BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy16925
(166 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2I13|A Chain A, Aart, A Six Finger Zinc Finger Designed To Recognize Ann
Triplets
pdb|2I13|B Chain B, Aart, A Six Finger Zinc Finger Designed To Recognize Ann
Triplets
Length = 190
Score = 79.7 bits (195), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 40/112 (35%), Positives = 60/112 (53%), Gaps = 14/112 (12%)
Query: 29 VTRFSSRSAVTAHTKAVHLGERPFVCHECGQSFASKGILQEHLTIHSDDAPWKCDICSKK 88
++ F S S+V A+ GE+P+ C ECG+SF+ L EH H+ + P+KC
Sbjct: 1 ISEFGSSSSVAQ--AALEPGEKPYACPECGKSFSRSDHLAEHQRTHTGEKPYKC------ 52
Query: 89 SLKLSNVSCGWYPDESKDLKNHHNLHTGKRPYTCPWCSRTFANGSNCRSHKR 140
CG + KDL H HTG++PY CP C ++F+ +N R+H+R
Sbjct: 53 ------PECGKSFSDKKDLTRHQRTHTGEKPYKCPECGKSFSQRANLRAHQR 98
Score = 75.9 bits (185), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 38/107 (35%), Positives = 58/107 (54%), Gaps = 12/107 (11%)
Query: 34 SRSAVTAHTKAVHLGERPFVCHECGQSFASKGILQEHLTIHSDDAPWKCDICSKKSLKLS 93
SRS A + H GE+P+ C ECG+SF+ K L H H+ + P+KC C K + +
Sbjct: 32 SRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQRTHTGEKPYKCPECGKSFSQRA 91
Query: 94 NVSCGWYPDESKDLKNHHNLHTGKRPYTCPWCSRTFANGSNCRSHKR 140
N L+ H HTG++PY CP C ++F+ ++ R+H+R
Sbjct: 92 N------------LRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQR 126
Score = 71.6 bits (174), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 55/109 (50%), Gaps = 13/109 (11%)
Query: 32 FSSRSAVTAHTKAVHLGERPFVCHECGQSFASKGILQEHLTIHSDDAPWKCDICSKKSLK 91
FS R+ + AH + H GE+P+ C ECG+SF+ L+ H H+ + P+KC C K +
Sbjct: 87 FSQRANLRAHQR-THTGEKPYACPECGKSFSQLAHLRAHQRTHTGEKPYKCPECGKSFSR 145
Query: 92 LSNVSCGWYPDESKDLKNHHNLHTGKRPYTCPWCSRTFANGSNCRSHKR 140
N L H HTG++PY CP C ++F+ H+R
Sbjct: 146 EDN------------LHTHQRTHTGEKPYKCPECGKSFSRRDALNVHQR 182
Score = 48.5 bits (114), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 35/65 (53%), Gaps = 1/65 (1%)
Query: 23 YSLALMVTRFSSRSAVTAHTKAVHLGERPFVCHECGQSFASKGILQEHLTIHSDDAPWKC 82
Y+ FS + + AH + H GE+P+ C ECG+SF+ + L H H+ + P+KC
Sbjct: 106 YACPECGKSFSQLAHLRAHQR-THTGEKPYKCPECGKSFSREDNLHTHQRTHTGEKPYKC 164
Query: 83 DICSK 87
C K
Sbjct: 165 PECGK 169
>pdb|1MEY|C Chain C, Crystal Structure Of A Designed Zinc Finger Protein Bound
To Dna
pdb|1MEY|F Chain F, Crystal Structure Of A Designed Zinc Finger Protein Bound
To Dna
pdb|1MEY|G Chain G, Crystal Structure Of A Designed Zinc Finger Protein Bound
To Dna
Length = 87
Score = 68.9 bits (167), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 49/92 (53%), Gaps = 12/92 (13%)
Query: 49 ERPFVCHECGQSFASKGILQEHLTIHSDDAPWKCDICSKKSLKLSNVSCGWYPDESKDLK 108
E+P+ C ECG+SF+ LQ+H H+ + P+KC CG +S DL+
Sbjct: 2 EKPYKCPECGKSFSQSSNLQKHQRTHTGEKPYKC------------PECGKSFSQSSDLQ 49
Query: 109 NHHNLHTGKRPYTCPWCSRTFANGSNCRSHKR 140
H HTG++PY CP C ++F+ + H+R
Sbjct: 50 KHQRTHTGEKPYKCPECGKSFSRSDHLSRHQR 81
Score = 52.4 bits (124), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 33/56 (58%), Gaps = 1/56 (1%)
Query: 32 FSSRSAVTAHTKAVHLGERPFVCHECGQSFASKGILQEHLTIHSDDAPWKCDICSK 87
FS S + H + H GE+P+ C ECG+SF+ LQ+H H+ + P+KC C K
Sbjct: 14 FSQSSNLQKHQR-THTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKPYKCPECGK 68
Score = 36.6 bits (83), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Query: 32 FSSRSAVTAHTKAVHLGERPFVCHECGQSFASKGILQEHLTIHSD 76
FS S + H + H GE+P+ C ECG+SF+ L H H +
Sbjct: 42 FSQSSDLQKHQR-THTGEKPYKCPECGKSFSRSDHLSRHQRTHQN 85
>pdb|2KMK|A Chain A, Gfi-1 Zinc Fingers 3-5 Complexed With Dna
Length = 82
Score = 60.8 bits (146), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 45/90 (50%), Gaps = 12/90 (13%)
Query: 52 FVCHECGQSFASKGILQEHLTIHSDDAPWKCDICSKKSLKLSNVSCGWYPDESKDLKNHH 111
F C CG+SF L HL IHSD P+ C C K+ + S D+K H
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKS------------DMKKHT 49
Query: 112 NLHTGKRPYTCPWCSRTFANGSNCRSHKRR 141
+HTG++P+ C C + F+ SN +H R+
Sbjct: 50 FIHTGEKPHKCQVCGKAFSQSSNLITHSRK 79
Score = 44.3 bits (103), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
Query: 32 FSSRSAVTAHTKAVHLGERPFVCHECGQSFASKGILQEHLTIHSDDAPWKCDICSKKSLK 91
F S ++ H +H RP+ C CG+ F K +++H IH+ + P KC +C K +
Sbjct: 11 FKRSSTLSTHL-LIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQVCGKAFSQ 69
Query: 92 LSNV 95
SN+
Sbjct: 70 SSNL 73
>pdb|1UBD|C Chain C, Co-Crystal Structure Of Human Yy1 Zinc Finger Domain Bound
To The Adeno-Associated Virus P5 Initiator Element
Length = 124
Score = 60.8 bits (146), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 47/93 (50%), Gaps = 12/93 (12%)
Query: 48 GERPFVCHECGQSFASKGILQEHLTIHSDDAPWKCDICSKKSLKLSNVSCGWYPDESKDL 107
G R VC ECG++F L+ H +H+ + P++C CG +L
Sbjct: 31 GPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTF----------EGCGKRFSLDFNL 80
Query: 108 KNHHNLHTGKRPYTCPW--CSRTFANGSNCRSH 138
+ H +HTG RPY CP+ C++ FA +N +SH
Sbjct: 81 RTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSH 113
>pdb|1A1H|A Chain A, Qgsr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac Site)
Length = 90
Score = 53.9 bits (128), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 42/92 (45%), Gaps = 14/92 (15%)
Query: 49 ERPFVC--HECGQSFASKGILQEHLTIHSDDAPWKCDICSKKSLKLSNVSCGWYPDESKD 106
ERP+ C C + F+ G L H+ IH+ P++C IC + N S S
Sbjct: 2 ERPYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRIC------MRNFS------RSDH 49
Query: 107 LKNHHNLHTGKRPYTCPWCSRTFANGSNCRSH 138
L H HTG++P+ C C R FA + H
Sbjct: 50 LTTHIRTHTGEKPFACDICGRKFARSDERKRH 81
Score = 49.3 bits (116), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 35/58 (60%), Gaps = 1/58 (1%)
Query: 31 RFSSRSAVTAHTKAVHLGERPFVCHECGQSFASKGILQEHLTIHSDDAPWKCDICSKK 88
RFS ++T H + +H G++PF C C ++F+ L H+ H+ + P+ CDIC +K
Sbjct: 15 RFSQSGSLTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRK 71
Score = 35.8 bits (81), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Query: 23 YSLALMVTRFSSRSAVTAHTKAVHLGERPFVCHECGQSFASKGILQEHLTIH 74
+ + + FS +T H + H GE+PF C CG+ FA + H IH
Sbjct: 35 FQCRICMRNFSRSDHLTTHIR-THTGEKPFACDICGRKFARSDERKRHTKIH 85
Score = 32.7 bits (73), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 23/45 (51%)
Query: 96 SCGWYPDESKDLKNHHNLHTGKRPYTCPWCSRTFANGSNCRSHKR 140
SC +S L H +HTG++P+ C C R F+ + +H R
Sbjct: 11 SCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIR 55
>pdb|1G2F|C Chain C, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX
(Tatazf;clone #6)
pdb|1G2F|F Chain F, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX
(Tatazf;clone #6)
Length = 90
Score = 51.6 bits (122), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 37/62 (59%), Gaps = 1/62 (1%)
Query: 31 RFSSRSAVTAHTKAVHLGERPFVCHECGQSFASKGILQEHLTIHSDDAPWKCDICSKKSL 90
RFS ++ + H + +H G++PF C C ++F+ + L H+ H+ + P+ CDIC +K
Sbjct: 15 RFSQKTNLDTHIR-IHTGQKPFQCRICMRNFSQQASLNAHIRTHTGEKPFACDICGRKFA 73
Query: 91 KL 92
L
Sbjct: 74 TL 75
Score = 51.2 bits (121), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 40/84 (47%), Gaps = 14/84 (16%)
Query: 49 ERPFVC--HECGQSFASKGILQEHLTIHSDDAPWKCDICSKKSLKLSNVSCGWYPDESKD 106
ERP+ C C + F+ K L H+ IH+ P++C IC + N S +
Sbjct: 2 ERPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRIC------MRNFS------QQAS 49
Query: 107 LKNHHNLHTGKRPYTCPWCSRTFA 130
L H HTG++P+ C C R FA
Sbjct: 50 LNAHIRTHTGEKPFACDICGRKFA 73
Score = 37.7 bits (86), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Query: 23 YSLALMVTRFSSRSAVTAHTKAVHLGERPFVCHECGQSFASKGILQEHLTIH 74
+ + + FS ++++ AH + H GE+PF C CG+ FA+ H IH
Sbjct: 35 FQCRICMRNFSQQASLNAHIR-THTGEKPFACDICGRKFATLHTRTRHTKIH 85
Score = 33.5 bits (75), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 24/45 (53%)
Query: 96 SCGWYPDESKDLKNHHNLHTGKRPYTCPWCSRTFANGSNCRSHKR 140
SC + +L H +HTG++P+ C C R F+ ++ +H R
Sbjct: 11 SCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIR 55
>pdb|1A1I|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac Site)
pdb|1A1J|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcgt Site)
pdb|1A1K|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc Site)
Length = 90
Score = 51.6 bits (122), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 41/92 (44%), Gaps = 14/92 (15%)
Query: 49 ERPFVC--HECGQSFASKGILQEHLTIHSDDAPWKCDICSKKSLKLSNVSCGWYPDESKD 106
ERP+ C C + F+ L H+ IH+ P++C IC + N S S
Sbjct: 2 ERPYACPVESCDRRFSRSADLTRHIRIHTGQKPFQCRIC------MRNFS------RSDH 49
Query: 107 LKNHHNLHTGKRPYTCPWCSRTFANGSNCRSH 138
L H HTG++P+ C C R FA + H
Sbjct: 50 LTTHIRTHTGEKPFACDICGRKFARSDERKRH 81
Score = 48.9 bits (115), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 35/58 (60%), Gaps = 1/58 (1%)
Query: 31 RFSSRSAVTAHTKAVHLGERPFVCHECGQSFASKGILQEHLTIHSDDAPWKCDICSKK 88
RFS + +T H + +H G++PF C C ++F+ L H+ H+ + P+ CDIC +K
Sbjct: 15 RFSRSADLTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRK 71
Score = 36.2 bits (82), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Query: 23 YSLALMVTRFSSRSAVTAHTKAVHLGERPFVCHECGQSFASKGILQEHLTIH 74
+ + + FS +T H + H GE+PF C CG+ FA + H IH
Sbjct: 35 FQCRICMRNFSRSDHLTTHIR-THTGEKPFACDICGRKFARSDERKRHTKIH 85
Score = 35.0 bits (79), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 23/45 (51%)
Query: 96 SCGWYPDESKDLKNHHNLHTGKRPYTCPWCSRTFANGSNCRSHKR 140
SC S DL H +HTG++P+ C C R F+ + +H R
Sbjct: 11 SCDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIR 55
>pdb|1JK1|A Chain A, Zif268 D20a Mutant Bound To Wt Dna Site
pdb|1JK2|A Chain A, Zif268 D20a Mutant Bound To The Gct Dna Site
Length = 90
Score = 51.6 bits (122), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 41/92 (44%), Gaps = 14/92 (15%)
Query: 49 ERPFVC--HECGQSFASKGILQEHLTIHSDDAPWKCDICSKKSLKLSNVSCGWYPDESKD 106
ERP+ C C + F+ L H+ IH+ P++C IC + N S S
Sbjct: 2 ERPYACPVESCDRRFSRSAELTRHIRIHTGQKPFQCRIC------MRNFS------RSDH 49
Query: 107 LKNHHNLHTGKRPYTCPWCSRTFANGSNCRSH 138
L H HTG++P+ C C R FA + H
Sbjct: 50 LTTHIRTHTGEKPFACDICGRKFARSDERKRH 81
Score = 49.3 bits (116), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 35/58 (60%), Gaps = 1/58 (1%)
Query: 31 RFSSRSAVTAHTKAVHLGERPFVCHECGQSFASKGILQEHLTIHSDDAPWKCDICSKK 88
RFS + +T H + +H G++PF C C ++F+ L H+ H+ + P+ CDIC +K
Sbjct: 15 RFSRSAELTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRK 71
Score = 35.8 bits (81), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Query: 23 YSLALMVTRFSSRSAVTAHTKAVHLGERPFVCHECGQSFASKGILQEHLTIH 74
+ + + FS +T H + H GE+PF C CG+ FA + H IH
Sbjct: 35 FQCRICMRNFSRSDHLTTHIR-THTGEKPFACDICGRKFARSDERKRHTKIH 85
Score = 33.5 bits (75), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 23/45 (51%)
Query: 96 SCGWYPDESKDLKNHHNLHTGKRPYTCPWCSRTFANGSNCRSHKR 140
SC S +L H +HTG++P+ C C R F+ + +H R
