RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy16924
(94 letters)
>d2cqda1 d.58.7.1 (A:1-103) RNA-binding region containing protein 1
{Human (Homo sapiens) [TaxId: 9606]}
Length = 103
Score = 41.3 bits (96), Expect = 8e-07
Identities = 34/43 (79%), Positives = 36/43 (83%), Gaps = 1/43 (2%)
Query: 1 MGDRPAAERACKDPNPIIDGRKANVNLAILGAKPRGTLPPGIS 43
M DR AAERACKDPNPIIDGRKANVNLA LGAKPR +L G +
Sbjct: 59 MADRAAAERACKDPNPIIDGRKANVNLAYLGAKPR-SLQTGFA 100
>d1uawa_ d.58.7.1 (A:) Musashi-1 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 77
Score = 29.6 bits (66), Expect = 0.016
Identities = 3/26 (11%), Positives = 10/26 (38%)
Query: 3 DRPAAERACKDPNPIIDGRKANVNLA 28
D+ ++ +D + + +A
Sbjct: 51 DQAGVDKVLAQSRHELDSKTIDPKVA 76
>d1x0fa1 d.58.7.1 (A:183-257) Nuclear ribonucleoprotein D0 (AUF1)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 75
Score = 29.2 bits (65), Expect = 0.019
Identities = 2/28 (7%), Positives = 9/28 (32%)
Query: 1 MGDRPAAERACKDPNPIIDGRKANVNLA 28
+ ++ + + K + +A
Sbjct: 48 FKEEEPVKKIMEKKYHNVGLSKCEIKVA 75
>d2msta_ d.58.7.1 (A:) Neural RNA-binding protein Musashi-1 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 75
Score = 28.5 bits (63), Expect = 0.034
Identities = 4/28 (14%), Positives = 8/28 (28%)
Query: 1 MGDRPAAERACKDPNPIIDGRKANVNLA 28
E+ C+ I+ + A
Sbjct: 48 FESEDIVEKVCEIHFHEINNKMVECKKA 75
>d2u2fa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human
(Homo sapiens) [TaxId: 9606]}
Length = 85
Score = 28.4 bits (63), Expect = 0.055
Identities = 9/34 (26%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
Query: 1 MGDRPAAERACKDPNPI-IDGRKANVNLAILGAK 33
D ++A N + + +K V A +GAK
Sbjct: 50 YVDINVTDQAIAGLNGMQLGDKKLLVQRASVGAK 83
>d1u1qa_ d.58.7.1 (A:) Nuclear ribonucleoprotein A1 (RNP A1, UP1)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 183
Score = 28.8 bits (63), Expect = 0.067
Identities = 4/29 (13%), Positives = 10/29 (34%)
Query: 1 MGDRPAAERACKDPNPIIDGRKANVNLAI 29
D + ++ ++G V A+
Sbjct: 146 FDDHDSVDKIVIQKYHTVNGHNCEVRKAL 174
>d1hd0a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein d0
{Human (Homo sapiens) [TaxId: 9606]}
Length = 75
Score = 27.6 bits (61), Expect = 0.091
Identities = 2/26 (7%), Positives = 10/26 (38%)
Query: 3 DRPAAERACKDPNPIIDGRKANVNLA 28
+ + ++ ++G+ + A
Sbjct: 50 ESESVDKVMDQKEHKLNGKVIDPKRA 75
>d2cpfa1 d.58.7.1 (A:362-446) Probable RNA-binding protein 19,
Rbm19 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 85
Score = 26.1 bits (57), Expect = 0.31
Identities = 9/35 (25%), Positives = 14/35 (40%), Gaps = 1/35 (2%)
Query: 1 MGDRPAAERACKDPNP-IIDGRKANVNLAILGAKP 34
A++A K +DG K V ++ KP
Sbjct: 50 YKKPEQAQKALKQLQGHTVDGHKLEVRISERATKP 84
>d2ghpa3 d.58.7.1 (A:206-291) U4/U6 snRNA-associated-splicing
factor PRP24 {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 86
Score = 26.2 bits (57), Expect = 0.35
