RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy16925
(166 letters)
>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human
(Homo sapiens) [TaxId: 9606]}
Length = 36
Score = 45.7 bits (109), Expect = 2e-08
Identities = 10/34 (29%), Positives = 16/34 (47%)
Query: 114 HTGKRPYTCPWCSRTFANGSNCRSHKRRMHPEEL 147
H+G++PY C C F + H + H E +
Sbjct: 3 HSGEKPYECYICHARFTQSGTMKMHILQKHTENV 36
Score = 39.6 bits (93), Expect = 4e-06
Identities = 11/34 (32%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Query: 45 VHLGERPFVCHECGQSFASKGILQEH-LTIHSDD 77
H GE+P+ C+ C F G ++ H L H+++
Sbjct: 2 THSGEKPYECYICHARFTQSGTMKMHILQKHTEN 35
>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 33
Score = 43.0 bits (102), Expect = 2e-07
Identities = 13/31 (41%), Positives = 22/31 (70%)
Query: 45 VHLGERPFVCHECGQSFASKGILQEHLTIHS 75
+H GE+P+ C ECG++F+ IL +H +H+
Sbjct: 1 IHSGEKPYGCVECGKAFSRSSILVQHQRVHT 31
Score = 36.4 bits (85), Expect = 5e-05
Identities = 10/27 (37%), Positives = 16/27 (59%)
Query: 114 HTGKRPYTCPWCSRTFANGSNCRSHKR 140
H+G++PY C C + F+ S H+R
Sbjct: 2 HSGEKPYGCVECGKAFSRSSILVQHQR 28
Score = 26.4 bits (59), Expect = 0.21
Identities = 13/44 (29%), Positives = 17/44 (38%), Gaps = 12/44 (27%)
Query: 73 IHSDDAPWKCDICSKKSLKLSNVSCGWYPDESKDLKNHHNLHTG 116
IHS + P+ C C K + S L H +HTG
Sbjct: 1 IHSGEKPYGCVECGKAFSRSSI------------LVQHQRVHTG 32
>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human
(Homo sapiens) [TaxId: 9606]}
Length = 36
Score = 42.4 bits (100), Expect = 4e-07
Identities = 11/32 (34%), Positives = 17/32 (53%)
Query: 45 VHLGERPFVCHECGQSFASKGILQEHLTIHSD 76
H GE+P+ C C ++F K +L H + D
Sbjct: 2 THTGEKPYACSHCDKTFRQKQLLDMHFKRYHD 33
Score = 37.0 bits (86), Expect = 4e-05
Identities = 12/32 (37%), Positives = 16/32 (50%)
Query: 114 HTGKRPYTCPWCSRTFANGSNCRSHKRRMHPE 145
HTG++PY C C +TF H +R H
Sbjct: 3 HTGEKPYACSHCDKTFRQKQLLDMHFKRYHDP 34
Score = 22.7 bits (49), Expect = 4.9
Identities = 7/45 (15%), Positives = 12/45 (26%), Gaps = 12/45 (26%)
Query: 73 IHSDDAPWKCDICSKKSLKLSNVSCGWYPDESKDLKNHHNLHTGK 117
H+ + P+ C C K + L H +
Sbjct: 2 THTGEKPYACSHCDKTFRQKQL------------LDMHFKRYHDP 34
>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId:
9606]}
Length = 39
Score = 41.1 bits (97), Expect = 1e-06
Identities = 11/37 (29%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Query: 49 ERPFVCHECGQSFASKGILQEHL-TIHSDDAPWKCDI 84
+P++C CG+ F+ L H+ +H+ + P KC +
Sbjct: 3 GKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQV 39
Score = 34.2 bits (79), Expect = 5e-04
Identities = 8/32 (25%), Positives = 16/32 (50%)
Query: 115 TGKRPYTCPWCSRTFANGSNCRSHKRRMHPEE 146
+ +PY C C + F+ + H +++H E
Sbjct: 1 SVGKPYICQSCGKGFSRPDHLNGHIKQVHTSE 32
Score = 31.1 bits (71), Expect = 0.006
Identities = 10/25 (40%), Positives = 11/25 (44%)
Query: 31 RFSSRSAVTAHTKAVHLGERPFVCH 55
FS + H K VH ERP C
Sbjct: 14 GFSRPDHLNGHIKQVHTSERPHKCQ 38
>d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 35
Score = 38.2 bits (89), Expect = 1e-05
