Query psy16929
Match_columns 172
No_of_seqs 123 out of 203
Neff 4.3
Searched_HMMs 46136
Date Fri Aug 16 17:17:35 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16929.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/16929hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF05826 Phospholip_A2_2: Phos 100.0 9.3E-38 2E-42 234.5 2.1 78 56-133 1-99 (99)
2 cd04704 PLA2_bee_venom_like PL 100.0 6.5E-37 1.4E-41 229.6 4.8 76 55-130 1-97 (97)
3 cd04705 PLA2_group_III_like PL 99.6 1.2E-16 2.5E-21 121.2 1.3 59 71-129 24-100 (100)
4 cd00618 PLA2_like PLA2_like: P 99.1 1.9E-11 4.2E-16 87.0 2.7 46 57-104 1-46 (83)
5 smart00085 PA2c Phospholipase 98.9 1.4E-10 3E-15 89.5 -0.4 76 51-131 14-102 (117)
6 cd04706 PLA2_plant PLA2_plant: 97.6 4.9E-05 1.1E-09 59.5 2.5 38 56-95 21-58 (117)
7 cd04707 otoconin_90 otoconin_9 96.1 0.0017 3.7E-08 50.6 0.4 31 60-96 21-51 (117)
8 cd00125 PLA2c PLA2c: Phospholi 96.0 0.0019 4.1E-08 50.1 0.0 31 61-97 25-55 (115)
9 PF08398 Parvo_coat_N: Parvovi 95.7 0.0022 4.8E-08 45.6 -0.5 43 57-102 1-44 (64)
10 KOG4087|consensus 93.6 0.022 4.8E-07 46.1 0.3 30 61-96 46-75 (144)
11 PF00068 Phospholip_A2_1: Phos 89.7 0.047 1E-06 41.9 -1.8 31 61-97 26-56 (116)
12 PF08036 Antimicrobial_6: Diap 44.9 6.1 0.00013 25.6 -0.3 12 79-90 15-26 (39)
13 KOG3784|consensus 22.7 23 0.00049 33.3 -0.6 42 118-168 302-343 (407)
No 1
>PF05826 Phospholip_A2_2: Phospholipase A2; InterPro: IPR001211 Phospholipase A2 (3.1.1.4 from EC) (PLA2) is a small lipolytic enzyme that releases fatty acids from the second carbon group of glycerol. It is involved in a number of physiologically important cellular processes, such as the liberation of arachidonic acid from membrane phospholipids []. It plays a pivotal role in the biosynthesis of prostaglandin and other mediators of inflammation. PLA2 has four to seven disulphide bonds and binds a calcium ion that is essential for activity. Within the active enzyme, the alpha amino group is involved in a conserved hydrogen-bonding network linking the N-terminal region to the active site. The side chains of two conserved residues, His and Asp, participate in the catalytic network. Many PLA2's are widely distributed in snakes, lizards, bees and mammals. In mammals there are at least four forms: pancreatic, membrane-associated as well as two less well characterised forms. The venom of most snakes contains multiple forms of PLA2. Some of them are presynaptic neurotoxins which inhibit neuromuscular transmission by blocking acetylcholine release from the nerve termini. Some of the proteins in this family are allergens. Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Api m 1.; GO: 0004623 phospholipase A2 activity, 0005509 calcium ion binding, 0016042 lipid catabolic process; PDB: 1POC_A.
Probab=100.00 E-value=9.3e-38 Score=234.51 Aligned_cols=78 Identities=49% Similarity=1.070 Sum_probs=59.8
Q ss_pred eecCccccCCCCCCCCCCCCCCCCccccccccccCCccccccCCccCCccCCCh---------------------HHHHH
Q psy16929 56 YFTGTKWCGTGDIARDISDTGIFHDIDSCCRDHDLCPENIVAKSTKYNLTNDAN---------------------PLAIE 114 (172)
Q Consensus 56 i~PGTkWCG~Gn~A~~y~dLG~~~~tD~CCR~HD~Cp~~I~~~~tkyGl~N~~~---------------------~~S~~ 114 (172)
|+|||||||+||+|.+|+|||.+.+||+|||+||+||++|+++++||||+|.++ .+|+.
