BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy16938
(403 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2O6L|A Chain A, Crystal Structure Of The Udp-Glucuronic Acid Binding
Domain Of The Human Drug Metabolizing
Udp-Glucuronosyltransferase 2b7
pdb|2O6L|B Chain B, Crystal Structure Of The Udp-Glucuronic Acid Binding
Domain Of The Human Drug Metabolizing
Udp-Glucuronosyltransferase 2b7
Length = 170
Score = 93.2 bits (230), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 49/143 (34%), Positives = 72/143 (50%), Gaps = 5/143 (3%)
Query: 183 TKLSEETKLGFLEVFKQLKLPIFWKIDITNDPVLNAKTLPDNVFIQKWYPQTDILAHPNL 242
+ +EE Q+ + W+ D N P TL N + KW PQ D+L HP
Sbjct: 33 SNXTEERANVIASALAQIPQKVLWRFD-GNKP----DTLGLNTRLYKWIPQNDLLGHPKT 87
Query: 243 RLFITHGGISSLMEASSLGVPVLGVPFFGDQYRNMVLLRHRGYALIEPIQTLTKQSFLKN 302
R FITHGG + + EA G+P +G+P F DQ N+ + RG A+ T + L
Sbjct: 88 RAFITHGGANGIYEAIYHGIPXVGIPLFADQPDNIAHXKARGAAVRVDFNTXSSTDLLNA 147
Query: 303 AQTMLNDPSFKQNAKKWASIAND 325
+ ++NDPS+K+N K + I +D
Sbjct: 148 LKRVINDPSYKENVXKLSRIQHD 170
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 38/81 (46%), Gaps = 7/81 (8%)
Query: 1 MSFGSVVDPTKLSEETKLGFLEVFKQLKLPIFWKIDITNDPVLNAKTLPDNVFIQKWYPQ 60
S GS V + +EE Q+ + W+ D N P TL N + KW PQ
Sbjct: 26 FSLGSXV--SNXTEERANVIASALAQIPQKVLWRFD-GNKP----DTLGLNTRLYKWIPQ 78
Query: 61 TDILAHPNLRLFITHGGISSL 81
D+L HP R FITHGG + +
Sbjct: 79 NDLLGHPKTRAFITHGGANGI 99
>pdb|3HBF|A Chain A, Structure Of Ugt78g1 Complexed With Myricetin And Udp
pdb|3HBJ|A Chain A, Structure Of Ugt78g1 Complexed With Udp
Length = 454
Score = 54.7 bits (130), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 24/53 (45%), Positives = 35/53 (66%)
Query: 227 IQKWYPQTDILAHPNLRLFITHGGISSLMEASSLGVPVLGVPFFGDQYRNMVL 279
I W PQ +IL H ++ +F+TH G +S++E GVP++ PFFGDQ N +L
Sbjct: 331 IVAWAPQVEILKHSSVGVFLTHSGWNSVLECIVGGVPMISRPFFGDQGLNTIL 383
Score = 37.0 bits (84), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 41/90 (45%), Gaps = 16/90 (17%)
Query: 1 MSFGSVVDPTKLSEETKLGFLEVFKQLKLPIFWKIDITNDPVLNAKTLPDNVF------- 53
+SFGSVV P E T L E ++ P W DP + LP
Sbjct: 278 ISFGSVVTPPP-HELTALA--ESLEECGFPFIW--SFRGDP---KEKLPKGFLERTKTKG 329
Query: 54 -IQKWYPQTDILAHPNLRLFITHGGISSLM 82
I W PQ +IL H ++ +F+TH G +S++
Sbjct: 330 KIVAWAPQVEILKHSSVGVFLTHSGWNSVL 359
>pdb|2IYF|A Chain A, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
pdb|2IYF|B Chain B, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
Length = 430
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 46/98 (46%), Gaps = 2/98 (2%)
Query: 221 LPDNVFIQKWYPQTDILAHPNLRLFITHGGISSLMEASSLGVPVLGVPFFGDQYRNMVLL 280
LPDNV + W PQ IL +L F+TH G E + P++ VP DQ+ N +L
Sbjct: 281 LPDNVEVHDWVPQLAILRQADL--FVTHAGAGGSQEGLATATPMIAVPQAVDQFGNADML 338
Query: 281 RHRGYALIEPIQTLTKQSFLKNAQTMLNDPSFKQNAKK 318
+ G A + T + A +++DP + ++
