protein 38" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0003729 "mRNA binding" evidence=ISO;IMP]
[GO:0003730 "mRNA 3'-UTR binding" evidence=ISO] [GO:0005634
"nucleus" evidence=ISO] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005829 "cytosol" evidence=ISO] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0006977 "DNA damage response, signal transduction
by p53 class mediator resulting in cell cycle arrest" evidence=ISO]
[GO:0006978 "DNA damage response, signal transduction by p53 class
mediator resulting in transcription of p21 class mediator"
evidence=ISO] [GO:0007049 "cell cycle" evidence=IEA] [GO:0007050
"cell cycle arrest" evidence=ISO] [GO:0008285 "negative regulation
of cell proliferation" evidence=ISO] [GO:0008380 "RNA splicing"
evidence=IEA] [GO:0010830 "regulation of myotube differentiation"
evidence=IDA] [GO:0030154 "cell differentiation" evidence=IEA]
[GO:0043484 "regulation of RNA splicing" evidence=ISO] [GO:0070935
"3'-UTR-mediated mRNA stabilization" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1889294 GO:GO:0005829 GO:GO:0005634
GO:GO:0008285 GO:GO:0030154 GO:GO:0006977 GO:GO:0008380
GO:GO:0000166 GO:GO:0003729 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0007050 EMBL:CH466551 GO:GO:0003730 GO:GO:0043484
GO:GO:0006978 HOGENOM:HOG000276232 GO:GO:0070935 EMBL:AL928599
GO:GO:0010830 HOVERGEN:HBG108399 GeneTree:ENSGT00390000002308
OrthoDB:EOG4DV5NS eggNOG:NOG248750 CTD:55544 OMA:VGYGYPA
EMBL:X75316 EMBL:AK146026 EMBL:AK162141 EMBL:AK172625 EMBL:BC085307
IPI:IPI00122313 PIR:S38384 RefSeq:NP_062420.2 UniGene:Mm.485782
ProteinModelPortal:Q62176 SMR:Q62176 STRING:Q62176
PhosphoSite:Q62176 PaxDb:Q62176 PRIDE:Q62176
Ensembl:ENSMUST00000029014 Ensembl:ENSMUST00000173393 GeneID:56190
KEGG:mmu:56190 UCSC:uc008odh.1 InParanoid:Q5U418 ChiTaRS:RBM38
NextBio:311992 Bgee:Q62176 CleanEx:MM_RBM38 Genevestigator:Q62176
GermOnline:ENSMUSG00000027510 Uniprot:Q62176
Length = 237
Score = 163 (62.4 bits), Expect = 3.9e-12, P = 3.9e-12
Identities = 33/43 (76%), Positives = 36/43 (83%)
Query: 1 MGDRPAAERACKDPNPIIDGRKANVNLAILGAKPRGTLPPGIS 43
M DR AA+RACKDPNPIIDGRKANVNLA LGAKPR +L G +
Sbjct: 80 MADRAAADRACKDPNPIIDGRKANVNLAYLGAKPR-SLQTGFA 121
>RGD|1308503 [details] [associations]
symbol:Rbm38 "RNA binding motif protein 38" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003730 "mRNA 3'-UTR binding" evidence=IEA] [GO:0006977 "DNA
damage response, signal transduction by p53 class mediator
resulting in cell cycle arrest" evidence=IEA] [GO:0006978 "DNA
damage response, signal transduction by p53 class mediator
resulting in transcription of p21 class mediator" evidence=IEA]
[GO:0007050 "cell cycle arrest" evidence=IEA] [GO:0008285 "negative
regulation of cell proliferation" evidence=IEA] [GO:0010830
"regulation of myotube differentiation" evidence=IEA] [GO:0043484
"regulation of RNA splicing" evidence=IEA] [GO:0070935
"3'-UTR-mediated mRNA stabilization" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1308503 GO:GO:0008285 GO:GO:0006977 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0007050 GO:GO:0003730 GO:GO:0043484