T Consensus 1 i~pGT~WCG~gn~a~~~~dlG~~~~tD~CCR~HD~C~~~I~~~~~k~gl~N~~~~T~~hC~Cd~~f~~CL~~~~~~~a~~ 80 (99)
T PF05826_consen 1 IYPGTKWCGPGNIAKNYSDLGEFKETDRCCREHDHCPDKIPPGETKYGLHNPRPFTISHCDCDSRFYQCLKNVNTSTANE 80 (99)
T ss_dssp B-TT-SSSBSS---SSTT---SSHHHHHHHHHHHT-SSEE-TT-EETTEE--SSS-EEBHHHHHHHHHHHHTS-HHHHHH
T ss_pred CCCCCcccCCCCCccCcccccccHHHHHHHHhhccCCCccCCCccccccccCCcCceeecCcccHHHHHHHHcCCchHHH
Confidence 799999999999999999999999999999999999999999999999999999 78999
Q ss_pred HHhHhhcccCCceeeecCC
Q psy16929 115 VGIAYFDILKPMCFRFDFP 133 (172)
Q Consensus 115 VG~~YFnvl~~~CF~~~~p 133 (172)
||.+||||++++||++++|
T Consensus 81 Vg~~yF~v~~~~Cf~~~~p 99 (99)
T PF05826_consen 81 VGNIYFNVLQPPCFELEYP 99 (99)
T ss_dssp HHHHHHHTS---EEEEES-
T ss_pred HHHHHHhccCCCeeCccCC
Confidence 9999999999999999987
No 2
>cd04704 PLA2_bee_venom_like PLA2_bee_venom_like: A sub-family of Phospholipase A2, similar to bee venom PLA2. PLA2 is a super-family of secretory and cytosolic enzymes; the latter are either Ca dependent or Ca independent. Enzymatically active PLA2 cleaves the sn-2 position of the glycerol backbone of phospholipids; secreted PLA2s have also been found to specifically bind to a variety of soluble and membrane proteins in mammals, including receptors. As a toxin, PLA2 is a potent presynaptic neurotoxin which blocks nerve terminals by binding to the nerve membrane and hydrolyzing stable membrane lipids. The products of the hydrolysis cannot form bilayers leading to a change in membrane conformation and ultimately to a block in the release of neurotransmitters. PLA2 may form dimers or oligomers. Bee venom PLA2 has fewer conserved disulfide bridges than most canonical PLA2s.
Probab=100.00 E-value=6.5e-37 Score=229.63 Aligned_cols=76 Identities=47% Similarity=0.968 Sum_probs=73.9
Q ss_pred eeecCccccCCCCCCCCCCCCCCCCccccccccccCCccccccCCccCCccCCCh---------------------HHHH
Q psy16929 55 FYFTGTKWCGTGDIARDISDTGIFHDIDSCCRDHDLCPENIVAKSTKYNLTNDAN---------------------PLAI 113 (172)
Q Consensus 55 ~i~PGTkWCG~Gn~A~~y~dLG~~~~tD~CCR~HD~Cp~~I~~~~tkyGl~N~~~---------------------~~S~ 113 (172)
+|+|||||||+||+|.+|+|||.+.+||+|||+||+||++|.+++++|||+|.++ .+|+
T Consensus 1 ~~~pGTkWCG~Gn~a~~~~dlG~~~~tD~CCr~HD~C~~~i~~~~~kyg~~N~~~~t~~~C~CD~~f~~CL~~~~~~~s~ 80 (97)
T cd04704 1 FIVPGTKWCGPGNIATNYSDLGAFRETDKCCREHDHCPDIISAGEYKYGLTNTRLFTRSHCDCDNRFRQCLKNVNDSTSN 80 (97)
T ss_pred CccCCCeecCCCCCCCCcccccCccccchHHHccccCcCcccccccccCccCCCccccccCcHHHHHHHHHHHcCCHHHH
Confidence 5899999999999999999999999999999999999999999999999999999 8899
Q ss_pred HHHhHhhcccCCceeee
Q psy16929 114 EVGIAYFDILKPMCFRF 130 (172)
Q Consensus 114 ~VG~~YFnvl~~~CF~~ 130 (172)
+||++||||++++||++
T Consensus 81 ~vG~~yFnv~~~~Cf~~ 97 (97)
T cd04704 81 QVGKIYFNVLQVPCFEL 97 (97)
T ss_pred HHHHHhhcccCCCccCC
Confidence 99999999999999975
No 3
