RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy16938
(403 letters)
>d2c1xa1 c.87.1.10 (A:7-456) UDP glucose:flavonoid
3-o-glucosyltransferase {Grape (Vitis vinifera) [TaxId:
29760]}
Length = 450
Score = 97.9 bits (242), Expect = 6e-23
Identities = 57/327 (17%), Positives = 105/327 (32%), Gaps = 29/327 (8%)
Query: 29 LPIFWKIDITNDPVLNAKTLPDNVFIQKWYPQTDILAHPNLRLFITHGGISSLMNWNRYG 88
L ID + + + + + P + +L+ I G ++SL + +
Sbjct: 141 LSTHVYIDEIREKIGVSGIQGREDELLNFIPGMSKVRFRDLQEGIVFGNLNSLFSRMLHR 200
Query: 89 TGGALPNLCTMNHFSFIILLSFSFLGTLSCDKILVFLPLPIWSHQMQYEKVWTALAERGH 148
G LP + SF L S K + +
Sbjct: 201 MGQVLPKATAVFINSFEELDDSLTNDLKSKLK-------TYLNIGPFNLITPPPVVPNTT 253
Query: 149 EVTIYTKFTPKSNSTNLKHVPIRLPKIDARMIDPTKLSEETKLGFLEVFKQLKLPIFWKI 208
+ K ++ + + P ++ E + ++P W +
Sbjct: 254 GCLQWLKERKPTSVVYISFGTVT-------TPPPAEVVA-----LSEALEASRVPFIWSL 301
Query: 209 DITNDPVLNAKTLP---DNVFIQKWYPQTDILAHPNLRLFITHGGISSLMEASSLGVPVL 265
L L + W PQ ++LAH + F+TH G +SL E+ + GVP++
Sbjct: 302 RDKARVHLPEGFLEKTRGYGMVVPWAPQAEVLAHEAVGAFVTHCGWNSLWESVAGGVPLI 361
Query: 266 GVPFFGDQYRNMVLL-RHRGYALIEPIQTLTKQSFLKNAQTMLNDPSFK---QNAKKWAS 321
PFFGDQ N ++ + TK + +L+ K +N +
Sbjct: 362 CRPFFGDQRLNGRMVEDVLEIGVRIEGGVFTKSGLMSCFDQILSQEKGKKLRENLRALRE 421
Query: 322 IAN---DEIVSPLERVVYWTEYVLRHK 345
A+ S E + + V + K
Sbjct: 422 TADRAVGPKGSSTENFITLVDLVSKPK 448
Score = 41.7 bits (96), Expect = 1e-04
Identities = 13/161 (8%), Positives = 35/161 (21%), Gaps = 9/161 (5%)
Query: 123 VFLPLPIWSHQMQYEKVWTALAERGHEVTIYTKFTPKSNSTNLK------HVPIRLPKID 176
L P +H V LA T +SN++ I+ I
Sbjct: 5 AVLAFPFSTHAAPLLAVVRRLAAAAPHAVFSFFSTSQSNASIFHDSMHTMQCNIKSYDIS 64
Query: 177 ARMIDPTKLSEETKLGFLEVFKQLKLPIFWKIDITNDPVLNAKTLPDNVFIQKWYPQTDI 236
+ + + + + + V + +
Sbjct: 65 DGVPEGYVFAGRPQEDIELFTRAAPESFRQGMV---MAVAETGRPVSCLVADAFIWFAAD 121
Query: 237 LAHPNLRLFITHGGISSLMEASSLGVPVLGVPFFGDQYRNM 277
+A ++ ++ + + + +
Sbjct: 122 MAAEMGVAWLPFWTAGPNSLSTHVYIDEIREKIGVSGIQGR 162
>d1iira_ c.87.1.5 (A:) UDP-glucosyltransferase GtfB {Amycolatopsis
orientalis [TaxId: 31958]}
Length = 401
Score = 87.5 bits (215), Expect = 2e-19
Identities = 21/144 (14%), Positives = 37/144 (25%), Gaps = 7/144 (4%)
Query: 193 FLEVFKQLKLPIFWKIDITNDPVLNAKTLPDNVFIQKWYPQTDILAHPNLRLFITHGGIS 252
++ + + + + F + + I HGG
Sbjct: 258 AIDAIRAHGRRVILSRGWADLV---LPDDGADCFAIGEVNHQVLFGR--VAAVIHHGGAG 312
Query: 253 SLMEASSLGVPVLGVPFFGDQYRNMVLLRHRGYALIEPIQTLTKQSFLKNAQTMLNDPSF 312