GO:GO:0006978 GO:GO:0070935 GO:GO:0010830 EMBL:CH474062
GeneTree:ENSGT00390000002308 OrthoDB:EOG4DV5NS OMA:VGYGYPA
IPI:IPI00190605 UniGene:Rn.17628 Ensembl:ENSRNOT00000008764
Uniprot:D3ZGE9
Length = 237
Score = 163 (62.4 bits), Expect = 3.9e-12, P = 3.9e-12
Identities = 33/43 (76%), Positives = 36/43 (83%)
Query: 1 MGDRPAAERACKDPNPIIDGRKANVNLAILGAKPRGTLPPGIS 43
M DR AA+RACKDPNPIIDGRKANVNLA LGAKPR +L G +
Sbjct: 80 MADRAAADRACKDPNPIIDGRKANVNLAYLGAKPR-SLQTGFA 121
>ZFIN|ZDB-GENE-030131-5923 [details] [associations]
symbol:rbm38 "RNA binding motif protein 38"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-030131-5923 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000276232 HSSP:Q61474
HOVERGEN:HBG108399 EMBL:AB097829 IPI:IPI00861911 UniGene:Dr.80564
ProteinModelPortal:Q7T2V9 SMR:Q7T2V9 STRING:Q7T2V9
InParanoid:Q7T2V9 Uniprot:Q7T2V9
Length = 246
Score = 162 (62.1 bits), Expect = 5.0e-12, P = 5.0e-12
Identities = 32/38 (84%), Positives = 33/38 (86%)
Query: 1 MGDRPAAERACKDPNPIIDGRKANVNLAILGAKPRGTL 38
M D+ AAERACKDPNPIIDGRKANVNLA LGAKPR L
Sbjct: 73 MMDKSAAERACKDPNPIIDGRKANVNLAYLGAKPRSPL 110
>WB|WBGene00006321 [details] [associations]
symbol:sup-12 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000380
"alternative mRNA splicing, via spliceosome" evidence=IMP]
[GO:0040012 "regulation of locomotion" evidence=IGI] [GO:0032956
"regulation of actin cytoskeleton organization" evidence=IGI]
[GO:0016607 "nuclear speck" evidence=IDA] [GO:0036002 "pre-mRNA
binding" evidence=IPI] [GO:0000381 "regulation of alternative mRNA
splicing, via spliceosome" evidence=IMP] [GO:0097157 "pre-mRNA
intronic binding" evidence=IPI] [GO:0030529 "ribonucleoprotein
complex" evidence=IPI] [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 GO:GO:0016607 Gene3D:3.30.70.330
GO:GO:0040012 GO:GO:0030529 GO:GO:0032956 GO:GO:0097157
GO:GO:0000380 HSSP:P09651 HOGENOM:HOG000276232
GeneTree:ENSGT00390000002308 EMBL:FO081409 GeneID:180674
KEGG:cel:CELE_T22B2.4 CTD:180674 PIR:T33034 RefSeq:NP_508674.1
ProteinModelPortal:O45189 SMR:O45189 DIP:DIP-24970N IntAct:O45189
MINT:MINT-1047167 STRING:O45189 EnsemblMetazoa:T22B2.4a
UCSC:T22B2.4 WormBase:T22B2.4a InParanoid:O45189 OMA:DRNTQKS
NextBio:910400 ArrayExpress:O45189 Uniprot:O45189
Length = 248
Score = 160 (61.4 bits), Expect = 8.2e-12, P = 8.2e-12
Identities = 31/35 (88%), Positives = 32/35 (91%)
Query: 1 MGDRPAAERACKDPNPIIDGRKANVNLAILGAKPR 35
M DR +AERACKDPNPIIDGRKANVNLA LGAKPR
Sbjct: 83 MKDRASAERACKDPNPIIDGRKANVNLAYLGAKPR 117
>UNIPROTKB|O45189 [details] [associations]
symbol:sup-12 "Protein SUP-12, isoform a" species:6239
"Caenorhabditis elegans" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 GO:GO:0016607
Gene3D:3.30.70.330 GO:GO:0040012 GO:GO:0030529 GO:GO:0032956
GO:GO:0097157 GO:GO:0000380 HSSP:P09651 HOGENOM:HOG000276232
GeneTree:ENSGT00390000002308 EMBL:FO081409 GeneID:180674
KEGG:cel:CELE_T22B2.4 CTD:180674 PIR:T33034 RefSeq:NP_508674.1
ProteinModelPortal:O45189 SMR:O45189 DIP:DIP-24970N IntAct:O45189
MINT:MINT-1047167 STRING:O45189 EnsemblMetazoa:T22B2.4a