Sbjct: 11 SCDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIR 55
>pdb|1AAY|A Chain A, Zif268 Zinc Finger-Dna Complex
pdb|1A1L|A Chain A, Zif268 Zinc Finger-Dna Complex (Gcac Site)
Length = 90
Score = 51.2 bits (121), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 41/92 (44%), Gaps = 14/92 (15%)
Query: 49 ERPFVC--HECGQSFASKGILQEHLTIHSDDAPWKCDICSKKSLKLSNVSCGWYPDESKD 106
ERP+ C C + F+ L H+ IH+ P++C IC + N S S
Sbjct: 2 ERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRIC------MRNFS------RSDH 49
Query: 107 LKNHHNLHTGKRPYTCPWCSRTFANGSNCRSH 138
L H HTG++P+ C C R FA + H
Sbjct: 50 LTTHIRTHTGEKPFACDICGRKFARSDERKRH 81
Score = 48.9 bits (115), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 34/58 (58%), Gaps = 1/58 (1%)
Query: 31 RFSSRSAVTAHTKAVHLGERPFVCHECGQSFASKGILQEHLTIHSDDAPWKCDICSKK 88
RFS +T H + +H G++PF C C ++F+ L H+ H+ + P+ CDIC +K
Sbjct: 15 RFSRSDELTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRK 71
Score = 36.2 bits (82), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Query: 23 YSLALMVTRFSSRSAVTAHTKAVHLGERPFVCHECGQSFASKGILQEHLTIH 74
+ + + FS +T H + H GE+PF C CG+ FA + H IH
Sbjct: 35 FQCRICMRNFSRSDHLTTHIR-THTGEKPFACDICGRKFARSDERKRHTKIH 85
Score = 33.5 bits (75), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 23/45 (51%)
Query: 96 SCGWYPDESKDLKNHHNLHTGKRPYTCPWCSRTFANGSNCRSHKR 140
SC S +L H +HTG++P+ C C R F+ + +H R
Sbjct: 11 SCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIR 55
>pdb|1A1F|A Chain A, Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc Site)
pdb|1A1G|A Chain A, Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gcgt Site)
Length = 90
Score = 51.2 bits (121), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 41/92 (44%), Gaps = 14/92 (15%)
Query: 49 ERPFVC--HECGQSFASKGILQEHLTIHSDDAPWKCDICSKKSLKLSNVSCGWYPDESKD 106
ERP+ C C + F+ L H+ IH+ P++C IC + N S S
Sbjct: 2 ERPYACPVESCDRRFSDSSNLTRHIRIHTGQKPFQCRIC------MRNFS------RSDH 49
Query: 107 LKNHHNLHTGKRPYTCPWCSRTFANGSNCRSH 138
L H HTG++P+ C C R FA + H
Sbjct: 50 LTTHIRTHTGEKPFACDICGRKFARSDERKRH 81
Score = 50.4 bits (119), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 35/58 (60%), Gaps = 1/58 (1%)
Query: 31 RFSSRSAVTAHTKAVHLGERPFVCHECGQSFASKGILQEHLTIHSDDAPWKCDICSKK 88
RFS S +T H + +H G++PF C C ++F+ L H+ H+ + P+ CDIC +K
Sbjct: 15 RFSDSSNLTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRK 71
Score = 36.2 bits (82), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Query: 23 YSLALMVTRFSSRSAVTAHTKAVHLGERPFVCHECGQSFASKGILQEHLTIH 74
+ + + FS +T H + H GE+PF C CG+ FA + H IH
Sbjct: 35 FQCRICMRNFSRSDHLTTHIR-THTGEKPFACDICGRKFARSDERKRHTKIH 85
Score = 33.9 bits (76), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 24/45 (53%)
Query: 96 SCGWYPDESKDLKNHHNLHTGKRPYTCPWCSRTFANGSNCRSHKR 140
SC +S +L H +HTG++P+ C C R F+ + +H R
Sbjct: 11 SCDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIR 55
>pdb|1P47|A Chain A, Crystal Structure Of Tandem Zif268 Molecules Complexed To
Dna
pdb|1P47|B Chain B, Crystal Structure Of Tandem Zif268 Molecules Complexed To
Dna
Length = 87
Score = 50.8 bits (120), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 41/92 (44%), Gaps = 14/92 (15%)
Query: 49 ERPFVC--HECGQSFASKGILQEHLTIHSDDAPWKCDICSKKSLKLSNVSCGWYPDESKD 106
ERP+ C C + F+ L H+ IH+ P++C IC + N S S
Sbjct: 1 ERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRIC------MRNFS------RSDH 48
Query: 107 LKNHHNLHTGKRPYTCPWCSRTFANGSNCRSH 138
L H HTG++P+ C C R FA + H
Sbjct: 49 LTTHIRTHTGEKPFACDICGRKFARSDERKRH 80
Score = 48.9 bits (115), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 34/58 (58%), Gaps = 1/58 (1%)
Query: 31 RFSSRSAVTAHTKAVHLGERPFVCHECGQSFASKGILQEHLTIHSDDAPWKCDICSKK 88
RFS +T H + +H G++PF C C ++F+ L H+ H+ + P+ CDIC +K
Sbjct: 14 RFSRSDELTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRK 70
Score = 35.8 bits (81), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Query: 23 YSLALMVTRFSSRSAVTAHTKAVHLGERPFVCHECGQSFASKGILQEHLTIH 74
+ + + FS +T H + H GE+PF C CG+ FA + H IH
Sbjct: 34 FQCRICMRNFSRSDHLTTHIR-THTGEKPFACDICGRKFARSDERKRHTKIH 84
Score = 33.5 bits (75), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 23/45 (51%)
Query: 96 SCGWYPDESKDLKNHHNLHTGKRPYTCPWCSRTFANGSNCRSHKR 140
SC S +L H +HTG++P+ C C R F+ + +H R
Sbjct: 10 SCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIR 54
>pdb|1ZAA|C Chain C, Zinc Finger-Dna Recognition: Crystal Structure Of A
Zif268- Dna Complex At 2.1 Angstroms
Length = 87
Score = 50.4 bits (119), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 41/92 (44%), Gaps = 14/92 (15%)
Query: 49 ERPFVC--HECGQSFASKGILQEHLTIHSDDAPWKCDICSKKSLKLSNVSCGWYPDESKD 106
ERP+ C C + F+ L H+ IH+ P++C IC + N S S
Sbjct: 2 ERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRIC------MRNFS------RSDH 49
Query: 107 LKNHHNLHTGKRPYTCPWCSRTFANGSNCRSH 138
L H HTG++P+ C C R FA + H
Sbjct: 50 LTTHIRTHTGEKPFACDICGRKFARSDERKRH 81
Score = 48.5 bits (114), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 34/58 (58%), Gaps = 1/58 (1%)
Query: 31 RFSSRSAVTAHTKAVHLGERPFVCHECGQSFASKGILQEHLTIHSDDAPWKCDICSKK 88
RFS +T H + +H G++PF C C ++F+ L H+ H+ + P+ CDIC +K
Sbjct: 15 RFSRSDELTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRK 71
Score = 35.8 bits (81), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Query: 23 YSLALMVTRFSSRSAVTAHTKAVHLGERPFVCHECGQSFASKGILQEHLTIH 74
+ + + FS +T H + H GE+PF C CG+ FA + H IH
Sbjct: 35 FQCRICMRNFSRSDHLTTHIR-THTGEKPFACDICGRKFARSDERKRHTKIH 85
Score = 33.1 bits (74), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 23/45 (51%)
Query: 96 SCGWYPDESKDLKNHHNLHTGKRPYTCPWCSRTFANGSNCRSHKR 140
SC S +L H +HTG++P+ C C R F+ + +H R
Sbjct: 11 SCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIR 55
>pdb|2GLI|A Chain A, Five-Finger GliDNA COMPLEX
Length = 155
Score = 50.4 bits (119), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 41/126 (32%), Positives = 59/126 (46%), Gaps = 23/126 (18%)
Query: 32 FSSRSAVTAHTKAVHL-GER-PFVCHECG-----QSFASKGILQEHLTIHSDDAPWKCDI 84
F S+ + H + H+ GER FVCH G + F ++ +L H+ H+ + P KC
Sbjct: 13 FDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRRHTGEKPHKCTF 72
Query: 85 --CSKKSLKLSNVSCGWYPDESKDLKNHHNLHTGKRPYTC--PWCSRTFANGSNCRSHKR 140
C K +L N LK H HTG++PY C CS+ F+N S+ H+
Sbjct: 73 EGCRKSYSRLEN------------LKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQN 120
Query: 141 RMHPEE 146
R H E
Sbjct: 121 RTHSNE 126
Score = 40.8 bits (94), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 57/119 (47%), Gaps = 20/119 (16%)
Query: 32 FSSRSAVTAHTKAVHLGERPFVC--HECGQSFASKGILQEHLTIHSDDAPWKCDI--CSK 87
F ++ + H + H GE+P C C +S++ L+ HL H+ + P+ C+ CSK
Sbjct: 49 FKAQYMLVVHMRR-HTGEKPHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSK 107
Query: 88 KSLKLSNVSCGWYPDESKDLKNHHN-LHTGKRPYTC--PWCSRTFANGSNCRSHKRRMH 143
SN S D H N H+ ++PY C P C++ + + S+ R H + +H
Sbjct: 108 A---FSNAS---------DRAKHQNRTHSNEKPYVCKLPGCTKRYTDPSSLRKHVKTVH 154
>pdb|1G2D|C Chain C, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX (CLONE
#2)
pdb|1G2D|F Chain F, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX (CLONE
#2)
Length = 90
Score = 50.4 bits (119), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 40/84 (47%), Gaps = 14/84 (16%)
Query: 49 ERPFVC--HECGQSFASKGILQEHLTIHSDDAPWKCDICSKKSLKLSNVSCGWYPDESKD 106
ERP+ C C + F+ K L H+ IH+ P++C IC + N S +
Sbjct: 2 ERPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRIC------MRNFS------QHTG 49
Query: 107 LKNHHNLHTGKRPYTCPWCSRTFA 130
L H HTG++P+ C C R FA
Sbjct: 50 LNQHIRTHTGEKPFACDICGRKFA 73
Score = 50.4 bits (119), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 37/62 (59%), Gaps = 1/62 (1%)
Query: 31 RFSSRSAVTAHTKAVHLGERPFVCHECGQSFASKGILQEHLTIHSDDAPWKCDICSKKSL 90
RFS ++ + H + +H G++PF C C ++F+ L +H+ H+ + P+ CDIC +K
Sbjct: 15 RFSQKTNLDTHIR-IHTGQKPFQCRICMRNFSQHTGLNQHIRTHTGEKPFACDICGRKFA 73
Query: 91 KL 92
L
Sbjct: 74 TL 75
Score = 35.4 bits (80), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Query: 23 YSLALMVTRFSSRSAVTAHTKAVHLGERPFVCHECGQSFASKGILQEHLTIH 74
+ + + FS + + H + H GE+PF C CG+ FA+ H IH
Sbjct: 35 FQCRICMRNFSQHTGLNQHIR-THTGEKPFACDICGRKFATLHTRDRHTKIH 85
Score = 32.3 bits (72), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 22/45 (48%)
Query: 96 SCGWYPDESKDLKNHHNLHTGKRPYTCPWCSRTFANGSNCRSHKR 140
SC + +L H +HTG++P+ C C R F+ + H R
Sbjct: 11 SCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIR 55
>pdb|2WBS|A Chain A, Crystal Structure Of The Zinc Finger Domain Of Klf4 Bound
To Its Target Dna
Length = 89
Score = 50.4 bits (119), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 39/85 (45%), Gaps = 10/85 (11%)
Query: 57 CGQSFASKGILQEHLTIHSDDAPWKCDICSKKSLKLSNVSCGWYPDESKDLKNHHNLHTG 116
CG+++ L+ HL H+ + P+ CD CGW S +L H+ HTG
Sbjct: 13 CGKTYTKSSHLKAHLRTHTGEKPYHCDW----------DGCGWKFARSDELTRHYRKHTG 62
Query: 117 KRPYTCPWCSRTFANGSNCRSHKRR 141
RP+ C C R F+ + H +R
Sbjct: 63 HRPFQCQKCDRAFSRSDHLALHMKR 87
Score = 29.6 bits (65), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Query: 31 RFSSRSAVTAHTKAVHLGERPFVCHECGQSFASKGILQEHLTIH 74
+F+ +T H + H G RPF C +C ++F+ L H+ H
Sbjct: 46 KFARSDELTRHYRK-HTGHRPFQCQKCDRAFSRSDHLALHMKRH 88
>pdb|2WBU|A Chain A, Crystal Structure Of The Zinc Finger Domain Of Klf4 Bound
To Its Target Dna
Length = 90
Score = 50.4 bits (119), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 39/85 (45%), Gaps = 10/85 (11%)
Query: 57 CGQSFASKGILQEHLTIHSDDAPWKCDICSKKSLKLSNVSCGWYPDESKDLKNHHNLHTG 116
CG+++ L+ HL H+ + P+ CD CGW S +L H+ HTG
Sbjct: 14 CGKTYTKSSHLKAHLRTHTGEKPYHCDW----------DGCGWKFARSDELTRHYRKHTG 63
Query: 117 KRPYTCPWCSRTFANGSNCRSHKRR 141
RP+ C C R F+ + H +R
Sbjct: 64 HRPFQCQKCDRAFSRSDHLALHMKR 88
Score = 29.3 bits (64), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Query: 31 RFSSRSAVTAHTKAVHLGERPFVCHECGQSFASKGILQEHLTIH 74
+F+ +T H + H G RPF C +C ++F+ L H+ H
Sbjct: 47 KFARSDELTRHYRK-HTGHRPFQCQKCDRAFSRSDHLALHMKRH 89
>pdb|2RPC|A Chain A, Solution Structure Of The Tandem Zf-C2h2 Domains From The
Human Zinc Finger Protein Zic 3
Length = 155
Score = 49.3 bits (116), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 56/117 (47%), Gaps = 20/117 (17%)
Query: 32 FSSRSAVTAHTKAVHLG---ERPFVCH--EC---GQSFASKGILQEHLTIHSDDAPWKCD 83
FS+ + H H+G + VC+ EC G+SF +K L H+ +H+ + P+ C
Sbjct: 35 FSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTGEKPFPCP 94
Query: 84 ICSKKSLKLSNVSCGWYPDESKDLKNHHNLHTGKRPYTCPW--CSRTFANGSNCRSH 138
CG S++LK H HTG++P+ C + C R FAN S+ + H
Sbjct: 95 F----------PGCGKIFARSENLKIHKRTHTGEKPFKCEFEGCDRRFANSSDRKKH 141