>cd04705 PLA2_group_III_like PLA2_group_III_like: A sub-family of Phospholipase A2, similar to human group III PLA2. PLA2 is a super-family of secretory and cytosolic enzymes; the latter are either Ca dependent or Ca independent. Enzymatically active PLA2 cleaves the sn-2 position of the glycerol backbone of phospholipids; secreted PLA2s have also been found to specifically bind to a variety of soluble and membrane proteins in mammals, including receptors. As a toxin, PLA2 is a potent presynaptic neurotoxin which blocks nerve terminals by binding to the nerve membrane and hydrolyzing stable membrane lipids. The products of the hydrolysis cannot form bilayers leading to a change in membrane conformation and ultimately to a block in the release of neurotransmitters. PLA2 may form dimers or oligomers.
Probab=99.61 E-value=1.2e-16 Score=121.23 Aligned_cols=59 Identities=25% Similarity=0.479 Sum_probs=49.5
Q ss_pred CCCCCCCCCccccccccccCCccccccCCccCCccCCCh------------------HHHHHHHhHhhcccCCceee
Q psy16929 71 DISDTGIFHDIDSCCRDHDLCPENIVAKSTKYNLTNDAN------------------PLAIEVGIAYFDILKPMCFR 129 (172)
Q Consensus 71 ~y~dLG~~~~tD~CCR~HD~Cp~~I~~~~tkyGl~N~~~------------------~~S~~VG~~YFnvl~~~CF~ 129 (172)
...+||.+.+||+|||+||+||+.|.+++++|||+|.++ .-+-+||.++|+++++.||.
T Consensus 24 ~~~~lG~~~~~DrCCR~HD~Cp~~I~~~~~k~gl~N~~~~tisHCdCD~rf~~CL~~~n~~~~~~~~s~~lG~~~Fn 100 (100)
T cd04705 24 PFLSEGEFKEPDRCCWKHKQCPGHIIPPFSSDGHHNFHLHSVSHCDCDSRLKDCLRLSSSSRVGPTCSHLLGTTCFN 100 (100)
T ss_pred cccccccccchhhhhhhhhcCccccCCcccccceecCCCcccccccHHHHHHHHHHHcCCccccccHHHHhcccccC
Confidence 347899999999999999999999999999999999999 11112677888888888774
No 4
>cd00618 PLA2_like PLA2_like: Phospholipase A2, a super-family of secretory and cytosolic enzymes; the latter are either Ca dependent or Ca independent. PLA2 cleaves the sn-2 position of the glycerol backbone of phospholipids (PC or phosphatidylethanolamine), usually in a metal-dependent reaction, to generate lysophospholipid (LysoPL) and a free fatty acid (FA). The resulting products are either dietary or used in synthetic pathways for leukotrienes and prostaglandins. Often, arachidonic acid is released as a free fatty acid and acts as second messenger in signaling networks. Secreted PLA2s have also been found to specifically bind to a variety of soluble and membrane proteins in mammals, including receptors. As a toxin, PLA2 is a potent presynaptic neurotoxin which blocks nerve terminals by binding to the nerve membrane and hydrolyzing stable membrane lipids. The products of the hydrolysis (LysoPL and FA) cannot form bilayers leading to a change in membrane conformation and ultimately
Probab=99.15 E-value=1.9e-11 Score=87.00 Aligned_cols=46 Identities=26% Similarity=0.495 Sum_probs=41.7
Q ss_pred ecCccccCCCCCCCCCCCCCCCCccccccccccCCccccccCCccCCc
Q psy16929 57 FTGTKWCGTGDIARDISDTGIFHDIDSCCRDHDLCPENIVAKSTKYNL 104 (172)
Q Consensus 57 ~PGTkWCG~Gn~A~~y~dLG~~~~tD~CCR~HD~Cp~~I~~~~tkyGl 104 (172)
.|+++|||.|+.|.++..++ .+||+|||.||+|++.|...+.+++.