+ A+ G P + +P DQ + G + T S T L P
Sbjct: 313 TTHVAARAGAPQILLPQMADQPYYAGRVAELGVGVAHDGPIPTFDSLSAALATAL-TPET 371
Query: 313 KQNAKKWAS-IANDEIVSPLERVV 335
A A I D ++
Sbjct: 372 HARATAVAGTIRTDGAAVAARLLL 395
Score = 39.7 bits (91), Expect = 4e-04
Identities = 19/209 (9%), Positives = 43/209 (20%), Gaps = 10/209 (4%)
Query: 142 ALAERGHEVTIYT--KFTPKSNSTNLKHVPIRLPKIDARMIDPTKLSEETKLGFLEVFKQ 199
+ + G +V + + + HVP+ +E+ + E
Sbjct: 23 RVRDLGADVRMCAPPDCAERLAEVGVPHVPVGPSARAPIQRAKPLTAEDVRRFTTEAIAT 82
Query: 200 LKLPIFWKIDITNDPVLNAKTLPDNVFIQKWYPQTDILAHPNLRLFITHGGISSLMEASS 259
V+ L + ++ + I S + +
Sbjct: 83 Q-FDEIPAAAEGCAAVVTTGLLAAAIGVRSVAEKLGIPYFY-------AFHCPSYVPSPY 134
Query: 260 LGVPVLGVPFFGDQYRNMVLLRHRGYALIEPIQTLTKQSFLKNAQTMLNDPSFKQNAKKW 319
P LG P D + + L + D
Sbjct: 135 YPPPPLGEPSTQDTIDIPAQWERNNQSAYQRYGGLLNSHRDAIGLPPVEDIFTFGYTDHP 194
Query: 320 ASIANDEIVSPLERVVYWTEYVLRHKGAP 348
A+ + + +
Sbjct: 195 WVAADPVLAPLQPTDLDAVQTGAWILPDE 223
Score = 35.9 bits (81), Expect = 0.007
Identities = 11/88 (12%), Positives = 22/88 (25%), Gaps = 9/88 (10%)
Query: 1 MSFGSVVDPTKLSEETKLGFLEVFKQLKLPIFWKIDITNDPVLNAKTLPDNVFIQKWYPQ 60
+ FGS+ P ++ + + + + F
Sbjct: 243 LGFGSLGAPADAVRV----AIDAIRAHGRRVILSRGWADLV---LPDDGADCFAIGEVNH 295
Query: 61 TDILAHPNLRLFITHGGISSLMNWNRYG 88
+ + I HGG + R G
Sbjct: 296 QVLFGR--VAAVIHHGGAGTTHVAARAG 321
>d1rrva_ c.87.1.5 (A:) TDP-vancosaminyltransferase GftD
{Amycolatopsis orientalis [TaxId: 31958]}
Length = 401
Score = 86.3 bits (212), Expect = 3e-19
Identities = 24/137 (17%), Positives = 41/137 (29%), Gaps = 6/137 (4%)
Query: 187 EETKLGFLEVFKQLKLPIFWKIDITNDPVLNAKTLPDNVFIQKWYPQTDILAHPNLRLFI 246
+ +E + + L D+ F + + I
Sbjct: 253 ADAAKVAVEAIRAQGRRVIL---SRGWTELVLPDDRDDCFAIDEVNFQALFRR--VAAVI 307
Query: 247 THGGISSLMEASSLGVPVLGVPFFGDQYRNMVLLRHRGYALIEPIQTLTKQSFLKNAQTM 306
HG + A+ GVP L +P DQ + G + T T +S T+
Sbjct: 308 HHGSAGTEHVATRAGVPQLVIPRNTDQPYFAGRVAALGIGVAHDGPTPTFESLSAALTTV 367
Query: 307 LNDPSFKQNAKKWASIA 323
L P + A+ A +
Sbjct: 368 L-APETRARAEAVAGMV 383
Score = 38.5 bits (88), Expect = 0.001
Identities = 9/77 (11%), Positives = 21/77 (27%), Gaps = 2/77 (2%)
Query: 142 ALAERGHEVTIYT--KFTPKSNSTNLKHVPIRLPKIDARMIDPTKLSEETKLGFLEVFKQ 199
L G + + + + HVP+ LP+ E + + +
Sbjct: 23 RLKALGVQTRMCAPPAAEERLAEVGVPHVPVGLPQHMMLQEGMPPPPPEEEQRLAAMTVE 82
Query: 200 LKLPIFWKIDITNDPVL 216
++ V+
Sbjct: 83 MQFDAVPGAAEGCAAVV 99
Score = 33.5 bits (75), Expect = 0.036