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 46 HLGERPFVCHECGQSFASKGILQEHLTIHSD 76
G+RPFVC C +F +K HL +H+D
Sbjct: 2 SSGKRPFVCRICLSAFTTKANCARHLKVHTD 32
Score = 32.0 bits (73), Expect = 0.003
Identities = 12/34 (35%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Query: 114 HTGKRPYTCPWCSRTFANGSNCRSHKRRMHPEEL 147
+GKRP+ C C F +NC H ++H + L
Sbjct: 2 SSGKRPFVCRICLSAFTTKANCARHL-KVHTDTL 34
>d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing
protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId:
9606]}
Length = 38
Score = 37.4 bits (87), Expect = 3e-05
Identities = 10/36 (27%), Positives = 17/36 (47%)
Query: 40 AHTKAVHLGERPFVCHECGQSFASKGILQEHLTIHS 75
++ R + C ECG+SF+ L +H H+
Sbjct: 1 GRSEWQQRERRRYKCDECGKSFSHSSDLSKHRRTHT 36
Score = 35.1 bits (81), Expect = 2e-04
Identities = 8/31 (25%), Positives = 15/31 (48%)
Query: 110 HHNLHTGKRPYTCPWCSRTFANGSNCRSHKR 140
+R Y C C ++F++ S+ H+R
Sbjct: 3 SEWQQRERRRYKCDECGKSFSHSSDLSKHRR 33
Score = 24.4 bits (53), Expect = 1.6
Identities = 12/47 (25%), Positives = 14/47 (29%), Gaps = 12/47 (25%)
Query: 70 HLTIHSDDAPWKCDICSKKSLKLSNVSCGWYPDESKDLKNHHNLHTG 116
+ +KCD C G S DL H HTG
Sbjct: 3 SEWQQRERRRYKCDEC------------GKSFSHSSDLSKHRRTHTG 37
>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 37
Score = 37.0 bits (86), Expect = 4e-05
Identities = 11/34 (32%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Query: 41 HTKAVHLGERPFVCHECGQSFASKGILQEHLTIH 74
T+ G +PF C +C +SF+ L H H
Sbjct: 2 STR-GSTGIKPFQCPDCDRSFSRSDHLALHRKRH 34
Score = 34.7 bits (80), Expect = 2e-04
Identities = 9/31 (29%), Positives = 16/31 (51%)
Query: 110 HHNLHTGKRPYTCPWCSRTFANGSNCRSHKR 140
TG +P+ CP C R+F+ + H++
Sbjct: 2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRK 32
>d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 28
Score = 36.0 bits (84), Expect = 8e-05
Identities = 8/27 (29%), Positives = 15/27 (55%)
Query: 49 ERPFVCHECGQSFASKGILQEHLTIHS 75
++PF C C ++F+ L H+ H+
Sbjct: 1 QKPFQCRICMRNFSRSDHLTTHIRTHT 27
Score = 28.0 bits (63), Expect = 0.055
Identities = 7/23 (30%), Positives = 12/23 (52%)
Query: 118 RPYTCPWCSRTFANGSNCRSHKR 140
+P+ C C R F+ + +H R
Sbjct: 2 KPFQCRICMRNFSRSDHLTTHIR 24
>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo
sapiens) [TaxId: 9606]}
Length = 53
Score = 36.2 bits (83), Expect = 1e-04
Identities = 13/46 (28%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Query: 49 ERPFVCHECGQSFASKGILQEHLTIHSDDAPWKCDICSKKSLKLSN 94
++ + C +CG+SF K H+++H P+ C +C KK +
Sbjct: 1 DKLYPC-QCGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHH 45
Score = 28.5 bits (63), Expect = 0.068
Identities = 12/44 (27%), Positives = 17/44 (38%)
Query: 97 CGWYPDESKDLKNHHNLHTGKRPYTCPWCSRTFANGSNCRSHKR 140
CG H ++H G RPY C C + F + H +
Sbjct: 8 CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMK 51
>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on
Saccharomyces cerevisiae sequence}
Length = 29
Score = 33.8 bits (78), Expect = 4e-04
Identities = 10/26 (38%), Positives = 15/26 (57%)
Query: 50 RPFVCHECGQSFASKGILQEHLTIHS 75