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 43/94 (45%), Gaps = 21/94 (22%)
Query: 57 CGQSFASKGILQEHLTIHSDDAPWKCDICSKKSLKLSNVSCGWY--PDESKDLK------ 108
C ++F++ L H+T+ P + +N C W P E K K
Sbjct: 31 CDRTFSTMHELVTHVTMEHVGGP-----------EQNNHVCYWEECPREGKSFKAKYKLV 79
Query: 109 NHHNLHTGKRPYTCPW--CSRTFANGSNCRSHKR 140
NH +HTG++P+ CP+ C + FA N + HKR
Sbjct: 80 NHIRVHTGEKPFPCPFPGCGKIFARSENLKIHKR 113
Score = 29.3 bits (64), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Query: 43 KAVHLGERPFVCH--ECGQSFASKGILQEHLTIHSDD 77
K H GE+PF C C + FA+ ++H+ +H+ D
Sbjct: 112 KRTHTGEKPFKCEFEGCDRRFANSSDRKKHMHVHTSD 148
>pdb|2JP9|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
pdb|2JPA|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
pdb|2PRT|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
Length = 119
Score = 48.1 bits (113), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 50/108 (46%), Gaps = 17/108 (15%)
Query: 31 RFSSRSAVTAHTKAVHLGERPFVCH--ECGQSFASKGILQEHLTIHSDDAPWKCDICSKK 88
R+ S + H++ H GE+P+ C +C + F+ L+ H H+ P++C C +K
Sbjct: 17 RYFKLSHLQMHSRK-HTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQCKTCQRK 75
Query: 89 SLKLSNVSCGWYPDESKDLKNHHNLHTGKRPYTCPW--CSRTFANGSN 134
+ S LK H HTG++P++C W C + FA
Sbjct: 76 FSR------------SDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDE 111
Score = 45.4 bits (106), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 41/94 (43%), Gaps = 12/94 (12%)
Query: 49 ERPFVCHE--CGQSFASKGILQEHLTIHSDDAPWKCDICSKKSLKLSNVSCGWYPDESKD 106
+RPF+C C + + LQ H H+ + P++CD C S
Sbjct: 4 KRPFMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDF----------KDCERRFSRSDQ 53
Query: 107 LKNHHNLHTGKRPYTCPWCSRTFANGSNCRSHKR 140
LK H HTG +P+ C C R F+ + ++H R
Sbjct: 54 LKRHQRRHTGVKPFQCKTCQRKFSRSDHLKTHTR 87
Score = 37.4 bits (85), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 37/86 (43%), Gaps = 15/86 (17%)
Query: 31 RFSSRSAVTAHTKAVHLGERPFVCHECGQSFASKGILQEHLTIHSDDAPWKC--DICSKK 88
RFS + H + H G +PF C C + F+ L+ H H+ + P+ C C KK
Sbjct: 47 RFSRSDQLKRHQRR-HTGVKPFQCKTCQRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKK 105
Query: 89 SLKLSNVSCGWYPDESKDLKNHHNLH 114
+ S +L HHN+H
Sbjct: 106 FAR------------SDELVRHHNMH 119
>pdb|2LCE|A Chain A, Chemical Shift Assignment Of Hr4436b From Homo Sapiens,
Northeast Structural Genomics Consortium
Length = 74
Score = 48.1 bits (113), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 38/71 (53%), Gaps = 12/71 (16%)
Query: 49 ERPFVCHECGQSFASKGILQEHLTIHSDDAPWKCDICSKKSLKLSNVSCGWYPDESKDLK 108
++P+ C C SF KG L H T+H+ + P++C+IC + + +N LK
Sbjct: 15 DKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPAN------------LK 62
Query: 109 NHHNLHTGKRP 119
H +H+G++P
Sbjct: 63 THTRIHSGEKP 73
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Query: 32 FSSRSAVTAHTKAVHLGERPFVCHECGQSFASKGILQEHLTIHSDDAP 79
F + + +H K VH GE+P+ C+ CG F L+ H IHS + P
Sbjct: 27 FRYKGNLASH-KTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGEKP 73
Score = 37.0 bits (84), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 31/64 (48%), Gaps = 12/64 (18%)
Query: 77 DAPWKCDICSKKSLKLSNVSCGWYPDESKDLKNHHNLHTGKRPYTCPWCSRTFANGSNCR 136
D P+KCD C + S + +L +H +HTG++PY C C F +N +
Sbjct: 15 DKPYKCDRC-QASFRYKG-----------NLASHKTVHTGEKPYRCNICGAQFNRPANLK 62
Query: 137 SHKR 140
+H R
Sbjct: 63 THTR 66
>pdb|2DLQ|A Chain A, Solution Structure Of The Tandem Four Zf-C2h2 Domain
Repeats Of Murine Gli-Kruppel Family Member Hkr3
Length = 124
Score = 47.4 bits (111), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 54/116 (46%), Gaps = 16/116 (13%)
Query: 31 RFSSRSAVTAHTKAVHLGERPFVCHECGQSFASKGILQEHLT---IHSDDAPWKCDICSK 87
+F S+ + H + H GE+PF C +CG+ + K L EH ++ + + C +C +
Sbjct: 16 KFLSKYYLKVHNRK-HTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQVFTCSVCQE 74
Query: 88 KSLKLSNVSCGWYPDESKDLKNHHNLHTGKRPYTCPWCSRTFANGSNCRSHKRRMH 143
+ +L+ H HTG+ PY C CS+ F + +SH ++H
Sbjct: 75 TFRR------------RMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLH 118
Score = 36.2 bits (82), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 36/69 (52%), Gaps = 13/69 (18%)
Query: 49 ERPFVCHECGQSFASKGILQEHLTIHSDDAPWKCDICSKKSLKLSNVSCGWYPDESKDLK 108
E+ F C C ++F + L+ H+ H+ + P+KC CS++ + + KDL+
Sbjct: 64 EQVFTCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFM------------QKKDLQ 111
Query: 109 NHH-NLHTG 116
+H LH+G
Sbjct: 112 SHMIKLHSG 120
>pdb|2EE8|A Chain A, Solution Structure Of Three Zf-C2h2 Domains From Mouse
Protein Odd-Skipped-Related 2 Splicing Isoform 2
Length = 106
Score = 46.2 bits (108), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 41/91 (45%), Gaps = 12/91 (13%)
Query: 49 ERPFVCHECGQSFASKGILQEHLTIHSDDAPWKCDICSKKSLKLSNVSCGWYPDESKDLK 108
++ F+C CG+ F L H H+D+ P+ CDIC K + + L+
Sbjct: 15 KKEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDH------------LR 62
Query: 109 NHHNLHTGKRPYTCPWCSRTFANGSNCRSHK 139
+H +H+ ++P+ C C + F HK
Sbjct: 63 DHRYIHSKEKPFKCQECGKGFCQSRTLAVHK 93
Score = 41.6 bits (96), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 25/43 (58%)
Query: 45 VHLGERPFVCHECGQSFASKGILQEHLTIHSDDAPWKCDICSK 87
H ERP+ C C ++F + L++H IHS + P+KC C K
Sbjct: 39 THTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQECGK 81
Score = 37.4 bits (85), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 32/70 (45%), Gaps = 1/70 (1%)
Query: 97 CGWYPDESKDLKNHHNLHTGKRPYTCPWCSRTFANGSNCRSHKRRMHPEELKLYESSLGK 156
CG + +S +L H HT +RPYTC C + F + R H R +H +E GK
Sbjct: 23 CGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDH-RYIHSKEKPFKCQECGK 81
Query: 157 IFLYGKMKNV 166
F + V
Sbjct: 82 GFCQSRTLAV 91
Score = 33.1 bits (74), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 45 VHLGERPFVCHECGQSFASKGILQEHLTIH 74
+H E+PF C ECG+ F L H T+H
Sbjct: 67 IHSKEKPFKCQECGKGFCQSRTLAVHKTLH 96
>pdb|2COT|A Chain A, Solution Structure Of The First And Second Zf-C2h2 Domain
Of Zinc Finger Protein 435
Length = 77
Score = 45.8 bits (107), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 35/70 (50%), Gaps = 12/70 (17%)
Query: 50 RPFVCHECGQSFASKGILQEHLTIHSDDAPWKCDICSKKSLKLSNVSCGWYPDESKDLKN 109
R + C ECG+SF+ L +H H+ + P+KCD C K ++ S+ L
Sbjct: 17 RRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSH------------LIG 64
Query: 110 HHNLHTGKRP 119
HH +HTG P
Sbjct: 65 HHRVHTGSGP 74
Score = 37.4 bits (85), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Query: 32 FSSRSAVTAHTKAVHLGERPFVCHECGQSFASKGILQEHLTIHSDDAP 79
FS S ++ H + H GE+P+ C ECG++F + L H +H+ P
Sbjct: 28 FSHSSDLSKHRR-THTGEKPYKCDECGKAFIQRSHLIGHHRVHTGSGP 74
Score = 34.3 bits (77), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 21/44 (47%)
Query: 97 CGWYPDESKDLKNHHNLHTGKRPYTCPWCSRTFANGSNCRSHKR 140
CG S DL H HTG++PY C C + F S+ H R
Sbjct: 24 CGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHR 67
>pdb|2CSH|A Chain A, Solution Structure Of Tandem Repeat Of The Zf-C2h2
Domains Of Human Zinc Finger Protein 297b
Length = 110
Score = 45.8 bits (107), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 31/47 (65%)
Query: 44 AVHLGERPFVCHECGQSFASKGILQEHLTIHSDDAPWKCDICSKKSL 90
++HLG RP+ C CG+ F K L H+ IH+ P++C+IC+K+ +
Sbjct: 30 SMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNICAKRFM 76
Score = 44.7 bits (104), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 41/82 (50%), Gaps = 13/82 (15%)
Query: 48 GERPFVCHECGQSFASKGILQEHLTIHSDDAPWKCDICSKKSLKLSNVSCGWYPDESKDL 107
G++ + C +CG+SF K H+++H P+ C +C KK K+ + L
Sbjct: 7 GDKLYPC-QCGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKK-FKMKH-----------HL 53
Query: 108 KNHHNLHTGKRPYTCPWCSRTF 129
H +HTG +PY C C++ F
Sbjct: 54 VGHMKIHTGIKPYECNICAKRF 75
Score = 26.6 bits (57), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 13/53 (24%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Query: 20 LGKYSLALMVTRFSSRSAVTAHTKAVHLGERPFVCHECGQSFASKGILQEHLT 72
L Y + +F + + H K +H G +P+ C+ C + F + H+T
Sbjct: 35 LRPYGCGVCGKKFKMKHHLVGHMK-IHTGIKPYECNICAKRFMWRDSFHRHVT 86
>pdb|1X6E|A Chain A, Solution Structures Of The C2h2 Type Zinc Finger Domain Of
Human Zinc Finger Protein 24
Length = 72
Score = 45.4 bits (106), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 35/67 (52%), Gaps = 12/67 (17%)
Query: 49 ERPFVCHECGQSFASKGILQEHLTIHSDDAPWKCDICSKKSLKLSNVSCGWYPDESKDLK 108
E+P+ C ECG++F+ IL +H +H+ + P+KC + CG ++ L
Sbjct: 12 EKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKC------------LECGKAFSQNSGLI 59
Query: 109 NHHNLHT 115
NH +HT
Sbjct: 60 NHQRIHT 66
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 26/43 (60%)
Query: 34 SRSAVTAHTKAVHLGERPFVCHECGQSFASKGILQEHLTIHSD 76
SRS++ + VH GE+P+ C ECG++F+ L H IH+
Sbjct: 25 SRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIHTS 67
Score = 37.7 bits (86), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 24/46 (52%)
Query: 95 VSCGWYPDESKDLKNHHNLHTGKRPYTCPWCSRTFANGSNCRSHKR 140
V CG S L H +HTG++PY C C + F+ S +H+R
Sbjct: 18 VECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQR 63
>pdb|2DMD|A Chain A, Solution Structure Of The N-Terminal C2h2 Type
Zinc-Binding Domain Of The Zinc Finger Protein 64,
Isoforms 1 And 2
Length = 96
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
Query: 32 FSSRSAVTAHTKAVHLGERPFVCHECGQSFASKGILQEHLTIHSDDAPWKCDICSKKSLK 91
FS + + H + H G +P+ C C + A L +HL IHSD+ P+KC IC S
Sbjct: 18 FSRKDKLKTHMR-CHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQICPYASRN 76
Query: 92 LSNVS 96
S ++
Sbjct: 77 SSQLT 81
Score = 43.1 bits (100), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 37/90 (41%), Gaps = 12/90 (13%)
Query: 51 PFVCHECGQSFASKGILQEHLTIHSDDAPWKCDICSKKSLKLSNVSCGWYPDESKDLKNH 110
P C CG+ F+ K L+ H+ H+ P+KC C + +S L H
Sbjct: 8 PHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCD------------YAAADSSSLNKH 55
Query: 111 HNLHTGKRPYTCPWCSRTFANGSNCRSHKR 140
+H+ +RP+ C C N S H R
Sbjct: 56 LRIHSDERPFKCQICPYASRNSSQLTVHLR 85
Score = 32.7 bits (73), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 31/69 (44%), Gaps = 13/69 (18%)
Query: 78 APWKCDICSKKSLKLSNVSCGWYPDESKDLKNHHNLHTGKRPYTCPWCSRTFANGSNCRS 137
P KC++C K C D+ LK H HTG +PY C C A+ S+
Sbjct: 7 GPHKCEVCGK---------CFSRKDK---LKTHMRCHTGVKPYKCKTCDYAAADSSSLNK 54
Query: 138 HKRRMHPEE 146
H R+H +E
Sbjct: 55 H-LRIHSDE 62
Score = 26.2 bits (56), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 17/34 (50%)
Query: 45 VHLGERPFVCHECGQSFASKGILQEHLTIHSDDA 78
+H ERPF C C + + L HL H+ D+
Sbjct: 58 IHSDERPFKCQICPYASRNSSQLTVHLRSHTGDS 91
>pdb|2EBT|A Chain A, Solution Structure Of Three Tandem Repeats Of Zf-C2h2
Domains From Human Kruppel-Like Factor 5
Length = 100
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 39/85 (45%), Gaps = 10/85 (11%)