Identities = 9/75 (12%), Positives = 17/75 (22%), Gaps = 5/75 (6%)
Query: 14 EETKLGFLEVFKQLKLPIFWKIDITNDPVLNAKTLPDNVFIQKWYPQTDILAHPNLRLFI 73
+ +E + + L D+ F + + I
Sbjct: 253 ADAAKVAVEAIRAQGRRVIL---SRGWTELVLPDDRDDCFAIDEVNFQALFRR--VAAVI 307
Query: 74 THGGISSLMNWNRYG 88
HG + R G
Sbjct: 308 HHGSAGTEHVATRAG 322
>d2pq6a1 c.87.1.10 (A:8-480) (Iso)flavonoid glycosyltransferase
{Medicago truncatula [TaxId: 3880]}
Length = 473
Score = 79.0 bits (193), Expect = 1e-16
Identities = 44/252 (17%), Positives = 78/252 (30%), Gaps = 11/252 (4%)
Query: 82 MNWNRYGTGGALPNLCTMNHFSFIILLSFSFLGTLSCDKILVFLPLPIWSHQMQYEKVWT 141
N N + +N + I+L +F+ L + + + +P + T
Sbjct: 199 TNPNDIMLEFFIEVADRVNKDTTILLNTFNELESDVINALSSTIPSIYPIGPLPSLLKQT 258
Query: 142 ALAERGHEVTIYTKFTPKSNSTNLKHVPIRLPKIDARMIDPTKLSEETKLGFLEVFKQLK 201
+ + L+ E+ F K
Sbjct: 259 PQIHQLDSLDSNLWKEDTECLDWLESKEPGSVVYVNFGSTTVMTPEQLLE-FAWGLANCK 317
Query: 202 LPIFWKIDITNDPVLNAK-------TLPDNVFIQKWYPQTDILAHPNLRLFITHGGISSL 254
W I + + D I W PQ +L HP++ F+TH G +S
Sbjct: 318 KSFLWIIRPDLVIGGSVIFSSEFTNEIADRGLIASWCPQDKVLNHPSIGGFLTHCGWNST 377
Query: 255 MEASSLGVPVLGVPFFGDQYRNMVLLRHRGYALIEPIQTLTKQSFLKNAQTMLNDPS--- 311
E+ GVP+L PFF DQ + + + +E + ++ K ++
Sbjct: 378 TESICAGVPMLCWPFFADQPTDCRFICNEWEIGMEIDTNVKREELAKLINEVIAGDKGKK 437
Query: 312 FKQNAKKWASIA 323
KQ A + A
Sbjct: 438 MKQKAMELKKKA 449
Score = 37.1 bits (84), Expect = 0.004
Identities = 10/61 (16%), Positives = 17/61 (27%), Gaps = 2/61 (3%)
Query: 123 VFLPLPIWSHQMQYEKVWTALAERGHEVTIYT--KFTPKSNSTNLKHVPIRLPKIDARMI 180
V +P P+ H K+ L RG +T + + + I
Sbjct: 5 VMIPYPVQGHINPLFKLAKLLHLRGFHITFVNTEYNHKRLLKSRGPKAFDGFTDFNFESI 64
Query: 181 D 181
Sbjct: 65 P 65
Score = 35.9 bits (81), Expect = 0.007
Identities = 17/69 (24%), Positives = 26/69 (37%), Gaps = 4/69 (5%)
Query: 14 EETKLGFLEVFKQLKLPIFWKIDITNDPVLNAKTLPDNVFIQKWYPQTDILAHPNLRLFI 73
K FL + + + I + D I W PQ +L HP++ F+
Sbjct: 314 ANCKKSFLWIIRPDLVIGGSVIF----SSEFTNEIADRGLIASWCPQDKVLNHPSIGGFL 369
Query: 74 THGGISSLM 82
TH G +S
Sbjct: 370 THCGWNSTT 378
>d2acva1 c.87.1.10 (A:3-463) Triterpene UDP-glucosyl transferase
UGT71G1 {Medicago truncatula [TaxId: 3880]}
Length = 461
Score = 77.5 bits (189), Expect = 4e-16
Identities = 29/154 (18%), Positives = 56/154 (36%), Gaps = 10/154 (6%)
Query: 181 DPTKLSEETKLGFLEVFKQLKLPIFWKIDITNDPVLNAKTLPDNVFIQKWYPQTDILAHP 240
E LG + + + + L L I W PQ ++LAH