Sbjct: 339 QGLGVARKLATEEATADLLRETALALVDDPEVARRLRR 376
Score = 33.1 bits (74), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Query: 48 LPDNVFIQKWYPQTDILAHPNLRLFITHGGISS 80
LPDNV + W PQ IL + LF+TH G
Sbjct: 281 LPDNVEVHDWVPQLAILRQAD--LFVTHAGAGG 311
>pdb|2IYA|A Chain A, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
pdb|2IYA|B Chain B, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
Length = 424
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 45/94 (47%), Gaps = 2/94 (2%)
Query: 221 LPDNVFIQKWYPQTDILAHPNLRLFITHGGISSLMEASSLGVPVLGVPFFGDQYRNMVLL 280
+P NV + +W PQ DIL + FITH G+ S MEA S VP++ VP +Q N +
Sbjct: 303 VPPNVEVHQWVPQLDILTKASA--FITHAGMGSTMEALSNAVPMVAVPQIAEQTMNAERI 360
Query: 281 RHRGYALIEPIQTLTKQSFLKNAQTMLNDPSFKQ 314
G P +T + + + +DP +
Sbjct: 361 VELGLGRHIPRDQVTAEKLREAVLAVASDPGVAE 394
Score = 34.3 bits (77), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
Query: 48 LPDNVFIQKWYPQTDILAHPNLRLFITHGGISSLMN 83
+P NV + +W PQ DIL + FITH G+ S M
Sbjct: 303 VPPNVEVHQWVPQLDILTKAS--AFITHAGMGSTME 336
>pdb|2C1X|A Chain A, Structure And Activity Of A Flavonoid 3-O
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
pdb|2C1Z|A Chain A, Structure And Activity Of A Flavonoid 3-O
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
pdb|2C9Z|A Chain A, Structure And Activity Of A Flavonoid 3-0
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
Length = 456
Score = 52.4 bits (124), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 32/47 (68%)
Query: 230 WYPQTDILAHPNLRLFITHGGISSLMEASSLGVPVLGVPFFGDQYRN 276
W PQ ++LAH + F+TH G +SL E+ + GVP++ PFFGDQ N
Sbjct: 332 WAPQAEVLAHEAVGAFVTHCGWNSLWESVAGGVPLICRPFFGDQRLN 378
Score = 34.7 bits (78), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 47/107 (43%), Gaps = 24/107 (22%)
Query: 1 MSFGSVVDPTKLSEETKLGFLEVFKQLKLPIFWKIDITNDPVLNAKT-LPDNVFIQK--- 56
+SFG+V P + E + ++P W + A+ LP+ F++K
Sbjct: 276 ISFGTVTTPPPAE---VVALSEALEASRVPFIWSLRD------KARVHLPEG-FLEKTRG 325
Query: 57 ------WYPQTDILAHPNLRLFITHGGISSLMNWNRYGTGGALPNLC 97
W PQ ++LAH + F+TH G +SL W G +P +C
Sbjct: 326 YGMVVPWAPQAEVLAHEAVGAFVTHCGWNSL--WE--SVAGGVPLIC 368
>pdb|2PQ6|A Chain A, Crystal Structure Of Medicago Truncatula Ugt85h2- Insights
Into The Structural Basis Of A Multifunctional (Iso)
Flavonoid Glycosyltransferase
Length = 482
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 31/53 (58%)
Query: 221 LPDNVFIQKWYPQTDILAHPNLRLFITHGGISSLMEASSLGVPVLGVPFFGDQ 273
+ D I W PQ +L HP++ F+TH G +S E+ GVP+L PFF DQ
Sbjct: 351 IADRGLIASWCPQDKVLNHPSIGGFLTHCGWNSTTESICAGVPMLCWPFFADQ 403
Score = 32.0 bits (71), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 23/52 (44%), Gaps = 8/52 (15%)
Query: 48 LPDNVFIQKWYPQTDILAHPNLRLFITHGGISSLMNWNRYGTG--GALPNLC 97
+ D I W PQ +L HP++ F+TH G WN +P LC
Sbjct: 351 IADRGLIASWCPQDKVLNHPSIGGFLTHCG------WNSTTESICAGVPMLC 396
