RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy16938
(403 letters)
>2o6l_A UDP-glucuronosyltransferase 2B7; drug metabolism, rossman, MAD,
enzyme, nucleotide binding,
sugar,UDP-glucuronosyltransferase, UGT; 1.80A {Homo
sapiens}
Length = 170
Score = 166 bits (422), Expect = 3e-50
Identities = 47/141 (33%), Positives = 73/141 (51%), Gaps = 5/141 (3%)
Query: 185 LSEETKLGFLEVFKQLKLPIFWKIDITNDPVLNAKTLPDNVFIQKWYPQTDILAHPNLRL 244
++EE Q+ + W+ D TL N + KW PQ D+L HP R
Sbjct: 35 MTEERANVIASALAQIPQKVLWRFDGNKPD-----TLGLNTRLYKWIPQNDLLGHPKTRA 89
Query: 245 FITHGGISSLMEASSLGVPVLGVPFFGDQYRNMVLLRHRGYALIEPIQTLTKQSFLKNAQ 304
FITHGG + + EA G+P++G+P F DQ N+ ++ RG A+ T++ L +
Sbjct: 90 FITHGGANGIYEAIYHGIPMVGIPLFADQPDNIAHMKARGAAVRVDFNTMSSTDLLNALK 149
Query: 305 TMLNDPSFKQNAKKWASIAND 325
++NDPS+K+N K + I +D
Sbjct: 150 RVINDPSYKENVMKLSRIQHD 170
Score = 96.9 bits (242), Expect = 3e-24
Identities = 27/82 (32%), Positives = 38/82 (46%), Gaps = 7/82 (8%)
Query: 1 MSFGSVVDPTKLSEETKLGFLEVFKQLKLPIFWKIDITNDPVLNAKTLPDNVFIQKWYPQ 60
S GS+V + ++EE Q+ + W+ D TL N + KW PQ
Sbjct: 26 FSLGSMV--SNMTEERANVIASALAQIPQKVLWRFDGNKPD-----TLGLNTRLYKWIPQ 78
Query: 61 TDILAHPNLRLFITHGGISSLM 82
D+L HP R FITHGG + +
Sbjct: 79 NDLLGHPKTRAFITHGGANGIY 100
>2iya_A OLEI, oleandomycin glycosyltransferase; carbohydrate,
glycosylation, enzyme, macrolide; HET: UDP ZIO; 1.7A
{Streptomyces antibioticus}
Length = 424
Score = 122 bits (308), Expect = 3e-31
Identities = 37/153 (24%), Positives = 55/153 (35%), Gaps = 5/153 (3%)
Query: 194 LEVFKQLKLPIFWKIDITNDPVLNAKTLPDNVFIQKWYPQTDILAHPNLRLFITHGGISS 253
L L + + DP +P NV + +W PQ DIL FITH G+ S
Sbjct: 277 LSAVDGLDWHVVLSVGRFVDPAD-LGEVPPNVEVHQWVPQLDILTK--ASAFITHAGMGS 333
Query: 254 LMEASSLGVPVLGVPFFGDQYRNMVLLRHRGYALIEPIQTLTKQSFLKNAQTMLNDPSFK 313
MEA S VP++ VP +Q N + G P +T + + + +DP
Sbjct: 334 TMEALSNAVPMVAVPQIAEQTMNAERIVELGLGRHIPRDQVTAEKLREAVLAVASDPGVA 393
Query: 314 QNAKKWASIANDEIVSPLERVVYWTEYVLRHKG 346
+ + E +L G
Sbjct: 394 ERLAAVRQEIREA--GGARAAADILEGILAEAG 424
Score = 53.2 bits (128), Expect = 7e-08
Identities = 23/82 (28%), Positives = 30/82 (36%), Gaps = 8/82 (9%)
Query: 2 SFGSVV-DPTKLSEETKLGFLEVFKQLKLPIFWKIDITNDPVLNAKTLPDNVFIQKWYPQ 60
+ GS D L L + + DP +P NV + +W PQ
Sbjct: 261 ALGSAFTDHLDFYRTC----LSAVDGLDWHVVLSVGRFVDPAD-LGEVPPNVEVHQWVPQ 315
Query: 61 TDILAHPNLRLFITHGGISSLM 82
DIL FITH G+ S M
Sbjct: 316 LDILTK--ASAFITHAGMGSTM 335
Score = 40.5 bits (95), Expect = 6e-04
Identities = 15/80 (18%), Positives = 27/80 (33%), Gaps = 5/80 (6%)
Query: 120 KILVFLPLPIWSHQMQYEKVWTALAERGHEVTIYT--KFTPKSNSTNLKHVPIRLPKIDA 177
I F +P H + L RGH V+ +F + + V I
Sbjct: 14 HIS-FFNIPGHGHVNPSLGIVQELVARGHRVSYAITDEFAAQVKAAGATPVV--YDSILP 70
Query: 178 RMIDPTKLSEETKLGFLEVF 197
+ +P + E + + +F
Sbjct: 71 KESNPEESWPEDQESAMGLF 90
>2iyf_A OLED, oleandomycin glycosyltransferase; antibiotic resistance,
glycosylation, enzyme, macrolide, carbohydrate; HET: ERY
UDP; 1.7A {Streptomyces antibioticus}
Length = 430
Score = 121 bits (306), Expect = 5e-31
Identities = 37/166 (22%), Positives = 57/166 (34%), Gaps = 7/166 (4%)
Query: 193 FLEVFKQLKLPIFWKIDITNDPVLNAKTLPDNVFIQKWYPQTDILAHPNLRLFITHGGIS 252
+ F L LPDNV + W PQ IL LF+TH G
Sbjct: 253 CVRAFGNLPGWHLVLQIGRKVTPAELGELPDNVEVHDWVPQLAILRQA--DLFVTHAGAG 310
Query: 253 SLMEASSLGVPVLGVPFFGDQYRNMVLLRHRGYALIEPIQTLTKQSFLKNAQTMLNDPSF 312
E + P++ VP DQ+ N +L+ G A + T + A +++DP
Sbjct: 311 GSQEGLATATPMIAVPQAVDQFGNADMLQGLGVARKLATEEATADLLRETALALVDDPEV 370
Query: 313 KQNAKKWASIANDEIVSPLERVV--YWTEYVLRHKG-APHLSASSR 355
+ ++ + E R E RH+ P +
Sbjct: 371 ARRLRRIQAEMAQE--GGTRRAADLIEAELPARHERQEPVGDRPNV 414
Score = 56.3 bits (136), Expect = 6e-09
Identities = 20/82 (24%), Positives = 24/82 (29%), Gaps = 5/82 (6%)
Query: 1 MSFGSVVDPTKLSEETKLGFLEVFKQLKLPIFWKIDITNDPVLNAKTLPDNVFIQKWYPQ 60
+S GS + F L LPDNV + W PQ
Sbjct: 237 VSLGSAFTKQ---PAFYRECVRAFGNLPGWHLVLQIGRKVTPAELGELPDNVEVHDWVPQ 293
Query: 61 TDILAHPNLRLFITHGGISSLM 82
IL LF+TH G
Sbjct: 294 LAILRQA--DLFVTHAGAGGSQ 313
Score = 43.2 bits (102), Expect = 1e-04
Identities = 19/80 (23%), Positives = 24/80 (30%), Gaps = 5/80 (6%)
Query: 120 KILVFLPLPIWSHQMQYEKVWTALAERGHEVTIYT--KFTPKSNSTNLKHVPIR--LPKI 175
I + H +V L RGH VT F K +T + V LP
Sbjct: 9 HIA-MFSIAAHGHVNPSLEVIRELVARGHRVTYAIPPVFADKVAATGPRPVLYHSTLPGP 67
Query: 176 DARMIDPTKLSEETKLGFLE 195
DA + FL
Sbjct: 68 DADPEAWGSTLLDNVEPFLN 87
>3ia7_A CALG4; glycosysltransferase, calicheamicin, enediyne, transf; 1.91A
{Micromonospora echinospora}
Length = 402
Score = 102 bits (255), Expect = 3e-24
Identities = 32/154 (20%), Positives = 56/154 (36%), Gaps = 6/154 (3%)
Query: 194 LEVFKQLKLPIFWKIDITNDPVLNAKTLPDNVFIQKWYPQTDILAHPNLRLFITHGGISS 253
+ F + I DP + LP NV +W P +LAH R +THG +
Sbjct: 253 AQAFADTPWHVVMAIGGFLDPAV-LGPLPPNVEAHQWIPFHSVLAH--ARACLTHGTTGA 309
Query: 254 LMEASSLGVPVLGVPFFG-DQYRNMVLLRHRGYALIEPIQTLTKQSFLKNAQTMLNDPSF 312
++EA + GVP++ VP F + + + G + L S + + + D +
Sbjct: 310 VLEAFAAGVPLVLVPHFATEAAPSAERVIELGLGSVLRPDQLEPASIREAVERLAADSAV 369