Query: 57 CGQSFASKGILQEHLTIHSDDAPWKCDICSKKSLKLSNVSCGWYPDESKDLKNHHNLHTG 116
C + + L+ HL H+ + P+KC + C W S +L H+ HTG
Sbjct: 23 CTKVYTKSSHLKAHLRTHTGEKPYKC----------TWEGCDWRFARSDELTRHYRKHTG 72
Query: 117 KRPYTCPWCSRTFANGSNCRSHKRR 141
+P+ C C+R+F+ + H +R
Sbjct: 73 AKPFQCGVCNRSFSRSDHLALHMKR 97
Score = 29.3 bits (64), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Query: 31 RFSSRSAVTAHTKAVHLGERPFVCHECGQSFASKGILQEHLTIHSD 76
RF+ +T H + H G +PF C C +SF+ L H+ H +
Sbjct: 56 RFARSDELTRHYRK-HTGAKPFQCGVCNRSFSRSDHLALHMKRHQN 100
>pdb|2DLK|A Chain A, Solution Structure Of The First And The Second Zf-C2h2
Domains Of Zinc Finger Protein 692
Length = 79
Score = 41.2 bits (95), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 32/55 (58%), Gaps = 2/55 (3%)
Query: 32 FSSRSAVTAHTKAVHLGERPFVCHE--CGQSFASKGILQEHLTIHSDDAPWKCDI 84
FS+R + H K H+ ++ F C E CG+SF K L+EH+ +HSD + C+
Sbjct: 19 FSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKLHSDTRDYICEF 73
>pdb|2LT7|A Chain A, Solution Nmr Structure Of Kaiso Zinc Finger Dna Binding
Domain In Complex With Kaiso Binding Site Dna
pdb|4F6M|A Chain A, Crystal Structure Of Kaiso Zinc Finger Dna Binding Domain
In Complex With Kaiso Binding Site Dna
pdb|4F6N|A Chain A, Crystal Structure Of Kaiso Zinc Finger Dna Binding Protein
In Complex With Methylated Cpg Site Dna
Length = 133
Score = 40.0 bits (92), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 45/106 (42%), Gaps = 12/106 (11%)
Query: 41 HTKAVHLGERPFVCHECGQSFASKGILQEHLTIHSDDAPWKCDICSKKSLKLSNVSCGWY 100
H + + G ++C C +S+ L+ H IHS + + C C K +
Sbjct: 12 HYELIVDGRVYYICIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEK-----------VF 60
Query: 101 PDESKDLKNHHNLHTGKRPYTCPWCSRTFANGSNCRSHKRRMHPEE 146
P K H HTG+R Y C C ++F N SH + +H ++
Sbjct: 61 PLAEYRTK-HEIHHTGERRYQCLACGKSFINYQFMSSHIKSVHSQD 105
>pdb|2YTA|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 3 In
Zinc Finger Protein 32
Length = 41
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 21/32 (65%)
Query: 48 GERPFVCHECGQSFASKGILQEHLTIHSDDAP 79
GE+P+ C ECG+SF+ +G L H +H+ P
Sbjct: 7 GEKPYQCKECGKSFSQRGSLAVHERLHTGSGP 38
>pdb|2YTS|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
715- 747) Of Human Zinc Finger Protein 484
Length = 46
Score = 37.7 bits (86), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 21/31 (67%)
Query: 49 ERPFVCHECGQSFASKGILQEHLTIHSDDAP 79
E+P++C+ECG+SF K L H IH+ + P
Sbjct: 10 EKPYICNECGKSFIQKSHLNRHRRIHTGEKP 40
>pdb|1LLM|C Chain C, Crystal Structure Of A Zif23-Gcn4 Chimera Bound To Dna
pdb|1LLM|D Chain D, Crystal Structure Of A Zif23-Gcn4 Chimera Bound To Dna
Length = 88
Score = 37.7 bits (86), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 23/39 (58%)
Query: 50 RPFVCHECGQSFASKGILQEHLTIHSDDAPWKCDICSKK 88
+PF C C ++F+ L H+ H+ + P+ CDIC +K
Sbjct: 2 KPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRK 40
Score = 35.4 bits (80), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 28/65 (43%), Gaps = 12/65 (18%)
Query: 79 PWKCDICSKKSLKLSNVSCGWYPDESKDLKNHHNLHTGKRPYTCPWCSRTFANGSNCRSH 138
P++C IC + N S S L H HTG++P+ C C R FA + H
Sbjct: 3 PFQCRIC------MRNFS------RSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRH 50
Query: 139 KRRMH 143
+ H
Sbjct: 51 RDIQH 55
Score = 33.1 bits (74), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Query: 32 FSSRSAVTAHTKAVHLGERPFVCHECGQSFASKGILQEHLTI 73
FS +T H + H GE+PF C CG+ FA + H I
Sbjct: 13 FSRSDHLTTHIRT-HTGEKPFACDICGRKFARSDERKRHRDI 53
>pdb|2YRJ|A Chain A, Solution Structure Of The C2h2-Type Zinc Finger Domain
(781- 813) From Zinc Finger Protein 473
Length = 46
Score = 37.0 bits (84), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 21/31 (67%)
Query: 49 ERPFVCHECGQSFASKGILQEHLTIHSDDAP 79
E+P+ C ECG++FA K L +H IH+ + P
Sbjct: 10 EKPYRCGECGKAFAQKANLTQHQRIHTGEKP 40
>pdb|2YRH|A Chain A, Solution Structure Of The C2h2-Type Zinc Finger Domain
(699- 729) From Zinc Finger Protein 473
Length = 44
Score = 37.0 bits (84), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 21/32 (65%)
Query: 48 GERPFVCHECGQSFASKGILQEHLTIHSDDAP 79
G++P VC+ECG++F L +H IHS + P
Sbjct: 7 GKKPLVCNECGKTFRQSSCLSKHQRIHSGEKP 38
Score = 26.6 bits (57), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Query: 115 TGKRPYTCPWCSRTFANGSNCRSHKRRMHPEE 146
+GK+P C C +TF S+C S +R+H E
Sbjct: 6 SGKKPLVCNECGKTFRQ-SSCLSKHQRIHSGE 36
>pdb|2EN6|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
887- 919) Of Human Zinc Finger Protein 268
Length = 46
Score = 36.6 bits (83), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 21/31 (67%)
Query: 49 ERPFVCHECGQSFASKGILQEHLTIHSDDAP 79
E+P+ C+ECG++F+ K IL H H+ + P
Sbjct: 10 EKPYGCNECGKTFSQKSILSAHQRTHTGEKP 40
>pdb|2EOR|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
255- 287) Of Human Zinc Finger Protein 224
Length = 46
Score = 35.8 bits (81), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 20/31 (64%)
Query: 49 ERPFVCHECGQSFASKGILQEHLTIHSDDAP 79
E+P+ C ECG++F LQEH IH+ + P
Sbjct: 10 EKPYNCEECGKAFIHDSQLQEHQRIHTGEKP 40
>pdb|2YTQ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
775- 807) Of Human Zinc Finger Protein 268
Length = 46
Score = 35.8 bits (81), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 21/31 (67%)
Query: 49 ERPFVCHECGQSFASKGILQEHLTIHSDDAP 79
E+P+ C ECG++F+SK L H+ HS + P
Sbjct: 10 EKPYGCSECGKAFSSKSYLIIHMRTHSGEKP 40
>pdb|2YTB|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 5 In
Zinc Finger Protein 32
Length = 42
Score = 35.8 bits (81), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 21/31 (67%)
Query: 49 ERPFVCHECGQSFASKGILQEHLTIHSDDAP 79
E+P+ C +CG++F+ KG L H+ +H+ P
Sbjct: 9 EKPYRCDQCGKAFSQKGSLIVHIRVHTGSGP 39
>pdb|2EPT|A Chain A, Solution Structure Of The First C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 32
Length = 41
Score = 35.4 bits (80), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 19/32 (59%)
Query: 48 GERPFVCHECGQSFASKGILQEHLTIHSDDAP 79
G+R + C ECG+SF KG L H IH+ P
Sbjct: 7 GQRVYECQECGKSFRQKGSLTLHERIHTGSGP 38
>pdb|4GZN|C Chain C, Mouse Zfp57 Zinc Fingers In Complex With Methylated Dna
Length = 60
Score = 35.4 bits (80), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Query: 36 SAVTAHTKAVHLGERPFVCHECGQSFASKGILQEHLTIHSD 76
S ++ H +A HLG RP C ECG+ F + + HL +H +
Sbjct: 18 SGLSRHRRA-HLGYRPRSCPECGKCFRDQSEVNRHLKVHQN 57
Score = 30.8 bits (68), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 18/39 (46%)
Query: 49 ERPFVCHECGQSFASKGILQEHLTIHSDDAPWKCDICSK 87
ERPF C+ CG+++ L H H P C C K
Sbjct: 2 ERPFFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGK 40
Score = 30.0 bits (66), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 19/42 (45%)
Query: 97 CGWYPDESKDLKNHHNLHTGKRPYTCPWCSRTFANGSNCRSH 138
CG ++ L H H G RP +CP C + F + S H
Sbjct: 10 CGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRH 51
>pdb|2EPA|A Chain A, Solution Structure Of The First And Second Zf-C2h2 Domains
From Human Krueppel-Like Factor 10
Length = 72
Score = 35.4 bits (80), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Query: 93 SNVSCGWYPDESKDLKNHHNLHTGKRPYTCPW--CSRTFANGSNCRSHKR 140
S+ CG +S LK H HTG++P++C W C R FA H+R
Sbjct: 21 SHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRR 70
>pdb|2EMZ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
628- 660) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 35.0 bits (79), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 19/29 (65%)
Query: 49 ERPFVCHECGQSFASKGILQEHLTIHSDD 77
ERPF C+ECG+ F + L HL +HS +
Sbjct: 10 ERPFKCNECGKGFGRRSHLAGHLRLHSRE 38
>pdb|1TF6|A Chain A, Co-crystal Structure Of Xenopus Tfiiia Zinc Finger Domain
Bound To The 5s Ribosomal Rna Gene Internal Control
Region
pdb|1TF6|D Chain D, Co-crystal Structure Of Xenopus Tfiiia Zinc Finger Domain
Bound To The 5s Ribosomal Rna Gene Internal Control
Region
Length = 190
Score = 35.0 bits (79), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 50/121 (41%), Gaps = 26/121 (21%)
Query: 46 HLGERPFVCHE--CGQSFASKGILQEHLTIHSDDAPWKCD-------ICSKKSLK----- 91
H GE+PF C E C + F S L H H+ + + CD +K ++K
Sbjct: 37 HTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSDGCDLRFTTKANMKKHFNR 96
Query: 92 LSNV----------SCGWYPDESKDLKNHHNLHTGKRPYTCP--WCSRTFANGSNCRSHK 139
N+ +CG + LK H HT + PY CP C + F+ S + H+
Sbjct: 97 FHNIKICVYVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHE 156
Query: 140 R 140
+
Sbjct: 157 K 157
Score = 33.5 bits (75), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 50/114 (43%), Gaps = 18/114 (15%)
Query: 43 KAVHLGERPFVCH--ECGQSFASKGILQEHLTIHSDDAPWKC--DICSKKSLKLSNVSCG 98
KA+ + + ++C +CG ++ LQ HL H+ + P+ C + C K L +
Sbjct: 4 KALPVVYKRYICSFADCGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHH---- 59
Query: 99 WYPDESKDLKNHHNLHTGKRPYTC--PWCSRTFANGSNCRSHKRRMHPEELKLY 150
L H HTG++ +TC C F +N + H R H ++ +Y
Sbjct: 60 --------LTRHSLTHTGEKNFTCDSDGCDLRFTTKANMKKHFNRFHNIKICVY 105
>pdb|2EMW|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
301- 331) Of Human Zinc Finger Protein 268
Length = 44
Score = 35.0 bits (79), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 21/30 (70%)
Query: 48 GERPFVCHECGQSFASKGILQEHLTIHSDD 77
GE+P+ C+ECG+ F+SK L H IH+ +
Sbjct: 7 GEKPYGCNECGKDFSSKSYLIVHQRIHTGE 36
>pdb|2ADR|A Chain A, Adr1 Dna-Binding Domain From Saccharomyces Cerevisiae,
Nmr, 25 Structures
Length = 60
Score = 35.0 bits (79), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 23/36 (63%)
Query: 52 FVCHECGQSFASKGILQEHLTIHSDDAPWKCDICSK 87
FVC C ++FA + L+ H H+++ P+ C +C++
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNR 38
Score = 30.8 bits (68), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 21/41 (51%)
Query: 107 LKNHHNLHTGKRPYTCPWCSRTFANGSNCRSHKRRMHPEEL 147
LK H+ HT ++PY C C+R F H +++H L
Sbjct: 18 LKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSGNL 58
>pdb|2YSV|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 17 In
Zinc Finger Protein 473
Length = 42
Score = 34.7 bits (78), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 20/31 (64%)
Query: 48 GERPFVCHECGQSFASKGILQEHLTIHSDDA 78
GE+P+VC ECG++F L H +H+ ++
Sbjct: 7 GEKPYVCQECGKAFTQSSCLSIHRRVHTGES 37
Score = 28.5 bits (62), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Query: 115 TGKRPYTCPWCSRTFANGSNCRSHKRRMHPEE 146
+G++PY C C + F S+C S RR+H E
Sbjct: 6 SGEKPYVCQECGKAFTQ-SSCLSIHRRVHTGE 36
>pdb|1SRK|A Chain A, Solution Structure Of The Third Zinc Finger Domain Of
Fog-1
Length = 35
Score = 34.3 bits (77), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 48 GERPFVCHECGQSFASKGILQEHLTIHSD 76
G+RPFVC C +F +K HL +H+D