>pdb|2VCE|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
pdb|2VCH|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-Glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
pdb|2VG8|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-Glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
Length = 480
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 35/61 (57%)
Query: 230 WYPQTDILAHPNLRLFITHGGISSLMEASSLGVPVLGVPFFGDQYRNMVLLRHRGYALIE 289
W PQ +LAHP+ F+TH G +S +E+ G+P++ P + +Q N VLL A +
Sbjct: 346 WAPQAQVLAHPSTGGFLTHCGWNSTLESVVSGIPLIAWPLYAEQKMNAVLLSEDIRAALR 405
Query: 290 P 290
P
Sbjct: 406 P 406
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 57 WYPQTDILAHPNLRLFITHGGISSLMN 83
W PQ +LAHP+ F+TH G +S +
Sbjct: 346 WAPQAQVLAHPSTGGFLTHCGWNSTLE 372
>pdb|2ACV|A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1
pdb|2ACV|B Chain B, Crystal Structure Of Medicago Truncatula Ugt71g1
Length = 463
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 36/62 (58%), Gaps = 1/62 (1%)
Query: 227 IQKWYPQTDILAHPNLRLFITHGGISSLMEASSLGVPVLGVPFFGDQYRNMV-LLRHRGY 285
I W PQ ++LAH + F++H G +S++E+ GVP+L P + +Q N L++ G
Sbjct: 336 ICGWAPQVEVLAHKAIGGFVSHCGWNSILESMWFGVPILTWPIYAEQQLNAFRLVKEWGV 395
Query: 286 AL 287
L
Sbjct: 396 GL 397
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 21/36 (58%)
Query: 54 IQKWYPQTDILAHPNLRLFITHGGISSLMNWNRYGT 89
I W PQ ++LAH + F++H G +S++ +G
Sbjct: 336 ICGWAPQVEVLAHKAIGGFVSHCGWNSILESMWFGV 371
>pdb|2ACW|A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1 Complexed
With Udp-Glucose
pdb|2ACW|B Chain B, Crystal Structure Of Medicago Truncatula Ugt71g1 Complexed
With Udp-Glucose
Length = 465
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 36/62 (58%), Gaps = 1/62 (1%)
Query: 227 IQKWYPQTDILAHPNLRLFITHGGISSLMEASSLGVPVLGVPFFGDQYRNMV-LLRHRGY 285
I W PQ ++LAH + F++H G +S++E+ GVP+L P + +Q N L++ G
Sbjct: 336 ICGWAPQVEVLAHKAIGGFVSHCGWNSILESMWFGVPILTWPIYAEQQLNAFRLVKEWGV 395
Query: 286 AL 287
L
Sbjct: 396 GL 397
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 21/36 (58%)
Query: 54 IQKWYPQTDILAHPNLRLFITHGGISSLMNWNRYGT 89
I W PQ ++LAH + F++H G +S++ +G
Sbjct: 336 ICGWAPQVEVLAHKAIGGFVSHCGWNSILESMWFGV 371
>pdb|4G2T|A Chain A, Crystal Structure Of Streptomyces Sp. Sf2575
Glycosyltransferase Ssfs6, Complexed With Thymidine
Diphosphate
Length = 397
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 47/103 (45%), Gaps = 2/103 (1%)
Query: 219 KTLPDNVFIQKWYPQTDILAHPNLRLFITHGGISSLMEASSLGVPVLGVPFFGDQYRNMV 278
+ LP+ V +P + I P + + HGG + + S GVP + VP + + +
Sbjct: 279 QPLPEGVLAAGQFPLSAIX--PACDVVVHHGGHGTTLTCLSEGVPQVSVPVIAEVWDSAR 336
Query: 279 LLRHRGYALIEPIQTLTKQSFLKNAQTMLNDPSFKQNAKKWAS 321
LL G + P + +S L + +D S+ NA++ A+
Sbjct: 337 LLHAAGAGVEVPWEQAGVESVLAACARIRDDSSYVGNARRLAA 379