Query: 313 KQNAKKWASIANDEIVSPLERVVYWTEYVLRHKG 346
++ ++ R E L
Sbjct: 370 RERVRRMQRDILSS--GGPARAADEVEAYLGRVA 401
Score = 49.3 bits (118), Expect = 1e-06
Identities = 19/82 (23%), Positives = 31/82 (37%), Gaps = 8/82 (9%)
Query: 2 SFGSVV-DPTKLSEETKLGFLEVFKQLKLPIFWKIDITNDPVLNAKTLPDNVFIQKWYPQ 60
S G+ + + + F + I DP + LP NV +W P
Sbjct: 237 SLGNQFNEHPEFFRAC----AQAFADTPWHVVMAIGGFLDPAV-LGPLPPNVEAHQWIPF 291
Query: 61 TDILAHPNLRLFITHGGISSLM 82
+LAH R +THG +++
Sbjct: 292 HSVLAH--ARACLTHGTTGAVL 311
Score = 39.3 bits (92), Expect = 0.002
Identities = 16/80 (20%), Positives = 29/80 (36%), Gaps = 4/80 (5%)
Query: 120 KILVFLPLPIWSHQMQYEKVWTALAERGHEVTIYT--KFTPKSNSTNLKHVPIRLPKIDA 177
IL F + H + + LA RGH +T T F + + + V + + D
Sbjct: 6 HIL-FANVQGHGHVYPSLGLVSELARRGHRITYVTTPLFADEVKAAGAEVVLYK-SEFDT 63
Query: 178 RMIDPTKLSEETKLGFLEVF 197
+ E+ + V+
Sbjct: 64 FHVPEVVKQEDAETQLHLVY 83
>3rsc_A CALG2; TDP, enediyne, structural genomics, PSI-2, protein structure
initiative, center for eukaryotic structural genomics;
HET: TYD C0T; 2.19A {Micromonospora echinospora} PDB:
3iaa_A*
Length = 415
Score = 95.5 bits (238), Expect = 9e-22
Identities = 26/121 (21%), Positives = 44/121 (36%), Gaps = 7/121 (5%)
Query: 220 TLPDNVFIQKWYPQTDILAHPNLRLFITHGGISSLMEASSLGVPVLGVPFFGDQYRNMVL 279
LP NV +W P +L + +THGG+ +LMEA G P++ VP D
Sbjct: 294 DLPPNVEAHRWVPHVKVLEQ--ATVCVTHGGMGTLMEALYWGRPLVVVPQSFDVQPMARR 351
Query: 280 LRHRGYALIEPIQTLTKQSFLKNAQTMLNDPSFKQNAKKW-ASIAN----DEIVSPLERV 334
+ G + P + + L + DP+ + + +E
Sbjct: 352 VDQLGLGAVLPGEKADGDTLLAAVGAVAADPALLARVEAMRGHVRRAGGAARAADAVEAY 411
Query: 335 V 335
+
Sbjct: 412 L 412
Score = 44.7 bits (106), Expect = 4e-05
Identities = 19/82 (23%), Positives = 29/82 (35%), Gaps = 8/82 (9%)
Query: 2 SFGSVV-DPTKLSEETKLGFLEVFKQLKLPIFWKIDITNDPVLNAKTLPDNVFIQKWYPQ 60
S G+ D + F + + DP LP NV +W P
Sbjct: 253 SLGTTFNDRPGFFRDC----ARAFDGQPWHVVMTLGGQVDPAA-LGDLPPNVEAHRWVPH 307
Query: 61 TDILAHPNLRLFITHGGISSLM 82
+L + +THGG+ +LM
Sbjct: 308 VKVLEQ--ATVCVTHGGMGTLM 327
Score = 35.4 bits (82), Expect = 0.030
Identities = 15/65 (23%), Positives = 23/65 (35%), Gaps = 3/65 (4%)
Query: 120 KILVFLPLPIWSHQMQYEKVWTALAERGHEVTIYT--KFTPKSNSTNLKHVPIRLPKIDA 177
+L + + + V T L RGH V+ T F + VP + IDA
Sbjct: 22 HLL-IVNVASHGLILPTLTVVTELVRRGHRVSYVTAGGFAEPVRAAGATVVPYQSEIIDA 80
Query: 178 RMIDP 182
+
Sbjct: 81 DAAEV 85
>3otg_A CALG1; calicheamicin, TDP, structural genomics, PSI-2, protein STRU
initiative, center for eukaryotic structural genomics,
CESG fold; HET: TYD; 2.08A {Micromonospora echinospora}
PDB: 3oth_A*
Length = 412
Score = 91.7 bits (228), Expect = 2e-20
Identities = 34/121 (28%), Positives = 54/121 (44%), Gaps = 7/121 (5%)
Query: 220 TLPDNVFIQKWYPQTDILAHPNLRLFITHGGISSLMEASSLGVPVLGVPFFGDQYRNMVL 279
+P NV ++ W PQ +L H + L + HGG + + A GVP L P+ GD + N
Sbjct: 289 EVPANVRLESWVPQAALLPH--VDLVVHHGGSGTTLGALGAGVPQLSFPWAGDSFANAQA 346
Query: 280 LRHRGYALIEPIQTLTKQSFLKNAQTMLNDPSFKQNAKKW-ASIAN----DEIVSPLERV 334
+ G ++ S A+ +L + S++ A+ A IA DE+V L
Sbjct: 347 VAQAGAGDHLLPDNISPDSVSGAAKRLLAEESYRAGARAVAAEIAAMPGPDEVVRLLPGF 406
Query: 335 V 335
Sbjct: 407 A 407
Score = 43.1 bits (102), Expect = 1e-04
Identities = 12/36 (33%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Query: 47 TLPDNVFIQKWYPQTDILAHPNLRLFITHGGISSLM 82
+P NV ++ W PQ +L H + L + HGG + +
Sbjct: 289 EVPANVRLESWVPQAALLPH--VDLVVHHGGSGTTL 322
Score = 38.1 bits (89), Expect = 0.004
Identities = 22/134 (16%), Positives = 41/134 (30%), Gaps = 23/134 (17%)
Query: 142 ALAERGHEVTIYT--KFTPKSNSTNLKHVPIRLPKIDA--RMIDPTKLSEETKLGFLEVF 197
A GHEVT T F + V +P D + ++ + E
Sbjct: 43 AARAAGHEVTFATGEGFAGTLRKLGFEPVATGMPVFDGFLAALRIRFDTDSPEGLTPEQL 102
Query: 198 KQLKLPIFWKIDITNDPVLNAKTLPDNV-FIQKWYPQTD-ILAHPNLRLFITHGGISSLM 255
+L +F V+ + + I++ P D ++ +G +
Sbjct: 103 SELPQIVFG-------RVIPQRVFDELQPVIERLRP--DLVVQEI-----SNYGA---GL 145
Query: 256 EASSLGVPVLGVPF 269
A G+P +
Sbjct: 146 AALKAGIPTICHGV 159
>2yjn_A ERYCIII, glycosyltransferase; transferase, cytochrome P450; 3.09A
{Saccharopolyspora erythraea}
Length = 441
Score = 89.5 bits (222), Expect = 9e-20
Identities = 27/121 (22%), Positives = 48/121 (39%), Gaps = 7/121 (5%)
Query: 220 TLPDNVFIQKWYPQTDILAHPNLRLFITHGGISSLMEASSLGVPVLGVPFFGDQYRNMVL 279
+PDNV + P +L + HGG S A+ GVP + +P D
Sbjct: 316 NIPDNVRTVGFVPMHALLPT--CAATVHHGGPGSWHTAAIHGVPQVILPDGWDTGVRAQR 373
Query: 280 LRHRGYALIEPIQTLTKQSFLKNAQTMLNDPSFKQNAKKWA-SIAN----DEIVSPLERV 334
+ G + P+ LT ++ + +L+DP+ + A + + E+V E +
Sbjct: 374 TQEFGAGIALPVPELTPDQLRESVKRVLDDPAHRAGAARMRDDMLAEPSPAEVVGICEEL 433
Query: 335 V 335
Sbjct: 434 A 434
Score = 40.2 bits (94), Expect = 8e-04
Identities = 10/36 (27%), Positives = 14/36 (38%), Gaps = 2/36 (5%)
Query: 47 TLPDNVFIQKWYPQTDILAHPNLRLFITHGGISSLM 82
+PDNV + P +L + HGG S
Sbjct: 316 NIPDNVRTVGFVPMHALLPT--CAATVHHGGPGSWH 349
Score = 35.9 bits (83), Expect = 0.021
Identities = 12/53 (22%), Positives = 20/53 (37%), Gaps = 3/53 (5%)
