RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy16929
         (172 letters)



>1poc_A Phospholipase A2; hydrolase; HET: GEL; 2.00A {Apis mellifera} SCOP:
           a.133.1.1
          Length = 134

 Score =  102 bits (255), Expect = 1e-28
 Identities = 36/126 (28%), Positives = 59/126 (46%), Gaps = 24/126 (19%)

Query: 59  GTKWCGTGDIARDISDTGIFHDIDSCCRDHDLCPENIVAKSTKYNLTNDA---------- 108
           GT WCG G+ +   ++ G F   D+CCR HD+CP+ + A  +K+ LTN A          
Sbjct: 5   GTLWCGHGNKSSGPNELGRFKHTDACCRTHDMCPDVMSAGESKHGLTNTASHTRLSCDCD 64

Query: 109 ------------NPLAIEVGIAYFDILKPMCFRFDFPRIGCKKFFGDTEQCAEFEMDLTK 156
                          +  VG  YF+++   C++ + P  GC +      +C  + +D +K
Sbjct: 65  DKFYDCLKNSADTISSYFVGKMYFNLIDTKCYKLEHPVTGCGER--TEGRCLHYTVDKSK 122

Query: 157 AKKWQW 162
            K +QW
Sbjct: 123 PKVYQW 128


>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
           programmed cell death; HET: DTP; 6.90A {Drosophila
           melanogaster} PDB: 3iz8_A*
          Length = 1221

 Score = 44.8 bits (105), Expect = 5e-06
 Identities = 26/171 (15%), Positives = 46/171 (26%), Gaps = 47/171 (27%)

Query: 8   STRMRMSMYVNSDEFQENVSQSFEKLYM---KERVRLTTC-----STKYVTVCSMFYFTG 59
              M   MY+   +   N +Q F K  +   +  ++L          K V +  +    G
Sbjct: 104 QPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVL---G 160

Query: 60  T-KWCGTGDIARDIS-----DTGIF-HDIDSCCRDHD-------LCPENIVAKSTKYNLT 105
           + K     D+          D  IF  ++ +C            L    I    T  +  
Sbjct: 161 SGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLL-YQIDPNWTSRSDH 219

Query: 106 NDANPLAIEVGIAYF-----------------DILKPMCFR-FDFPRIGCK 138
           +    L I    A                   ++     +  F+     CK
Sbjct: 220 SSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNL---SCK 267



 Score = 29.8 bits (66), Expect = 0.57
 Identities = 11/85 (12%), Positives = 25/85 (29%), Gaps = 31/85 (36%)

Query: 18  NSDEFQENVSQSFEKLY-----MKERVRLTTCSTKYVTVCSMFYFTGTKWCGTGDIARDI 72
           + +         F  ++     +++++R                   T W  +G I   +
Sbjct: 486 HPERMTL-----FRMVFLDFRFLEQKIRHD----------------STAWNASGSILNTL 524

Query: 73  SDTGIFHD-IDSCCRDHDLCPENIV 96
                +   I     D+D   E +V
Sbjct: 525 QQLKFYKPYI----CDNDPKYERLV 545



 Score = 28.3 bits (62), Expect = 1.7
 Identities = 18/166 (10%), Positives = 45/166 (27%), Gaps = 58/166 (34%)

Query: 13  MSMYVNSDEFQENVSQSFEKLYMKERVRLTTCSTKYVTVCSMFYFTGTKWCGTGDIARDI 72
              + +  +   N+      +  +  +R    S  Y                   +  ++
Sbjct: 210 DPNWTSRSDHSSNIKLRIHSI--QAELRRLLKSKPYENCL--------------LVLLNV 253

Query: 73  SDTGIFHDIDSCC------RDHDLCPENIVAKSTKY--------NLTNDA---------- 108
            +   ++  +  C      R   +  + + A +T +         LT D           
Sbjct: 254 QNAKAWNAFNLSCKILLTTRFKQVT-DFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLD 312

Query: 109 -------------NPLAIEVGIAYFDILKPMCFRFD-FPRIGCKKF 140
                        NP  + + IA  + ++     +D +  + C K 
Sbjct: 313 CRPQDLPREVLTTNPRRLSI-IA--ESIRDGLATWDNWKHVNCDKL 355


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
            acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
            synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 43.9 bits (103), Expect = 9e-06
 Identities = 29/132 (21%), Positives = 48/132 (36%), Gaps = 32/132 (24%)

Query: 11   MRMSMYVNSDEFQENVSQSFEK--LYMKER-----VRLTTCSTKYVTVCSMFYFTGTKWC 63
            M M +Y  S   Q+ V   + +   + K+      + +   +   +T+    +F G K  
Sbjct: 1631 MGMDLYKTSKAAQD-V---WNRADNHFKDTYGFSILDIVINNPVNLTI----HFGGEK-- 1680

Query: 64   GTGDIARDISDTGIFHDI-DSCCRDHDLCPENIVAKSTKY---------NLTNDANPLAI 113
              G   R+     IF  I D   +   +  E I   ST Y         + T    P A+
Sbjct: 1681 --GKRIRENYSAMIFETIVDGKLKTEKIFKE-INEHSTSYTFRSEKGLLSATQFTQP-AL 1736

Query: 114  -EVGIAYFDILK 124
              +  A F+ LK
Sbjct: 1737 TLMEKAAFEDLK 1748


>2wg7_A PLA2, putative phospholipase A2; hydrolase, secretory PLA2; 2.00A
          {Oryza sativa} PDB: 2wg9_A* 2wg8_B 2wg8_A
          Length = 130

 Score = 27.5 bits (60), Expect = 1.5
 Identities = 12/49 (24%), Positives = 21/49 (42%), Gaps = 4/49 (8%)

Query: 43 TCSTKYVTVCSMFYFTGTKWCGTGDIARDISDTGIFHDIDSCCRDHDLC 91
          TC +++ T+  +  +   K+CG                +D+CC  HD C
Sbjct: 22 TCESQFCTIAPLLRYG--KYCGILYSGCP--GERPCDALDACCMVHDHC 66


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.324    0.136    0.434 

Gapped
Lambda     K      H
   0.267   0.0584    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,656,766
Number of extensions: 144952
Number of successful extensions: 360
Number of sequences better than 10.0: 1
Number of HSP's gapped: 358
Number of HSP's successfully gapped: 30
Length of query: 172
Length of database: 6,701,793
Length adjustment: 87
Effective length of query: 85
Effective length of database: 4,272,666
Effective search space: 363176610
Effective search space used: 363176610
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 54 (24.9 bits)