>pdb|4FZR|A Chain A, Crystal Structure Of Ssfs6, Streptomyces Sp. Sf2575
Glycosyltransferase
Length = 398
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 47/103 (45%), Gaps = 2/103 (1%)
Query: 219 KTLPDNVFIQKWYPQTDILAHPNLRLFITHGGISSLMEASSLGVPVLGVPFFGDQYRNMV 278
+ LP+ V +P + I P + + HGG + + S GVP + VP + + +
Sbjct: 280 QPLPEGVLAAGQFPLSAI--XPACDVVVHHGGHGTTLTCLSEGVPQVSVPVIAEVWDSAR 337
Query: 279 LLRHRGYALIEPIQTLTKQSFLKNAQTMLNDPSFKQNAKKWAS 321
LL G + P + +S L + +D S+ NA++ A+
Sbjct: 338 LLHAAGAGVEVPWEQAGVESVLAACARIRDDSSYVGNARRLAA 380
>pdb|3OTG|A Chain A, Crystal Structure Of Calg1, Calicheamicin
Glycostyltransferase, Tdp Bound Form
pdb|3OTH|A Chain A, Crystal Structure Of Calg1, Calicheamicin
Glycostyltransferase, Tdp And Calicheamicin Alpha3i
Bound Form
pdb|3OTH|B Chain B, Crystal Structure Of Calg1, Calicheamicin
Glycostyltransferase, Tdp And Calicheamicin Alpha3i
Bound Form
Length = 412
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 36/68 (52%), Gaps = 5/68 (7%)
Query: 210 ITNDPVLNAKTL---PDNVFIQKWYPQTDILAHPNLRLFITHGGISSLMEASSLGVPVLG 266
+ + P L+ L P NV ++ W PQ +L P++ L + HGG + + A GVP L
Sbjct: 276 VASGPSLDVSGLGEVPANVRLESWVPQAALL--PHVDLVVHHGGSGTTLGALGAGVPQLS 333
Query: 267 VPFFGDQY 274
P+ GD +
Sbjct: 334 FPWAGDSF 341
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 30/64 (46%), Gaps = 9/64 (14%)
Query: 37 ITNDPVLNAKTL---PDNVFIQKWYPQTDILAHPNLRLFITHGGISSLMNWNRYGTGGAL 93
+ + P L+ L P NV ++ W PQ +L P++ L + HGG + + G +
Sbjct: 276 VASGPSLDVSGLGEVPANVRLESWVPQAALL--PHVDLVVHHGGSGTTLGA----LGAGV 329
Query: 94 PNLC 97
P L
Sbjct: 330 PQLS 333
>pdb|3IA7|A Chain A, Crystal Structure Of Calg4, The Calicheamicin
Glycosyltransferase
pdb|3IA7|B Chain B, Crystal Structure Of Calg4, The Calicheamicin
Glycosyltransferase
Length = 402
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 31/53 (58%), Gaps = 2/53 (3%)
Query: 221 LPDNVFIQKWYPQTDILAHPNLRLFITHGGISSLMEASSLGVPVLGVPFFGDQ 273
LP NV +W P +LAH R +THG +++EA + GVP++ VP F +
Sbjct: 279 LPPNVEAHQWIPFHSVLAH--ARACLTHGTTGAVLEAFAAGVPLVLVPHFATE 329
>pdb|3UYK|A Chain A, Spinosyn Rhamnosyltransferase Spng Complexed With Spinosyn
Aglycone
pdb|3UYK|B Chain B, Spinosyn Rhamnosyltransferase Spng Complexed With Spinosyn
Aglycone
pdb|3UYL|A Chain A, Spinosyn Rhamnosyltransferase Spng Complexed With
Thymidine Diphosphate
pdb|3UYL|B Chain B, Spinosyn Rhamnosyltransferase Spng Complexed With
Thymidine Diphosphate
Length = 387
Score = 38.1 bits (87), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 46/111 (41%), Gaps = 8/111 (7%)
Query: 221 LPDNVFIQKWYPQTDILAHPNLRLFITHGGISSLMEASSLGVPVLGVPFFGDQYRNMVLL 280
LPDN I + P L L I GG + A+ LG+P L +P + DQ+ L
Sbjct: 268 LPDNARIAESVPLNLFLR--TCELVICAGGSGTAFTATRLGIPQLVLPQYFDQFDYARNL 325
Query: 281 RHRGYALIEPIQTLTK--QSFLKNAQTMLNDPSFKQNAKKWASIANDEIVS 329
G + P + + F + T+L D F A K +DEI +