Query: 120 KILVFLPLPIWSHQMQYEKVWTALAERGHEVTIYT--KFTPKSNSTNLKHVPI 170
+++ F + SH + A GHEV + T + L VP+
Sbjct: 22 RVV-FSSMASKSHLFGLVPLAWAFRAAGHEVRVVASPALTEDITAAGLTAVPV 73
>4fzr_A SSFS6; structural genomics, PSI-biology, protein structure initiati
enzyme discovery for natural product biosynthesis,
natPro; 2.40A {Streptomyces SP} PDB: 4g2t_A*
Length = 398
Score = 86.7 bits (215), Expect = 6e-19
Identities = 29/119 (24%), Positives = 53/119 (44%), Gaps = 7/119 (5%)
Query: 220 TLPDNVFIQKWYPQTDILAHPNLRLFITHGGISSLMEASSLGVPVLGVPFFGDQYRNMVL 279
LP+ V +P + I+ + + HGG + + S GVP + VP + + + L
Sbjct: 281 PLPEGVLAAGQFPLSAIMPA--CDVVVHHGGHGTTLTCLSEGVPQVSVPVIAEVWDSARL 338
Query: 280 LRHRGYALIEPIQTLTKQSFLKNAQTMLNDPSFKQNAKKWA-SIAN----DEIVSPLER 333
L G + P + +S L + +D S+ NA++ A +A +IV +E+
Sbjct: 339 LHAAGAGVEVPWEQAGVESVLAACARIRDDSSYVGNARRLAAEMATLPTPADIVRLIEQ 397
Score = 40.1 bits (94), Expect = 8e-04
Identities = 8/36 (22%), Positives = 16/36 (44%), Gaps = 2/36 (5%)
Query: 47 TLPDNVFIQKWYPQTDILAHPNLRLFITHGGISSLM 82
LP+ V +P + I+ + + HGG + +
Sbjct: 281 PLPEGVLAAGQFPLSAIMPA--CDVVVHHGGHGTTL 314
Score = 30.8 bits (70), Expect = 0.87
Identities = 9/31 (29%), Positives = 10/31 (32%), Gaps = 2/31 (6%)
Query: 142 ALAERGHEVTIYT--KFTPKSNSTNLKHVPI 170
AL GHEV + P L P
Sbjct: 38 ALRAAGHEVLVAASENMGPTVTGAGLPFAPT 68
>3tsa_A SPNG, NDP-rhamnosyltransferase; glycosyltransferase; HET: GLC;
1.70A {Saccharopolyspora spinosa} PDB: 3uyk_A* 3uyl_A*
Length = 391
Score = 86.0 bits (213), Expect = 1e-18
Identities = 33/122 (27%), Positives = 47/122 (38%), Gaps = 9/122 (7%)
Query: 221 LPDNVFIQKWYPQTDILAHPNLRLFITHGGISSLMEASSLGVPVLGVPFFGDQYRNMVLL 280
LPDN I + P L L I GG + A+ LG+P L +P + DQ+ L
Sbjct: 268 LPDNARIAESVPLNLFLRT--CELVICAGGSGTAFTATRLGIPQLVLPQYFDQFDYARNL 325
Query: 281 RHRGYALIEPIQ--TLTKQSFLKNAQTMLNDPSFKQNAKKWA-SIA----NDEIVSPLER 333
G + P + + F + T+L D F A K + I +V LE
Sbjct: 326 AAAGAGICLPDEQAQSDHEQFTDSIATVLGDTGFAAAAIKLSDEITAMPHPAALVRTLEN 385
Query: 334 VV 335
Sbjct: 386 TA 387
Score = 41.3 bits (97), Expect = 4e-04
Identities = 11/35 (31%), Positives = 13/35 (37%), Gaps = 2/35 (5%)
Query: 48 LPDNVFIQKWYPQTDILAHPNLRLFITHGGISSLM 82
LPDN I + P L L I GG +
Sbjct: 268 LPDNARIAESVPLNLFLRT--CELVICAGGSGTAF 300
Score = 31.7 bits (72), Expect = 0.47
Identities = 12/46 (26%), Positives = 16/46 (34%), Gaps = 2/46 (4%)
Query: 142 ALAERGHEVTIYT--KFTPKSNSTNLKHVPIRLPKIDARMIDPTKL 185
AL GHEV I + ++ L IR T+L
Sbjct: 24 ALQASGHEVLIAAPPELQATAHGAGLTTAGIRGNDRTGDTGGTTQL 69
>2p6p_A Glycosyl transferase; X-RAY-diffraction,urdamycina-biosynthesis;
1.88A {Streptomyces fradiae}
Length = 384
Score = 81.8 bits (202), Expect = 3e-17
Identities = 20/121 (16%), Positives = 42/121 (34%), Gaps = 8/121 (6%)
Query: 220 TLPDNVFIQKWYPQTDILAHPNLRLFITHGGISSLMEASSLGVPVLGVPFFGDQYRNMVL 279
+ W P + L + H G S + S GVP L +P
Sbjct: 261 AEVPQARVG-WTPLDVVAPT--CDLLVHHAGGVSTLTGLSAGVPQLLIPKGSVLEAPARR 317
Query: 280 LRHRGYALIEPIQTLTKQSFLKNAQTMLNDPSFKQNAKKWA-SIA----NDEIVSPLERV 334
+ G A+ + ++ + Q + ++ + A+ + I+ +V+ LE++
Sbjct: 318 VADYGAAIALLPGEDSTEAIADSCQELQAKDTYARRAQDLSREISGMPLPATVVTALEQL 377
Query: 335 V 335
Sbjct: 378 A 378
Score = 34.8 bits (80), Expect = 0.042
Identities = 6/36 (16%), Positives = 10/36 (27%), Gaps = 3/36 (8%)
Query: 47 TLPDNVFIQKWYPQTDILAHPNLRLFITHGGISSLM 82
+ W P + L + H G S +
Sbjct: 261 AEVPQARVG-WTPLDVVAPT--CDLLVHHAGGVSTL 293
Score = 31.3 bits (71), Expect = 0.55
Identities = 7/31 (22%), Positives = 9/31 (29%), Gaps = 2/31 (6%)
Query: 142 ALAERGHEVTIYT--KFTPKSNSTNLKHVPI 170
A GH+V + P L V
Sbjct: 23 AARNAGHQVVMAANQDMGPVVTGVGLPAVAT 53
>3oti_A CALG3; calicheamicin, TDP, structural genomics, PSI-2, protein STRU
initiative, center for eukaryotic structural genomics,
CESG fold; HET: TYD C0T; 1.60A {Micromonospora
echinospora} PDB: 3d0q_A* 3d0r_A*
Length = 398
Score = 80.3 bits (198), Expect = 9e-17
Identities = 27/123 (21%), Positives = 47/123 (38%), Gaps = 13/123 (10%)
Query: 220 TLPDNVFIQKWYPQTDILAHPNLRLFITHGGISSLMEASSLGVPVLGVPFFGDQYRNM-- 277
TLP NV W P +L + HGG ++M A G+P L P DQ+++
Sbjct: 280 TLPRNVRAVGWTPLHTLLRT--CTAVVHHGGGGTVMTAIDAGIPQLLAPDPRDQFQHTAR 337
Query: 278 VLLRHRGYALIEPIQTLTKQSFLKNAQTMLNDPSFKQNAKKWA-SIAN----DEIVSPLE 332
+ RG L+ + + ++ D S + A++ + E V +
Sbjct: 338 EAVSRRGIGLVSTSDKVDADL----LRRLIGDESLRTAAREVREEMVALPTPAETVRRIV 393
Query: 333 RVV 335
+
Sbjct: 394 ERI 396
Score = 41.0 bits (96), Expect = 5e-04
Identities = 12/36 (33%), Positives = 16/36 (44%), Gaps = 2/36 (5%)
Query: 47 TLPDNVFIQKWYPQTDILAHPNLRLFITHGGISSLM 82
TLP NV W P +L + HGG ++M
Sbjct: 280 TLPRNVRAVGWTPLHTLLRT--CTAVVHHGGGGTVM 313
Score = 30.2 bits (68), Expect = 1.3
Identities = 29/187 (15%), Positives = 62/187 (33%), Gaps = 25/187 (13%)
Query: 120 KILVFLPLPIWSHQMQYEKVWTALAERGHEVTIYT-KFTPKSNSTNLKHVPIRLPKIDAR 178
++L F+ P H ++ GH+V I + ++ + L+ V + +
Sbjct: 22 RVL-FVSSPGIGHLFPLIQLAWGFRTAGHDVLIAVAEHADRAAAAGLEVVDVAPDYSAVK 80