UCSC:T22B2.4 WormBase:T22B2.4a InParanoid:O45189 OMA:DRNTQKS
NextBio:910400 ArrayExpress:O45189 Uniprot:O45189
Length = 248
Score = 160 (61.4 bits), Expect = 8.2e-12, P = 8.2e-12
Identities = 31/35 (88%), Positives = 32/35 (91%)
Query: 1 MGDRPAAERACKDPNPIIDGRKANVNLAILGAKPR 35
M DR +AERACKDPNPIIDGRKANVNLA LGAKPR
Sbjct: 83 MKDRASAERACKDPNPIIDGRKANVNLAYLGAKPR 117
>UNIPROTKB|E1BLB7 [details] [associations]
symbol:RBM38 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0070935 "3'-UTR-mediated mRNA stabilization"
evidence=IEA] [GO:0043484 "regulation of RNA splicing"
evidence=IEA] [GO:0010830 "regulation of myotube differentiation"
evidence=IEA] [GO:0008285 "negative regulation of cell
proliferation" evidence=IEA] [GO:0007050 "cell cycle arrest"
evidence=IEA] [GO:0006978 "DNA damage response, signal transduction
by p53 class mediator resulting in transcription of p21 class
mediator" evidence=IEA] [GO:0006977 "DNA damage response, signal
transduction by p53 class mediator resulting in cell cycle arrest"
evidence=IEA] [GO:0003730 "mRNA 3'-UTR binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0008285 GO:GO:0006977 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0007050 GO:GO:0003730 GO:GO:0043484 GO:GO:0006978
GO:GO:0070935 GO:GO:0010830 GeneTree:ENSGT00390000002308 CTD:55544
OMA:VGYGYPA EMBL:DAAA02036351 IPI:IPI00696591 RefSeq:NP_001192952.1
UniGene:Bt.106613 ProteinModelPortal:E1BLB7
Ensembl:ENSBTAT00000010660 GeneID:533516 KEGG:bta:533516
NextBio:20876057 Uniprot:E1BLB7
Length = 239
Score = 159 (61.0 bits), Expect = 1.0e-11, P = 1.0e-11
Identities = 33/43 (76%), Positives = 35/43 (81%)
Query: 1 MGDRPAAERACKDPNPIIDGRKANVNLAILGAKPRGTLPPGIS 43
M DR AAERACKDPNP IDGRKANVNLA LGAKPR +L G +
Sbjct: 82 MADRAAAERACKDPNPNIDGRKANVNLAYLGAKPR-SLQTGFA 123
>UNIPROTKB|A5GFN7 [details] [associations]
symbol:RNPC1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HOGENOM:HOG000276232 EMBL:CR956362 HOVERGEN:HBG108399
GeneTree:ENSGT00390000002308 UniGene:Ssc.29738
ProteinModelPortal:A5GFN7 STRING:A5GFN7 Ensembl:ENSSSCT00000033672
ArrayExpress:A5GFN7 Uniprot:A5GFN7
Length = 193
Score = 159 (61.0 bits), Expect = 1.0e-11, P = 1.0e-11
Identities = 33/43 (76%), Positives = 35/43 (81%)
Query: 1 MGDRPAAERACKDPNPIIDGRKANVNLAILGAKPRGTLPPGIS 43
M DR AAERACKDPNP IDGRKANVNLA LGAKPR +L G +
Sbjct: 82 MADRAAAERACKDPNPNIDGRKANVNLAYLGAKPR-SLQTGFA 123
>UNIPROTKB|A5GFN8 [details] [associations]
symbol:RNPC1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0070935 "3'-UTR-mediated mRNA stabilization"
evidence=IEA] [GO:0043484 "regulation of RNA splicing"
evidence=IEA] [GO:0010830 "regulation of myotube differentiation"
evidence=IEA] [GO:0008285 "negative regulation of cell
proliferation" evidence=IEA] [GO:0007050 "cell cycle arrest"
evidence=IEA] [GO:0006978 "DNA damage response, signal transduction
by p53 class mediator resulting in transcription of p21 class
mediator" evidence=IEA] [GO:0006977 "DNA damage response, signal
transduction by p53 class mediator resulting in cell cycle arrest"