R FVC C ++FA + L+ H H+
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRSHT 26
Score = 28.7 bits (65), Expect = 0.038
Identities = 8/23 (34%), Positives = 12/23 (52%)
Query: 118 RPYTCPWCSRTFANGSNCRSHKR 140
R + C C+R FA + + H R
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYR 23
Score = 22.2 bits (48), Expect = 8.5
Identities = 7/40 (17%), Positives = 17/40 (42%), Gaps = 12/40 (30%)
Query: 79 PWKCDICSKKSLKLSNVSCGWYPDESKDLKNHHNLHTGKR 118
+ C++C++ + + LK H+ HT ++
Sbjct: 2 SFVCEVCTRAFARQEH------------LKRHYRSHTNEK 29
>d2dlka2 g.37.1.1 (A:38-73) Zinc finger protein 692, ZNF692 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 36
Score = 32.8 bits (75), Expect = 0.001
Identities = 15/34 (44%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
Query: 52 FVCHE--CGQSFASKGILQEHLTIHSDDAPWKCD 83
F C E CG+SF K L+EH+ +HSD + C+
Sbjct: 2 FSCPEPACGKSFNFKKHLKEHMKLHSDTRDYICE 35
Score = 29.7 bits (67), Expect = 0.016
Identities = 11/28 (39%), Positives = 14/28 (50%)
Query: 97 CGWYPDESKDLKNHHNLHTGKRPYTCPW 124
CG + K LK H LH+ R Y C +
Sbjct: 9 CGKSFNFKKHLKEHMKLHSDTRDYICEF 36
Score = 25.8 bits (57), Expect = 0.39
Identities = 6/24 (25%), Positives = 12/24 (50%), Gaps = 1/24 (4%)
Query: 31 RFSSRSAVTAHTKAVHLGERPFVC 54
F+ + + H K +H R ++C
Sbjct: 12 SFNFKKHLKEHMK-LHSDTRDYIC 34
Score = 22.8 bits (49), Expect = 6.4
Identities = 5/23 (21%), Positives = 12/23 (52%), Gaps = 2/23 (8%)
Query: 120 YTCPW--CSRTFANGSNCRSHKR 140
++CP C ++F + + H +
Sbjct: 2 FSCPEPACGKSFNFKKHLKEHMK 24
>d1x6ea2 g.37.1.1 (A:41-66) Zinc finger protein 24 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 26
Score = 31.8 bits (73), Expect = 0.002
Identities = 10/26 (38%), Positives = 16/26 (61%)
Query: 50 RPFVCHECGQSFASKGILQEHLTIHS 75
+P+ C ECG++F+ L H IH+
Sbjct: 1 KPYKCLECGKAFSQNSGLINHQRIHT 26
Score = 26.0 bits (58), Expect = 0.31
Identities = 8/23 (34%), Positives = 13/23 (56%)
Query: 118 RPYTCPWCSRTFANGSNCRSHKR 140
+PY C C + F+ S +H+R
Sbjct: 1 KPYKCLECGKAFSQNSGLINHQR 23
>d1sp1a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 29
Score = 31.5 bits (72), Expect = 0.003
Identities = 8/26 (30%), Positives = 12/26 (46%)
Query: 50 RPFVCHECGQSFASKGILQEHLTIHS 75
+ F C EC + F L +H+ H
Sbjct: 1 KKFACPECPKRFMRSDHLSKHIKTHQ 26
Score = 26.9 bits (60), Expect = 0.14
Identities = 5/23 (21%), Positives = 10/23 (43%)
Query: 118 RPYTCPWCSRTFANGSNCRSHKR 140
+ + CP C + F + H +
Sbjct: 1 KKFACPECPKRFMRSDHLSKHIK 23
Score = 22.3 bits (48), Expect = 7.5
Identities = 7/40 (17%), Positives = 13/40 (32%), Gaps = 12/40 (30%)
Query: 79 PWKCDICSKKSLKLSNVSCGWYPDESKDLKNHHNLHTGKR 118
+ C C K+ ++ + L H H K+
Sbjct: 2 KFACPECPKRFMRSDH------------LSKHIKTHQNKK 29
>d1ncsa_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 47
Score = 30.7 bits (69), Expect = 0.009
Identities = 7/38 (18%), Positives = 16/38 (42%), Gaps = 2/38 (5%)
Query: 105 KDLKNHHNLHTGKRPYTCPWC--SRTFANGSNCRSHKR 140
+ + + + + C + ++TF N RSH +
Sbjct: 4 RGSIDKYVKEMPDKTFECLFPGCTKTFKRRYNIRSHIQ 41
Score = 29.1 bits (65), Expect = 0.037