Query: 179 MIDPTKLSEETKLGFLEVFKQLKLPIFWK-IDITNDPVLNAKTLPDNVFIQKWYPQTDIL 237
+ + + + L + I N P+++ + + P D++
Sbjct: 81 VFEQVAKDNPRFAETVATRPAIDLEEWGVQIAAVNRPLVDG--TMA--LVDDYRP--DLV 134
Query: 238 AHPNLRLFITHGGISSLMEASSLGVPVLGVPFFGDQYRNMV---------LLRHRGYALI 288
+ G L+ A GVP + + R M L+ +L
Sbjct: 135 VYEQG----ATVG---LLAADRAGVPAVQRNQSAWRTRGMHRSIASFLTDLMDKHQVSLP 187
Query: 289 EPIQTLT 295
EP+ T+
Sbjct: 188 EPVATIE 194
>1iir_A Glycosyltransferase GTFB; rossmann fold; 1.80A {Amycolatopsis
orientalis} SCOP: c.87.1.5
Length = 415
Score = 77.2 bits (190), Expect = 1e-15
Identities = 24/128 (18%), Positives = 35/128 (27%), Gaps = 7/128 (5%)
Query: 221 LPDNVFIQKWYPQTDILAHPNLRLFITHGGISSLMEASSLGVPVLGVPFFGDQYRNMVLL 280
+ F + + I HGG + A+ G P + +P DQ +
Sbjct: 283 DGADCFAIGEVNHQVLF--GRVAAVIHHGGAGTTHVAARAGAPQILLPQMADQPYYAGRV 340
Query: 281 RHRGYALIEPIQTLTKQSFLKNAQTMLNDPSFKQNAKKWA-SIANDEIVSPLERVVYWTE 339
G + T S T L P A A +I D +
Sbjct: 341 AELGVGVAHDGPIPTFDSLSAALATAL-TPETHARATAVAGTIRTD---GAAVAARLLLD 396
Query: 340 YVLRHKGA 347
V R K
Sbjct: 397 AVSREKPT 404
Score = 38.3 bits (89), Expect = 0.003
Identities = 13/88 (14%), Positives = 23/88 (26%), Gaps = 9/88 (10%)
Query: 1 MSFGSVVDPTKLSEETKLGFLEVFKQLKLPIFWKIDITNDPVLNAKTLPDNVFIQKWYPQ 60
+ FGS+ P ++ + + I L + F
Sbjct: 243 LGFGSLGAPADAVRVA----IDAIRAHGRRV---ILSRGWADLVLPDDGADCFAIGEVNH 295
Query: 61 TDILAHPNLRLFITHGGISSLMNWNRYG 88
+ + I HGG + R G
Sbjct: 296 QVLF--GRVAAVIHHGGAGTTHVAARAG 321
Score = 31.7 bits (72), Expect = 0.37
Identities = 7/40 (17%), Positives = 14/40 (35%), Gaps = 5/40 (12%)
Query: 142 ALAERGHEVTIYT--KFTPKSNSTNLKHVPIRLPKIDARM 179
+ + G +V + + + HVP+ AR
Sbjct: 23 RVRDLGADVRMCAPPDCAERLAEVGVPHVPVGP---SARA 59
>3h4t_A Glycosyltransferase GTFA, glycosyltransferase; vancomycin,
teicoplanin, ORF1, natural products, antibiotic; HET:
UDP; 1.15A {Amycolatopsis orientalis} PDB: 3h4i_A*
1pn3_A* 1pnv_A*
Length = 404
Score = 73.8 bits (181), Expect = 1e-14
Identities = 23/142 (16%), Positives = 43/142 (30%), Gaps = 10/142 (7%)
Query: 221 LPDNVFIQKWYPQTDILAHPNLRLFITHGGISSLMEASSLGVPVLGVPFFGDQYRNMVLL 280
D+ + + + + HGG + + G P + VP DQ +
Sbjct: 266 EGDDCLVVGEVNHQVLF--GRVAAVVHHGGAGTTTAVTRAGAPQVVVPQKADQPYYAGRV 323
Query: 281 RHRGYALIEPIQTLTKQSFLKNAQTMLNDPSFKQNAKKWA-SIANDEIVSPLERVVYWTE 339
G + T T +S L A P + A A +I D E
Sbjct: 324 ADLGVGVAHDGPTPTVES-LSAALATALTPGIRARAAAVAGTIRTD---GTTVAAKLLLE 379
Query: 340 YVLRHKGAPHLSASSRQLTWYQ 361
+ R + + +++ +
Sbjct: 380 AISRQRSS---VPAAKLAAALE 398
Score = 38.7 bits (90), Expect = 0.003
Identities = 12/88 (13%), Positives = 26/88 (29%), Gaps = 9/88 (10%)
Query: 1 MSFGSVVDPTKLSEETKLGFLEVFKQLKLPIFWKIDITNDPVLNAKTLPDNVFIQKWYPQ 60
+ FGS P + + +E + + + + L D+ +
Sbjct: 226 VGFGSGPAPAEAARVA----IEAVRAQGRRV---VLSSGWAGLGRIDEGDDCLVVGEVNH 278
Query: 61 TDILAHPNLRLFITHGGISSLMNWNRYG 88
+ + + HGG + R G
Sbjct: 279 QVLF--GRVAAVVHHGGAGTTTAVTRAG 304
Score = 30.6 bits (69), Expect = 1.0
Identities = 10/61 (16%), Positives = 20/61 (32%), Gaps = 3/61 (4%)
Query: 142 ALAERGHEVTIYT--KFTPKSNSTNLKHVPIRLPKIDARMIDPTKLSEETKLGFLEVFKQ 199
L E G + + + + + VP+ + A +P +L EV +
Sbjct: 23 RLRELGADARMCLPPDYVERCAEVGVPMVPVG-RAVRAGAREPGELPPGAAEVVTEVVAE 81
Query: 200 L 200
Sbjct: 82 W 82
>1rrv_A Glycosyltransferase GTFD; GT-B, glycosyltransferase, rossmann fold,
glycopeptide, VACO antibiotic, transferase-antibiotic
complex; HET: OMZ GHP OMY 3FG TYD BGC; 2.00A
{Amycolatopsis orientalis} SCOP: c.87.1.5
Length = 416
Score = 71.8 bits (176), Expect = 7e-14
Identities = 31/138 (22%), Positives = 47/138 (34%), Gaps = 8/138 (5%)
Query: 221 LPDNVFIQKWYPQTDILAHPNLRLFITHGGISSLMEASSLGVPVLGVPFFGDQYRNMVLL 280
D+ F + + I HG + A+ GVP L +P DQ +
Sbjct: 284 DRDDCFAIDEVNFQALF--RRVAAVIHHGSAGTEHVATRAGVPQLVIPRNTDQPYFAGRV 341
Query: 281 RHRGYALIEPIQTLTKQSFLKNAQTMLNDPSFKQNAKKWA-SIANDEIVSPLERVVYWTE 339
G + T T +S L A T + P + A+ A + D + + V+
Sbjct: 342 AALGIGVAHDGPTPTFES-LSAALTTVLAPETRARAEAVAGMVLTDGAAAAADLVL---A 397
Query: 340 YVLRHKGA-PHLSASSRQ 356
V R K A P L
Sbjct: 398 AVGREKPAVPALEHHHHH 415
Score = 34.4 bits (79), Expect = 0.067
Identities = 7/41 (17%), Positives = 11/41 (26%), Gaps = 2/41 (4%)
Query: 48 LPDNVFIQKWYPQTDILAHPNLRLFITHGGISSLMNWNRYG 88
D+ F + + I HG + R G
Sbjct: 284 DRDDCFAIDEVNFQALF--RRVAAVIHHGSAGTEHVATRAG 322
Score = 32.9 bits (75), Expect = 0.16
Identities = 8/46 (17%), Positives = 14/46 (30%), Gaps = 4/46 (8%)
Query: 142 ALAERGHEVTIYT--KFTPKSNSTNLKHVPIRLPKIDARMIDPTKL 185
L G + + + + HVP+ LP M+
Sbjct: 23 RLKALGVQTRMCAPPAAEERLAEVGVPHVPVGLP--QHMMLQEGMP 66
>3hbf_A Flavonoid 3-O-glucosyltransferase; glycosyltransferase, GT-B fold,
GT1, phenylpropanoid metabolism; HET: UDP MYC; 2.10A
{Medicago truncatula} PDB: 3hbj_A*
Length = 454
Score = 63.0 bits (154), Expect = 4e-11
Identities = 24/57 (42%), Positives = 35/57 (61%)
Query: 226 FIQKWYPQTDILAHPNLRLFITHGGISSLMEASSLGVPVLGVPFFGDQYRNMVLLRH 282
I W PQ +IL H ++ +F+TH G +S++E GVP++ PFFGDQ N +L
Sbjct: 330 KIVAWAPQVEILKHSSVGVFLTHSGWNSVLECIVGGVPMISRPFFGDQGLNTILTES 386