Sbjct: 326 AAAGAGICLPDEQAQSDHEQFTDSIATVLGDTGFAAAAIKL----SDEITA 372
>pdb|3TSA|A Chain A, Spinosyn Rhamnosyltransferase Spng
pdb|3TSA|B Chain B, Spinosyn Rhamnosyltransferase Spng
Length = 391
Score = 37.7 bits (86), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 46/111 (41%), Gaps = 8/111 (7%)
Query: 221 LPDNVFIQKWYPQTDILAHPNLRLFITHGGISSLMEASSLGVPVLGVPFFGDQYRNMVLL 280
LPDN I + P L L I GG + A+ LG+P L +P + DQ+ L
Sbjct: 268 LPDNARIAESVPLNLFLR--TCELVICAGGSGTAFTATRLGIPQLVLPQYFDQFDYARNL 325
Query: 281 RHRGYALIEPIQTLTK--QSFLKNAQTMLNDPSFKQNAKKWASIANDEIVS 329
G + P + + F + T+L D F A K +DEI +
Sbjct: 326 AAAGAGICLPDEQAQSDHEQFTDSIATVLGDTGFAAAAIKL----SDEITA 372
>pdb|3IAA|A Chain A, Crystal Structure Of Calg2, Calicheamicin
Glycosyltransferase, Tdp Bound Form
pdb|3IAA|B Chain B, Crystal Structure Of Calg2, Calicheamicin
Glycosyltransferase, Tdp Bound Form
Length = 416
Score = 34.3 bits (77), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Query: 221 LPDNVFIQKWYPQTDILAHPNLRLFITHGGISSLMEASSLGVPVLGVP 268
LP NV +W P +L + +THGG +L EA G P++ VP
Sbjct: 295 LPPNVEAHRWVPHVKVLEQATV--CVTHGGXGTLXEALYWGRPLVVVP 340
>pdb|3RSC|A Chain A, Crystal Structure Of Calg2, Calicheamicin
Glycosyltransferase, Tdp And Calicheamicin T0 Bound Form
pdb|3RSC|B Chain B, Crystal Structure Of Calg2, Calicheamicin
Glycosyltransferase, Tdp And Calicheamicin T0 Bound Form
Length = 415
Score = 34.3 bits (77), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Query: 221 LPDNVFIQKWYPQTDILAHPNLRLFITHGGISSLMEASSLGVPVLGVP 268
LP NV +W P +L + +THGG +L EA G P++ VP
Sbjct: 295 LPPNVEAHRWVPHVKVLEQATV--CVTHGGXGTLXEALYWGRPLVVVP 340
>pdb|3D0R|A Chain A, Crystal Structure Of Calg3 From Micromonospora Echinospora
Determined In Space Group P2(1)
pdb|3D0R|B Chain B, Crystal Structure Of Calg3 From Micromonospora Echinospora
Determined In Space Group P2(1)
pdb|3OTI|A Chain A, Crystal Structure Of Calg3, Calicheamicin
Glycostyltransferase, Tdp And Calicheamicin T0 Bound
Form
pdb|3OTI|B Chain B, Crystal Structure Of Calg3, Calicheamicin
Glycostyltransferase, Tdp And Calicheamicin T0 Bound
Form
Length = 398
Score = 32.3 bits (72), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 42/101 (41%), Gaps = 8/101 (7%)
Query: 220 TLPDNVFIQKWYPQTDILAHPNLRLFITHGGISSLMEASSLGVPVLGVPFFGDQYRNMV- 278
TLP NV W P +L + HGG ++M A G+P L P DQ+++
Sbjct: 280 TLPRNVRAVGWTPLHTLLR--TCTAVVHHGGGGTVMTAIDAGIPQLLAPDPRDQFQHTAR 337
Query: 279 -LLRHRGYALIEPIQTLTKQSFLKNAQTMLNDPSFKQNAKK 318
+ RG L+ + + ++ D S + A++
Sbjct: 338 EAVSRRGIGLVSTSDKVDADLLRR----LIGDESLRTAARE 374
>pdb|4AMB|A Chain A, Crystal Structure Of The Glycosyltransferase Snogd From
Streptomyces Nogalater
pdb|4AMB|B Chain B, Crystal Structure Of The Glycosyltransferase Snogd From
Streptomyces Nogalater
Length = 400
Score = 31.6 bits (70), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 24/97 (24%), Positives = 40/97 (41%), Gaps = 6/97 (6%)