Identities = 5/32 (15%), Positives = 14/32 (43%), Gaps = 2/32 (6%)
Query: 46 HLGERPFVCHEC--GQSFASKGILQEHLTIHS 75
+ ++ F C ++F + ++ H+ H
Sbjct: 13 EMPDKTFECLFPGCTKTFKRRYNIRSHIQTHL 44
Score = 23.4 bits (50), Expect = 4.2
Identities = 7/55 (12%), Positives = 18/55 (32%), Gaps = 11/55 (20%)
Query: 64 KGILQEHLTIHSDDAPWKCDICSKKSLKLSNVSCGWYPDESKDLKNHHNLHTGKR 118
+G + +++ D ++C C ++++H H R
Sbjct: 4 RGSIDKYV-KEMPDKTFECLFPG----------CTKTFKRRYNIRSHIQTHLEDR 47
>d1zfda_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 32
Score = 30.0 bits (68), Expect = 0.013
Identities = 8/29 (27%), Positives = 12/29 (41%), Gaps = 2/29 (6%)
Query: 49 ERPFVCHE--CGQSFASKGILQEHLTIHS 75
+RP+ C C ++F L H H
Sbjct: 1 DRPYSCDHPGCDKAFVRNHDLIRHKKSHQ 29
Score = 26.5 bits (59), Expect = 0.24
Identities = 8/25 (32%), Positives = 12/25 (48%), Gaps = 2/25 (8%)
Query: 118 RPYTCPW--CSRTFANGSNCRSHKR 140
RPY+C C + F + HK+
Sbjct: 2 RPYSCDHPGCDKAFVRNHDLIRHKK 26
>d1sp2a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 31
Score = 29.2 bits (66), Expect = 0.022
Identities = 11/28 (39%), Positives = 14/28 (50%), Gaps = 2/28 (7%)
Query: 50 RPFVCH--ECGQSFASKGILQEHLTIHS 75
RPF+C CG+ F LQ H H+
Sbjct: 1 RPFMCTWSYCGKRFTRSDELQRHKRTHT 28
Score = 25.4 bits (56), Expect = 0.53
Identities = 9/25 (36%), Positives = 12/25 (48%), Gaps = 2/25 (8%)
Query: 118 RPYTCPW--CSRTFANGSNCRSHKR 140
RP+ C W C + F + HKR
Sbjct: 1 RPFMCTWSYCGKRFTRSDELQRHKR 25
>d2glia4 g.37.1.1 (A:198-228) Five-finger GLI1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 31
Score = 29.1 bits (65), Expect = 0.025
Identities = 12/31 (38%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
Query: 118 RPYTC--PWCSRTFANGSNCRSHKRRMHPEE 146
+PY C CS+ F+N S+ H+ R H E
Sbjct: 1 KPYMCEHEGCSKAFSNASDRAKHQNRTHSNE 31
>d2glia3 g.37.1.1 (A:168-197) Five-finger GLI1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 30
Score = 29.2 bits (66), Expect = 0.026
Identities = 8/28 (28%), Positives = 14/28 (50%), Gaps = 2/28 (7%)
Query: 50 RPFVCHE--CGQSFASKGILQEHLTIHS 75
+P C C +S++ L+ HL H+
Sbjct: 1 KPHKCTFEGCRKSYSRLENLKTHLRSHT 28
Score = 25.4 bits (56), Expect = 0.53
Identities = 6/25 (24%), Positives = 15/25 (60%), Gaps = 2/25 (8%)
Query: 118 RPYTCPW--CSRTFANGSNCRSHKR 140
+P+ C + C ++++ N ++H R
Sbjct: 1 KPHKCTFEGCRKSYSRLENLKTHLR 25
>d1ubdc4 g.37.1.1 (C:381-408) Ying-yang 1 (yy1, zinc finger domain)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 28
Score = 28.5 bits (64), Expect = 0.048
Identities = 11/25 (44%), Positives = 16/25 (64%), Gaps = 2/25 (8%)
Query: 118 RPYTCPW--CSRTFANGSNCRSHKR 140
RPY CP+ C++ FA +N +SH
Sbjct: 1 RPYVCPFDGCNKKFAQSTNLKSHIL 25
Score = 26.9 bits (60), Expect = 0.15
Identities = 10/28 (35%), Positives = 15/28 (53%), Gaps = 2/28 (7%)
Query: 50 RPFVCHE--CGQSFASKGILQEHLTIHS 75
RP+VC C + FA L+ H+ H+
Sbjct: 1 RPYVCPFDGCNKKFAQSTNLKSHILTHA 28
>d1a1ia1 g.37.1.1 (A:103-131) ZIF268 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 29
Score = 28.1 bits (63), Expect = 0.052
Identities = 9/28 (32%), Positives = 14/28 (50%), Gaps = 2/28 (7%)