Identities = 8/28 (28%), Positives = 17/28 (60%)
Query: 1 MGDRPAAERACKDPNPIIDGRKANVNLA 28
++ +AERA + ++ R+ +V+LA
Sbjct: 55 FENKDSAERALQMNRSLLGNREISVSLA 82
>d1hkqa_ a.4.5.10 (A:) Replication protein A, repA {Pseudomonas
syringae pv. savastanoi [TaxId: 29438]}
Length = 125
Score = 25.9 bits (57), Expect = 0.51
Identities = 6/33 (18%), Positives = 11/33 (33%), Gaps = 1/33 (3%)
Query: 53 NDFEYTGWPSFLMIYVHMGSILTFEFNPFLKPY 85
E W + Y + F+P + P+
Sbjct: 80 KVVERMRWVFH-VKYREGQGCVELGFSPTIIPH 111
>d1gs5a_ c.73.1.2 (A:) N-acetyl-l-glutamate kinase {Escherichia coli
[TaxId: 562]}
Length = 258
Score = 25.5 bits (54), Expect = 1.1
Identities = 10/36 (27%), Positives = 12/36 (33%), Gaps = 3/36 (8%)
Query: 6 AAERACKDPNP---IIDGRKANVNLAILGAKPRGTL 38
AA A + I R A A+ P GT
Sbjct: 220 AALDAARTLGRPVDIASWRHAEQLPALFNGMPMGTR 255
>d1repc1 a.4.5.10 (C:15-143) RepE54 {Escherichia coli, mini-F
plasmid [TaxId: 562]}
Length = 129
Score = 24.0 bits (52), Expect = 2.8
Identities = 5/25 (20%), Positives = 12/25 (48%), Gaps = 1/25 (4%)
Query: 67 YVHMGSILTFEFNPFLKPYPISGIK 91
+ + + NP+L P+ G++
Sbjct: 106 HSPSRGLYSVHINPYLIPF-FIGLQ 129
>d1ybda1 c.73.1.3 (A:6-241) Uridylate kinase PyrH {Neisseria
meningitidis [TaxId: 487]}
Length = 236
Score = 24.2 bits (51), Expect = 3.1
Identities = 4/22 (18%), Positives = 8/22 (36%)
Query: 17 IIDGRKANVNLAILGAKPRGTL 38
+ K ++ + GTL
Sbjct: 212 VFGIAKEGSLKRVITGEDEGTL 233
>d1z9da1 c.73.1.3 (A:4-241) Uridylate kinase PyrH {Streptococcus
pyogenes [TaxId: 1314]}
Length = 238
Score = 23.8 bits (50), Expect = 4.8
Identities = 3/22 (13%), Positives = 9/22 (40%)
Query: 17 IIDGRKANVNLAILGAKPRGTL 38
+ + +A ++ + GT
Sbjct: 213 VFNMNEAGNIQRVVFGEHIGTT 234
>d2nrac1 a.4.5.10 (C:9-151) Replication initiation protein PI
{Escherichia coli [TaxId: 562]}
Length = 143
Score = 23.3 bits (50), Expect = 4.9
Identities = 5/19 (26%), Positives = 9/19 (47%)
Query: 67 YVHMGSILTFEFNPFLKPY 85
Y L+ +F ++PY
Sbjct: 118 YSPDEGYLSLKFTRTIEPY 136
>d2pbea2 d.218.1.13 (A:1-135) Aminoglycoside 6-adenylyltransferase
AadK {Bacillus subtilis [TaxId: 1423]}
Length = 135
Score = 22.9 bits (49), Expect = 6.4
Identities = 4/23 (17%), Positives = 11/23 (47%)
Query: 45 QRSLALGSNDFEYTGWPSFLMIY 67
Q+ + E W S+++++
Sbjct: 72 QKPEDMELFPPELGNWFSYIILF 94
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.322 0.142 0.447
Gapped
Lambda K H
0.267 0.0553 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 368,469
Number of extensions: 14435
Number of successful extensions: 35
Number of sequences better than 10.0: 1
Number of HSP's gapped: 35
Number of HSP's successfully gapped: 16
Length of query: 94
Length of database: 2,407,596
Length adjustment: 57
Effective length of query: 37
Effective length of database: 1,624,986
Effective search space: 60124482
Effective search space used: 60124482
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.3 bits)