Sbjct: 288 FGPSQIREIALGLKHSGVRFLWSNSAEKKVFPEGFLEWMELEGKGMICGWAPQVEVLAHK 347
Query: 241 NLRLFITHGGISSLMEASSLGVPVLGVPFFGDQYRNMVLLRHR---GYALIEPIQ----T 293
+ F++H G +S++E+ GVP+L P + +Q N L G L +
Sbjct: 348 AIGGFVSHCGWNSILESMWFGVPILTWPIYAEQQLNAFRLVKEWGVGLGLRVDYRKGSDV 407
Query: 294 LTKQSFLKNA--QTMLNDPSFKQNAKKWASIAND 325
+ + ++ M D + ++ ++ +
Sbjct: 408 VAAEE-IEKGLKDLMDKDSIVHKKVQEMKEMSRN 440
Score = 37.4 bits (85), Expect = 0.003
Identities = 13/89 (14%), Positives = 23/89 (25%), Gaps = 9/89 (10%)
Query: 122 LVFLPLPIWSHQMQYEKVWTALAERGHEVTIYTKFTPKSNSTNLK---------HVPIRL 172
L+F+P P H + L + I I+L
Sbjct: 10 LIFIPAPGIGHLASALEFAKLLTNHDKNLYITVFCIKFPGMPFADSYIKSVLASQPQIQL 69
Query: 173 PKIDARMIDPTKLSEETKLGFLEVFKQLK 201
+ P +L + + L + L
Sbjct: 70 IDLPEVEPPPQELLKSPEFYILTFLESLI 98
>d1pn3a_ c.87.1.5 (A:) TDP-epi-vancosaminyltransferase GtfA
{Amycolatopsis orientalis [TaxId: 31958]}
Length = 391
Score = 77.0 bits (188), Expect = 4e-16
Identities = 19/160 (11%), Positives = 41/160 (25%), Gaps = 10/160 (6%)
Query: 171 RLPKIDARMIDPTKLSEETKLGFLEVFKQLKLPIFWKIDITNDPVLNAKTLPDNVFIQKW 230
P + + ++ + I + + + + F+
Sbjct: 221 STPVYVGFGSSSRPATADAAKMAIKAVRASGRRIVLSRGWADLVLPD---DGADCFVVGE 277
Query: 231 YPQTDILAHPNLRLFITHGGISSLMEASSLGVPVLGVPFFGD----QYRNMVLLRHRGYA 286
++ + I H + + A G+P + V D Q + + G
Sbjct: 278 VNLQELFGR--VAAAIHHDSAGTTLLAMRAGIPQIVVRRVVDNVVEQAYHADRVAELGVG 335
Query: 287 LIEPIQTLTKQSFLKNAQTMLNDPSFKQNAKKWASIANDE 326
+ T S T L P + A A +
Sbjct: 336 VAVDGPVPTIDSLSAALDTAL-APEIRARATTVADTIRAD 374
Score = 35.0 bits (79), Expect = 0.013
Identities = 10/61 (16%), Positives = 20/61 (32%), Gaps = 3/61 (4%)
Query: 142 ALAERGHEVTIYT--KFTPKSNSTNLKHVPIRLPKIDARMIDPTKLSEETKLGFLEVFKQ 199
L E G + + + + + VP+ + A +P +L EV +
Sbjct: 23 RLRELGADARMCLPPDYVERCAEVGVPMVPVG-RAVRAGAREPGELPPGAAEVVTEVVAE 81
Query: 200 L 200
Sbjct: 82 W 82
Score = 35.0 bits (79), Expect = 0.015
Identities = 5/80 (6%), Positives = 20/80 (25%), Gaps = 5/80 (6%)
Query: 3 FGSVVDPTKLSEETKLGFLEVFKQLKLPIFWKIDITNDPVLNAKTLPDNVFIQKWYPQTD 62
G + + ++ + I + + + + F+ +
Sbjct: 226 VGFGSSSRPATADAAKMAIKAVRASGRRIVLSRGWADLVLPD---DGADCFVVGEVNLQE 282
Query: 63 ILAHPNLRLFITHGGISSLM 82
+ + I H + +
Sbjct: 283 LFGR--VAAAIHHDSAGTTL 300
>d2vcha1 c.87.1.10 (A:6-476) Hydroquinone glucosyltransferase {Thale
cress (Arabidopsis thaliana) [TaxId: 3702]}
Length = 471
Score = 72.9 bits (177), Expect = 1e-14
Identities = 27/112 (24%), Positives = 49/112 (43%), Gaps = 7/112 (6%)