Query: 50 RPFVCHE--CGQSFASKGILQEHLTIHS 75
RP+ C C + F+ L H+ IH+
Sbjct: 1 RPYACPVESCDRRFSRSADLTRHIRIHT 28
Score = 25.4 bits (56), Expect = 0.58
Identities = 10/25 (40%), Positives = 13/25 (52%), Gaps = 2/25 (8%)
Query: 118 RPYTCPW--CSRTFANGSNCRSHKR 140
RPY CP C R F+ ++ H R
Sbjct: 1 RPYACPVESCDRRFSRSADLTRHIR 25
>d1ubdc3 g.37.1.1 (C:351-380) Ying-yang 1 (yy1, zinc finger
domain) {Human (Homo sapiens) [TaxId: 9606]}
Length = 30
Score = 27.7 bits (62), Expect = 0.074
Identities = 10/28 (35%), Positives = 16/28 (57%), Gaps = 2/28 (7%)
Query: 50 RPFVCHE--CGQSFASKGILQEHLTIHS 75
+PF C CG+ F+ L+ H+ IH+
Sbjct: 1 KPFQCTFEGCGKRFSLDFNLRTHVRIHT 28
>d1a1ia3 g.37.1.1 (A:160-187) ZIF268 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 28
Score = 27.1 bits (60), Expect = 0.13
Identities = 11/26 (42%), Positives = 14/26 (53%)
Query: 49 ERPFVCHECGQSFASKGILQEHLTIH 74
E+PF C CG+ FA + H IH
Sbjct: 1 EKPFACDICGRKFARSDERKRHTKIH 26
Score = 25.2 bits (55), Expect = 0.64
Identities = 10/27 (37%), Positives = 15/27 (55%), Gaps = 5/27 (18%)
Query: 117 KRPYTCPWCSRTFANGSNCRSHKRRMH 143
++P+ C C R FA RS +R+ H
Sbjct: 1 EKPFACDICGRKFA-----RSDERKRH 22
>d1pfva3 g.41.1.1 (A:141-175) Methionyl-tRNA synthetase (MetRS),
Zn-domain {Escherichia coli [TaxId: 562]}
Length = 35
Score = 26.2 bits (58), Expect = 0.35
Identities = 10/28 (35%), Positives = 10/28 (35%)
Query: 121 TCPWCSRTFANGSNCRSHKRRMHPEELK 148
TCP C G NC P EL
Sbjct: 4 TCPKCKSPDQYGDNCEVCGATYSPTELI 31
>d1twfb_ e.29.1.1 (B:) RBP2 {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 1207
Score = 28.7 bits (63), Expect = 0.35
Identities = 13/57 (22%), Positives = 19/57 (33%), Gaps = 2/57 (3%)
Query: 66 ILQEHLTIHSDDAPWKCDICSKKSLKLSNVSCGWYPDESKDLKNHHNLHTGKRPYTC 122
L+E L SD ++ IC L E K N +++ PY
Sbjct: 1129 FLKERLMEASD--AFRVHICGICGLMTVIAKLNHNQFECKGCDNKIDIYQIHIPYAA 1183
>d1klra_ g.37.1.1 (A:) ZFY {Human (Homo sapiens) [TaxId: 9606]}
Length = 30
Score = 25.5 bits (55), Expect = 0.49
Identities = 9/29 (31%), Positives = 16/29 (55%)
Query: 118 RPYTCPWCSRTFANGSNCRSHKRRMHPEE 146
+ Y C +C A+ SN ++H + H +E
Sbjct: 1 KTYQCQYCEFRSADSSNLKTHIKTKHSKE 29
>d1ubdc2 g.37.1.1 (C:323-350) Ying-yang 1 (yy1, zinc finger
domain) {Human (Homo sapiens) [TaxId: 9606]}
Length = 28
Score = 25.4 bits (55), Expect = 0.49
Identities = 10/26 (38%), Positives = 15/26 (57%)
Query: 50 RPFVCHECGQSFASKGILQEHLTIHS 75
R VC ECG++F L+ H +H+
Sbjct: 1 RVHVCAECGKAFVESSKLKRHQLVHT 26
>d2adra2 g.37.1.1 (A:131-161) ADR1 {Synthetic, based on
Saccharomyces cerevisiae sequence}
Length = 31
Score = 25.2 bits (55), Expect = 0.77
Identities = 6/20 (30%), Positives = 11/20 (55%)
Query: 51 PFVCHECGQSFASKGILQEH 70
P+ C C ++F + +L H
Sbjct: 1 PYPCGLCNRAFTRRDLLIRH 20
Score = 23.6 bits (51), Expect = 2.1
Identities = 8/25 (32%), Positives = 12/25 (48%)
Query: 119 PYTCPWCSRTFANGSNCRSHKRRMH 143
PY C C+R F H +++H
Sbjct: 1 PYPCGLCNRAFTRRDLLIRHAQKIH 25
>d2epqa1 g.37.1.1 (A:380-411) PATZ1 {Human (Homo sapiens) [TaxId:
9606]}
Length = 32