Score = 34.5 bits (80), Expect = 0.050
Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 6/33 (18%)
Query: 53 FIQKWYPQTDILAHPNLRLFITHGGISSLMNWN 85
I W PQ +IL H ++ +F+TH G WN
Sbjct: 330 KIVAWAPQVEILKHSSVGVFLTHSG------WN 356
>2pq6_A UDP-glucuronosyl/UDP-glucosyltransferase; glycosylation,
isoflavonoid, uridine diphosphate glycosyltransferase;
2.10A {Medicago truncatula} SCOP: c.87.1.10
Length = 482
Score = 63.1 bits (154), Expect = 5e-11
Identities = 28/101 (27%), Positives = 45/101 (44%), Gaps = 3/101 (2%)
Query: 226 FIQKWYPQTDILAHPNLRLFITHGGISSLMEASSLGVPVLGVPFFGDQYRNMVLLRHRGY 285
I W PQ +L HP++ F+TH G +S E+ GVP+L PFF DQ + + +
Sbjct: 356 LIASWCPQDKVLNHPSIGGFLTHCGWNSTTESICAGVPMLCWPFFADQPTDCRFICNEWE 415
Query: 286 ALIEPIQTLTKQSFLKNAQTMLNDPS---FKQNAKKWASIA 323
+E + ++ K ++ KQ A + A
Sbjct: 416 IGMEIDTNVKREELAKLINEVIAGDKGKKMKQKAMELKKKA 456
Score = 33.1 bits (76), Expect = 0.15
Identities = 13/33 (39%), Positives = 17/33 (51%), Gaps = 6/33 (18%)
Query: 53 FIQKWYPQTDILAHPNLRLFITHGGISSLMNWN 85
I W PQ +L HP++ F+TH G WN
Sbjct: 356 LIASWCPQDKVLNHPSIGGFLTHCG------WN 382
>2c1x_A UDP-glucose flavonoid 3-O glycosyltransferase; WINE, catalysis,
glycosylation; HET: UDP B3P; 1.9A {Vitis vinifera} SCOP:
c.87.1.10 PDB: 2c1z_A* 2c9z_A*
Length = 456
Score = 63.0 bits (154), Expect = 6e-11
Identities = 23/54 (42%), Positives = 34/54 (62%)
Query: 229 KWYPQTDILAHPNLRLFITHGGISSLMEASSLGVPVLGVPFFGDQYRNMVLLRH 282
W PQ ++LAH + F+TH G +SL E+ + GVP++ PFFGDQ N ++
Sbjct: 331 PWAPQAEVLAHEAVGAFVTHCGWNSLWESVAGGVPLICRPFFGDQRLNGRMVED 384
Score = 34.5 bits (80), Expect = 0.063
Identities = 12/30 (40%), Positives = 16/30 (53%), Gaps = 6/30 (20%)
Query: 56 KWYPQTDILAHPNLRLFITHGGISSLMNWN 85
W PQ ++LAH + F+TH G WN
Sbjct: 331 PWAPQAEVLAHEAVGAFVTHCG------WN 354
>2vch_A Hydroquinone glucosyltransferase; glycosyltransferase,
N-glucosyltransferase, UDP-glucose- dependent, plant
glycosyltransferase; HET: UDP; 1.45A {Arabidopsis
thaliana} SCOP: c.87.1.10 PDB: 2vce_A* 2vg8_A*
Length = 480
Score = 58.4 bits (142), Expect = 2e-09
Identities = 22/54 (40%), Positives = 33/54 (61%)
Query: 227 IQKWYPQTDILAHPNLRLFITHGGISSLMEASSLGVPVLGVPFFGDQYRNMVLL 280
I W PQ +LAHP+ F+TH G +S +E+ G+P++ P + +Q N VLL
Sbjct: 343 IPFWAPQAQVLAHPSTGGFLTHCGWNSTLESVVSGIPLIAWPLYAEQKMNAVLL 396
Score = 34.1 bits (79), Expect = 0.087
Identities = 14/32 (43%), Positives = 17/32 (53%), Gaps = 6/32 (18%)
Query: 54 IQKWYPQTDILAHPNLRLFITHGGISSLMNWN 85
I W PQ +LAHP+ F+TH G WN
Sbjct: 343 IPFWAPQAQVLAHPSTGGFLTHCG------WN 368
>2acv_A Triterpene UDP-glucosyl transferase UGT71G1; glycosyltransferase;
HET: UDP; 2.00A {Medicago truncatula} SCOP: c.87.1.10
PDB: 2acw_A*
Length = 463
Score = 57.6 bits (140), Expect = 3e-09
Identities = 20/55 (36%), Positives = 32/55 (58%)
Query: 226 FIQKWYPQTDILAHPNLRLFITHGGISSLMEASSLGVPVLGVPFFGDQYRNMVLL 280
I W PQ ++LAH + F++H G +S++E+ GVP+L P + +Q N L
Sbjct: 335 MICGWAPQVEVLAHKAIGGFVSHCGWNSILESMWFGVPILTWPIYAEQQLNAFRL 389
Score = 33.7 bits (78), Expect = 0.10
Identities = 12/33 (36%), Positives = 17/33 (51%), Gaps = 6/33 (18%)
Query: 53 FIQKWYPQTDILAHPNLRLFITHGGISSLMNWN 85
I W PQ ++LAH + F++H G WN
Sbjct: 335 MICGWAPQVEVLAHKAIGGFVSHCG------WN 361
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 54.5 bits (130), Expect = 4e-08
Identities = 79/460 (17%), Positives = 138/460 (30%), Gaps = 152/460 (33%)
Query: 22 EVFKQLKLPIFW----KIDITNDPVLNAKTLPDNVFIQKWYPQTDILAHPNLRLFITHGG 77
+V ++ IFW + + + L W ++D ++ LR+
Sbjct: 175 KVQCKMDFKIFWLNLKNCNSPETVLEMLQKLL-YQIDPNWTSRSDHSSNIKLRIHSIQAE 233
Query: 78 ISSLMNWNRYGTGGALPNLCTMNHFSFIILL---------SFSFLGTLSCDKILV----- 123
+ L+ Y N ++LL +F+ SC KIL+
Sbjct: 234 LRRLLKSKPY------EN-------CLLVLLNVQNAKAWNAFNL----SC-KILLTTRFK 275
Query: 124 ----FLPLPIWSHQMQYEKVWTALAERGHEV-TIYTKFTPKSNST----NLKHVPIRLPK 174
FL +H T L EV ++ K+ L P RL
Sbjct: 276 QVTDFLSAATTTHISLDHHSMT-LTPD--EVKSLLLKYLDCRPQDLPREVLTTNPRRLSI 332
Query: 175 IDARMIDPT------------KLSE--ETKLGFLE------VFKQL-------KLP---- 203
I + D KL+ E+ L LE +F +L +P
Sbjct: 333 IAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILL 392
Query: 204 -IFWKIDITNDPVLNAKTLPDNVFIQKWYP---------QTDILAHPNL-----RLFITH 248
+ W I +D ++ L ++K ++ R + H
Sbjct: 393 SLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDH 452
Query: 249 GGISSLMEASSLGVPVLGVPFFGDQYRNMVLLRHRGYALIEPIQTLTKQSFLKNAQTMLN 308
I ++ L P L DQY H G+ LKN
Sbjct: 453 YNIPKTFDSDDLIPPYL------DQY----FYSHIGH-------------HLKNI----- 484
Query: 309 DPSFKQNAKKWASIANDEIVSPLERVVY----WTEYVLRHKGAPHLSASS-----RQLTW 359
++ ++ L R+V+ + E +RH ++ S +QL +
Sbjct: 485 -----EHPERMT----------LFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKF 529
Query: 360 YQMYCIDIILVILGILYAVVKLLSMC---CCRSSKKHTQV 396
Y+ Y D ++ A++ L S K+T +
Sbjct: 530 YKPYICDNDPKYERLVNAILDFLPKIEENLICS--KYTDL 567
Score = 34.1 bits (77), Expect = 0.084
Identities = 40/230 (17%), Positives = 66/230 (28%), Gaps = 50/230 (21%)
