BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy16929
         (172 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1POC|A Chain A, Crystal Structure Of Bee-venom Phospholipase A2 In A
           Complex With A Transition-state Analogue
          Length = 134

 Score = 70.5 bits (171), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 38/132 (28%), Positives = 64/132 (48%), Gaps = 26/132 (19%)

Query: 57  FTGTKWCGTGDIARDISDTGIFHDIDSCCRDHDLCPENIVAKSTKYNLTNDANPLAIE-- 114
           + GT WCG G+ +   ++ G F   D+CCR HD+CP+ + A  +K+ LTN A+   +   
Sbjct: 3   YPGTLWCGHGNKSSGPNELGRFKHTDACCRTHDMCPDVMSAGESKHGLTNTASHTRLSCD 62

Query: 115 --------------------VGIAYFDILKPMCFRFDFPRIGCKKFFGDTE-QCAEFEMD 153
                               VG  YF+++   C++ + P  GC +    TE +C  + +D
Sbjct: 63  CDDKFYDCLKNSADTISSYFVGKMYFNLIDTKCYKLEHPVTGCGE---RTEGRCLHYTVD 119

Query: 154 LTKAKKWQWLGI 165
            +K K +QW  +
Sbjct: 120 KSKPKVYQWFDL 131


>pdb|2IXN|A Chain A, Crystal Structure Of The Pp2a Phosphatase Activator Ypa2
           Ptpa2
 pdb|2IXN|B Chain B, Crystal Structure Of The Pp2a Phosphatase Activator Ypa2
           Ptpa2
          Length = 310

 Score = 27.3 bits (59), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 26/122 (21%), Positives = 51/122 (41%), Gaps = 16/122 (13%)

Query: 21  EFQENVSQSFEKLYMKERVRLTTCSTKYVTVCSMFYFTGTKWCGTGDIARDISDTGIFHD 80
           +F + VS++  K+   E   LT    + +++     +    W     I     D G  H+
Sbjct: 87  DFYDEVSRNSRKILRSEFPSLTDEQLEQLSI-----YLDESWGNKRRI-----DYGSGHE 136

Query: 81  IDSCCRDHDLCPENIVAKSTKYNLTNDANPLAIEVGIAYFDILKPMCFRFDFPRIGCKKF 140
           ++  C  + L    I      +NL+ND+  L ++V I Y  I++ +  ++     G    
Sbjct: 137 LNFMCLLYGLYSYGI------FNLSNDSTNLVLKVFIEYLKIMRILETKYWLEPAGSHGV 190

Query: 141 FG 142
           +G
Sbjct: 191 WG 192


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.324    0.136    0.434 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,159,302
Number of Sequences: 62578
Number of extensions: 205462
Number of successful extensions: 591
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 588
Number of HSP's gapped (non-prelim): 15
length of query: 172
length of database: 14,973,337
effective HSP length: 92
effective length of query: 80
effective length of database: 9,216,161
effective search space: 737292880
effective search space used: 737292880
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 48 (23.1 bits)