evidence=IEA] [GO:0003730 "mRNA 3'-UTR binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0008285 GO:GO:0006977 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0007050 GO:GO:0003730 GO:GO:0043484 GO:GO:0006978
HOGENOM:HOG000276232 GO:GO:0070935 GO:GO:0010830 EMBL:CR956362
HOVERGEN:HBG108399 GeneTree:ENSGT00390000002308 OrthoDB:EOG4DV5NS
CTD:55544 OMA:VGYGYPA UniGene:Ssc.29738 RefSeq:NP_001098782.1
SMR:A5GFN8 STRING:A5GFN8 Ensembl:ENSSSCT00000008216
GeneID:100125973 KEGG:ssc:100125973 Uniprot:A5GFN8
Length = 239
Score = 159 (61.0 bits), Expect = 1.0e-11, P = 1.0e-11
Identities = 33/43 (76%), Positives = 35/43 (81%)
Query: 1 MGDRPAAERACKDPNPIIDGRKANVNLAILGAKPRGTLPPGIS 43
M DR AAERACKDPNP IDGRKANVNLA LGAKPR +L G +
Sbjct: 82 MADRAAAERACKDPNPNIDGRKANVNLAYLGAKPR-SLQTGFA 123
>TAIR|locus:2011726 [details] [associations]
symbol:AT1G76460 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA;ISS] [GO:0003723 "RNA binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] [GO:0048573 "photoperiodism,
flowering" evidence=RCA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:CP002684
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 UniGene:At.43912
UniGene:At.70089 IPI:IPI00542968 RefSeq:NP_565132.2
UniGene:At.69045 ProteinModelPortal:F4I2E4 SMR:F4I2E4 PRIDE:F4I2E4
EnsemblPlants:AT1G76460.1 GeneID:843979 KEGG:ath:AT1G76460
OMA:YGPEYMY Uniprot:F4I2E4
Length = 285
Score = 119 (46.9 bits), Expect = 6.7e-07, P = 6.7e-07
Identities = 25/37 (67%), Positives = 27/37 (72%)
Query: 3 DRPAAERACKDPNPIIDGRKANVNLAILGAKPRGTLP 39
D AA RAC DP PIIDGR+AN NLA LG +PR LP
Sbjct: 74 DPEAARRACADPTPIIDGRRANCNLASLG-RPRPPLP 109
>TAIR|locus:2196521 [details] [associations]
symbol:AT1G22330 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:AC068562 EMBL:CP002684 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 HSSP:P09651 HOGENOM:HOG000276232
ProtClustDB:CLSN2689288 IPI:IPI00540466 PIR:B86356
RefSeq:NP_564168.2 UniGene:At.41608 ProteinModelPortal:Q9LME7
SMR:Q9LME7 STRING:Q9LME7 PRIDE:Q9LME7 EnsemblPlants:AT1G22330.1
GeneID:838839 KEGG:ath:AT1G22330 TAIR:At1g22330 InParanoid:Q9LME7
OMA:TESHAPQ PhylomeDB:Q9LME7 Genevestigator:Q9LME7 Uniprot:Q9LME7
Length = 291
Score = 113 (44.8 bits), Expect = 3.2e-06, P = 3.2e-06
Identities = 27/59 (45%), Positives = 33/59 (55%)
Query: 3 DRPAAERACKDPNPIIDGRKANVNLAILGAKPRGTLPPGISHQRSLAL--GSNDFEYTG 59
D +A RA DPNP+IDGRKAN N+A G +PR + P G S + G YTG
Sbjct: 67 DSDSATRAVADPNPVIDGRKANCNIASFG-RPRPSTPRGRGQGGSPSQYQGGGQSSYTG 124
>TAIR|locus:2044370 [details] [associations]
symbol:AT2G46780 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000276232 EMBL:BT022057
IPI:IPI00944264 RefSeq:NP_182201.4 UniGene:At.22279
ProteinModelPortal:Q501B0 SMR:Q501B0 PRIDE:Q501B0
EnsemblPlants:AT2G46780.1 GeneID:819291 KEGG:ath:AT2G46780
TAIR:At2g46780 OMA:FPYSTYG PhylomeDB:Q501B0 ProtClustDB:CLSN2722623
Genevestigator:Q501B0 Uniprot:Q501B0
Length = 336
Score = 110 (43.8 bits), Expect = 9.1e-06, P = 9.1e-06
Identities = 27/49 (55%), Positives = 31/49 (63%)
Query: 6 AAERACKDPNPIIDGRKANVNLAILGA-KPRGTLPP--GISHQRSLALG 51
AA RAC++ NP+IDGR+AN NLA LGA KPR P G RS G