Query: 13 SEETKLGF--LEVF-KQLKLP-----IFWKIDITNDPVLNAKTLPDNVFIQKWYP----- 59
E + F L VF +P + W I +D ++ L ++K
Sbjct: 368 PAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTIS 427
Query: 60 ----QTDILAHPNLRLFITHGGISSLMNWNR-YGTGGALPNLCTMNHFSFI--------- 105
++ + H I N + + + +P +S I
Sbjct: 428 IPSIYLELKVKLENEYAL-HRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEH 486
Query: 106 ---------ILLSFSFLG-TLSCDKILVFLPLPIWS--HQMQ-YEKVWTALAERGHE-VT 151
+ L F FL + D I + Q++ Y+ + V
Sbjct: 487 PERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVN 546
Query: 152 IYTKFTPKSNSTNLKHVPIRLPKIDARMIDPTKLSEETKLGFLEVFKQLK 201
F PK NL I D I L E + F E KQ++
Sbjct: 547 AILDFLPKIE-ENL----ICSKYTDLLRI---ALMAEDEAIFEEAHKQVQ 588
>2jzc_A UDP-N-acetylglucosamine transferase subunit ALG13; rossmann-like
fold, endoplasmic reticulum, glycosyltransferase,
structural genomics; NMR {Saccharomyces cerevisiae} PDB:
2ks6_A
Length = 224
Score = 43.6 bits (102), Expect = 4e-05
Identities = 20/141 (14%), Positives = 40/141 (28%), Gaps = 4/141 (2%)
Query: 193 FLEVFKQLKLPIFWKIDITNDPVLNAKTLPDNVFIQKWYPQTDILAHPNLRLFITHGGIS 252
+ K+PI V + + + L I+H G
Sbjct: 84 RGGQRESQKIPIDQFGCGDTARQYVLMNGKLKVIGFDFSTKMQSIIRDYSDLVISHAGTG 143
Query: 253 SLMEASSLGVPVLGVPFF----GDQYRNMVLLRHRGYALIEPIQTLTKQSFLKNAQTMLN 308
S++++ L P++ Q + GY + L+ +QT
Sbjct: 144 SILDSLRLNKPLIVCVNDSLMDNHQQQIADKFVELGYVWSCAPTETGLIAGLRASQTEKL 203
Query: 309 DPSFKQNAKKWASIANDEIVS 329
P + + + + I S
Sbjct: 204 KPFPVSHNPSFERLLVETIYS 224
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 40.4 bits (94), Expect = 0.001
Identities = 74/453 (16%), Positives = 143/453 (31%), Gaps = 164/453 (36%)
Query: 69 LR-LFITHGGIS-SLMNWNRYGTGGALPNLCTMNHFSFIILLSFSFLGTLS--------- 117
R L ++HG + L+ +P T + F L F L
Sbjct: 6 TRPLTLSHGSLEHVLL----------VP---TASFFIASQLQE-QFNKILPEPTEGFAAD 51
Query: 118 ---------CDKILVFLPLPI-WSHQMQYEKV-WTALAE------RGHEV-TIYTKFTPK 159
K L ++ + S Q+++V L E G+++ + K +
Sbjct: 52 DEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQE 111
Query: 160 SNSTNLKHVPIRLPKIDARMIDPTKLSEETKLGFLEVFK--QLKL-PIF---------WK 207
+++T +K + I AR++ +++ +L IF ++
Sbjct: 112 NDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFE 171
Query: 208 --IDI--TNDPVLN------AKTL----PDNVFIQKWYPQT-DI---LAHPNLR---LFI 246
D+ T ++ A+TL + +K + Q +I L +P+ ++
Sbjct: 172 ELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYL 231
Query: 247 THGGISSLMEASSLGVPVLGVPFFGDQYRNMVLLRHRGY---ALIEPIQTLTK------- 296
IS P++GV Y +V + G+ L ++ T
Sbjct: 232 LSIPIS---------CPLIGVIQLA-HY--VVTAKLLGFTPGELRSYLKGATGHSQGLVT 279
Query: 297 ----------QSFLKNAQTMLN------------------DPSFKQNAKKWASIANDEIV 328
+SF + + + PS + S+ N+E V
Sbjct: 280 AVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILE-----DSLENNEGV 334
Query: 329 -SP------LERVVYWTEYVLRH--KGAPHLSASSRQLTWYQMYCIDIIL-------VIL 372
SP L + E V + K HL A + ++I L V+
Sbjct: 335 PSPMLSISNLTQ-----EQVQDYVNKTNSHLPAGKQ---------VEISLVNGAKNLVVS 380
Query: 373 G---ILYAVVKLLSMCCCRSSKKHTQVSSTKKK 402
G LY + L S +++ +++K
Sbjct: 381 GPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERK 413
Score = 32.7 bits (74), Expect = 0.23
Identities = 15/82 (18%), Positives = 32/82 (39%), Gaps = 26/82 (31%)
Query: 25 KQLKLPIFWKIDITN--DPVLNAKTLPDNVFIQKWYPQTDILAHP-----NLRLFITH-- 75
K +++P++ D + D + + ++ + + I+ P + TH
Sbjct: 453 KDIQIPVY---DTFDGSDLRVLSGSISERIVDC-------IIRLPVKWETTTQFKATHIL 502
Query: 76 --G-----GISSLMNWNRYGTG 90
G G+ L + N+ GTG
Sbjct: 503 DFGPGGASGLGVLTHRNKDGTG 524
Score = 31.9 bits (72), Expect = 0.44
Identities = 52/302 (17%), Positives = 91/302 (30%), Gaps = 116/302 (38%)
Query: 45 AKTL----PDNVFIQKWYPQT-DI---LAHPNLR---LFITHGGISSLMNWNRYGTGGAL 93
A+TL + +K + Q +I L +P+ ++ IS
Sbjct: 192 AETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPIS-------------C 238
Query: 94 P--NLCTMNHFS-FIILLSFS-------FLGTLSCDKILVFLPLPI-----W-SHQMQYE 137
P + + H+ LL F+ G + LV + I W S +
Sbjct: 239 PLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLV-TAVAIAETDSWESFFVSVR 297
Query: 138 KVWTALAE---RGHEVTIYTKFTPKSNSTNLKH---VPIRLPKIDARMIDPTKLSEETKL 191
K T L R +E T P +L++ VP + M+ + L++E
Sbjct: 298 KAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVP-------SPMLSISNLTQEQVQ 350
Query: 192 GFLEVFKQLKLPIFWKIDITNDPVLNAKTLPDNVFIQKWYPQTDILAHPNLRL------- 244
++ LP +++I+ ++N N + PQ+ L NL L
Sbjct: 351 DYVNKTNS-HLPAGKQVEIS---LVNG---AKN-LVVSGPPQS--LYGLNLTLRKAKAPS 400
Query: 245 -------------------F--IT---HGGISSLME------------------ASSLGV 262
F + H S L+ A + +
Sbjct: 401 GLDQSRIPFSERKLKFSNRFLPVASPFH---SHLLVPASDLINKDLVKNNVSFNAKDIQI 457
Query: 263 PV 264
PV
Sbjct: 458 PV 459
Score = 28.1 bits (62), Expect = 7.2
Identities = 27/154 (17%), Positives = 46/154 (29%), Gaps = 48/154 (31%)
Query: 144 AERGHEVTI-YTKFTPKSNST-NLKHVPIRLPKIDARMIDPTKLSEETKLGFLEVFKQLK 201
E+G + Y+ ++ LK I +I+ T SE+ L F Q
Sbjct: 1678 GEKGKRIRENYSAMIFETIVDGKLKTEKI-FKEINEHSTSYTFRSEKGLL-SATQFTQ-- 1733
Query: 202 LP-IF------WKIDITNDPVLNAKTLPDNVFIQKWYPQTDILA-HPNLRLFITHGGISS 253
