RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy16934
(96 letters)
>1poc_A Phospholipase A2; hydrolase; HET: GEL; 2.00A {Apis mellifera}
SCOP: a.133.1.1
Length = 134
Score = 76.2 bits (187), Expect = 1e-19
Identities = 23/53 (43%), Positives = 33/53 (62%)
Query: 22 TKWCGTGDIARDISDTGIFHDIDSCCRDHDLCPENIVAKSTKYNLTNDGSFTR 74
T WCG G+ + ++ G F D+CCR HD+CP+ + A +K+ LTN S TR
Sbjct: 6 TLWCGHGNKSSGPNELGRFKHTDACCRTHDMCPDVMSAGESKHGLTNTASHTR 58
>2y8l_A 5'-AMP-activated protein kinase catalytic subunit; transferase,
nucleotide-binding, serine/threonine-protein KI; HET:
ADP AMP; 2.50A {Rattus norvegicus} PDB: 2y8q_A* 2ya3_A*
Length = 173
Score = 41.4 bits (96), Expect = 5e-06
Identities = 18/46 (39%), Positives = 23/46 (50%)
Query: 1 MSLQLYQVGYKNYLLDFKSIRTKWCGTGDIARDISDTGIFHDIDSC 46
MSLQLYQV + YLLDF+SI + +G + SC
Sbjct: 70 MSLQLYQVDSRTYLLDFRSIDDEITEAKSGTATPQRSGSISNYRSC 115
>2v8q_A 5'-AMP-activated protein kinase catalytic subunit; phosphorylation,
nucleotide-binding, serine/threonine-protei kinase,
magnesium, CBS domain; HET: AMP; 2.10A {Rattus
norvegicus} SCOP: d.129.6.2 PDB: 2v92_A* 2v9j_A* 2y94_C*
Length = 157
Score = 41.4 bits (96), Expect = 6e-06
Identities = 18/46 (39%), Positives = 23/46 (50%)
Query: 1 MSLQLYQVGYKNYLLDFKSIRTKWCGTGDIARDISDTGIFHDIDSC 46
MSLQLYQV + YLLDF+SI + +G + SC
Sbjct: 56 MSLQLYQVDSRTYLLDFRSIDDEITEAKSGTATPQRSGSISNYRSC 101
>2qrd_A SNF1-like protein kinase SSP2; AMPK, ADP, ATP-binding, kinase,
nucleotide-binding, serine/T protein kinase,
transferase, CBS domain; HET: ADP ATP; 2.41A
{Schizosaccharomyces pombe} SCOP: d.129.6.2 PDB:
2ooy_A* 2qr1_A* 2qrc_A* 2oox_A* 2qre_A*
Length = 137
Score = 40.1 bits (93), Expect = 1e-05
Identities = 9/20 (45%), Positives = 13/20 (65%)
Query: 1 MSLQLYQVGYKNYLLDFKSI 20
+ LQLY+V ++LD KS
Sbjct: 78 IELQLYEVMPGCFMLDVKSN 97
>3t4n_A Carbon catabolite-derepressing protein kinase; CBS domain,
nucleotide binding, cytosol, protein binding; HET: ADP;
2.30A {Saccharomyces cerevisiae} PDB: 3tdh_A* 3te5_A*
2qlv_A
Length = 179
Score = 38.2 bits (88), Expect = 9e-05
Identities = 10/23 (43%), Positives = 15/23 (65%)
Query: 1 MSLQLYQVGYKNYLLDFKSIRTK 23
M +QL+Q+ NYL+DFK +
Sbjct: 114 MVIQLFQIETNNYLVDFKFDGWE 136
>4eai_A 5'-AMP-activated protein kinase catalytic subunit linker,
5'-AMP-activated protein...; AMPK, transferase; HET:
AMP; 2.29A {Rattus norvegicus} PDB: 4eaj_A* 4eak_A*
4eal_A*
Length = 106
Score = 36.8 bits (85), Expect = 2e-04
Identities = 17/29 (58%), Positives = 19/29 (65%)
Query: 1 MSLQLYQVGYKNYLLDFKSIRTKWCGTGD 29
MSLQLYQV + YLLDF+SI G G
Sbjct: 59 MSLQLYQVDSRTYLLDFRSIDDGGGGGGG 87
>2y94_A 5'-AMP-activated protein kinase catalytic subunit; transferase,
nucleotide-binding, staurosporine-binding,
serine/threonine-protein kinase; HET: TPO STU AMP; 3.24A
{Rattus norvegicus}
Length = 476
Score = 37.1 bits (86), Expect = 2e-04
Identities = 15/20 (75%), Positives = 17/20 (85%)
Query: 1 MSLQLYQVGYKNYLLDFKSI 20
MSLQLYQV + YLLDF+SI
Sbjct: 449 MSLQLYQVDSRTYLLDFRSI 468
>4eag_A EG:132E8.2 protein; AMPK, transferase; HET: ATP TAM; 2.70A
{Drosophila melanogaster}
Length = 130
Score = 33.5 bits (76), Expect = 0.003
Identities = 18/32 (56%), Positives = 20/32 (62%)
Query: 1 MSLQLYQVGYKNYLLDFKSIRTKWCGTGDIAR 32
MSLQLYQV K+YLLDFKS+ GD
Sbjct: 59 MSLQLYQVDAKSYLLDFKSLTNDEVEQGDDVI 90
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 29.1 bits (64), Expect = 0.23
Identities = 12/57 (21%), Positives = 21/57 (36%), Gaps = 12/57 (21%)
Query: 10 YKNYLLDFKSIRTK-------WCGTGDIARDISDTGIFHD-IDSCCRDHDLCPENIV 58
++ LDF+ + K W +G I + + I D+D E +V
Sbjct: 493 FRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYI----CDNDPKYERLV 545
Score = 27.9 bits (61), Expect = 0.60