Score = 25.0 bits (54), Expect = 0.85
Identities = 9/26 (34%), Positives = 13/26 (50%)
Query: 49 ERPFVCHECGQSFASKGILQEHLTIH 74
E+P+ C CG F K + H+ H
Sbjct: 1 EKPYSCPVCGLRFKRKDRMSYHVRSH 26
>d2ct5a1 g.37.1.6 (A:8-67) Zinc finger BED domain-containing protein
1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 60
Score = 25.3 bits (55), Expect = 1.2
Identities = 11/31 (35%), Positives = 12/31 (38%), Gaps = 3/31 (9%)
Query: 121 TCPWCSRTFA---NGSNCRSHKRRMHPEELK 148
C C A N SN H + HPEE
Sbjct: 24 YCRICMAQIAYSGNTSNLSYHLEKNHPEEFC 54
>d2dmda1 g.37.1.1 (A:34-61) Zinc finger protein 64, ZFP68 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 28
Score = 24.3 bits (52), Expect = 1.2
Identities = 11/27 (40%), Positives = 15/27 (55%)
Query: 50 RPFVCHECGQSFASKGILQEHLTIHSD 76
+P+ C C + A L +HL IHSD
Sbjct: 2 KPYKCKTCDYAAADSSSLNKHLRIHSD 28
>d1bboa1 g.37.1.1 (A:1-28) Enhancer binding protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 28
Score = 24.4 bits (53), Expect = 1.2
Identities = 8/26 (30%), Positives = 15/26 (57%)
Query: 52 FVCHECGQSFASKGILQEHLTIHSDD 77
++C ECG +L++H+ H+D
Sbjct: 2 YICEECGIRAKKPSMLKKHIRTHTDV 27
>d1zbdb_ g.50.1.1 (B:) Effector domain of rabphilin-3a {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 124
Score = 25.8 bits (56), Expect = 1.8
Identities = 12/54 (22%), Positives = 21/54 (38%), Gaps = 3/54 (5%)
Query: 47 LGERPFVCHECGQSFASKGILQEHLTIHSDDAPWKCDICSKKSLKLSNVSCGWY 100
LG VC +C ++ +K + + W C IC ++ S W+
Sbjct: 61 LGSASVVCEDCKKNVCTK--CGVETSNNRPHPVWLCKICLEQREVWKR-SGAWF 111
>d1rqga3 g.41.1.1 (A:139-173) Methionyl-tRNA synthetase (MetRS),
Zn-domain {Pyrococcus abyssi [TaxId: 29292]}
Length = 35
Score = 23.8 bits (52), Expect = 2.3
Identities = 10/28 (35%), Positives = 12/28 (42%)
Query: 121 TCPWCSRTFANGSNCRSHKRRMHPEELK 148
TCP+C G C R + PE L
Sbjct: 4 TCPYCGAEDQKGDQCEVCGRPLTPEILI 31
>d2dlqa1 g.37.1.1 (A:93-118) GLI-Krueppel family member HKR3 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 26
Score = 23.2 bits (49), Expect = 2.9
Identities = 9/25 (36%), Positives = 14/25 (56%)
Query: 119 PYTCPWCSRTFANGSNCRSHKRRMH 143
PY C CS+ F + +SH ++H
Sbjct: 2 PYKCSSCSQQFMQKKDLQSHMIKLH 26
Score = 22.8 bits (48), Expect = 4.6
Identities = 9/21 (42%), Positives = 11/21 (52%)
Query: 51 PFVCHECGQSFASKGILQEHL 71
P+ C C Q F K LQ H+
Sbjct: 2 PYKCSSCSQQFMQKKDLQSHM 22
>d1bhia_ g.37.1.1 (A:) Transactivation domain of cre-bp1/atf-2
{Human (Homo sapiens) [TaxId: 9606]}
Length = 38
Score = 23.3 bits (50), Expect = 3.6
Identities = 11/34 (32%), Positives = 16/34 (47%), Gaps = 3/34 (8%)
Query: 118 RPYTC--PWCSRTFANGSNCRSHKRRMHPEELKL 149
+P+ C P C + F N + HK + H LK
Sbjct: 5 KPFLCTAPGCGQRFTNEDHLAVHKHK-HEMTLKF 37
>d2ct1a1 g.37.1.1 (A:44-71) Transcriptional repressor CTCF {Human
(Homo sapiens) [TaxId: 9606]}
Length = 28
Score = 23.1 bits (49), Expect = 3.7
Identities = 8/24 (33%), Positives = 11/24 (45%)
Query: 120 YTCPWCSRTFANGSNCRSHKRRMH 143
+ CP C A S+ H R+ H
Sbjct: 3 FHCPHCDTVIARKSDLGVHLRKQH 26
>d2drpa2 g.37.1.1 (A:140-165) Tramtrack protein (two zinc-finger