Query: 219 KTLPDNVFIQKWYPQTDILAHPNLRLFITHGGISSLMEASSLGVPVLGVPFFGDQYRNMV 278
+T I W PQ +LAHP+ F+TH G +S +E+ G+P++ P + +Q N V
Sbjct: 330 RTKKRGFVIPFWAPQAQVLAHPSTGGFLTHCGWNSTLESVVSGIPLIAWPLYAEQKMNAV 389
Query: 279 LLRHRGYALIEP----IQTLTKQSFLKNAQTMLNDPS---FKQNAKKWASIA 323
LL A + P + ++ + + ++ + K+ A
Sbjct: 390 LLSEDIRAALRPRAGDDGLVRREEVARVVKGLMEGEEGKGVRNKMKELKEAA 441
Score = 37.0 bits (84), Expect = 0.003
Identities = 14/37 (37%), Positives = 20/37 (54%)
Query: 46 KTLPDNVFIQKWYPQTDILAHPNLRLFITHGGISSLM 82
+T I W PQ +LAHP+ F+TH G +S +
Sbjct: 330 RTKKRGFVIPFWAPQAQVLAHPSTGGFLTHCGWNSTL 366
Score = 35.5 bits (80), Expect = 0.010
Identities = 18/91 (19%), Positives = 31/91 (34%), Gaps = 5/91 (5%)
Query: 123 VFLPLPIWSHQMQYEKVWTALAE-RGHEVTIYT---KFTPKSNSTNLKHVPIRLPKIDAR 178
+P P H + + L G VT K+ T L +P + +
Sbjct: 5 AIIPSPGMGHLIPLVEFAKRLVHLHGLTVTFVIAGEGPPSKAQRTVLDSLPSSISSVFLP 64
Query: 179 MIDPTKLSEETKL-GFLEVFKQLKLPIFWKI 208
+D T LS T++ + + P K+
Sbjct: 65 PVDLTDLSSSTRIESRISLTVTRSNPELRKV 95
>d1f0ka_ c.87.1.2 (A:) Peptidoglycan biosynthesis
glycosyltransferase MurG {Escherichia coli [TaxId: 562]}
Length = 351
Score = 35.5 bits (80), Expect = 0.008
Identities = 34/285 (11%), Positives = 80/285 (28%), Gaps = 26/285 (9%)
Query: 77 GISSLMNWNRYGTGGALPNLCTMNHFSFIILLSFSFLGTLSCDKILVFLPLPIWSHQMQY 136
GI +L+ M + ++L + L +P+ H+
Sbjct: 64 GIKALIAAPLRIFNAWRQARAIMKAYKPDVVLGMGGYVSGPGGLAAWSLGIPVVLHEQNG 123
Query: 137 EKVWTALAERGHEVTIYTKFTP----------------KSNSTNLKHVPIRLPKIDARMI 180
T + F + + + R + ++
Sbjct: 124 IAGLTNKWLAKIATKVMQAFPGAFPNAEVVGNPVRTDVLALPLPQQRLAGREGPVRVLVV 183
Query: 181 DPTKLSEETKLGFLEVFKQLKLPIFWKIDITNDPVLNAKTLPDNVFIQKW----YPQTDI 236
++ + +V +L + + + + +
Sbjct: 184 GGSQGARILNQTMPQVAAKLGDSVTIWHQSGKGSQQSVEQAYAEAGQPQHKVTEFIDDMA 243
Query: 237 LAHPNLRLFITHGGISSLMEASSLGVPVLGVPFF---GDQYRNMVLLRHRGYALIEPIQT 293
A+ + + G ++ E ++ G+P L VPF QY N + L G A I
Sbjct: 244 AAYAWADVVVCRSGALTVSEIAAAGLPALFVPFQHKDRQQYWNALPLEKAGAAKIIEQPQ 303
Query: 294 LTKQSFLKNAQTMLNDP--SFKQNAKKWASI-ANDEIVSPLERVV 335
L+ + + + + A+ + A + + + + RV
Sbjct: 304 LSVDAVANTLAGWSRETLLTMAERARAASIPDATERVANEVSRVA 348
>d2iw1a1 c.87.1.8 (A:2-371) Lipopolysaccharide core biosynthesis
protein RfaG {Escherichia coli [TaxId: 562]}
Length = 370
Score = 29.1 bits (63), Expect = 0.87
Identities = 7/41 (17%), Positives = 15/41 (36%)
Query: 142 ALAERGHEVTIYTKFTPKSNSTNLKHVPIRLPKIDARMIDP 182