Sbjct: 75 AAMRACQNMNPVIDGRRANCNLACLGAQKPRPPTSPRHGTGRFRSPGSG 123
>TAIR|locus:2037370 [details] [associations]
symbol:AT1G20880 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002684 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
IPI:IPI00530203 RefSeq:NP_001185049.1 RefSeq:NP_564127.1
UniGene:At.26164 ProteinModelPortal:F4HUQ5 SMR:F4HUQ5 PRIDE:F4HUQ5
EnsemblPlants:AT1G20880.1 EnsemblPlants:AT1G20880.2 GeneID:838681
KEGG:ath:AT1G20880 OMA:MAYHSIP Uniprot:F4HUQ5
Length = 274
Score = 106 (42.4 bits), Expect = 1.7e-05, P = 1.7e-05
Identities = 22/33 (66%), Positives = 25/33 (75%)
Query: 3 DRPAAERACKDPNPIIDGRKANVNLAILG-AKP 34
D AA RAC DP PIIDGR+AN NLA LG ++P
Sbjct: 74 DPEAARRACVDPTPIIDGRRANCNLASLGRSRP 106
>TAIR|locus:2164042 [details] [associations]
symbol:AT5G53680 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA;ISS] [GO:0003723 "RNA binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=RCA] [GO:0006457 "protein folding"
evidence=RCA] [GO:0009408 "response to heat" evidence=RCA]
[GO:0009644 "response to high light intensity" evidence=RCA]
[GO:0042542 "response to hydrogen peroxide" evidence=RCA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724 EMBL:AB017066
HSSP:Q61474 IPI:IPI00517619 RefSeq:NP_200179.1 UniGene:At.55530
ProteinModelPortal:Q9FI08 SMR:Q9FI08 EnsemblPlants:AT5G53680.1
GeneID:835449 KEGG:ath:AT5G53680 TAIR:At5g53680
HOGENOM:HOG000152479 InParanoid:Q9FI08 PhylomeDB:Q9FI08
ProtClustDB:CLSN2916322 Genevestigator:Q9FI08 Uniprot:Q9FI08
Length = 169
Score = 100 (40.3 bits), Expect = 1.9e-05, P = 1.9e-05
Identities = 21/42 (50%), Positives = 26/42 (61%)
Query: 3 DRPAAERACKDPNPIIDGRKANVNLAILGAK--PRGTLPPGI 42
D +A RACKDPNP I+GR N LA +GAK P + P +
Sbjct: 63 DAESATRACKDPNPTIEGRITNCKLAFVGAKVKPNQSQPSNL 104
>TAIR|locus:2032120 [details] [associations]
symbol:AT1G78260 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002684 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HSSP:P09651 HOGENOM:HOG000276232 eggNOG:NOG248750 EMBL:AY084982
EMBL:BT030002 IPI:IPI00529893 RefSeq:NP_565175.1 UniGene:At.43623
ProteinModelPortal:Q8LF90 SMR:Q8LF90 STRING:Q8LF90
EnsemblPlants:AT1G78260.1 GeneID:844161 KEGG:ath:AT1G78260
TAIR:At1g78260 InParanoid:Q8LF90 OMA:SPYYYGY PhylomeDB:Q8LF90
ProtClustDB:CLSN2689288 Genevestigator:Q8LF90 Uniprot:Q8LF90
Length = 287
Score = 103 (41.3 bits), Expect = 4.0e-05, P = 4.0e-05
Identities = 21/36 (58%), Positives = 26/36 (72%)
Query: 6 AAERACKDPNPIIDGRKANVNLAILGAKPRGTLPPG 41
+A RA DPNP+IDGRKAN N+A G +PR + P G
Sbjct: 70 SATRAVADPNPVIDGRKANCNIASFG-RPRPSPPRG 104
>TAIR|locus:2006998 [details] [associations]
symbol:AT1G33470 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005576 "extracellular region" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=RCA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:CP002684
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HOGENOM:HOG000276232 EMBL:AK176398 IPI:IPI00533784
RefSeq:NP_174613.2 UniGene:At.17522 UniGene:At.67846
ProteinModelPortal:Q67YS0 SMR:Q67YS0 PaxDb:Q67YS0 PRIDE:Q67YS0
EnsemblPlants:AT1G33470.1 GeneID:840240 KEGG:ath:AT1G33470