Identities = 13/81 (16%), Positives = 32/81 (39%), Gaps = 6/81 (7%)
Query: 10 YKNYLLDFKSIRTKWCGTGDIARDISDTGIFHDIDSCCRDHDLCPENIVAKSTKYNLTND 69
+ ++ +DF++ ++ DI D + D C+D P++I++K ++
Sbjct: 2 HHHHHMDFETGEHQYQ-YKDILSVFEDA-FVDNFD--CKDVQDMPKSILSKEEIDHIIMS 57
Query: 70 GSFTRRLRKFYW--EKQGGEQ 88
+ +W + E
Sbjct: 58 KDAVSGTLRLFWTLLSKQEEM 78
Score = 24.4 bits (52), Expect = 8.1
Identities = 10/91 (10%), Positives = 25/91 (27%), Gaps = 26/91 (28%)
Query: 10 YKNYLLDFKSIRTKWCGTGDIARDISDTGIFHDIDSCCRDHDLCPENIVAKSTKYNLTND 69
Y+N LL + ++ + ++ + C+ I+ + +T+
Sbjct: 243 YENCLL--------------VLLNVQNAKAWNAFNLSCK--------ILLTTRFKQVTDF 280
Query: 70 GSFTRRLRKFYWEKQGG----EQLTLTSLAI 96
S E +L +
Sbjct: 281 LSAATTTHISLDHHSMTLTPDEVKSLLLKYL 311
>2nwi_A Hypothetical protein; structural genomics, unknown function,
PSI-2, protein structure initiative; 2.20A
{Archaeoglobus fulgidus} SCOP: d.190.1.3
Length = 172
Score = 27.2 bits (60), Expect = 0.70
Identities = 6/18 (33%), Positives = 9/18 (50%)
Query: 66 LTNDGSFTRRLRKFYWEK 83
+T DGS T + +K
Sbjct: 11 MTTDGSITAIIEAVTQKK 28
>2olw_A Ribosomal large subunit pseudouridine synthase E; bifurcated beta
sheet, isomerase; 1.60A {Escherichia coli}
Length = 217
Score = 26.8 bits (60), Expect = 0.88
Identities = 7/20 (35%), Positives = 9/20 (45%), Gaps = 2/20 (10%)
Query: 66 LTNDGSFTRRLR--KFYWEK 83
LTN+G+ RL K
Sbjct: 88 LTNNGALQARLTQPGKRTGK 107
>2oml_A Ribosomal large subunit pseudouridine synthase E; bifurcated beta
sheet, thrombin-cleaved, isomerase; 1.20A {Escherichia
coli}
Length = 189
Score = 26.7 bits (60), Expect = 0.93
Identities = 7/20 (35%), Positives = 9/20 (45%), Gaps = 2/20 (10%)
Query: 66 LTNDGSFTRRLR--KFYWEK 83
LTN+G+ RL K
Sbjct: 60 LTNNGALQARLTQPGKRTGK 79
>2wg7_A PLA2, putative phospholipase A2; hydrolase, secretory PLA2; 2.00A
{Oryza sativa} PDB: 2wg9_A* 2wg8_B 2wg8_A
Length = 130
Score = 25.6 bits (55), Expect = 2.0
Identities = 9/31 (29%), Positives = 12/31 (38%), Gaps = 2/31 (6%)
Query: 23 KWCGTGDIARDISDTGIFHDIDSCCRDHDLC 53
K+CG +D+CC HD C
Sbjct: 38 KYCGILYSGCP--GERPCDALDACCMVHDHC 66
>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics,
PSI-biology, protein structure in northeast structural
genomics; 2.20A {Methanosarcina mazei}
Length = 235
Score = 25.1 bits (55), Expect = 3.6
Identities = 5/14 (35%), Positives = 10/14 (71%)
Query: 25 CGTGDIARDISDTG 38
CG+G I+ +++ G
Sbjct: 39 CGSGKISLELASKG 52
>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin,
flavin, electron transfer, hydride transfer,
oxidoreductase; HET: FAD FMN NAP MDE; 2.20A
{Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1
Length = 671
Score = 25.0 bits (55), Expect = 5.1
Identities = 7/23 (30%), Positives = 9/23 (39%), Gaps = 1/23 (4%)
Query: 65 NLTNDGSFTRRLRKFYWEK-QGG 86
L RL FY E+ + G
Sbjct: 28 GLEEYPDGAERLAAFYAERARHG 50
>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein
structure initiative, NEW YORK SGX research center for
structural genomics; 1.70A {Bacillus thuringiensis}
Length = 242
Score = 24.1 bits (52), Expect = 9.6
Identities = 6/14 (42%), Positives = 7/14 (50%)
Query: 25 CGTGDIARDISDTG 38
CG G +S TG
Sbjct: 62 CGDGYGTYKLSRTG 75
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.138 0.438
Gapped
Lambda K H
0.267 0.0599 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,471,784
Number of extensions: 72977
Number of successful extensions: 175
Number of sequences better than 10.0: 1
Number of HSP's gapped: 175
Number of HSP's successfully gapped: 48
Length of query: 96
Length of database: 6,701,793
Length adjustment: 62
Effective length of query: 34
Effective length of database: 4,970,691
Effective search space: 169003494
Effective search space used: 169003494
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (23.7 bits)