+A RGH V +YT+ + + + + +
Sbjct: 25 TVAARGHHVRVYTQSWEGDCPKAFELIQVPVKSHTNHGRNA 65
>d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase,
N-terminal domain {Rhodotorula gracilis [TaxId: 5286]}
Length = 268
Score = 28.1 bits (61), Expect = 2.0
Identities = 7/22 (31%), Positives = 12/22 (54%), Gaps = 2/22 (9%)
Query: 139 VWTA--LAERGHEVTIYTKFTP 158
+ +A LA +G+ V I + P
Sbjct: 19 LSSALILARKGYSVHILARDLP 40
>d2bisa1 c.87.1.8 (A:1-437) Glycogen synthase 1, GlgA {Pyrococcus
abyssi [TaxId: 29292]}
Length = 437
Score = 28.2 bits (61), Expect = 2.1
Identities = 8/37 (21%), Positives = 17/37 (45%)
Query: 142 ALAERGHEVTIYTKFTPKSNSTNLKHVPIRLPKIDAR 178
ALA GHEV ++T + + + + ++ +
Sbjct: 28 ALASLGHEVLVFTPSHGRFQGEEIGKIRVFGEEVQVK 64
>d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase
{Trypanosome (Leishmania mexicana) [TaxId: 5665]}
Length = 189
Score = 27.5 bits (60), Expect = 2.5
Identities = 17/116 (14%), Positives = 32/116 (27%), Gaps = 15/116 (12%)
Query: 142 ALAERGHEVTIYTKFTPKSNSTNLKHVPIRLPKIDARMIDPTKLSEETKL---------- 191
L+++ EV ++ + N K + K + T S+ K
Sbjct: 25 VLSKKCREVCVWHMNEEEVRLVNEKRENVLFLKGVQLASNITFTSDVEKAYNGAEIILFV 84
Query: 192 ----GFLEVFKQLKLPIFWKIDITNDPVLNA-KTLPDNVFIQKWYPQTDILAHPNL 242
F++ + PVL K + + + L P L
Sbjct: 85 IPTQFLRGFFEKSGGNLIAYAKEKQVPVLVCTKGIERSTLKFPAEIIGEFLPSPLL 140
>d1pyla_ d.1.1.2 (A:) Ribonuclease Sa2 {Streptomyces aureofaciens
[TaxId: 1894]}
Length = 96
Score = 26.3 bits (58), Expect = 2.5
Identities = 6/42 (14%), Positives = 13/42 (30%), Gaps = 5/42 (11%)
Query: 324 NDEIVSPLERVVYWTEYV-----LRHKGAPHLSASSRQLTWY 360
N E P + Y+ E+ +G + ++
Sbjct: 40 NRESRLPKKGNGYYHEFTVVTPGSNDRGTRRVVTGGYGEQYW 81
>d1nepa_ b.1.18.7 (A:) Epididymal secretory protein E1 (Niemann-Pick
C2 protein) {Cow (Bos taurus) [TaxId: 9913]}
Length = 130
Score = 26.5 bits (58), Expect = 3.7
Identities = 10/42 (23%), Positives = 16/42 (38%), Gaps = 10/42 (23%)
Query: 146 RGHEVTIYTKFTPKSNSTNLK----------HVPIRLPKIDA 177
RG ++ FT + S + K VP +P+ D
Sbjct: 32 RGQSYSVNVTFTSNTQSQSSKAVVHGIVMGIPVPFPIPESDG 73
>d1rzua_ c.87.1.8 (A:) Glycogen synthase 1, GlgA {Agrobacterium
tumefaciens [TaxId: 358]}
Length = 477
Score = 27.3 bits (59), Expect = 3.9
Identities = 13/93 (13%), Positives = 23/93 (24%), Gaps = 6/93 (6%)
Query: 142 ALAERGHEVTIYTKFTPKSNSTNLK-HVPIRLPKIDARMIDPTKLSEETKLGFLEVFKQL 200
AL G P + P++ + + + L E + L