P + ++ L +K L P A H S
Sbjct: 1734 -PALTLMEKAAFE-------DLKSKGL---------IPADATFAGH-------------S 1763
Query: 254 LMEASSLGVPVLGVPFFGDQYRNMVLLRHRGYAL 287
L E ++L + V ++ +RG +
Sbjct: 1764 LGEYAAL-ASLADVMSIESLVE---VVFYRGMTM 1793
>2iw1_A Lipopolysaccharide core biosynthesis protein RFAG; transferase,
lipopolysaccharide biosynthesis, family GT-4,
glycosyltransferase, LPS; HET: U2F; 1.5A {Escherichia
coli} SCOP: c.87.1.8 PDB: 2iv7_A*
Length = 374
Score = 33.1 bits (76), Expect = 0.15
Identities = 7/14 (50%), Positives = 10/14 (71%)
Query: 141 TALAERGHEVTIYT 154
+ +A RGH V +YT
Sbjct: 25 STVAARGHHVRVYT 38
>3c48_A Predicted glycosyltransferases; retaining glycosyltransferase, beta
alpha beta, substrate AS catalysis; 2.10A
{Corynebacterium glutamicum} PDB: 3c4v_A* 3c4q_A*
Length = 438
Score = 32.3 bits (74), Expect = 0.29
Identities = 8/13 (61%), Positives = 10/13 (76%)
Query: 142 ALAERGHEVTIYT 154
LA++G EV IYT
Sbjct: 54 ELAKQGIEVDIYT 66
>2gek_A Phosphatidylinositol mannosyltransferase (PIMA); GT4
glycosyltransferase, rossmann fold, complex; HET: GDP;
2.40A {Mycobacterium smegmatis} PDB: 2gej_A*
Length = 406
Score = 31.9 bits (73), Expect = 0.36
Identities = 5/14 (35%), Positives = 8/14 (57%)
Query: 141 TALAERGHEVTIYT 154
L + GHEV++
Sbjct: 46 EVLRDAGHEVSVLA 59
>2r60_A Glycosyl transferase, group 1; rossmann-fold; 1.80A
{Halothermothrix orenii} PDB: 2r66_A* 2r68_A*
Length = 499
Score = 31.6 bits (72), Expect = 0.42
Identities = 14/64 (21%), Positives = 22/64 (34%), Gaps = 10/64 (15%)
Query: 142 ALAERGHEVTIYTKFTPKSNSTNLKHVP--------IRLPKIDARMIDPTKLSEETKLGF 193
ALAE G +V I T+ N +R+ +I L +E +
Sbjct: 45 ALAEMGVQVDIITRRIKDENWPEFSGEIDYYQETNKVRIVRIPFGGDKF--LPKEELWPY 102
Query: 194 LEVF 197
L +
Sbjct: 103 LHEY 106
>1uc8_A LYSX, lysine biosynthesis enzyme; alpha-aminoadipate pathway, riken
structural genomics/proteomics initiative, RSGI,
structural genomics; 2.00A {Thermus thermophilus} SCOP:
c.30.1.6 d.142.1.7 PDB: 1uc9_A*
Length = 280
Score = 31.3 bits (71), Expect = 0.48
Identities = 25/154 (16%), Positives = 41/154 (26%), Gaps = 29/154 (18%)
Query: 130 WSHQMQYEKVWTALAERGHEVTIYTKFTPKSNSTNLKHVPIRLPKIDARMIDPTKLSEET 189
+M +E G + L P L + + +S+
Sbjct: 11 PDERMLFE----RAEALGLPYKK---VYVPALPMVLGERPKELEGVTVAL--ERCVSQSR 61
Query: 190 KLGFLEVFKQLKLPIFWKIDITNDP--VLNAKTLPDNVFIQKWYPQTDILAHPNLRL--- 244
L L +P+ N P + D KW + LA L
Sbjct: 62 GLAAARYLTALGIPVV------NRPEVIEACG---D-----KWA-TSVALAKAGLPQPKT 106
Query: 245 FITHGGISSLMEASSLGVPVLGVPFFGDQYRNMV 278
+ +L + G PV+ P G R +
Sbjct: 107 ALATDREEALRLMEAFGYPVVLKPVIGSWGRLLA 140
>3hbm_A UDP-sugar hydrolase; PSEG; 1.80A {Campylobacter jejuni subsp} PDB:
3hbn_A*
Length = 282
Score = 31.3 bits (69), Expect = 0.54
Identities = 10/61 (16%), Positives = 20/61 (32%), Gaps = 3/61 (4%)
Query: 229 KWYPQTDILAHPNLR--LFITHGGISSLMEASSLGVPVLGVPFFGDQYRNMVLLRHRGYA 286
+ + + +A I S + EA L + + +Q L +GY
Sbjct: 211 RLFIDHENIAKLMNESNKLIISAS-SLVNEALLLKANFKAICYVKNQESTATWLAKKGYE 269
Query: 287 L 287
+
Sbjct: 270 V 270
>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin,
flavin, electron transfer, hydride transfer,
oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia
coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1
Length = 671
Score = 30.8 bits (70), Expect = 0.93
Identities = 6/15 (40%), Positives = 9/15 (60%)
Query: 141 TALAERGHEVTIYTK 155
A RGH+VT++
Sbjct: 390 INAAARGHQVTLFDA 404
>2jjm_A Glycosyl transferase, group 1 family protein; anthrax, nucleotide,
carbohydrate; 3.10A {Bacillus anthracis} PDB: 3mbo_A*
Length = 394
Score = 30.3 bits (69), Expect = 1.2
Identities = 12/70 (17%), Positives = 24/70 (34%), Gaps = 7/70 (10%)
Query: 142 ALAERGHEVTIYTKFTPKSNSTNLKHVPI-RLPKIDARMIDPTKLSEETKLGFLEVFKQL 200
LAERGHE+ T P + ++ + ++ + + K
Sbjct: 39 QLAERGHEIHFITSGLPFRLNKVYPNIYFHEVT------VNQYSVFQYPPYDLALASKMA 92
Query: 201 KLPIFWKIDI 210
++ +DI
Sbjct: 93 EVAQRENLDI 102
>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein
complex; HET: FMN ADP AMP; 2.0A {Methylophilus
methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB:
1djn_A* 1o95_A* 2tmd_A* 1djq_A*
Length = 729
Score = 30.4 bits (69), Expect = 1.2
Identities = 4/13 (30%), Positives = 6/13 (46%)
Query: 141 TALAERGHEVTIY 153
L E G+ V +
Sbjct: 406 RVLMESGYTVHLT 418
>1c0p_A D-amino acid oxidase; alpha-beta-alpha motif, flavin containing
protein, oxidoreductase; HET: FAD; 1.20A {Rhodosporidium
toruloides} SCOP: c.4.1.2 d.16.1.3 PDB: 1c0i_A* 1c0l_A*
1c0k_A*
Length = 363
Score = 30.0 bits (67), Expect = 1.3
Identities = 7/21 (33%), Positives = 11/21 (52%), Gaps = 2/21 (9%)
Query: 140 WTA--LAERGHEVTIYTKFTP 158
+A LA +G+ V I + P
Sbjct: 20 SSALILARKGYSVHILARDLP 40
>2iuy_A Avigt4, glycosyltransferase; antibiotics, family GT-4, avilamycin
A; HET: MES; 2.1A {Streptomyces viridochromogenes} PDB:
2iv3_A*
Length = 342
Score = 30.1 bits (68), Expect = 1.4
Identities = 8/40 (20%), Positives = 15/40 (37%), Gaps = 4/40 (10%)