TAIR:At1g33470 InParanoid:Q67YS0 OMA:GAQYPFY PhylomeDB:Q67YS0
ProtClustDB:CLSN2680737 ArrayExpress:Q67YS0 Genevestigator:Q67YS0
Uniprot:Q67YS0
Length = 245
Score = 99 (39.9 bits), Expect = 7.9e-05, P = 7.9e-05
Identities = 18/31 (58%), Positives = 23/31 (74%)
Query: 3 DRPAAERACKDPNPIIDGRKANVNLAILGAK 33
D AA++AC DP P+IDGR+AN NLA G +
Sbjct: 57 DPEAAQKACVDPAPVIDGRRANCNLAAFGVQ 87
>TAIR|locus:2102435 [details] [associations]
symbol:ARP1 "ABA-regulated RNA-binding protein 1"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0009507
"chloroplast" evidence=ISM] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=RCA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0009414 "response to water deprivation" evidence=IMP]
[GO:0009651 "response to salt stress" evidence=IMP] [GO:0009737
"response to abscisic acid stimulus" evidence=IEP] [GO:0010029
"regulation of seed germination" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009737 GO:GO:0005634 EMBL:CP002686 GO:GO:0000166
GO:GO:0009651 GO:GO:0009414 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0010029 EMBL:AL138650 HSSP:P11940 IPI:IPI00531276 PIR:T47636
RefSeq:NP_191037.1 UniGene:At.20812 ProteinModelPortal:Q9M1S3
SMR:Q9M1S3 DNASU:824642 EnsemblPlants:AT3G54770.1 GeneID:824642
KEGG:ath:AT3G54770 TAIR:At3g54770 InParanoid:Q9M1S3 OMA:FYHFHQS
PhylomeDB:Q9M1S3 ProtClustDB:CLSN2685114 Genevestigator:Q9M1S3
Uniprot:Q9M1S3
Length = 261
Score = 99 (39.9 bits), Expect = 9.0e-05, P = 9.0e-05
Identities = 20/33 (60%), Positives = 24/33 (72%)
Query: 3 DRPAAERACKDPNPIIDGRKANVNLAILGAKPR 35
D AA RAC+D PII+GR+AN NLA LG + R
Sbjct: 67 DAKAATRACEDSTPIINGRRANCNLASLGGRLR 99
>TAIR|locus:4515103555 [details] [associations]
symbol:AT5G11412 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005576 "extracellular region"
evidence=ISM] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:CP002688 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:DQ487706 IPI:IPI00775531 RefSeq:NP_001119208.1
UniGene:At.69225 ProteinModelPortal:Q1G378 SMR:Q1G378 STRING:Q1G378
EnsemblPlants:AT5G11412.1 GeneID:6240527 KEGG:ath:AT5G11412
TAIR:At5g11412 OMA:IDGREAK PhylomeDB:Q1G378 ProtClustDB:CLSN2925591
Genevestigator:Q1G378 Uniprot:Q1G378
Length = 175
Score = 94 (38.1 bits), Expect = 0.00011, P = 0.00011
Identities = 24/76 (31%), Positives = 38/76 (50%)
Query: 3 DRPAAERACKDPNPIIDGRKANVNLAILGAKPRGTLPPGISHQRSLAL--GSNDFEYTGW 60
D +A RAC++P P+IDGR+A NLA +G + Q+ L + F +
Sbjct: 102 DAESATRACQNPKPVIDGREAKCNLAYIGGRVNNN--QNAQQQQVLPMYPTGTSFHHPNI 159
Query: 61 -PSFLMIYVHMGSILT 75
P+ LM+ H ++ T
Sbjct: 160 IPTHLMVIGHPMALTT 175
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.322 0.142 0.447 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 94 94 0.00091 102 3 11 22 0.37 30
29 0.42 31
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 38
No. of states in DFA: 551 (59 KB)
Total size of DFA: 109 KB (2073 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 9.68u 0.08s 9.76t Elapsed: 00:00:17
Total cpu time: 9.68u 0.08s 9.76t Elapsed: 00:00:17
Start: Thu Aug 15 11:47:31 2013 End: Thu Aug 15 11:47:48 2013