T Consensus 1 ~~ygc~CG~g~~~~~~g~p~--D~~D~CC~~HD~Cy~~~~~~~~~~~~ 46 (83)
T cd00618 1 LPYGCYCGPGGSACPSGQPV--DETDRCCRKHDCCYDQISDGGCCDGC 46 (83)
T ss_pred CCcCcccCCCCcCCCCCCCC--CcchhhhhhCccHhhhhhccCCCCCc
Confidence 37899999999999888887 69999999999999999999888873
No 5
>smart00085 PA2c Phospholipase A2.
Probab=98.93 E-value=1.4e-10 Score=89.45 Aligned_cols=76 Identities=20% Similarity=0.180 Sum_probs=57.9
Q ss_pred eccceeecCccccCCCCCCCCCCCCCCCCccccccccccCCccccccCCccCCccCCCh-------------HHHHHHHh
Q psy16929 51 VCSMFYFTGTKWCGTGDIARDISDTGIFHDIDSCCRDHDLCPENIVAKSTKYNLTNDAN-------------PLAIEVGI 117 (172)
Q Consensus 51 ~~~~~i~PGTkWCG~Gn~A~~y~dLG~~~~tD~CCR~HD~Cp~~I~~~~tkyGl~N~~~-------------~~S~~VG~ 117 (172)
..+.++.++|+||+-|+.+.... ..+||+||++||+|.+.|++ +.-+..++.+- ..+..++.
T Consensus 14 ~~~~~~~y~~YGCyCG~gg~G~p----vD~~D~CC~~HD~Cy~~~~~-~~C~~~~~~y~~~c~~~~~~C~~~~~~C~~~~ 88 (117)
T smart00085 14 GKRAWLSYGDYGCYCGWGGSGTP----VDATDRCCFVHDCCYGKAEK-EGCNPKTTTYSYSCDNGFITCGGKNTACLVFV 88 (117)
T ss_pred CCCcccchhccCcccCCCCCCCc----cccccchhhhcCchhhhccc-CCCcccccceEEEEECCcceECcCCCccceee
Confidence 34668999999999998876543 46899999999999999987 44333333222 34678889
Q ss_pred HhhcccCCceeeec
Q psy16929 118 AYFDILKPMCFRFD 131 (172)
Q Consensus 118 ~YFnvl~~~CF~~~ 131 (172)
.+||.....||+..
T Consensus 89 C~CD~~aa~Cf~~~ 102 (117)
T smart00085 89 CECDRAAAICFAKN 102 (117)
T ss_pred cccCHHHHHHhhhC
Confidence 99999999999864
No 6
>cd04706 PLA2_plant PLA2_plant: Plant-specific sub-family of Phospholipase A2, a super-family of secretory and cytosolic enzymes; the latter are either Ca dependent or Ca independent. Enzymatically active PLA2 cleaves the sn-2 position of the glycerol backbone of phospholipids; secreted PLA2s have also been found to specifically bind to a variety of soluble and membrane proteins in mammals, including receptors. As a toxin, PLA2 is a potent presynaptic neurotoxin which blocks nerve terminals by binding to the nerve membrane and hydrolyzing stable membrane lipids. The products of the hydrolysis cannot form bilayers leading to a change in membrane conformation and ultimately to a block in the release of neurotransmitters. PLA2 may form dimers or oligomers. This sub-family does not appear to have a conserved active site and metal-binding loop.