Sbjct: 4 GKRPFVCRICLSAFTTKANCARHLKVHTD 32
Score = 28.1 bits (61), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Query: 115 TGKRPYTCPWCSRTFANGSNCRSHKRRMHPEEL 147
+GKRP+ C C F +NC H ++H + L
Sbjct: 3 SGKRPFVCRICLSAFTTKANCARH-LKVHTDTL 34
>pdb|2YTJ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (region
771- 803) Of Human Zinc Finger Protein 484
Length = 46
Score = 34.3 bits (77), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 20/31 (64%)
Query: 49 ERPFVCHECGQSFASKGILQEHLTIHSDDAP 79
E+P++C ECG++F + L +H IH+ P
Sbjct: 10 EKPYICAECGKAFTIRSNLIKHQKIHTKQKP 40
>pdb|1BBO|A Chain A, High-Resolution Solution Structure Of The Double
Cys2His2 Zinc Finger From The Human Enhancer Binding
Protein Mbp-1
Length = 57
Score = 33.9 bits (76), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 11/35 (31%), Positives = 20/35 (57%)
Query: 52 FVCHECGQSFASKGILQEHLTIHSDDAPWKCDICS 86
++C ECG +L++H+ H+D P+ C C+
Sbjct: 2 YICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCN 36
Score = 30.8 bits (68), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 19/42 (45%)
Query: 97 CGWYPDESKDLKNHHNLHTGKRPYTCPWCSRTFANGSNCRSH 138
CG + LK H HT RPY C +C+ +F N H
Sbjct: 7 CGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKH 48
Score = 26.6 bits (57), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 15/27 (55%)
Query: 45 VHLGERPFVCHECGQSFASKGILQEHL 71
H RP+ C C SF +KG L +H+
Sbjct: 23 THTDVRPYHCTYCNFSFKTKGNLTKHM 49
>pdb|2EM2|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
584- 616) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 33.9 bits (76), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 49 ERPFVCHECGQSFASKGILQEHLTIHSDDAP 79
E+PF C ECG++F L HL IH+ + P
Sbjct: 10 EKPFKCKECGKAFRQNIHLASHLRIHTGEKP 40
>pdb|2YTR|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
760- 792) Of Human Zinc Finger Protein 347
Length = 46
Score = 33.9 bits (76), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 20/31 (64%)
Query: 49 ERPFVCHECGQSFASKGILQEHLTIHSDDAP 79
E+P+ C+ECG++F+ L H IH+ + P
Sbjct: 10 EKPYKCNECGKAFSQTSKLARHQRIHTGEKP 40
>pdb|2M0F|A Chain A, Solution Structure Of Miz-1 Zinc Finger 7
Length = 29
Score = 33.9 bits (76), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 17/27 (62%)
Query: 51 PFVCHECGQSFASKGILQEHLTIHSDD 77
P C ECG+ F + G L+ HL IHS +
Sbjct: 2 PLKCRECGKQFTTSGNLKRHLRIHSGE 28
>pdb|1F2I|G Chain G, Cocrystal Structure Of Selected Zinc Finger Dimer Bound
To Dna
pdb|1F2I|H Chain H, Cocrystal Structure Of Selected Zinc Finger Dimer Bound
To Dna
pdb|1F2I|I Chain I, Cocrystal Structure Of Selected Zinc Finger Dimer Bound
To Dna
pdb|1F2I|J Chain J, Cocrystal Structure Of Selected Zinc Finger Dimer Bound
To Dna
pdb|1F2I|K Chain K, Cocrystal Structure Of Selected Zinc Finger Dimer Bound
To Dna
pdb|1F2I|L Chain L, Cocrystal Structure Of Selected Zinc Finger Dimer Bound
To Dna
Length = 73
Score = 33.9 bits (76), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Query: 31 RFSSRSAVTAHTKAVHLGERPFVCHECGQSFASKGILQEHLTIHS 75
RFS +T H + +H G++PF C C ++F+ L H+ H+
Sbjct: 30 RFSRSDELTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTHIRTHT 73
Score = 33.5 bits (75), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 23/45 (51%)
Query: 96 SCGWYPDESKDLKNHHNLHTGKRPYTCPWCSRTFANGSNCRSHKR 140
SC S +L H +HTG++P+ C C R F+ + +H R
Sbjct: 26 SCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIR 70
Score = 32.7 bits (73), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Query: 50 RPFVC--HECGQSFASKGILQEHLTIHSDDAPWKCDICSK 87
RP+ C C + F+ L H+ IH+ P++C IC +
Sbjct: 18 RPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMR 57
>pdb|2EMH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
491- 523) Of Human Zinc Finger Protein 484
Length = 46
Score = 33.9 bits (76), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 20/31 (64%)
Query: 49 ERPFVCHECGQSFASKGILQEHLTIHSDDAP 79
ERP++C CG++F + L +H IH+ + P
Sbjct: 10 ERPYICTVCGKAFTDRSNLIKHQKIHTGEKP 40
>pdb|2EMJ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
612- 644) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 33.5 bits (75), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 49 ERPFVCHECGQSFASKGILQEHLTIHSDDAP 79
E+PF C ECG+SF+ L H IH+ + P
Sbjct: 10 EKPFECAECGKSFSISSQLATHQRIHTGEKP 40
>pdb|3UK3|C Chain C, Crystal Structure Of Znf217 Bound To Dna
pdb|3UK3|D Chain D, Crystal Structure Of Znf217 Bound To Dna
pdb|4F2J|C Chain C, Crystal Structure Of Znf217 Bound To Dna, P6522 Crystal
Form
pdb|4IS1|C Chain C, Crystal Structure Of Znf217 Bound To Dna
pdb|4IS1|D Chain D, Crystal Structure Of Znf217 Bound To Dna
Length = 57
Score = 33.5 bits (75), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 18/32 (56%)
Query: 54 CHECGQSFASKGILQEHLTIHSDDAPWKCDIC 85
C CG+ F S L HL H+ + P+KC+ C
Sbjct: 7 CSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFC 38
Score = 32.0 bits (71), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 23/47 (48%)
Query: 97 CGWYPDESKDLKNHHNLHTGKRPYTCPWCSRTFANGSNCRSHKRRMH 143
CG + + L H HTG++PY C +C A ++ R H R H
Sbjct: 10 CGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERHH 56
Score = 26.9 bits (58), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Query: 32 FSSRSAVTAHTKAVHLGERPFVCHECGQSFASKGILQEHLTIH 74
F S + H + H GE+P+ C C + A K L+ HL H
Sbjct: 14 FRSNYYLNIHLR-THTGEKPYKCEFCEYAAAQKTSLRYHLERH 55
>pdb|2EQ0|A Chain A, Solution Structure Of The 8th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 347
Length = 46
Score = 33.5 bits (75), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 49 ERPFVCHECGQSFASKGILQEHLTIHSDDAP 79
E+P+ CHECG+ F L H IH+ + P
Sbjct: 10 EKPYKCHECGKVFRRNSHLARHQLIHTGEKP 40
>pdb|2EN0|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
385- 413) Of Human Zinc Finger Protein 268
Length = 42
Score = 33.5 bits (75), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 22/31 (70%)
Query: 48 GERPFVCHECGQSFASKGILQEHLTIHSDDA 78
G++P+VC+ECG++F K L H IH+ ++
Sbjct: 7 GQKPYVCNECGKAFGLKSQLIIHERIHTGES 37
>pdb|2EMC|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
641- 673) Of Human Zinc Finger Protein 473
Length = 46
Score = 33.1 bits (74), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 20/31 (64%)
Query: 49 ERPFVCHECGQSFASKGILQEHLTIHSDDAP 79
E PF C+ECG++F+ L +H IH+ + P
Sbjct: 10 EHPFKCNECGKTFSHSAHLSKHQLIHAGENP 40
>pdb|2EOG|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
693- 723) Of Human Zinc Finger Protein 268
Length = 44
Score = 33.1 bits (74), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 20/32 (62%)
Query: 48 GERPFVCHECGQSFASKGILQEHLTIHSDDAP 79
G +P+ C ECG++F SK L H+ H+ + P
Sbjct: 7 GVKPYGCSECGKAFRSKSYLIIHMRTHTGEKP 38
>pdb|2EN4|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
284- 316) Of Human Zinc Finger Protein 347
Length = 46
Score = 33.1 bits (74), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 20/29 (68%)
Query: 49 ERPFVCHECGQSFASKGILQEHLTIHSDD 77
E+P+ C+ECG++F ++ L H IH+ +
Sbjct: 10 EKPYKCYECGKAFRTRSNLTTHQVIHTGE 38
>pdb|2EN1|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
563- 595) Of Human Zinc Finger Protein 224
Length = 46
Score = 33.1 bits (74), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 49 ERPFVCHECGQSFASKGILQEHLTIHSDDAP 79
E+PF C ECG+ F L H +H+ + P
Sbjct: 10 EKPFKCEECGKRFTQNSQLHSHQRVHTGEKP 40
>pdb|2EQ1|A Chain A, Solution Structure Of The 9th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 347
Length = 46
Score = 33.1 bits (74), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 20/31 (64%)
Query: 49 ERPFVCHECGQSFASKGILQEHLTIHSDDAP 79
E+P+ C+ECG++F + L H IH+ + P
Sbjct: 10 EKPYKCNECGKAFRAHSNLTTHQVIHTGEKP 40
>pdb|2EMM|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
544- 576) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 32.7 bits (73), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 49 ERPFVCHECGQSFASKGILQEHLTIHSDDAP 79
ERP C+ECG+SF L +H IH+ + P
Sbjct: 10 ERPHKCNECGKSFIQSAHLIQHQRIHTGEKP 40
>pdb|2EOW|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
368- 400) Of Human Zinc Finger Protein 347
Length = 46
Score = 32.7 bits (73), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 20/31 (64%)
Query: 49 ERPFVCHECGQSFASKGILQEHLTIHSDDAP 79
E+P+ C+ECG++F ++ L H HS + P
Sbjct: 10 EKPYKCNECGKAFRARSSLAIHQATHSGEKP 40
>pdb|1TF3|A Chain A, Tfiiia Finger 1-3 Bound To Dna, Nmr, 22 Structures
Length = 92
Score = 32.7 bits (73), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 39/92 (42%), Gaps = 16/92 (17%)
Query: 56 ECGQSFASKGILQEHLTIHSDDAPWKC--DICSKKSLKLSNVSCGWYPDESKDLKNHHNL 113
+CG ++ LQ HL+ H+ + P+ C + C K L + L H
Sbjct: 10 DCGAAYNKNWKLQAHLSKHTGEKPFPCKEEGCEKGFTSLHH------------LTRHSLT 57
Query: 114 HTGKRPYTC--PWCSRTFANGSNCRSHKRRMH 143
HTG++ +TC C F +N + H R H
Sbjct: 58 HTGEKNFTCDSDGCDLRFTTKANMKKHFNRFH 89
Score = 29.6 bits (65), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
Query: 46 HLGERPFVCHE--CGQSFASKGILQEHLTIHSDDAPWKCD 83
H GE+PF C E C + F S L H H+ + + CD
Sbjct: 28 HTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCD 67
>pdb|2EMY|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
551- 583) Of Human Zinc Finger Protein 268
Length = 46
Score = 32.7 bits (73), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 49 ERPFVCHECGQSFASKGILQEHLTIHSDDAP 79
E P+ CHECG++F+ K L H H+ + P
Sbjct: 10 ENPYECHECGKAFSRKYQLISHQRTHAGEKP 40
>pdb|2EMG|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
463- 495) Of Human Zinc Finger Protein 484
Length = 46
Score = 32.7 bits (73), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 49 ERPFVCHECGQSFASKGILQEHLTIHSDDAP 79
E PF+C ECG+ F K L H IH+ + P
Sbjct: 10 ENPFICSECGKVFTHKTNLIIHQKIHTGERP 40
>pdb|2YTG|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
369- 401) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 32.7 bits (73), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 20/31 (64%)
Query: 49 ERPFVCHECGQSFASKGILQEHLTIHSDDAP 79
E+PF C ECG+S+ + L +H +H+ + P
Sbjct: 10 EKPFKCGECGKSYNQRVHLTQHQRVHTGEKP 40
>pdb|2EQW|A Chain A, Solution Structure Of The 6th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 484
Length = 42
Score = 32.7 bits (73), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 20/31 (64%)
Query: 48 GERPFVCHECGQSFASKGILQEHLTIHSDDA 78
GE+P+VC ECG++F K H IH+ ++
Sbjct: 7 GEKPYVCTECGKAFIRKSHFITHERIHTGES 37
>pdb|2EMP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
536- 568) Of Human Zinc Finger Protein 347
Length = 46
Score = 32.7 bits (73), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 20/30 (66%)
Query: 50 RPFVCHECGQSFASKGILQEHLTIHSDDAP 79