peptide) {Drosophila melanogaster [TaxId: 7227]}
Length = 26
Score = 23.1 bits (49), Expect = 3.7
Identities = 8/24 (33%), Positives = 13/24 (54%)
Query: 120 YTCPWCSRTFANGSNCRSHKRRMH 143
Y CP+C + F N +H + +H
Sbjct: 2 YPCPFCFKEFTRKDNMTAHVKIIH 25
>d1njqa_ g.37.1.3 (A:) SUPERMAN zinc finger domain {Thale cress
(Arabidopsis thaliana) [TaxId: 3702]}
Length = 37
Score = 23.1 bits (50), Expect = 4.1
Identities = 9/32 (28%), Positives = 13/32 (40%)
Query: 118 RPYTCPWCSRTFANGSNCRSHKRRMHPEELKL 149
R YTC +C R F + H + +L
Sbjct: 4 RSYTCSFCKREFRSAQALGGHMNVHRRDRARL 35
Score = 22.4 bits (48), Expect = 7.7
Identities = 9/28 (32%), Positives = 13/28 (46%)
Query: 50 RPFVCHECGQSFASKGILQEHLTIHSDD 77
R + C C + F S L H+ +H D
Sbjct: 4 RSYTCSFCKREFRSAQALGGHMNVHRRD 31
>d2epra1 g.37.1.1 (A:350-384) PATZ1 {Human (Homo sapiens) [TaxId:
9606]}
Length = 35
Score = 23.1 bits (49), Expect = 4.2
Identities = 9/27 (33%), Positives = 12/27 (44%)
Query: 54 CHECGQSFASKGILQEHLTIHSDDAPW 80
C CG+ F L H HS + P+
Sbjct: 8 CEICGKIFRDVYHLNRHKLSHSGEKPY 34
>d1x6ha1 g.37.1.1 (A:44-80) Transcriptional repressor CTCF {Human
(Homo sapiens) [TaxId: 9606]}
Length = 37
Score = 23.1 bits (49), Expect = 4.5
Identities = 7/19 (36%), Positives = 12/19 (63%)
Query: 52 FVCHECGQSFASKGILQEH 70
FVC +CG++F + + H
Sbjct: 5 FVCSKCGKTFTRRNTMARH 23
>d1yala_ d.3.1.1 (A:) Chymopapain {Papaya (Carica papaya) [TaxId:
3649]}
Length = 218
Score = 24.9 bits (53), Expect = 4.7
Identities = 6/80 (7%), Positives = 20/80 (25%), Gaps = 1/80 (1%)
Query: 60 SFASKGILQEHLTIHSDDAPWKC-DICSKKSLKLSNVSCGWYPDESKDLKNHHNLHTGKR 118
+F++ ++ I + + G+ + + N+ +
Sbjct: 27 AFSTIATVEGINKIVTGNLLELSEQELVDCDKHSYGCKGGYQTTSLQYVANNGVHTSKVY 86
Query: 119 PYTCPWCSRTFANGSNCRSH 138
PY + +
Sbjct: 87 PYQAKQYKCRATDKPGPKVK 106
>d1bboa2 g.37.1.1 (A:29-57) Enhancer binding protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 29
Score = 22.6 bits (48), Expect = 5.0
Identities = 9/21 (42%), Positives = 13/21 (61%)
Query: 51 PFVCHECGQSFASKGILQEHL 71
P+ C C SF +KG L +H+
Sbjct: 1 PYHCTYCNFSFKTKGNLTKHM 21
>d1g47a2 g.39.1.3 (A:36-70) Pinch (particularly interesting new
Cys-His) protein {Human (Homo sapiens) [TaxId: 9606]}
Length = 35
Score = 22.7 bits (49), Expect = 5.6
Identities = 6/14 (42%), Positives = 7/14 (50%)
Query: 52 FVCHECGQSFASKG 65
FVC +C Q F
Sbjct: 1 FVCAQCFQQFPEGL 14
>d1x5wa2 g.37.1.1 (A:36-64) Zinc finger protein 64, ZFP68 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 29
Score = 22.7 bits (48), Expect = 6.0
Identities = 9/26 (34%), Positives = 13/26 (50%)
Query: 118 RPYTCPWCSRTFANGSNCRSHKRRMH 143
RP+ C +CS SN H ++ H
Sbjct: 1 RPFKCNYCSFDTKQPSNLSKHMKKFH 26
>d1zr9a1 g.37.1.4 (A:28-94) Zinc finger protein 593, ZNF593 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 67
Score = 23.5 bits (51), Expect = 6.3
Identities = 5/20 (25%), Positives = 7/20 (35%)
Query: 52 FVCHECGQSFASKGILQEHL 71
C C + F L+ H
Sbjct: 16 HRCLACARYFIDSTNLKTHF 35
>d1yuza2 g.41.5.1 (A:167-202) Nigerythrin, C-terminal domain