Sbjct: 29 ALEAHGVRTRT---LIPGYPAVKAAVTDPVKCFEFTDLLGEKADLLEVQHERLDLLI--L 83
Query: 201 KLPIFWKIDITNDPVLNAKTLPDNVFIQKWYPQ 233
P +++ K PDN
Sbjct: 84 DAPAYYERSGGPYLGQTGKDYPDNWKRFAALSL 116
>d2mpra_ f.4.3.2 (A:) Maltoporin (also LamB protein) {Salmonella
typhimurium [TaxId: 90371]}
Length = 427
Score = 27.3 bits (60), Expect = 4.0
Identities = 8/31 (25%), Positives = 14/31 (45%), Gaps = 6/31 (19%)
Query: 55 QKWYPQTDILAHPNLRLFITHGGISSLMNWN 85
Q+W I + P +R+F T+ W+
Sbjct: 359 QQWQAGDSIWSRPAIRIFATY------AKWD 383
>d1orra_ c.2.1.2 (A:) CDP-tyvelose-2-epimerase {Salmonella typhi
[TaxId: 90370]}
Length = 338
Score = 27.0 bits (58), Expect = 4.3
Identities = 4/28 (14%), Positives = 12/28 (42%)
Query: 142 ALAERGHEVTIYTKFTPKSNSTNLKHVP 169
+G ++ ++ + K + NL +
Sbjct: 19 FALSQGIDLIVFDNLSRKGATDNLHWLS 46
>d1db3a_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escherichia coli
[TaxId: 562]}
Length = 357
Score = 26.3 bits (57), Expect = 6.7
Identities = 7/38 (18%), Positives = 15/38 (39%)
Query: 142 ALAERGHEVTIYTKFTPKSNSTNLKHVPIRLPKIDARM 179
L E+G+EV + N+ + H+ + +
Sbjct: 20 FLLEKGYEVHGIKRRASSFNTERVDHIYQDPHTCNPKF 57
>d1r9da_ c.7.1.1 (A:) Glycerol dehydratase DhaB1 {Clostridium
butyricum [TaxId: 1492]}
Length = 786
Score = 26.3 bits (58), Expect = 7.9
Identities = 12/49 (24%), Positives = 24/49 (48%), Gaps = 6/49 (12%)
Query: 172 LPKIDARMIDPTKLSEETKLGFLEVFKQLKLPIFWKIDITNDPVLNAKT 220
L +++ R D ++SEE+K +VF+ +W T++ + T
Sbjct: 97 LDRLNKRTGDAFQISEESKEKLKDVFE------YWNGKTTSELATSYMT 139
>d1rpna_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomonas
aeruginosa [TaxId: 287]}
Length = 321
Score = 25.7 bits (55), Expect = 9.4
Identities = 6/29 (20%), Positives = 10/29 (34%)
Query: 142 ALAERGHEVTIYTKFTPKSNSTNLKHVPI 170
L E+G+ V L+ + I
Sbjct: 19 LLLEKGYRVHGLVARRSSDTRWRLRELGI 47
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.323 0.138 0.428
Gapped
Lambda K H
0.267 0.0389 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,540,153
Number of extensions: 71879
Number of successful extensions: 248
Number of sequences better than 10.0: 1
Number of HSP's gapped: 241
Number of HSP's successfully gapped: 35
Length of query: 403
Length of database: 2,407,596
Length adjustment: 87
Effective length of query: 316
Effective length of database: 1,213,086
Effective search space: 383335176
Effective search space used: 383335176
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 54 (25.5 bits)