+P++C+ECG++F+ L H IH+ + P
Sbjct: 11 KPYMCNECGKAFSVYSSLTTHQVIHTGEKP 40
>pdb|2EM1|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
637- 667) Of Human Zinc Finger Protein 268
Length = 44
Score = 32.7 bits (73), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 20/32 (62%)
Query: 48 GERPFVCHECGQSFASKGILQEHLTIHSDDAP 79
GE+P+ C+ECG++F K L H +H+ P
Sbjct: 7 GEKPYSCNECGKAFTFKSQLIVHKGVHTGVKP 38
>pdb|2YT9|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 345 In
Zinc Finger Protein 278
Length = 95
Score = 32.7 bits (73), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 39/96 (40%), Gaps = 10/96 (10%)
Query: 48 GERPFVCHECGQSFASKGILQEHLTIHSDDAPWKCDICSKKSLKLSNVSCGWYPDESKDL 107
G C CG+ F L H HS + P+ C +C + + +S Y S
Sbjct: 4 GSSGVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMS---YHVRS--- 57
Query: 108 KNHHNLHTGKRPYTCPWCSRTFANGSNCRSHKRRMH 143
H+ GK PY C C + F+ + H +++H
Sbjct: 58 ---HDGSVGK-PYICQSCGKGFSRPDHLNGHIKQVH 89
Score = 30.8 bits (68), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 22/47 (46%), Gaps = 2/47 (4%)
Query: 43 KAVHLGERPFVCHECGQSFASKGILQEHLTIH--SDDAPWKCDICSK 87
K H GE+P+ C CG F K + H+ H S P+ C C K
Sbjct: 27 KLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQSCGK 73
Score = 29.3 bits (64), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 8/63 (12%)
Query: 97 CGWYPDESKDLKNHHNLHTGKRPYTCPWCSRTFANGSNCRSHKRRMHPEELKLYESSLGK 156
CG + L H H+G++PY+CP C F K RM ++ ++ S+GK
Sbjct: 13 CGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKR-------KDRM-SYHVRSHDGSVGK 64
Query: 157 IFL 159
++
Sbjct: 65 PYI 67
>pdb|2EM9|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
367- 399) Of Human Zinc Finger Protein 224
Length = 46
Score = 32.3 bits (72), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 49 ERPFVCHECGQSFASKGILQEHLTIHSDDAP 79
E+P+ C ECG+SF L +H +HS + P
Sbjct: 10 EKPYNCKECGKSFRWASCLLKHQRVHSGEKP 40
>pdb|2YTH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
479- 511) Of Human Zinc Finger Protein 224
Length = 46
Score = 32.3 bits (72), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 49 ERPFVCHECGQSFASKGILQEHLTIHSDDAP 79
E+PF C ECG+ F L H +H+ + P
Sbjct: 10 EKPFQCEECGKRFTQNSHLHSHQRVHTGEKP 40
>pdb|2EP1|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
435- 467) Of Human Zinc Finger Protein 484
Length = 46
Score = 32.3 bits (72), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 49 ERPFVCHECGQSFASKGILQEHLTIHSDDAP 79
E+P+ C +CG+SF K L H IH+ + P
Sbjct: 10 EKPYECSDCGKSFIKKSQLHVHQRIHTGENP 40
>pdb|2EQ3|A Chain A, Solution Structure Of The 17th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 347
Length = 46
Score = 32.3 bits (72), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 20/31 (64%)
Query: 49 ERPFVCHECGQSFASKGILQEHLTIHSDDAP 79
E+P+ C++CG++F+ + L H IH+ P
Sbjct: 10 EKPYECNQCGKAFSVRSSLTTHQAIHTGKKP 40
>pdb|2YTK|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
396- 428) Of Human Zinc Finger Protein 347
Length = 46
Score = 32.3 bits (72), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 49 ERPFVCHECGQSFASKGILQEHLTIHSDDAP 79
E+P+ C+ECG+ F L H IH+ + P
Sbjct: 10 EKPYKCNECGKVFTQNSHLTNHWRIHTGEKP 40
>pdb|2EOK|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
441- 469) Of Human Zinc Finger Protein 268
Length = 42
Score = 32.3 bits (72), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 19/28 (67%)
Query: 48 GERPFVCHECGQSFASKGILQEHLTIHS 75
GE+P+VC +CG++F K L H IH+
Sbjct: 7 GEKPYVCSDCGKAFTFKSQLIVHQGIHT 34
>pdb|2ELY|A Chain A, Solution Structure Of The Third Zf-C2h2 Domain From
Human Zinc Finger Protein 224
Length = 46
Score = 32.3 bits (72), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 19/31 (61%)
Query: 49 ERPFVCHECGQSFASKGILQEHLTIHSDDAP 79
E+PF C ECG+ F+ + L H +H+ + P
Sbjct: 10 EKPFKCVECGKGFSRRSALNVHHKLHTGEKP 40
>pdb|2YTP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
687- 719) Of Human Zinc Finger Protein 484
Length = 46
Score = 32.3 bits (72), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 49 ERPFVCHECGQSFASKGILQEHLTIHSDDAP 79
ER + C ECG++FA K L H IH+ + P
Sbjct: 10 ERHYECSECGKAFARKSTLIMHQRIHTGEKP 40
>pdb|2ENE|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (region
592- 624) Of Human Zinc Finger Protein 347
Length = 46
Score = 32.3 bits (72), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 49 ERPFVCHECGQSFASKGILQEHLTIHSDDAP 79
E+P+ C+ECG+ F L H IH+ + P
Sbjct: 10 EKPYKCNECGKVFRHNSYLSRHQRIHTGEKP 40
>pdb|2EN7|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
495- 525) Of Human Zinc Finger Protein 268
Length = 44
Score = 32.3 bits (72), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 20/29 (68%)
Query: 50 RPFVCHECGQSFASKGILQEHLTIHSDDA 78
+P+VC+ECG++F SK L H H+ ++
Sbjct: 11 KPYVCNECGKAFRSKSYLIIHTRTHTGES 39
>pdb|2EPU|A Chain A, Solution Structure Of The Secound C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 32
Length = 45
Score = 32.3 bits (72), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 19/29 (65%)
Query: 49 ERPFVCHECGQSFASKGILQEHLTIHSDD 77
++PF C CG+SF +KG L H IH+ +
Sbjct: 10 QKPFECTHCGKSFRAKGNLVTHQRIHTGE 38
>pdb|2EP3|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
631- 663) Of Human Zinc Finger Protein 484
Length = 46
Score = 32.0 bits (71), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 19/31 (61%)
Query: 49 ERPFVCHECGQSFASKGILQEHLTIHSDDAP 79
E+P+ C ECG++F + L H IH+ + P
Sbjct: 10 EKPYRCAECGKAFTDRSNLFTHQKIHTGEKP 40
>pdb|2YTI|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
564- 596) Of Human Zinc Finger Protein 347
Length = 46
Score = 32.0 bits (71), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 49 ERPFVCHECGQSFASKGILQEHLTIHSDDAP 79
E+P+ C+ECG+ F L H IH+ + P
Sbjct: 10 EKPYKCNECGKVFTQNSHLARHRGIHTGEKP 40
>pdb|2EOQ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
283- 315) Of Human Zinc Finger Protein 224
Length = 46
Score = 32.0 bits (71), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 49 ERPFVCHECGQSFASKGILQEHLTIHSDDAP 79
E+PF C CG+SF + L H +H+ + P
Sbjct: 10 EKPFKCDICGKSFCGRSRLNRHSMVHTAEKP 40
>pdb|2LVR|A Chain A, Solution Structure Of Miz-1 Zinc Finger 8
Length = 30
Score = 31.6 bits (70), Expect = 0.20, Method: Composition-based stats.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 50 RPFVCHECGQSFASKGILQEHLTIHSDD 77
+P+VC C + FA G LQ H+ IH+ +
Sbjct: 2 KPYVCIHCQRQFADPGALQRHVRIHTGE 29
>pdb|2EP2|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
603- 635) Of Human Zinc Finger Protein 484
Length = 46
Score = 31.6 bits (70), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 49 ERPFVCHECGQSFASKGILQEHLTIHSDDAP 79
E+P+ C CG+SF K L H IH+ + P
Sbjct: 10 EKPYECSICGKSFTKKSQLHVHQQIHTGEKP 40
>pdb|2EQ2|A Chain A, Solution Structure Of The 16th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 347
Length = 46
Score = 31.6 bits (70), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 10/30 (33%), Positives = 19/30 (63%)
Query: 50 RPFVCHECGQSFASKGILQEHLTIHSDDAP 79
+P+ C+ECG++F+ L H +H+ + P
Sbjct: 11 KPYQCNECGKAFSQTSKLARHQRVHTGEKP 40
>pdb|2ENF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
340- 372) Of Human Zinc Finger Protein 347
Length = 46
Score = 31.6 bits (70), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 49 ERPFVCHECGQSFASKGILQEHLTIHSDDAP 79
E+P+ C+ECG+ F L H IH+ + P
Sbjct: 10 EKPYKCNECGKVFTQNSHLVRHRGIHTGEKP 40
>pdb|2ENA|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
311- 343) Of Human Zinc Finger Protein 224
Length = 46
Score = 31.6 bits (70), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 49 ERPFVCHECGQSFASKGILQEHLTIHSDDAP 79
E+PF C C +SF + L H IH+ + P
Sbjct: 10 EKPFRCDTCDKSFRQRSALNSHRMIHTGEKP 40
>pdb|2EMK|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
668- 700) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 31.6 bits (70), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 20/31 (64%)
Query: 49 ERPFVCHECGQSFASKGILQEHLTIHSDDAP 79
E+P+ C ECG++F+ L +H +H+ + P
Sbjct: 10 EKPYECKECGKAFSQTTHLIQHQRVHTGEKP 40
>pdb|1X6H|A Chain A, Solution Structures Of The C2h2 Type Zinc Finger Domain
Of Human Transcriptional Repressor Ctcf
Length = 86
Score = 31.2 bits (69), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 4/47 (8%)
Query: 45 VHLGERPFVCHECGQSFASKGILQEHLTIHSD----DAPWKCDICSK 87
H GE+P+ C C ++F K +L H + D A + C C K
Sbjct: 9 THTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGK 55
Score = 27.3 bits (59), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 16/30 (53%)
Query: 114 HTGKRPYTCPWCSRTFANGSNCRSHKRRMH 143
HTG++PY C C +TF H +R H
Sbjct: 10 HTGEKPYACSHCDKTFRQKQLLDMHFKRYH 39
>pdb|2EME|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
725- 757) Of Human Zinc Finger Protein 473
Length = 46
Score = 31.2 bits (69), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 49 ERPFVCHECGQSFASKGILQEHLTIHSDDAP 79
E+P+VC CG++F L H IH+ + P
Sbjct: 10 EKPYVCDYCGKAFGLSAELVRHQRIHTGEKP 40
>pdb|2EOO|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
425- 457) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 30.8 bits (68), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 17/26 (65%)
Query: 49 ERPFVCHECGQSFASKGILQEHLTIH 74
ERP+ C+ECG++F L EHL H
Sbjct: 10 ERPYGCNECGKNFGRHSHLIEHLKRH 35
>pdb|2YTD|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
426- 458) Of Human Zinc Finger Protein 473
Length = 46
Score = 30.8 bits (68), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 49 ERPFVCHECGQSFASKGILQEHLTIHSDDAP 79
E+P+ C ECG++F L EH IH+ P
Sbjct: 10 EKPYKCSECGKAFHRHTHLNEHRRIHTGYRP 40
>pdb|2YU8|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
648- 680) Of Human Zinc Finger Protein 347
Length = 46
Score = 30.8 bits (68), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 17/31 (54%)
Query: 49 ERPFVCHECGQSFASKGILQEHLTIHSDDAP 79
E+P+ C+ECG+ F L H +H+ P
Sbjct: 10 EKPYKCNECGKVFTQNSHLARHRRVHTGGKP 40
>pdb|2EPS|A Chain A, Solution Structure Of The 4th Zinc Finger Domain Of Zinc
Finger Protein 278
Length = 54
Score = 30.8 bits (68), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 11/36 (30%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Query: 50 RPFVCHECGQSFASKGILQEHL-TIHSDDAPWKCDI 84
+P++C CG+ F+ L H+ +H+ + P KC +
Sbjct: 11 KPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQV 46
>pdb|2EPZ|A Chain A, Solution Structure Of The 4th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 28 Homolog
Length = 46
Score = 30.8 bits (68), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 20/31 (64%)
Query: 49 ERPFVCHECGQSFASKGILQEHLTIHSDDAP 79
E+PF C +CG++F+ L +H IH+ + P
Sbjct: 10 EKPFDCIDCGKAFSDHIGLNQHRRIHTGEKP 40