Query: 222 PDNVFIQKWYPQTDILAHPNLRLFITHGGISSLMEASSLGVPVLGVPFFGDQYRNMVLLR 281
P NV + +W P +L I HGG +L+ A + GVP +P Q N +L
Sbjct: 287 PANVRVVEWIPLGALLE--TCDAIIHHGGSGTLLTALAAGVPQCVIPHGSYQDTNRDVLT 344
Query: 282 HRGYALIEPIQTLTKQSFLKNAQTMLNDPSFKQNAKK 318
G +L + + +L+D ++ A +
Sbjct: 345 GLGIGFDAEAGSLGAE----QCRRLLDDAGLREAALR 377
>pdb|4AMG|A Chain A, Crystal Structure Of The Glycosyltransferase Snogd From
Streptomyces Nogalater
pdb|4AMG|B Chain B, Crystal Structure Of The Glycosyltransferase Snogd From
Streptomyces Nogalater
pdb|4AN4|A Chain A, Crystal Structure Of The Glycosyltransferase Snogd From
Streptomyces Nogalater
pdb|4AN4|B Chain B, Crystal Structure Of The Glycosyltransferase Snogd From
Streptomyces Nogalater
pdb|4AN4|C Chain C, Crystal Structure Of The Glycosyltransferase Snogd From
Streptomyces Nogalater
pdb|4AN4|D Chain D, Crystal Structure Of The Glycosyltransferase Snogd From
Streptomyces Nogalater
Length = 400
Score = 31.2 bits (69), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 24/97 (24%), Positives = 40/97 (41%), Gaps = 6/97 (6%)
Query: 222 PDNVFIQKWYPQTDILAHPNLRLFITHGGISSLMEASSLGVPVLGVPFFGDQYRNMVLLR 281
P NV + +W P +L I HGG +L+ A + GVP +P Q N +L
Sbjct: 287 PANVRVVEWIPLGALLE--TCDAIIHHGGSGTLLTALAAGVPQCVIPHGSYQDTNRDVLT 344
Query: 282 HRGYALIEPIQTLTKQSFLKNAQTMLNDPSFKQNAKK 318
G +L + + +L+D ++ A +
Sbjct: 345 GLGIGFDAEAGSLGAE----QCRRLLDDAGLREAALR 377
>pdb|3D0Q|A Chain A, Crystal Structure Of Calg3 From Micromonospora Echinospora
Determined In Space Group I222
pdb|3D0Q|B Chain B, Crystal Structure Of Calg3 From Micromonospora Echinospora
Determined In Space Group I222
Length = 398
Score = 29.6 bits (65), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 24/101 (23%), Positives = 41/101 (40%), Gaps = 8/101 (7%)
Query: 220 TLPDNVFIQKWYPQTDILAHPNLRLFITHGGISSLMEASSLGVPVLGVPFFGDQYRNMV- 278
TLP NV W P +L + HGG ++ A G+P L P DQ+++
Sbjct: 280 TLPRNVRAVGWTPLHTLLR--TCTAVVHHGGGGTVXTAIDAGIPQLLAPDPRDQFQHTAR 337
Query: 279 -LLRHRGYALIEPIQTLTKQSFLKNAQTMLNDPSFKQNAKK 318
+ RG L+ + + ++ D S + A++
Sbjct: 338 EAVSRRGIGLVSTSDKVDADLLRR----LIGDESLRTAARE 374
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.137 0.428
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,684,435
Number of Sequences: 62578
Number of extensions: 468592
Number of successful extensions: 924
Number of sequences better than 100.0: 23
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 886
Number of HSP's gapped (non-prelim): 40
length of query: 403
length of database: 14,973,337
effective HSP length: 101
effective length of query: 302
effective length of database: 8,652,959
effective search space: 2613193618
effective search space used: 2613193618
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)