Probab=97.55 E-value=4.9e-05 Score=59.47 Aligned_cols=38 Identities=29% Similarity=0.667 Sum_probs=28.8
Q ss_pred eecCccccCCCCCCCCCCCCCCCCccccccccccCCcccc
Q psy16929 56 YFTGTKWCGTGDIARDISDTGIFHDIDSCCRDHDLCPENI 95 (172)
Q Consensus 56 i~PGTkWCG~Gn~A~~y~dLG~~~~tD~CCR~HD~Cp~~I 95 (172)
..--.+|||+|+.+.. ++..-..+|+||+.||+|-+..
T Consensus 21 y~~YG~yCG~g~~g~~--~~~P~D~lD~CC~~HD~Cy~~~ 58 (117)
T cd04706 21 FLRYGKYCGPGYSGCP--GERPCDDLDACCMTHDACVQAK 58 (117)
T ss_pred ccccCcccCCCCCCCC--CCCCcchhhHHHHhCcCcccCC
Confidence 3347899999987632 3334568999999999999854
No 7
>cd04707 otoconin_90 otoconin_90: Phospholipase A2-like domains present in otoconin-90 and otoconin-95, mammal proteins that are principal matrix proteins of calcitic otoconia. Interactions involving otoconin-90 may trigger or constitute key events in otoconia formation. The PLA2-like domains in otoconins may have lost their metal-binding sites.
Probab=96.12 E-value=0.0017 Score=50.63 Aligned_cols=31 Identities=26% Similarity=0.673 Sum_probs=23.9
Q ss_pred ccccCCCCCCCCCCCCCCCCccccccccccCCccccc
Q psy16929 60 TKWCGTGDIARDISDTGIFHDIDSCCRDHDLCPENIV 96 (172)
Q Consensus 60 TkWCG~Gn~A~~y~dLG~~~~tD~CCR~HD~Cp~~I~ 96 (172)
--|||.|.....- -++|+||..||.|-+.+.
T Consensus 21 GCyCG~GG~G~Pv------D~~DrCC~~HD~CY~~~~ 51 (117)
T cd04707 21 GCYCGQEGEGLPV------DELDRCCFQHRCCLEQAS 51 (117)
T ss_pred CCcccCCCCCCCc------ccchhHHHHhHHHHhhhh
Confidence 3589999864433 269999999999998554
No 8
>cd00125 PLA2c PLA2c: Phospholipase A2, a family of secretory and cytosolic enzymes; the latter are either Ca dependent or Ca independent. PLA2 cleaves the sn-2 position of the glycerol backbone of phospholipids (PC or phosphatidylethanolamine), usually in a metal-dependent reaction, to generate lysophospholipid (LysoPL) and a free fatty acid (FA). The resulting products are either dietary or used in synthetic pathways for leukotrienes and prostaglandins. Often, arachidonic acid is released as a free fatty acid and acts as second messenger in signaling networks. Secreted PLA2s have also been found to specifically bind to a variety of soluble and membrane proteins in mammals, including receptors. As a toxin, PLA2 is a potent presynaptic neurotoxin which blocks nerve terminals by binding to the nerve membrane and hydrolyzing stable membrane lipids. The products of the hydrolysis (LysoPL and FA) cannot form bilayers leading to a change in membrane conformation and ultimately to a block in
Probab=95.97 E-value=0.0019 Score=50.08 Aligned_cols=31 Identities=32% Similarity=0.793 Sum_probs=24.2
Q ss_pred cccCCCCCCCCCCCCCCCCccccccccccCCcccccc
Q psy16929 61 KWCGTGDIARDISDTGIFHDIDSCCRDHDLCPENIVA 97 (172)
Q Consensus 61 kWCG~Gn~A~~y~dLG~~~~tD~CCR~HD~Cp~~I~~ 97 (172)
-|||.|....+- -.+|+||+.||.|-..+..