>pdb|2EMX|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
273- 303) Of Human Zinc Finger Protein 268
Length = 44
Score = 30.8 bits (68), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 20/32 (62%)
Query: 48 GERPFVCHECGQSFASKGILQEHLTIHSDDAP 79
GE+PF C C ++F+SK L H H+++ P
Sbjct: 7 GEKPFGCSCCEKAFSSKSYLLVHQQTHAEEKP 38
>pdb|2YSP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
507- 539) Of Human Zinc Finger Protein 224
Length = 46
Score = 30.8 bits (68), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 19/31 (61%)
Query: 49 ERPFVCHECGQSFASKGILQEHLTIHSDDAP 79
E+P+ C +CG+ + SK L H +H+ + P
Sbjct: 10 EKPYKCEKCGKGYNSKFNLDMHQKVHTGERP 40
>pdb|2EOZ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
809- 841) Of Human Zinc Finger Protein 473
Length = 46
Score = 30.8 bits (68), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 10/29 (34%), Positives = 19/29 (65%)
Query: 49 ERPFVCHECGQSFASKGILQEHLTIHSDD 77
E+P+ C+ CG++F L +HL +H+ +
Sbjct: 10 EKPYSCNVCGKAFVLSAHLNQHLRVHTQE 38
>pdb|2EMI|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
547- 579) Of Human Zinc Finger Protein 484
Length = 46
Score = 30.4 bits (67), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 49 ERPFVCHECGQSFASKGILQEHLTIHSDDAP 79
ER + C ECG++F K L H IH + P
Sbjct: 10 ERHYECSECGKAFIQKSTLSMHQRIHRGEKP 40
>pdb|2YTN|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
732- 764) Of Human Zinc Finger Protein 347
Length = 46
Score = 30.4 bits (67), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 18/31 (58%)
Query: 49 ERPFVCHECGQSFASKGILQEHLTIHSDDAP 79
++P+ C+ECG+ F L H IH+ + P
Sbjct: 10 KKPYKCNECGKVFTQNSHLARHRGIHTGEKP 40
>pdb|2YTT|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
204- 236) Of Human Zinc Finger Protein 473
Length = 46
Score = 30.4 bits (67), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 18/30 (60%)
Query: 50 RPFVCHECGQSFASKGILQEHLTIHSDDAP 79
+P+ C ECG+SF+ L +H H+ + P
Sbjct: 11 KPYQCSECGKSFSGSYRLTQHWITHTREKP 40
>pdb|2EM5|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
768- 800) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 30.4 bits (67), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 54 CHECGQSFASKGILQEHLTIHSDDAP 79
CHECG+ F K L +H IH+ + P
Sbjct: 15 CHECGRGFTLKSHLNQHQRIHTGEKP 40
>pdb|2EOE|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
508- 540) Of Human Zinc Finger Protein 347
Length = 46
Score = 30.4 bits (67), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 49 ERPFVCHECGQSFASKGILQEHLTIHSDDAP 79
E+P+ C+ECG+ F L H IH+ P
Sbjct: 10 EKPYKCNECGKVFTQNSHLANHQRIHTGVKP 40
>pdb|2EMA|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
312- 344) Of Human Zinc Finger Protein 347
Length = 46
Score = 30.4 bits (67), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 19/31 (61%)
Query: 49 ERPFVCHECGQSFASKGILQEHLTIHSDDAP 79
E+ + C+ECG+ F+ L +H IH+ + P
Sbjct: 10 EKRYKCNECGKVFSRNSQLSQHQKIHTGEKP 40
>pdb|2EMF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
379- 411) Of Human Zinc Finger Protein 484
Length = 46
Score = 30.4 bits (67), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 52 FVCHECGQSFASKGILQEHLTIHSDDAP 79
F C ECG++F K L H IH+ + P
Sbjct: 13 FECTECGKAFTRKSTLSMHQKIHTGEKP 40
>pdb|2EM7|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
339- 371) Of Human Zinc Finger Protein 224
Length = 46
Score = 30.0 bits (66), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 18/31 (58%)
Query: 49 ERPFVCHECGQSFASKGILQEHLTIHSDDAP 79
E+P+ C ECG+ F + L H +H+ + P
Sbjct: 10 EKPYKCEECGKGFICRRDLYTHHMVHTGEKP 40
Score = 26.2 bits (56), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 12/43 (27%)
Query: 77 DAPWKCDICSKKSLKLSNVSCGWYPDESKDLKNHHNLHTGKRP 119
+ P+KC+ C K + C +DL HH +HTG++P
Sbjct: 10 EKPYKCEECGKGFI------C------RRDLYTHHMVHTGEKP 40
>pdb|2EN2|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
598- 626) Of Human B-Cell Lymphoma 6 Protein
Length = 42
Score = 30.0 bits (66), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 16/31 (51%)
Query: 49 ERPFVCHECGQSFASKGILQEHLTIHSDDAP 79
E+P+ C CG F L+ H+ IH+ P
Sbjct: 9 EKPYKCETCGARFVQVAHLRAHVLIHTGSGP 39
>pdb|7ZNF|A Chain A, Alternating Zinc Fingers In The Human Male Associated
Protein Zfy: 2d Nmr Structure Of An Even Finger And
Implications For "jumping-Linker" Dna Recognition
Length = 30
Score = 30.0 bits (66), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 10/29 (34%), Positives = 18/29 (62%)
Query: 118 RPYTCPWCSRTFANGSNCRSHKRRMHPEE 146
+ Y C +C + FA+ SN ++H + H +E
Sbjct: 1 KTYQCQYCEKRFADSSNLKTHIKTKHSKE 29
>pdb|2EPC|A Chain A, Solution Structure Of Zinc Finger Domain 7 In Zinc
Finger Protein 32
Length = 42
Score = 29.6 bits (65), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 49 ERPFVCHECGQSFASKGILQEHLTIHSDDAP 79
E P++C +CG+SF +G L H S P
Sbjct: 9 ETPYLCGQCGKSFTQRGSLAVHQRSCSQSGP 39
>pdb|2EOS|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
626- 654) Of Human B-Cell Lymphoma 6 Protein
Length = 42
Score = 29.6 bits (65), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 16/31 (51%)
Query: 49 ERPFVCHECGQSFASKGILQEHLTIHSDDAP 79
E+P+ C CG F L+ HL IH+ P
Sbjct: 9 EKPYPCEICGTRFRHLQTLKSHLRIHTGSGP 39
>pdb|2ENC|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
395- 427) Of Human Zinc Finger Protein 224
Length = 46
Score = 29.6 bits (65), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 16/31 (51%)
Query: 49 ERPFVCHECGQSFASKGILQEHLTIHSDDAP 79
E+PF C ECG+ F + H HS + P
Sbjct: 10 EKPFKCEECGKGFYTNSQCYSHQRSHSGEKP 40
>pdb|2EL5|A Chain A, Solution Structure Of The 18th Zf-C2h2 Domain From Human
Zinc Finger Protein 268
Length = 42
Score = 29.6 bits (65), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 48 GERPFVCHECGQSFASKGILQEHLTIHSDDA 78
GE P+ C ECG++F K L H H+ ++
Sbjct: 7 GENPYECSECGKAFNRKDQLISHQRTHAGES 37
>pdb|2EON|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
397- 429) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 29.3 bits (64), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 19/31 (61%)
Query: 49 ERPFVCHECGQSFASKGILQEHLTIHSDDAP 79
E+P+ C CG++F L +H ++HS + P
Sbjct: 10 EKPYKCQVCGKAFRVSSHLVQHHSVHSGERP 40
Score = 27.7 bits (60), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 24/43 (55%), Gaps = 12/43 (27%)
Query: 77 DAPWKCDICSKKSLKLSNVSCGWYPDESKDLKNHHNLHTGKRP 119
+ P+KC +C K + ++S+ L HH++H+G+RP
Sbjct: 10 EKPYKCQVCGK-AFRVSS-----------HLVQHHSVHSGERP 40
>pdb|2YTM|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
696- 728) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 29.3 bits (64), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 10/31 (32%), Positives = 17/31 (54%)
Query: 49 ERPFVCHECGQSFASKGILQEHLTIHSDDAP 79
E+P+ C ECG++F +H +H+ P
Sbjct: 10 EKPYKCMECGKAFGDNSSCTQHQRLHTGQRP 40
Score = 27.3 bits (59), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 9/24 (37%), Positives = 15/24 (62%)
Query: 117 KRPYTCPWCSRTFANGSNCRSHKR 140
++PY C C + F + S+C H+R
Sbjct: 10 EKPYKCMECGKAFGDNSSCTQHQR 33
>pdb|1X5W|A Chain A, Solution Structure Of The C2h2 Type Zinc-Binding Domain
Of Human Zinc Finger Protein 64, Isoforms 1 And 2
Length = 70
Score = 29.3 bits (64), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 20/33 (60%)
Query: 64 KGILQEHLTIHSDDAPWKCDICSKKSLKLSNVS 96
K L+ H IH D P+KC+ CS + + SN+S
Sbjct: 22 KAALRIHERIHCTDRPFKCNYCSFDTKQPSNLS 54
Score = 27.7 bits (60), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 18/37 (48%)
Query: 107 LKNHHNLHTGKRPYTCPWCSRTFANGSNCRSHKRRMH 143
L+ H +H RP+ C +CS SN H ++ H
Sbjct: 25 LRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKKFH 61
>pdb|2YTE|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
484- 512) Of Human Zinc Finger Protein 473
Length = 42
Score = 29.3 bits (64), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 18/28 (64%)
Query: 48 GERPFVCHECGQSFASKGILQEHLTIHS 75
GE+P+ C EC ++F+ L +H +H+
Sbjct: 7 GEKPYSCAECKETFSDNNRLVQHQKMHT 34
Score = 26.6 bits (57), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 10/29 (34%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Query: 115 TGKRPYTCPWCSRTFANGSNCRSHKRRMH 143
+G++PY+C C TF++ + H ++MH
Sbjct: 6 SGEKPYSCAECKETFSDNNRLVQH-QKMH 33
>pdb|2EML|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
752- 784) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 29.3 bits (64), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 49 ERPFVCHECGQSFASKGILQEHLTIHSDDAP 79
E+P+ C CG++F+ + L H IHS P
Sbjct: 10 EKPYECSVCGKAFSHRQSLSVHQRIHSGKKP 40
>pdb|2EOP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
719- 751) Of Human Zinc Finger Protein 268
Length = 46
Score = 29.3 bits (64), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 49 ERPFVCHECGQSFASKGILQEHLTIHSDDAP 79
E+P C ECG+SF+ L H IH+ + P
Sbjct: 10 EKPHECRECGKSFSFNSQLIVHQRIHTGENP 40
>pdb|2EM4|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
724- 756) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 29.3 bits (64), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 19/31 (61%)
Query: 49 ERPFVCHECGQSFASKGILQEHLTIHSDDAP 79
+RP+ C ECG++F +K L H H+ + P
Sbjct: 10 QRPYECIECGKAFKTKSSLICHRRSHTGEKP 40
>pdb|2ELR|A Chain A, Solution Structure Of The 15th C2h2 Zinc Finger Of Human
Zinc Finger Protein 406
Length = 36
Score = 29.3 bits (64), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 50 RPFVCHECGQSFASKGILQEHLTIHSDDA 78
+ +C CG+ F SKG L+ H +H+ D
Sbjct: 8 KTHLCDMCGKKFKSKGTLKSHKLLHTADG 36
>pdb|2YTF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
607- 639) Of Human Zinc Finger Protein 268
Length = 46
Score = 29.3 bits (64), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 49 ERPFVCHECGQSFASKGILQEHLTIHSDDAP 79
E+PF C EC ++F +K L H H+ + P
Sbjct: 10 EKPFECSECQKAFNTKSNLIVHQRTHTGEKP 40
>pdb|2DRP|A Chain A, The Crystal Structure Of A Two Zinc-Finger Peptide Reveals
An Extension To The Rules For Zinc-FingerDNA RECOGNITION
pdb|2DRP|D Chain D, The Crystal Structure Of A Two Zinc-Finger Peptide Reveals
An Extension To The Rules For Zinc-FingerDNA RECOGNITION
Length = 66
Score = 28.9 bits (63), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 14/64 (21%), Positives = 28/64 (43%), Gaps = 10/64 (15%)
Query: 80 WKCDICSKKSLKLSNVSCGWYPDESKDLKNHHNLHTGKRPYTCPWCSRTFANGSNCRSHK 139
++C +CS+ +SN + +++K Y CP+C + F N +H
Sbjct: 11 YRCKVCSRVYTHISNFCRHYVTSHKRNVK----------VYPCPFCFKEFTRKDNMTAHV 60
Query: 140 RRMH 143
+ +H
Sbjct: 61 KIIH 64
>pdb|1P7A|A Chain A, Solution Stucture Of The Third Zinc Finger From Bklf
Length = 37
Score = 28.9 bits (63), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 10/27 (37%), Positives = 17/27 (62%)