Query: 142 ALAERGHEVTIYTKFTPKSNSTNLKHVPIRLPKIDARMID 181
L E GHEV + + + + +P + I+
Sbjct: 42 GLLELGHEVFL---LGAPGSPAGRPGLTV-VPAGEPEEIE 77
>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site,
oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter
simplex}
Length = 690
Score = 29.9 bits (68), Expect = 1.6
Identities = 5/13 (38%), Positives = 8/13 (61%)
Query: 141 TALAERGHEVTIY 153
AL RG++V +
Sbjct: 408 RALGVRGYDVVLA 420
>3okp_A GDP-mannose-dependent alpha-(1-6)-phosphatidylino monomannoside
mannosyltransferase...; GT-B fold,
alpha-mannosyltransferase; HET: GDD; 2.00A
{Corynebacterium glutamicum} PDB: 3okc_A* 3oka_A*
Length = 394
Score = 30.0 bits (68), Expect = 1.6
Identities = 12/41 (29%), Positives = 15/41 (36%), Gaps = 5/41 (12%)
Query: 230 WYPQTDILAHPNLRLFITHG----GISSLMEASSLGVPVLG 266
DI A P GI +EA + GVPV+
Sbjct: 269 TLAAADIFAMPARTRGGGLDVEGLGIV-YLEAQACGVPVIA 308
>1f0k_A MURG, UDP-N-acetylglucosamine-N-acetylmuramyl- (pentapeptide)
pyrophosphoryl-undecaprenol...; rossmann fold,
transferase; 1.90A {Escherichia coli} SCOP: c.87.1.2
PDB: 1nlm_A*
Length = 364
Score = 29.0 bits (66), Expect = 2.9
Identities = 21/92 (22%), Positives = 37/92 (40%), Gaps = 6/92 (6%)
Query: 250 GISSLMEASSLGVPVLGVPF-FGD--QYRNMVLLRHRGYALIEPIQTLTKQSFLKNAQTM 306
G ++ E ++ G+P L VPF D QY N + L G A I L+ +
Sbjct: 263 GALTVSEIAAAGLPALFVPFQHKDRQQYWNALPLEKAGAAKIIEQPQLSVDAVANTLAGW 322
Query: 307 LNDPSFK--QNAKKWASI-ANDEIVSPLERVV 335
+ + A+ + A + + + + RV
Sbjct: 323 SRETLLTMAERARAASIPDATERVANEVSRVA 354
>2ifa_A Hypothetical protein SMU.260; alpha-beta protein, structural
genomics, PSI-2, protein STRU initiative; HET: FMN;
2.30A {Streptococcus mutans} SCOP: d.90.1.1
Length = 208
Score = 27.6 bits (61), Expect = 5.5
Identities = 9/46 (19%), Positives = 20/46 (43%), Gaps = 4/46 (8%)
Query: 128 PIWSHQ---MQYEKVWTALAERGHEVTIYTKFTPKSNSTNLKHVPI 170
WS Q + +W ALAE+ +++ + P ++ + +
Sbjct: 120 QPWSEQAHGIALYAIWLALAEQNIGMSVQH-YNPLVDAQVAEKYDL 164
>2qs8_A XAA-Pro dipeptidase; amidohydrolase, TIM barrel, protein structure
initiative, PSI-2, NYSGXRC, structural genomics; 2.33A
{Alteromonas macleodii} SCOP: b.92.1.9 c.1.9.18
Length = 418
Score = 28.1 bits (63), Expect = 5.6
Identities = 11/53 (20%), Positives = 20/53 (37%), Gaps = 5/53 (9%)
Query: 249 GGISSLMEASSLGVPV-----LGVPFFGDQYRNMVLLRHRGYALIEPIQTLTK 296
+ +A GV + GV G ++ V + G ++ IQ+ T
Sbjct: 308 QISDTFRKAYEKGVKIAFGTDAGVQKHGTNWKEFVYMVENGMPAMKAIQSATM 360
>2x6q_A Trehalose-synthase TRET; biosynthetic protein; 2.20A {Pyrococcus
horikoshii} PDB: 2x6r_A 2xa1_A 2xa2_A* 2xa9_A* 2xmp_A*
Length = 416
Score = 28.1 bits (63), Expect = 5.7
Identities = 15/70 (21%), Positives = 22/70 (31%), Gaps = 6/70 (8%)
Query: 142 ALAERGHEVTIYTKFTPKSNSTNLKHVPIRLPKIDARMIDPTKLSEETKLGFLEVFKQLK 201
L G E + P K L + + KL+EE K +L V ++
Sbjct: 65 LLRSIGIEARWFVIEGPTEFFNVTKTFHNAL-----QGNESLKLTEEMKELYLNVNRENS 119
Query: 202 LPI-FWKIDI 210
I D
Sbjct: 120 KFIDLSSFDY 129
>2vou_A 2,6-dihydroxypyridine hydroxylase; oxidoreductase, aromatic
hydroxylase, nicotine degradation, mono-oxygenase; HET:
FAD; 2.6A {Arthrobacter nicotinovorans} SCOP: c.3.1.2
d.16.1.2
Length = 397
Score = 28.1 bits (63), Expect = 6.2
Identities = 4/12 (33%), Positives = 7/12 (58%)
Query: 142 ALAERGHEVTIY 153
L + G +V +Y
Sbjct: 23 MLRDAGVDVDVY 34
>3alj_A 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; alpha/beta fold,
oxidoreductase; HET: FAD; 1.48A {Mesorhizobium loti}
PDB: 3alh_A* 3ali_A* 3gmb_A* 3gmc_A* 3alk_A* 3alm_A*
3all_A*
Length = 379
Score = 28.0 bits (63), Expect = 6.6
Identities = 4/12 (33%), Positives = 8/12 (66%)
Query: 142 ALAERGHEVTIY 153
AL + G +V ++
Sbjct: 29 ALKQNGWDVRLH 40
>3rp8_A Flavoprotein monooxygenase; FAD-binding protein, oxidoreductase;
HET: FAD; 1.97A {Klebsiella pneumoniae} PDB: 3rp7_A*
3rp6_A*
Length = 407
Score = 28.0 bits (63), Expect = 6.7
Identities = 4/12 (33%), Positives = 7/12 (58%)
Query: 142 ALAERGHEVTIY 153
AL + G + +Y
Sbjct: 41 ALKQSGIDCDVY 52
>2x0d_A WSAF; GT4 family, transferase; HET: MSE; 2.28A {Geobacillus
stearothermophilus} PDB: 2x0f_A* 2x0e_A*
Length = 413
Score = 27.4 bits (60), Expect = 8.3
Identities = 1/35 (2%), Positives = 5/35 (14%)
Query: 141 TALAERGHEVTIYTKFTPKSNSTNLKHVPIRLPKI 175
+ + I + +
Sbjct: 73 EQFDNKKFKKRIILTDATPNPKDLQSFKSFKYVMP 107
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.323 0.138 0.428
Gapped
Lambda K H
0.267 0.0677 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 6,152,185
Number of extensions: 362011
Number of successful extensions: 964
Number of sequences better than 10.0: 1
Number of HSP's gapped: 923
Number of HSP's successfully gapped: 90
Length of query: 403
Length of database: 6,701,793
Length adjustment: 96
Effective length of query: 307
Effective length of database: 4,021,377
Effective search space: 1234562739
Effective search space used: 1234562739
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 58 (26.2 bits)