T Consensus 25 CyCG~GG~G~Pv------D~~DrCC~~HD~CY~~~~~ 55 (115)
T cd00125 25 CYCGLGGSGTPV------DDTDRCCQVHDCCYDRAEK 55 (115)
T ss_pred CccCCCCCCCCc------ccHHHHHHHHHhHHhcccc
Confidence 589998865433 2589999999999987754
No 9
>PF08398 Parvo_coat_N: Parvovirus coat protein VP1; InterPro: IPR013607 Parvoviruses are some of the smallest viruses containing linear, non-segmented single-stranded DNA genomes, with an average genome size of 5000 nucleotides. Parvoviruses have been described that infect a wide range of invertebrates and vertebrates and are well known for causing enteric disease in mammals. Genomes contains two large ORFs: NS1 and VP1; other ORFs are found in some sub-types and different gene products can arise from splice variants and the use of different start codons []. This is the N-terminal region of the Parvovirus VP1 coat protein []; its function is not known. ; GO: 0005198 structural molecule activity, 0019028 viral capsid
Probab=95.71 E-value=0.0022 Score=45.59 Aligned_cols=43 Identities=21% Similarity=0.400 Sum_probs=32.2
Q ss_pred ecCccccCCCCCCCCCCCCCCCCccccccccccCCcc-ccccCCccC
Q psy16929 57 FTGTKWCGTGDIARDISDTGIFHDIDSCCRDHDLCPE-NIVAKSTKY 102 (172)
Q Consensus 57 ~PGTkWCG~Gn~A~~y~dLG~~~~tD~CCR~HD~Cp~-~I~~~~tky 102 (172)
+||++++||||.-.+-.. -..+|..||+||.+-+ .|..+..-|
T Consensus 1 lPg~~YlGPgn~l~~g~P---v~~~D~aA~~HD~aY~~~lk~G~NPY 44 (64)
T PF08398_consen 1 LPGYKYLGPGNPLDNGEP---VNPVDAAAREHDEAYDELLKHGDNPY 44 (64)
T ss_pred CCCCCccCCCCCcCCCCC---CCHHHHHHHHHHHHHHHHHHcCCCCc
Confidence 599999999998655443 3579999999998877 555554333
No 10
>KOG4087|consensus
Probab=93.59 E-value=0.022 Score=46.15 Aligned_cols=30 Identities=33% Similarity=0.806 Sum_probs=23.4
Q ss_pred cccCCCCCCCCCCCCCCCCccccccccccCCccccc
Q psy16929 61 KWCGTGDIARDISDTGIFHDIDSCCRDHDLCPENIV 96 (172)
Q Consensus 61 kWCG~Gn~A~~y~dLG~~~~tD~CCR~HD~Cp~~I~ 96 (172)
=|||-|-....-+ ++|+||..||.|-+-..
T Consensus 46 CyCGlGG~G~P~D------~iDwCC~~HDcCY~~le 75 (144)
T KOG4087|consen 46 CYCGLGGSGQPKD------AIDWCCHAHDCCYDRLE 75 (144)
T ss_pred ccccCCCCCCccc------hHHHHHhcccHHHHHHH
Confidence 5899888655432 59999999999988554
No 11
>PF00068 Phospholip_A2_1: Phospholipase A2; InterPro: IPR001211 Phospholipase A2 (3.1.1.4 from EC) (PLA2) is a small lipolytic enzyme that releases fatty acids from the second carbon group of glycerol. It is involved in a number of physiologically important cellular processes, such as the liberation of arachidonic acid from membrane phospholipids []. It plays a pivotal role in the biosynthesis of prostaglandin and other mediators of inflammation. PLA2 has four to seven disulphide bonds and binds a calcium ion that is essential for activity. Within the active enzyme, the alpha amino group is involved in a conserved hydrogen-bonding network linking the N-terminal region to the active site. The side chains of two conserved residues, His and Asp, participate in the catalytic network. Many PLA2's are widely distributed in snakes, lizards, bees and mammals. In mammals there are at least four forms: pancreatic, membrane-associated as well as two less well characterised forms. The venom of most snakes contains multiple forms of PLA2. Some of them are presynaptic neurotoxins which inhibit neuromuscular transmission by blocking acetylcholine release from the nerve termini. Some of the proteins in this family are allergens. Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Api m 1.; GO: 0004623 phospholipase A2 activity, 0005509 calcium ion binding, 0016042 lipid catabolic process; PDB: 1OQS_F 1S6B_B 1XXW_B 1MH2_B 2RD4_B 1OZ6_A 2OSN_A 2PH4_B 1FDK_A 2BP2_A ....