Query: 115 TGKRPYTCPWCSRTFANGSNCRSHKRR 141
TG +P+ CP C R+F+ + H++R
Sbjct: 7 TGIKPFQCPDCDRSFSRSDHLALHRKR 33
>pdb|2LV2|A Chain A, Solution Nmr Structure Of C2h2-Type Zinc-Fingers 4 And 5
From Human Insulinoma-Associated Protein 1 (Fragment
424-497), Northeast Structural Genomics Consortium
Target Hr7614b
Length = 85
Score = 28.9 bits (63), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 18/33 (54%)
Query: 53 VCHECGQSFASKGILQEHLTIHSDDAPWKCDIC 85
+C CG+SFASKG + HL + + C C
Sbjct: 30 LCPVCGESFASKGAQERHLRLLHAAQVFPCKYC 62
>pdb|2EQ4|A Chain A, Solution Structure Of The 11th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 224
Length = 46
Score = 28.5 bits (62), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 19/31 (61%)
Query: 49 ERPFVCHECGQSFASKGILQEHLTIHSDDAP 79
E+ + C ECG+SF+ L +H +HS + P
Sbjct: 10 EKLYNCKECGKSFSRAPCLLKHERLHSGEKP 40
>pdb|2EPV|A Chain A, Solution Structure Of The 20th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 268
Length = 44
Score = 28.5 bits (62), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 18/27 (66%)
Query: 49 ERPFVCHECGQSFASKGILQEHLTIHS 75
E+P+ C+ECG++F K +L H H+
Sbjct: 10 EKPYECNECGKAFIWKSLLIVHERTHA 36
>pdb|2EN3|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
796- 828) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 28.5 bits (62), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 49 ERPFVCHECGQSFASKGILQEHLTIHSDDAP 79
E+PF C ECG +F+ L +HL H P
Sbjct: 10 EKPFQCKECGMNFSWSCSLFKHLRSHERTDP 40
>pdb|2EPW|A Chain A, Solution Structure Of The 24th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 268
Length = 46
Score = 28.1 bits (61), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 16/29 (55%)
Query: 49 ERPFVCHECGQSFASKGILQEHLTIHSDD 77
E+P C ECG++F K L H H DD
Sbjct: 10 EKPCKCTECGKAFCWKSQLIMHQRTHVDD 38
>pdb|2EOV|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
519- 551) Of Human Zinc Finger Protein 484
Length = 46
Score = 28.1 bits (61), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 18/29 (62%)
Query: 49 ERPFVCHECGQSFASKGILQEHLTIHSDD 77
E+P+ C +CG+SF K L+ H H+ +
Sbjct: 10 EKPYKCSDCGKSFTWKSRLRIHQKCHTGE 38
>pdb|1YDE|A Chain A, Crystal Structure Of Human Retinal Short-Chain
DehydrogenaseREDUCTASE 3
pdb|1YDE|B Chain B, Crystal Structure Of Human Retinal Short-Chain
DehydrogenaseREDUCTASE 3
pdb|1YDE|C Chain C, Crystal Structure Of Human Retinal Short-Chain
DehydrogenaseREDUCTASE 3
pdb|1YDE|D Chain D, Crystal Structure Of Human Retinal Short-Chain
DehydrogenaseREDUCTASE 3
pdb|1YDE|E Chain E, Crystal Structure Of Human Retinal Short-Chain
DehydrogenaseREDUCTASE 3
pdb|1YDE|F Chain F, Crystal Structure Of Human Retinal Short-Chain
DehydrogenaseREDUCTASE 3
pdb|1YDE|G Chain G, Crystal Structure Of Human Retinal Short-Chain
DehydrogenaseREDUCTASE 3
pdb|1YDE|H Chain H, Crystal Structure Of Human Retinal Short-Chain
DehydrogenaseREDUCTASE 3
pdb|1YDE|I Chain I, Crystal Structure Of Human Retinal Short-Chain
DehydrogenaseREDUCTASE 3
pdb|1YDE|J Chain J, Crystal Structure Of Human Retinal Short-Chain
DehydrogenaseREDUCTASE 3
pdb|1YDE|K Chain K, Crystal Structure Of Human Retinal Short-Chain
DehydrogenaseREDUCTASE 3
pdb|1YDE|L Chain L, Crystal Structure Of Human Retinal Short-Chain
DehydrogenaseREDUCTASE 3
pdb|1YDE|M Chain M, Crystal Structure Of Human Retinal Short-Chain
DehydrogenaseREDUCTASE 3
pdb|1YDE|N Chain N, Crystal Structure Of Human Retinal Short-Chain
DehydrogenaseREDUCTASE 3
pdb|1YDE|O Chain O, Crystal Structure Of Human Retinal Short-Chain
DehydrogenaseREDUCTASE 3
pdb|1YDE|P Chain P, Crystal Structure Of Human Retinal Short-Chain
DehydrogenaseREDUCTASE 3
Length = 270
Score = 28.1 bits (61), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 21/36 (58%)
Query: 17 ASTLGKYSLALMVTRFSSRSAVTAHTKAVHLGERPF 52
+S +G A V +++ AVTA TKA+ L E P+
Sbjct: 140 SSLVGAIGQAQAVPYVATKGAVTAMTKALALDESPY 175
>pdb|2EOL|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
581- 609) Of Human Zinc Finger Protein 268
Length = 42
Score = 28.1 bits (61), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 19/31 (61%)
Query: 48 GERPFVCHECGQSFASKGILQEHLTIHSDDA 78
GE+P+ C +CG++F K L H H+ ++
Sbjct: 7 GEKPYECTDCGKAFGLKSQLIIHQRTHTGES 37
>pdb|2ZSJ|A Chain A, Crystal Structure Of Threonine Synthase From Aquifex
Aeolicus Vf5
pdb|2ZSJ|B Chain B, Crystal Structure Of Threonine Synthase From Aquifex
Aeolicus Vf5
pdb|2ZSJ|C Chain C, Crystal Structure Of Threonine Synthase From Aquifex
Aeolicus Vf5
pdb|2ZSJ|D Chain D, Crystal Structure Of Threonine Synthase From Aquifex
Aeolicus Vf5
Length = 352
Score = 28.1 bits (61), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 22/51 (43%), Gaps = 1/51 (1%)
Query: 10 RAAGFRNASTLGKYSLALMVTRFSSRSAVTAHTKAVHLGERPFVCHECGQS 60
RA GF+ L KY F R A +KAV G+R +C G +
Sbjct: 41 RAIGFKGKIYL-KYEGLNPTGSFKDRGMTLAISKAVEAGKRAVICASTGNT 90
>pdb|3IYL|X Chain X, Atomic Cryoem Structure Of A Nonenveloped Virus Suggests
How Penetration Protein Is Primed For Cell Entry
pdb|3IYL|Y Chain Y, Atomic Cryoem Structure Of A Nonenveloped Virus Suggests
How Penetration Protein Is Primed For Cell Entry
Length = 1214
Score = 27.7 bits (60), Expect = 3.0, Method: Composition-based stats.
Identities = 12/28 (42%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Query: 52 FVCHECGQSFASKGILQEHL-TIHSDDA 78
+VC+ C F++ L EHL + H DDA
Sbjct: 117 YVCNVCNARFSTMSALSEHLRSDHRDDA 144
>pdb|3K1Q|C Chain C, Backbone Model Of An Aquareovirus Virion By Cryo-Electron
Microscopy And Bioinformatics
Length = 1196
Score = 27.7 bits (60), Expect = 3.0, Method: Composition-based stats.
Identities = 12/28 (42%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Query: 52 FVCHECGQSFASKGILQEHL-TIHSDDA 78
+VC+ C F++ L EHL + H DDA
Sbjct: 99 YVCNVCNARFSTMSALSEHLRSDHRDDA 126
>pdb|2EOF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
411- 441) Of Human Zinc Finger Protein 268
Length = 44
Score = 27.7 bits (60), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 10/30 (33%), Positives = 19/30 (63%)
Query: 49 ERPFVCHECGQSFASKGILQEHLTIHSDDA 78
E+P+ C+EC ++F +K L H H+ ++
Sbjct: 10 EKPYECNECQKAFNTKSNLMVHQRTHTGES 39
>pdb|2EMV|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
859- 889) Of Human Zinc Finger Protein 268
Length = 44
Score = 27.3 bits (59), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 17/30 (56%)
Query: 49 ERPFVCHECGQSFASKGILQEHLTIHSDDA 78
E+P+ C ECG++F L H HS ++
Sbjct: 10 EKPYECSECGKAFIRNSQLIVHQRTHSGES 39
>pdb|2ENH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
556- 588) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 26.9 bits (58), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 10/31 (32%), Positives = 18/31 (58%)
Query: 49 ERPFVCHECGQSFASKGILQEHLTIHSDDAP 79
E+P+ C C ++F+ L +H +HS + P
Sbjct: 10 EKPYECDVCRKAFSHHASLTQHQRVHSGEKP 40
>pdb|2CT1|A Chain A, Solution Structure Of The Zinc Finger Domain Of
Transcriptional Repressor Ctcf Protein
Length = 77
Score = 26.9 bits (58), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Query: 45 VHLGERPFVCHECGQSFASKGILQEH-LTIHSDD-APWKCDIC 85
H GE+P+ C+ C F G ++ H L H+++ A + C C
Sbjct: 9 THSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHC 51
>pdb|2EOJ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
355- 385) Of Human Zinc Finger Protein 268
Length = 44
Score = 26.9 bits (58), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 15/27 (55%)
Query: 49 ERPFVCHECGQSFASKGILQEHLTIHS 75
E P+ C ECG+ F+ K L H HS
Sbjct: 10 ENPYECCECGKVFSRKDQLVSHQKTHS 36
>pdb|2EOH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
780- 812) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 26.6 bits (57), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 9/29 (31%), Positives = 18/29 (62%)
Query: 49 ERPFVCHECGQSFASKGILQEHLTIHSDD 77
++P+ C EC ++F G L +H +H+ +
Sbjct: 10 KKPYECKECRKTFIQIGHLNQHKRVHTGE 38
>pdb|2YTO|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (region
659- 691) Of Human Zinc Finger Protein 484
Length = 46
Score = 26.6 bits (57), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 10/29 (34%), Positives = 17/29 (58%)
Query: 49 ERPFVCHECGQSFASKGILQEHLTIHSDD 77
E+P+ C +CG++F K L H H+ +
Sbjct: 10 EKPYKCSDCGKAFTRKSGLHIHQQSHTGE 38
>pdb|2ELS|A Chain A, Solution Structure Of The 2nd C2h2 Zinc Finger Of Human
Zinc Finger Protein 406
Length = 36
Score = 26.6 bits (57), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 50 RPFVCHECGQSFASKGILQEHLTIHSDD 77
+ F C C + F K LQ HL IH+++
Sbjct: 8 KIFTCEYCNKVFKFKHSLQAHLRIHTNE 35
>pdb|2JSP|A Chain A, The Prokaryotic Cys2his2 Zinc Finger Adopts A Novel Fold
As Revealed By The Nmr Structure Of A. Tumefaciens Ros
Dna Binding Domain
Length = 87
Score = 26.6 bits (57), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 15/28 (53%), Gaps = 3/28 (10%)
Query: 52 FVCHECGQSFASKGILQEHLTIHSDDAP 79
VC ECG SF S L+ HLT H P
Sbjct: 22 IVCLECGGSFKS---LKRHLTTHHSMTP 46
>pdb|2EM6|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
199- 231) Of Human Zinc Finger Protein 224
Length = 46
Score = 26.2 bits (56), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 10/31 (32%), Positives = 17/31 (54%)
Query: 49 ERPFVCHECGQSFASKGILQEHLTIHSDDAP 79
E+ + C CG+ F+ LQ H +H+ + P
Sbjct: 10 EKCYKCDVCGKEFSQSSHLQTHQRVHTGEKP 40
>pdb|2M0D|A Chain A, Solution Structure Of Miz-1 Zinc Finger 5
Length = 30
Score = 26.2 bits (56), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 14/28 (50%)
Query: 50 RPFVCHECGQSFASKGILQEHLTIHSDD 77
+P+ C CG+SF+ HL H D
Sbjct: 2 KPYQCDYCGRSFSDPTSKMRHLETHDTD 29
>pdb|2ELX|A Chain A, Solution Structure Of The 8th C2h2 Zinc Finger Of Mouse
Zinc Finger Protein 406
Length = 35
Score = 26.2 bits (56), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 10/29 (34%), Positives = 14/29 (48%)
Query: 115 TGKRPYTCPWCSRTFANGSNCRSHKRRMH 143
+G Y C C + F + RSH R +H
Sbjct: 3 SGSSGYVCALCLKKFVSSIRLRSHIREVH 31
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.133 0.432
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,971,011
Number of Sequences: 62578
Number of extensions: 186261
Number of successful extensions: 1000
Number of sequences better than 100.0: 178
Number of HSP's better than 100.0 without gapping: 166
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 491
Number of HSP's gapped (non-prelim): 441
length of query: 166
length of database: 14,973,337
effective HSP length: 92
effective length of query: 74
effective length of database: 9,216,161
effective search space: 681995914
effective search space used: 681995914
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.7 bits)