{Desulfovibrio vulgaris [TaxId: 881]}
Length = 36
Score = 22.7 bits (49), Expect = 6.3
Identities = 9/37 (24%), Positives = 13/37 (35%), Gaps = 13/37 (35%)
Query: 49 ERPFVCHECGQSFASKGILQEHLTIHSDDAPWKCDIC 85
++ +C CG IH + KC IC
Sbjct: 3 DKFHLCPICGY-------------IHKGEDFEKCPIC 26
>d1yuja_ g.37.1.1 (A:) GAGA factor {Drosophila melanogaster [TaxId:
7227]}
Length = 54
Score = 23.2 bits (49), Expect = 6.7
Identities = 9/27 (33%), Positives = 11/27 (40%)
Query: 117 KRPYTCPWCSRTFANGSNCRSHKRRMH 143
++P TCP C N R H H
Sbjct: 22 EQPATCPICYAVIRQSRNLRRHLELRH 48
>d2j78a1 c.1.8.4 (A:3-445) Beta-glucosidase A {Thermotoga maritima
[TaxId: 2336]}
Length = 443
Score = 24.4 bits (52), Expect = 8.3
Identities = 12/75 (16%), Positives = 23/75 (30%)
Query: 38 VTAHTKAVHLGERPFVCHECGQSFASKGILQEHLTIHSDDAPWKCDICSKKSLKLSNVSC 97
+ AH +AV + + G F + A + L L+ +
Sbjct: 196 LRAHARAVKVFRETVKDGKIGIVFNNGYFEPASEKEEDIRAVRFMHQFNNYPLFLNPIYR 255
Query: 98 GWYPDESKDLKNHHN 112
G YP+ + +
Sbjct: 256 GDYPELVLEFAREYL 270
>d1pbga_ c.1.8.4 (A:) 6-phospho-beta-D-galactosidase, PGAL
{Lactococcus lactis [TaxId: 1358]}
Length = 468
Score = 24.4 bits (52), Expect = 8.7
Identities = 15/80 (18%), Positives = 24/80 (30%)
Query: 40 AHTKAVHLGERPFVCHECGQSFASKGILQEHLTIHSDDAPWKCDICSKKSLKLSNVSCGW 99
+H +AV L + E G A +D + + L G
Sbjct: 195 SHARAVKLYKDKGYKGEIGVVHALPTKYPYDPENPADVRAAELEDIIHNKFILDATYLGH 254
Query: 100 YPDESKDLKNHHNLHTGKRP 119
Y D++ + NH G
Sbjct: 255 YSDKTMEGVNHILAENGGEL 274
>d1qpga_ c.86.1.1 (A:) Phosphoglycerate kinase {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 415
Score = 24.3 bits (52), Expect = 8.8
Identities = 18/133 (13%), Positives = 32/133 (24%), Gaps = 11/133 (8%)
Query: 14 FRNASTLGKYSLALMVTRFSSRSAVTAHTKAVHLGERPFVCHECGQSFASKGILQEHLTI 73
R S++ + L F + KA+ RPF+ G A K L ++L
Sbjct: 167 HRAHSSMVGFDLPQRAAGFLLEKELKYFGKALENPTRPFLAILGGAKVADKIQLIDNLLD 226
Query: 74 HSDDAPWKCDICSKKSLKLSNVSCGWYPDESKDLKNHHNLHTGKRPYTCPWCSRTFANGS 133
K D ++ + + A G
Sbjct: 227 -------KVDSII----IGGGMAFTFKKVLENTEIGDSIFDKAGAEIVPKLMEKAKAKGV 275
Query: 134 NCRSHKRRMHPEE 146
+ +
Sbjct: 276 EVVLPVDFIIADA 288
>d1shyb2 g.16.2.1 (B:516-564) Hepatocyte growth factor receptor
{Human (Homo sapiens) [TaxId: 9606]}
Length = 49
Score = 22.5 bits (48), Expect = 9.8
Identities = 5/25 (20%), Positives = 6/25 (24%)
Query: 114 HTGKRPYTCPWCSRTFANGSNCRSH 138
+ C WC C S
Sbjct: 15 LSAPPFVQCGWCHDKCVRSEECLSG 39
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.321 0.133 0.432
Gapped
Lambda K H
0.267 0.0429 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 618,225
Number of extensions: 26052
Number of successful extensions: 227
Number of sequences better than 10.0: 1
Number of HSP's gapped: 213
Number of HSP's successfully gapped: 121
Length of query: 166
Length of database: 2,407,596
Length adjustment: 79
Effective length of query: 87
Effective length of database: 1,322,926
Effective search space: 115094562
Effective search space used: 115094562
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 49 (23.4 bits)