Probab=89.69 E-value=0.047 Score=41.86 Aligned_cols=31 Identities=35% Similarity=0.832 Sum_probs=21.9
Q ss_pred cccCCCCCCCCCCCCCCCCccccccccccCCcccccc
Q psy16929 61 KWCGTGDIARDISDTGIFHDIDSCCRDHDLCPENIVA 97 (172)
Q Consensus 61 kWCG~Gn~A~~y~dLG~~~~tD~CCR~HD~Cp~~I~~ 97 (172)
-|||.|....+ --++|+||+.|+.|-.-+..
T Consensus 26 CyCg~~g~G~P------vD~iD~~C~~h~~Cy~~~~~ 56 (116)
T PF00068_consen 26 CYCGFGGKGQP------VDEIDRCCRKHDQCYKCAKE 56 (116)
T ss_dssp TTBSSSSSSS-------SSHHHHHHHHHHHHHHHHTT
T ss_pred ccCCCCCCCCC------cccccchhHHhHHHHHHHhc
Confidence 38988764332 23689999999999875544
No 12
>PF08036 Antimicrobial_6: Diapausin family of antimicrobial peptide; InterPro: IPR012525 This family consists of diapausin-related antimicrobial peptides. Diapause during periods of environmental adversity is an essential part of the life cycle of many organisms with the molecular basis being different among animals. Diapause-specific peptides provide anti-fungal activity and act as N-type voltage-gated calcium channel blocker [].; GO: 0050832 defense response to fungus, 0005576 extracellular region; PDB: 2E2F_A.
Probab=44.85 E-value=6.1 Score=25.64 Aligned_cols=12 Identities=42% Similarity=1.043 Sum_probs=9.8
Q ss_pred CccccccccccC
Q psy16929 79 HDIDSCCRDHDL 90 (172)
Q Consensus 79 ~~tD~CCR~HD~ 90 (172)
.+-|.|||+|-+
T Consensus 15 ~Er~eCCrAhG~ 26 (39)
T PF08036_consen 15 PERDECCRAHGY 26 (39)
T ss_dssp TTTHHHHHHTT-
T ss_pred hhHHHHHHHcCc
Confidence 578999999986
No 13
>KOG3784|consensus
Probab=22.73 E-value=23 Score=33.29 Aligned_cols=42 Identities=26% Similarity=0.372 Sum_probs=32.7
Q ss_pred HhhcccCCceeeecCCccccceeccccccccccccCcCcccceeeeccCCC
Q psy16929 118 AYFDILKPMCFRFDFPRIGCKKFFGDTEQCAEFEMDLTKAKKWQWLGIALP 168 (172)
Q Consensus 118 ~YFnvl~~~CF~~~~p~~~C~~~~~~~~~C~eY~~d~s~~k~wQ~fd~~~~ 168 (172)
+=|.+-.++|++....- ...|-||..+..+.|+|||+.+-+|
T Consensus 302 i~F~~trmr~Wrvte~~---------la~~FEy~~~~~~d~k~rWv~I~T~ 343 (407)
T KOG3784|consen 302 IAFRWTRMRCWRVTEEG---------LAFSFEYLRDEVKDKKLRWVTIFTP 343 (407)
T ss_pred eEEEeeeeEeeeccHHH---------HHHHHHHHHhhccccceeEEEEcCc
Confidence 34677788888875221 2469999999999999999998877
Done!